17-03-18 05:38:19.734 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:19.734 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:38:19.734 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:38:19.734 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:19.734 -07 000000467 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:38:19.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:38:19.744 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:19.744 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:38:19.744 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:38:19.744 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:38:19.864 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.994908,
17-03-18 05:38:19.864 -07 000000501 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:38:19.864 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 115 ms to get response, and 117 ms overall
17-03-18 05:38:19.864 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:38:19.864 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:38:19.864 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.550 mm, average velocity = 4.697 mm/sec
17-03-18 05:38:21.784 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:38:22.864 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:22.934 -07 000000618 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:38:22.934 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 60 ms to get response, and 70 ms overall
17-03-18 05:38:22.934 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:22.954 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:38:22.964 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:38:22.964 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3224 ms
17-03-18 05:38:22.964 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 60° ===================
17-03-18 05:38:22.964 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:38:22.964 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:38:22.974 -07 000000447 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:38:22.974 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 3 ms to get response, and 7 ms overall
17-03-18 05:38:22.974 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:38:22.974 -07 000000611 INF: FPGA: Recv TEC2EN 
17-03-18 05:38:22.984 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:38:22.984 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 60° ===================
17-03-18 05:38:22.984 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:22.984 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:38:22.984 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:23.014 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:38:23.014 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:38:23.014 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:38:23.314 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:38:23.334 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:38:23.334 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:38:23.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:23.404 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:38:23.404 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:38:23.504 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:23.504 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:38:23.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:23.534 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:38:23.534 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:38:23.534 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:38:23.664 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:38:23.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:25.224 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.956714,
17-03-18 05:38:26.784 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-18 05:38:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1878, R2=1951, Total=3829. Warn if over 250 bubbles per interval.
17-03-18 05:38:26.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:26.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:27.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:27.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:27.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:27.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:27.764 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:38:27.764 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:27.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:27.924 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:38:27.924 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:38:28.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:28.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:38:28.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:38:28.084 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:38:28.214 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:38:28.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:28.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:28.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:28.704 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:38:28.704 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:29.924 -07 000000610 INF: AsyncDelayTimer waited 1206ms
17-03-18 05:38:29.924 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:38:29.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:29.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:38:29.944 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:38:29.944 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:38:30.074 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:38:30.094 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:38:30.094 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:38:30.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:30.164 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:38:30.164 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:38:30.264 -07 000000610 INF: =================== Cycle #140, Pumping Reagent CMS (4) ===================
17-03-18 05:38:30.264 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:38:30.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:30.294 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:38:30.294 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:38:30.294 -07 000000610 INF: =================== Cycle #140, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:38:30.424 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:38:30.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:30.584 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.009895,
17-03-18 05:38:31.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 05:38:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1880, R2=1954, Total=3834. Warn if over 250 bubbles per interval.
17-03-18 05:38:31.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:31.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:32.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:32.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:32.384 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:38:32.384 -07 000000610 INF: =================== Cycle #140, Pumping Reagent CMS (4) ===================
17-03-18 05:38:32.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:32.544 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:38:32.544 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:38:32.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:32.704 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:38:32.704 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:38:32.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:38:32.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:38:32.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:33.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:33.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:33.324 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:38:33.324 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:34.544 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:38:34.544 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:38:34.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:34.564 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:38:34.564 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:38:34.564 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:38:34.714 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:38:34.734 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:38:34.734 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:38:34.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:34.804 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:38:34.804 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:38:34.904 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:34.904 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:38:34.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:34.934 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:38:34.934 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:38:34.934 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:38:35.064 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:38:35.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:35.944 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.990831,
17-03-18 05:38:35.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:36.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:36.004 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:38:36.004 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:36.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:36.164 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:38:36.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:38:36.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:36.324 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:38:36.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:38:36.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:38:36.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:38:36.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:36.784 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:38:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1881, R2=1954, Total=3835. Warn if over 250 bubbles per interval.
17-03-18 05:38:36.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:36.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:36.944 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:38:36.944 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:37.814 -07 000000447 INF: WaitCommand(10000) start
17-03-18 05:38:37.814 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:38:37.814 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:38:38.164 -07 000000512 INF: AsyncDelayTimer waited 349ms
17-03-18 05:38:38.164 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 05:38:38.194 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:38:38.194 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:38:38.324 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:38:38.364 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:39.894 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:39.924 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:40.344 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:40.374 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:40.374 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:38:40.374 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:38:40.374 -07 000000512 INF: ===================  ===================
17-03-18 05:38:41.304 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.979922,
17-03-18 05:38:41.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:38:41.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1954, Total=3836. Warn if over 250 bubbles per interval.
17-03-18 05:38:46.664 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.98264,
17-03-18 05:38:46.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:38:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1955, Total=3837. Warn if over 250 bubbles per interval.
17-03-18 05:38:47.824 -07 000000447 INF: WaitCommand(10000) end
17-03-18 05:38:47.824 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:47.824 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:38:47.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:47.864 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:38:47.864 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:38:47.864 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:38:47.994 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:38:48.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:51.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:38:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:38:52.564 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.981281,
17-03-18 05:38:54.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:54.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:54.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:54.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:55.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:55.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:55.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:55.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:38:55.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:55.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:55.994 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:38:55.994 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:38:56.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:56.154 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:38:56.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:38:56.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:56.314 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:38:56.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:38:56.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:38:56.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:38:56.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:56.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:38:56.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:38:56.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:38:56.934 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:38:56.934 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:38:57.924 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.99219,
17-03-18 05:38:58.154 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:38:58.154 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:38:58.154 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:58.174 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:38:58.174 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:38:58.174 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:38:58.384 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:38:58.404 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:38:58.404 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:38:58.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:38:58.474 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:38:58.474 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:38:58.574 -07 000000610 INF: =================== Cycle #140, Pumping Reagent IMT (1) ===================
17-03-18 05:38:58.574 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:38:58.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:38:58.604 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:38:58.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:38:58.604 -07 000000610 INF: =================== Cycle #140, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:38:58.734 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:38:58.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:00.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:00.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:00.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:00.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:00.694 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 05:39:00.694 -07 000000610 INF: =================== Cycle #140, Pumping Reagent IMT (1) ===================
17-03-18 05:39:00.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:00.854 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:39:00.854 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:39:00.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:01.014 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:39:01.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:39:01.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:39:01.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:39:01.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:01.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:01.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:01.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:39:01.634 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:39:01.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:02.854 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:39:02.854 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:39:02.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:39:02.874 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:39:02.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:39:02.874 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:39:03.104 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:39:03.124 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:39:03.124 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:39:03.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:39:03.194 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:39:03.194 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:39:03.284 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.004458,
17-03-18 05:39:03.294 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:39:03.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:39:03.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:03.324 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:39:03.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:39:03.324 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:39:03.454 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:39:03.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:04.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:04.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:04.394 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 05:39:04.394 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:39:04.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:04.554 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:39:04.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:39:04.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:04.714 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:39:04.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:39:04.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:39:04.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:39:04.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:05.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:05.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:05.334 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:39:05.334 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:39:05.334 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 65° ===================
17-03-18 05:39:05.334 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:39:05.334 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:39:05.334 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:39:05.344 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:39:05.344 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:39:05.344 -07 000000611 INF: FPGA: Recv TEC2EN 
17-03-18 05:39:05.354 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:39:05.354 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 65° ===================
17-03-18 05:39:05.354 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:39:05.354 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:39:06.784 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:08.644 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.004458,
17-03-18 05:39:11.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:14.004 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.005817,
17-03-18 05:39:16.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:16.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:19.364 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.016692,
17-03-18 05:39:21.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:24.724 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.026244,
17-03-18 05:39:26.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:30.084 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.996267,
17-03-18 05:39:31.784 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:35.364 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:39:35.364 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:39:35.364 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:39:35.444 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.994908,
17-03-18 05:39:35.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:35.494 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:39:35.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:39:35.494 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:39:35.624 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:39:35.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:36.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:36.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:36.234 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 05:39:36.234 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:39:36.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:36.394 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:39:36.394 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:39:36.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:39:36.554 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:39:36.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:39:36.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:39:36.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:39:36.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:36.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:37.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:37.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:37.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:39:37.174 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:39:37.174 -07 000000618 INF: WaitCommand(30000) start
17-03-18 05:39:37.174 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:39:37.174 -07 000000585 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:39:38.394 -07 000000585 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:39:38.394 -07 000000585 INF: LanePump: Xmit /1?\r
17-03-18 05:39:38.424 -07 000000585 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:39:38.424 -07 000000585 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:39:38.554 -07 000000585 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:39:38.594 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:40.934 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:41.234 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.030322,
17-03-18 05:39:41.244 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:39:41.664 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 05:39:41.694 -07 000000585 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:39:41.694 -07 000000585 INF: LanePump: Waited 3099 ms for pump motion to complete
17-03-18 05:39:41.694 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:39:41.694 -07 000000585 INF: ===================  ===================
17-03-18 05:39:41.784 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:41.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:46.594 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.001704,
17-03-18 05:39:46.784 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:51.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:51.954 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.001704,
17-03-18 05:39:56.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:39:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:39:57.314 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.011254,
17-03-18 05:40:01.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:01.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:40:02.674 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.031682,
17-03-18 05:40:06.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1882, R2=1956, Total=3838. Warn if over 250 bubbles per interval.
17-03-18 05:40:07.184 -07 000000618 INF: WaitCommand(30000) end
17-03-18 05:40:07.184 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 22° ===================
17-03-18 05:40:07.184 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:40:07.184 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:40:07.194 -07 000000444 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:40:07.194 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:40:07.194 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:40:07.194 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 05:40:07.204 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:07.204 -07 000000610 INF: =================== Cycle #140, Flow Cell Temp 22° ===================
17-03-18 05:40:07.204 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:40:07.204 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:40:07.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:40:07.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:07.234 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:40:07.234 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:40:07.234 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:40:07.364 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:40:07.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:08.034 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.038479,
17-03-18 05:40:10.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:10.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:10.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:11.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:11.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:11.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:11.464 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:40:11.464 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:40:11.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:11.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:40:11.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:40:11.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:11.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:40:11.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:40:11.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:40:11.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 05:40:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:11.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:40:11.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:12.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:12.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:12.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:40:12.404 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:40:13.394 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.038479,
17-03-18 05:40:13.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:40:13.624 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:40:13.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:13.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:40:13.644 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:40:13.644 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:40:13.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:40:13.814 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:40:13.814 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:40:13.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:13.884 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:40:13.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:40:13.984 -07 000000610 INF: =================== Cycle #140, Pumping Reagent USM (2) ===================
17-03-18 05:40:13.984 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:40:13.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:14.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:40:14.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:40:14.014 -07 000000610 INF: =================== Cycle #140, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:40:14.144 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:40:14.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:15.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:15.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:16.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:16.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:16.104 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:40:16.104 -07 000000610 INF: =================== Cycle #140, Pumping Reagent USM (2) ===================
17-03-18 05:40:16.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:16.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:40:16.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:40:16.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:16.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:40:16.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:40:16.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:40:16.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:40:16.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:16.784 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:16.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:17.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:17.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:17.044 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:40:17.044 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:40:18.264 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:40:18.264 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:40:18.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:18.284 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:40:18.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:40:18.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:40:18.434 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:40:18.454 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:40:18.454 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:40:18.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:18.524 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:40:18.524 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:40:18.624 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:40:18.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:40:18.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:18.654 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:40:18.654 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:40:18.654 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:40:18.754 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.031682,
17-03-18 05:40:18.784 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:40:18.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:19.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:19.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:19.724 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:40:19.724 -07 000000610 INF: =================== Cycle #140, Pumping Reagent PR2 (3) ===================
17-03-18 05:40:19.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:19.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:40:19.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:40:20.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:40:20.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:40:20.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:40:20.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:40:20.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:40:20.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:20.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:20.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:20.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:40:20.664 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:40:20.664 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:40:20.664 -07 000000618 INF: WaitCommand(10000) start
17-03-18 05:40:20.664 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:40:21.784 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:21.884 -07 000000437 INF: AsyncDelayTimer waited 1213ms
17-03-18 05:40:21.884 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 05:40:21.914 -07 000000437 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:40:21.914 -07 000000437 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:40:22.044 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:40:22.084 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:23.614 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:23.644 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:40:24.064 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 05:40:24.094 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:40:24.094 -07 000000437 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:40:24.094 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:40:24.094 -07 000000437 INF: ===================  ===================
17-03-18 05:40:24.114 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.996267,
17-03-18 05:40:26.784 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:29.474 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.001704,
17-03-18 05:40:30.674 -07 000000618 INF: WaitCommand(10000) end
17-03-18 05:40:30.674 -07 000000610 INF: =================== Cycle #140, Imaging ===================
17-03-18 05:40:30.674 -07 000000610 INF: Imaging Cycle 140: ScanTilesCommand Cycle 140 time start.
17-03-18 05:40:30.674 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:40:30.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:30.704 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:40:30.704 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:40:30.704 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:40:31.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:40:31.024 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:40:31.024 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:40:31.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:40:31.094 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:40:31.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:31.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:31.094 -07 000000437 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:40:31.094 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:31.094 -07 000000437 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:40:31.094 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-18 05:40:31.104 -07 000000437 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:31.104 -07 000000437 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:40:31.104 -07 000000474 INF: FPGA: Recv EXLED1ADCR 23156
17-03-18 05:40:31.114 -07 000000437 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:31.114 -07 000000437 INF: RedLED: Using Red data: Photodiode ADC 23156 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 05:40:31.114 -07 000000437 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:40:31.114 -07 000000611 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:40:31.124 -07 000000437 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:31.124 -07 000000437 INF: RedLED: LED was on for 20 ms
17-03-18 05:40:31.124 -07 000000437 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:40:31.124 -07 000000437 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:40:31.124 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:31.124 -07 000000437 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:40:31.124 -07 000000012 INF: FPGA: Recv EXLED2ON 
17-03-18 05:40:31.134 -07 000000437 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:31.134 -07 000000437 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:40:31.134 -07 000000611 INF: FPGA: Recv EXLED1ADCR 2103
17-03-18 05:40:31.144 -07 000000437 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:31.144 -07 000000437 INF: GreenLED: Using Green data: Photodiode ADC 2103 --> 0.9 mW (old method), or 182.7 mW (new method). Difference = 181.8 mW
17-03-18 05:40:31.144 -07 000000437 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:40:31.144 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:40:31.154 -07 000000437 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:31.154 -07 000000437 INF: GreenLED: LED was on for 20 ms
17-03-18 05:40:31.154 -07 000000437 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:40:31.154 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:40:31.154 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 05:40:31.164 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:40:31.164 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:40:31.664 -07 000000618 INF: FPGA: Recv EMOUT
17-03-18 05:40:31.664 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:40:31.664 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:40:31.664 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 05:40:31.674 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:40:31.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:31.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126612655697919. ------
17-03-18 05:40:31.674 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:31.674 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 05:40:31.674 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:31.684 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:40:31.684 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:31.684 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:40:31.684 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 05:40:31.684 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:31.684 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-18 05:40:31.684 -07 000000444 INF: Z Motor: Moving to -0.178512 mm, started at -0.126613 mm, distance = -51.90 um
17-03-18 05:40:31.684 -07 000000474 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:40:31.694 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:31.694 -07 000000012 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:31.694 -07 000000012 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:40:31.694 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:40:31.694 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:31.704 -07 000000444 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-18 05:40:31.704 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:40:31.714 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:40:31.714 -07 000000444 INF: FPGA: 'ZDACW 38996' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:40:31.724 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:31.724 -07 000000585 INF: FPGA: Recv ZDACR 38996
17-03-18 05:40:31.734 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:40:31.734 -07 000000444 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:40:31.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:31.894 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:31.894 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:40:33.394 -07 000000444 INF: FPGA: Recv YMVTO 122702 24776
17-03-18 05:40:33.404 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1709 ms overall
17-03-18 05:40:33.404 -07 000000012 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:40:33.404 -07 000000012 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:40:33.404 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1709 ms, distance = 15.467 mm, average velocity = 9.050 mm/sec
17-03-18 05:40:34.834 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.977204,
17-03-18 05:40:36.254 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:36.254 -07 000000585 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:40:36.264 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:36.264 -07 000000012 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:36.294 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:36.294 -07 000000012 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:40:36.294 -07 000000012 INF: Y Motor: Moved to 59.9102 after 4611 ms
17-03-18 05:40:36.294 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-18 05:40:36.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.294 -07 000000585 INF: FPGA: Recv ZSGSRD 37082
17-03-18 05:40:36.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:40:36.304 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.304 -07 000000585 INF: FPGA: Recv ZSGSRD 37082
17-03-18 05:40:36.314 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.314 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.314 -07 000000585 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:40:36.324 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.324 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.324 -07 000000585 INF: FPGA: Recv ZSGSRD 37084
17-03-18 05:40:36.334 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.334 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.334 -07 000000585 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:40:36.344 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.344 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.344 -07 000000585 INF: FPGA: Recv ZSGSRD 37073
17-03-18 05:40:36.354 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.354 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.354 -07 000000012 INF: FPGA: Recv ZSGSRD 37078
17-03-18 05:40:36.364 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.364 -07 000000585 INF: FPGA: Recv ZSGSRD 37077
17-03-18 05:40:36.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.374 -07 000000585 INF: FPGA: Recv ZSGSRD 37088
17-03-18 05:40:36.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:36.384 -07 000000585 INF: FPGA: Recv ZSGSRD 37084
17-03-18 05:40:36.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.394 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:36.394 -07 000000012 INF: FPGA: Recv ZPIEZORD 33362
17-03-18 05:40:36.404 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.2 V.
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37080 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37080 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37071 (-177.6 uncal um), Max = 37088 (-177.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37080, posNoise = 8, negNoise = 9
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: After move to -0.178512, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: Settle wait time = 4615 ms, measure time = 103 ms (allowed 150 ms), total time = 4718 ms
17-03-18 05:40:36.404 -07 000000629 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:36.454 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4771 ms
17-03-18 05:40:36.454 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:36.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:36.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:36.454 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:36.454 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:36.454 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:36.454 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:36.454 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:40:36.464 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:40:36.484 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:40:36.484 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:36.484 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:40:36.484 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:36.504 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:40:36.504 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 45 ms.
17-03-18 05:40:36.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:36.544 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:36.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:36.844 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:36.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:36.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:36.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:40:36.884 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:36.884 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:36.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 05:40:36.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:40:36.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:36.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:40:36.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:40:37.084 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:37.084 -07 000000012 INF: Image SNR check: start
17-03-18 05:40:37.084 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:37.094 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:37.094 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:37.094 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=125.73]
17-03-18 05:40:37.094 -07 000000012 INF: Autofocus start
17-03-18 05:40:37.094 -07 000000012 INF: MeasureProfile start
17-03-18 05:40:37.104 -07 000000012 INF: MeasureProfile done
17-03-18 05:40:37.104 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:40:37.104 -07 000000012 INF: Autofocus finished
17-03-18 05:40:37.294 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:37.294 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:40:37.294 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178533138227631. ----------
17-03-18 05:40:37.294 -07 000000610 INF: Cycle	140	Tile	1	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:37.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37493, sync = True, waitForSettling = True)
17-03-18 05:40:37.304 -07 000000610 INF: Z Motor: Moving to -0.171632 mm, started at -0.178533 mm, distance = 6.90 um
17-03-18 05:40:37.304 -07 000000610 INF: FPGA: Xmit ZDACW 37493\n [Z Motor]
17-03-18 05:40:37.304 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:40:37.314 -07 000000610 INF: FPGA: 'ZDACW 37493' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:37.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:37.314 -07 000000437 INF: FPGA: Recv ZDACR 37493
17-03-18 05:40:37.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:37.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.474 -07 000000590 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:40:37.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.484 -07 000000447 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:40:37.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.494 -07 000000590 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:40:37.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.504 -07 000000447 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:40:37.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.514 -07 000000585 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:40:37.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.524 -07 000000590 INF: FPGA: Recv ZSGSRD 36008
17-03-18 05:40:37.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.534 -07 000000437 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:40:37.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.544 -07 000000012 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:40:37.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.554 -07 000000447 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:40:37.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:37.564 -07 000000629 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:40:37.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:37.574 -07 000000447 INF: FPGA: Recv ZPIEZORD 31909
17-03-18 05:40:37.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:37.584 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -9.0 V.
17-03-18 05:40:37.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36008 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36009 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36002 (-170.7 uncal um), Max = 36011 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:40:37.584 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36008, posNoise = 3, negNoise = 6
17-03-18 05:40:37.584 -07 000000610 INF: Z Motor: After move to -0.171632, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:37.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:40:37.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:37.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:37.584 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:37.584 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:37.584 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:37.584 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:37.584 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:37.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:37.584 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:37.584 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:37.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:40:37.584 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:40:37.594 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:37.594 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:37.604 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:40:37.604 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:40:37.614 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:40:37.614 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:37.614 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:40:37.614 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:37.624 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:40:37.624 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 05:40:37.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37670 150\n [Camera]
17-03-18 05:40:37.824 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:38.274 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:38.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:38.274 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:38.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:38.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:38.274 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:38.284 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:38.284 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:40:38.284 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:38.284 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:40:38.464 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37670 829
17-03-18 05:40:38.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:38.674 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:40:38.674 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:40:38.674 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:38.674 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:40:38.674 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:40:38.674 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:38.684 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:38.684 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:40:38.684 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:40:38.694 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:40:38.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:40:38.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:40:38.824 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:38.824 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:38.824 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:40:38.834 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:40:38.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:40:38.834 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:38.834 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:38.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:40:39.024 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:40:39.024 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:40:39.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37670 150' command took 2 ms to send, 1382 ms to get response, and 1393 ms overall
17-03-18 05:40:39.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:39.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171646382811663. ------
17-03-18 05:40:39.034 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:39.034 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17787 mm
17-03-18 05:40:39.034 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:39.034 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:39.034 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38856, sync = True, waitForSettling = False)
17-03-18 05:40:39.034 -07 000000474 INF: Z Motor: Moving to -0.177871 mm, started at -0.171646 mm, distance = -6.22 um
17-03-18 05:40:39.034 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:40:39.034 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:40:39.044 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:39.044 -07 000000474 INF: FPGA: Xmit ZDACW 38856\n [Z Motor]
17-03-18 05:40:39.044 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:40:39.054 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:39.054 -07 000000474 INF: FPGA: 'ZDACW 38856' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:40:39.054 -07 000000629 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:40:39.064 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:39.064 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:40:39.064 -07 000000618 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:39.064 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:40:39.064 -07 000000618 INF: Y Motor: Moving 1332 steps1
17-03-18 05:40:39.074 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:39.074 -07 000000590 INF: FPGA: Recv ZDACR 38856
17-03-18 05:40:39.084 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:40:39.084 -07 000000474 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:40:39.084 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:40:39.224 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:40:39.224 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:40:39.224 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:39.234 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:40:39.234 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:40:39.234 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:39.234 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:40:39.234 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:40:39.244 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:40:39.244 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:40:40.274 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:40.274 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:40:40.274 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1201 ms to get response, and 1230 ms overall
17-03-18 05:40:40.274 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1181 ms to get response, and 1210 ms overall
17-03-18 05:40:40.314 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:40.324 -07 000000590 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:40:40.334 -07 000000618 INF: FPGA: 'YRDPOS' command took 10 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:40:40.334 -07 000000618 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:40.334 -07 000000618 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:40:40.334 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1211 ms, distance = 0.832 mm, average velocity = 0.687 mm/sec
17-03-18 05:40:40.584 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.009895,
17-03-18 05:40:41.284 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:41.284 -07 000000437 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:40:41.294 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:41.294 -07 000000618 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:41.324 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:41.324 -07 000000618 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:40:41.324 -07 000000618 INF: Y Motor: Moved to 60.7324 after 2289 ms (table move)
17-03-18 05:40:41.324 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177871 mm (DAC = 38856)
17-03-18 05:40:41.324 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.334 -07 000000590 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:40:41.334 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:40:41.334 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.334 -07 000000444 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:40:41.344 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:41.344 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:40:41.354 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.354 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.354 -07 000000437 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:40:41.364 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.364 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.364 -07 000000590 INF: FPGA: Recv ZSGSRD 36978
17-03-18 05:40:41.374 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.374 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:40:41.384 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.384 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.384 -07 000000590 INF: FPGA: Recv ZSGSRD 36980
17-03-18 05:40:41.394 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:40:41.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.404 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.404 -07 000000590 INF: FPGA: Recv ZSGSRD 36979
17-03-18 05:40:41.414 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:41.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:40:41.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.424 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:41.424 -07 000000590 INF: FPGA: Recv ZPIEZORD 33186
17-03-18 05:40:41.434 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36978 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 6, negNoise = 5
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: After move to -0.177871, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: Settle wait time = 2294 ms, measure time = 102 ms (allowed 150 ms), total time = 2396 ms
17-03-18 05:40:41.434 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:41.484 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2449 ms
17-03-18 05:40:41.484 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:41.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:41.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:41.484 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:41.484 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:41.484 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:41.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:41.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:41.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:41.494 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:41.494 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:41.494 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:40:41.504 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:40:41.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:41.544 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:41.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:41.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:41.844 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:41.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:41.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:41.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:40:41.884 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:41.884 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:41.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:40:41.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:40:41.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:41.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:40:41.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:40:42.084 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:42.084 -07 000000618 INF: Autofocus start
17-03-18 05:40:42.084 -07 000000618 INF: MeasureProfile start
17-03-18 05:40:42.084 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:42.094 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:42.094 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:42.094 -07 000000618 INF: MeasureProfile done
17-03-18 05:40:42.094 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:40:42.094 -07 000000618 INF: Autofocus finished
17-03-18 05:40:42.294 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:42.294 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:40:42.294 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177877868589172. ----------
17-03-18 05:40:42.294 -07 000000610 INF: Cycle	140	Tile	2	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:42.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37371, sync = True, waitForSettling = True)
17-03-18 05:40:42.304 -07 000000610 INF: Z Motor: Moving to -0.171073 mm, started at -0.177878 mm, distance = 6.80 um
17-03-18 05:40:42.304 -07 000000610 INF: FPGA: Xmit ZDACW 37371\n [Z Motor]
17-03-18 05:40:42.304 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:40:42.314 -07 000000610 INF: FPGA: 'ZDACW 37371' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:42.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:42.314 -07 000000437 INF: FPGA: Recv ZDACR 37371
17-03-18 05:40:42.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:42.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.474 -07 000000590 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:40:42.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:42.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.484 -07 000000437 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:40:42.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.494 -07 000000590 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:40:42.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.504 -07 000000590 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:40:42.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.514 -07 000000590 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:40:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.524 -07 000000590 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:40:42.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:42.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.534 -07 000000590 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:40:42.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.544 -07 000000590 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:40:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.554 -07 000000447 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:40:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:42.564 -07 000000590 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:40:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:42.574 -07 000000447 INF: FPGA: Recv ZPIEZORD 31753
17-03-18 05:40:42.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:42.584 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.2 V.
17-03-18 05:40:42.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35920 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35924 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:40:42.584 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 4, negNoise = 4
17-03-18 05:40:42.584 -07 000000610 INF: Z Motor: After move to -0.171073, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:42.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:40:42.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:42.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:42.584 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:42.584 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:42.584 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:42.584 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:42.584 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:42.584 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:42.584 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:42.584 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:42.584 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:40:42.584 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:42.594 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:40:42.594 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:42.594 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:40:42.594 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:42.604 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:40:42.604 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:40:42.604 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:40:42.604 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:40:42.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37547 150\n [Camera]
17-03-18 05:40:42.814 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:43.254 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:43.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:43.254 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:43.254 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:43.254 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:40:43.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:43.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:43.264 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:43.264 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:43.264 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:40:43.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 828
17-03-18 05:40:43.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:43.654 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:40:43.654 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:40:43.654 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:43.654 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:43.654 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:40:43.664 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:40:43.664 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:40:43.664 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:43.664 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:43.674 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:40:43.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:40:43.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:40:43.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:43.814 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:43.814 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:40:43.814 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:40:43.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:40:43.814 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:43.814 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:43.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:40:44.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:40:44.004 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:40:44.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37547 150' command took 2 ms to send, 1383 ms to get response, and 1391 ms overall
17-03-18 05:40:44.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:44.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171081052143189. ------
17-03-18 05:40:44.014 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17789 mm
17-03-18 05:40:44.014 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:44.014 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:44.014 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:40:44.014 -07 000000611 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:40:44.014 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38859, sync = True, waitForSettling = False)
17-03-18 05:40:44.014 -07 000000474 INF: Z Motor: Moving to -0.177885 mm, started at -0.171081 mm, distance = -6.80 um
17-03-18 05:40:44.014 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:44.024 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:40:44.024 -07 000000474 INF: FPGA: Xmit ZDACW 38859\n [Z Motor]
17-03-18 05:40:44.024 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:40:44.034 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:44.034 -07 000000474 INF: FPGA: 'ZDACW 38859' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:40:44.034 -07 000000618 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:40:44.044 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:44.044 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:40:44.044 -07 000000611 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:44.044 -07 000000611 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:40:44.044 -07 000000611 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:40:44.054 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:44.054 -07 000000585 INF: FPGA: Recv ZDACR 38859
17-03-18 05:40:44.064 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:40:44.064 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:40:44.064 -07 000000474 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:40:44.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:40:44.214 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:40:44.214 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:44.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:40:44.214 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:40:44.214 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:44.224 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:44.224 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:40:44.224 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:40:44.224 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:40:44.244 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:44.244 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:40:44.444 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:40:44.444 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:40:44.494 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:44.494 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:40:44.504 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:44.504 -07 000000611 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:44.504 -07 000000611 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:40:44.504 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-18 05:40:45.454 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:45.454 -07 000000437 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:40:45.464 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.464 -07 000000611 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:45.494 -07 000000611 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:45.494 -07 000000611 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:40:45.494 -07 000000611 INF: Y Motor: Moved to 61.5630 after 1478 ms (table move)
17-03-18 05:40:45.494 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177885 mm (DAC = 38859)
17-03-18 05:40:45.494 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.494 -07 000000569 INF: FPGA: Recv ZSGSRD 36989
17-03-18 05:40:45.504 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:40:45.504 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.504 -07 000000569 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:40:45.514 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.514 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.514 -07 000000569 INF: FPGA: Recv ZSGSRD 36978
17-03-18 05:40:45.524 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.524 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.524 -07 000000611 INF: FPGA: Recv ZSGSRD 36974
17-03-18 05:40:45.534 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.534 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.534 -07 000000569 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:40:45.544 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.544 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.544 -07 000000611 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:40:45.554 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.554 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.554 -07 000000611 INF: FPGA: Recv ZSGSRD 36982
17-03-18 05:40:45.564 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.564 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.564 -07 000000611 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:40:45.574 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.574 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.574 -07 000000611 INF: FPGA: Recv ZSGSRD 36982
17-03-18 05:40:45.584 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.584 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:45.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:40:45.594 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.594 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:45.594 -07 000000618 INF: FPGA: Recv ZPIEZORD 33216
17-03-18 05:40:45.604 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.3 V.
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36981 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36989 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36981, posNoise = 8, negNoise = 8
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: After move to -0.177885, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: Settle wait time = 1481 ms, measure time = 106 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:40:45.604 -07 000000444 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:45.654 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 05:40:45.654 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:45.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:45.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:45.654 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:45.654 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:45.654 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:45.654 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:45.654 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:45.654 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:45.664 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:40:45.664 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:45.664 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:40:45.664 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:40:45.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:45.724 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:45.944 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.007176,
17-03-18 05:40:46.014 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:46.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:46.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:46.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 05:40:46.054 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:46.054 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:46.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:40:46.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:40:46.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:46.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:40:46.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:40:46.154 -07 000000569 INF: Autofocus start
17-03-18 05:40:46.154 -07 000000569 INF: MeasureProfile start
17-03-18 05:40:46.154 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:46.154 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:46.164 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:46.164 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:46.164 -07 000000569 INF: MeasureProfile done
17-03-18 05:40:46.164 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:40:46.164 -07 000000569 INF: Autofocus finished
17-03-18 05:40:46.364 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:46.364 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:40:46.364 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177897141225597. ----------
17-03-18 05:40:46.374 -07 000000610 INF: Cycle	140	Tile	3	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:46.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37356, sync = True, waitForSettling = True)
17-03-18 05:40:46.374 -07 000000610 INF: Z Motor: Moving to -0.171005 mm, started at -0.177897 mm, distance = 6.89 um
17-03-18 05:40:46.374 -07 000000610 INF: FPGA: Xmit ZDACW 37356\n [Z Motor]
17-03-18 05:40:46.374 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:40:46.384 -07 000000610 INF: FPGA: 'ZDACW 37356' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:46.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:46.384 -07 000000444 INF: FPGA: Recv ZDACR 37356
17-03-18 05:40:46.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:46.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.544 -07 000000444 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:40:46.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.554 -07 000000444 INF: FPGA: Recv ZSGSRD 35909
17-03-18 05:40:46.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.564 -07 000000012 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:40:46.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.574 -07 000000611 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:40:46.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.584 -07 000000611 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:40:46.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.594 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:40:46.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.604 -07 000000012 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:40:46.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.614 -07 000000012 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:40:46.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35902
17-03-18 05:40:46.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:46.634 -07 000000444 INF: FPGA: Recv ZSGSRD 35911
17-03-18 05:40:46.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:46.644 -07 000000437 INF: FPGA: Recv ZPIEZORD 31745
17-03-18 05:40:46.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:46.654 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 05:40:46.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35902 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:40:46.654 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 7, negNoise = 8
17-03-18 05:40:46.654 -07 000000610 INF: Z Motor: After move to -0.171005, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:46.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:40:46.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:46.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:46.664 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:46.664 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:46.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:46.664 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:46.664 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:40:46.664 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:46.664 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:46.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:46.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:46.674 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:46.674 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:40:46.674 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:46.674 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:40:46.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:46.684 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:40:46.684 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:40:46.694 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:40:46.694 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 05:40:46.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37533 150\n [Camera]
17-03-18 05:40:46.784 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:46.894 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:47.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:47.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:47.334 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:47.334 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:47.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:40:47.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:47.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:47.344 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:47.344 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:47.344 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 05:40:47.534 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37533 828
17-03-18 05:40:47.684 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:47.734 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:40:47.734 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:40:47.734 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:47.744 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:40:47.744 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:40:47.744 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:47.744 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:47.744 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:40:47.744 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:47.754 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:40:47.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:40:47.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:40:47.894 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:47.894 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:47.894 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 05:40:47.894 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:40:47.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:40:47.894 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:47.894 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:47.894 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 05:40:48.084 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:40:48.084 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:40:48.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37533 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-18 05:40:48.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:48.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171016810021771. ------
17-03-18 05:40:48.094 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:48.094 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17721 mm
17-03-18 05:40:48.094 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:48.094 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:48.094 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:40:48.094 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:40:48.094 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38711, sync = True, waitForSettling = False)
17-03-18 05:40:48.094 -07 000000012 INF: Z Motor: Moving to -0.177208 mm, started at -0.171017 mm, distance = -6.19 um
17-03-18 05:40:48.104 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:48.114 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:48.114 -07 000000444 INF: FPGA: Recv YRDPOS 126082
17-03-18 05:40:48.124 -07 000000012 INF: FPGA: Xmit ZDACW 38711\n [Z Motor]
17-03-18 05:40:48.124 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:40:48.124 -07 000000618 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:48.124 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:40:48.124 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:40:48.124 -07 000000618 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:40:48.134 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:48.134 -07 000000012 INF: FPGA: 'ZDACW 38711' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 05:40:48.144 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:40:48.154 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:48.154 -07 000000590 INF: FPGA: Recv ZDACR 38711
17-03-18 05:40:48.164 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:40:48.164 -07 000000012 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-18 05:40:48.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:40:48.294 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:40:48.294 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:48.294 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:40:48.294 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:40:48.294 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:48.294 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:48.304 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:40:48.304 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:40:48.304 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:40:48.334 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:48.334 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:40:48.514 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:40:48.514 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:40:48.564 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:48.574 -07 000000590 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:40:48.574 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:40:48.574 -07 000000618 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:48.574 -07 000000618 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:40:48.574 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 05:40:49.524 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:49.524 -07 000000447 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:40:49.534 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:49.534 -07 000000618 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:49.564 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:49.564 -07 000000618 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:40:49.564 -07 000000618 INF: Y Motor: Moved to 62.3950 after 1468 ms (table move)
17-03-18 05:40:49.564 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177208 mm (DAC = 38711)
17-03-18 05:40:49.564 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.574 -07 000000444 INF: FPGA: Recv ZSGSRD 36872
17-03-18 05:40:49.574 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:40:49.574 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:40:49.584 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:49.584 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.584 -07 000000629 INF: FPGA: Recv ZSGSRD 36877
17-03-18 05:40:49.594 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.594 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.594 -07 000000447 INF: FPGA: Recv ZSGSRD 36866
17-03-18 05:40:49.604 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.604 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.604 -07 000000629 INF: FPGA: Recv ZSGSRD 36873
17-03-18 05:40:49.614 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.614 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.614 -07 000000474 INF: FPGA: Recv ZSGSRD 36869
17-03-18 05:40:49.624 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.624 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.624 -07 000000590 INF: FPGA: Recv ZSGSRD 36866
17-03-18 05:40:49.634 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.634 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.634 -07 000000474 INF: FPGA: Recv ZSGSRD 36873
17-03-18 05:40:49.644 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.644 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.644 -07 000000437 INF: FPGA: Recv ZSGSRD 36877
17-03-18 05:40:49.654 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.654 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:49.654 -07 000000447 INF: FPGA: Recv ZSGSRD 36881
17-03-18 05:40:49.664 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.664 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:49.664 -07 000000618 INF: FPGA: Recv ZPIEZORD 33080
17-03-18 05:40:49.674 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.4 V.
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36874 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36873 (-176.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36866 (-176.3 uncal um), Max = 36884 (-176.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36874, posNoise = 10, negNoise = 8
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: After move to -0.177208, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: Settle wait time = 1473 ms, measure time = 103 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:40:49.674 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:49.724 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:40:49.724 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:49.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:49.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:49.734 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:49.734 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:49.734 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:49.734 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:49.734 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:40:49.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:49.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:49.734 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:49.744 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:40:49.744 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:40:49.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:49.784 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:50.084 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:50.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:50.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:50.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 05:40:50.124 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:50.124 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:50.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:40:50.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:40:50.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:50.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:40:50.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:40:50.224 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:50.224 -07 000000012 INF: Autofocus start
17-03-18 05:40:50.224 -07 000000012 INF: MeasureProfile start
17-03-18 05:40:50.224 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:50.234 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:50.234 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:50.244 -07 000000012 INF: MeasureProfile done
17-03-18 05:40:50.244 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:40:50.244 -07 000000012 INF: Autofocus finished
17-03-18 05:40:50.434 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:50.434 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:40:50.434 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177209750526428. ----------
17-03-18 05:40:50.434 -07 000000610 INF: Cycle	140	Tile	4	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:50.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37226, sync = True, waitForSettling = True)
17-03-18 05:40:50.444 -07 000000610 INF: Z Motor: Moving to -0.170410 mm, started at -0.177210 mm, distance = 6.80 um
17-03-18 05:40:50.444 -07 000000610 INF: FPGA: Xmit ZDACW 37226\n [Z Motor]
17-03-18 05:40:50.444 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:40:50.454 -07 000000610 INF: FPGA: 'ZDACW 37226' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:50.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:50.454 -07 000000012 INF: FPGA: Recv ZDACR 37226
17-03-18 05:40:50.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:50.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.614 -07 000000611 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:40:50.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:50.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:40:50.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.634 -07 000000437 INF: FPGA: Recv ZSGSRD 35821
17-03-18 05:40:50.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.644 -07 000000447 INF: FPGA: Recv ZSGSRD 35817
17-03-18 05:40:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.654 -07 000000012 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:40:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:40:50.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.674 -07 000000629 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:40:50.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.684 -07 000000447 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:40:50.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35818
17-03-18 05:40:50.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:50.704 -07 000000437 INF: FPGA: Recv ZSGSRD 35818
17-03-18 05:40:50.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:50.714 -07 000000012 INF: FPGA: Recv ZPIEZORD 31623
17-03-18 05:40:50.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:50.724 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 05:40:50.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35819 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35818 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35826 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:40:50.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35819, posNoise = 7, negNoise = 4
17-03-18 05:40:50.724 -07 000000610 INF: Z Motor: After move to -0.170410, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:50.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:40:50.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:50.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:50.724 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:50.724 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:50.724 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:50.724 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:50.724 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:50.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:50.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:40:50.724 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:50.724 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:50.724 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:50.734 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:40:50.734 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:50.734 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:40:50.734 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:50.744 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:40:50.744 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:40:50.744 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:40:50.744 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:40:50.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37402 150\n [Camera]
17-03-18 05:40:50.944 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:51.304 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.02213,
17-03-18 05:40:51.384 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:51.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:51.384 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:51.384 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:51.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:40:51.394 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:51.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:51.394 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:51.394 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:51.394 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 05:40:51.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37402 828
17-03-18 05:40:51.734 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:51.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:40:51.774 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:40:51.774 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:51.774 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:51.774 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:40:51.774 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:40:51.774 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:51.784 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:51.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:40:51.784 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:40:51.784 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:51.944 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:40:51.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:40:51.944 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:51.944 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:51.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 05:40:51.944 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:40:51.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:40:51.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:51.944 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:51.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 05:40:52.134 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:40:52.134 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:40:52.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37402 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-18 05:40:52.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:52.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170432206716871. ------
17-03-18 05:40:52.144 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:52.144 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17683 mm
17-03-18 05:40:52.144 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:52.144 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:52.144 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:40:52.144 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:40:52.144 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38628, sync = True, waitForSettling = False)
17-03-18 05:40:52.144 -07 000000437 INF: Z Motor: Moving to -0.176828 mm, started at -0.170432 mm, distance = -6.40 um
17-03-18 05:40:52.154 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:52.154 -07 000000437 INF: FPGA: Xmit ZDACW 38628\n [Z Motor]
17-03-18 05:40:52.154 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:40:52.164 -07 000000437 INF: FPGA: 'ZDACW 38628' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:40:52.164 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:52.164 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:40:52.174 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:52.174 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:40:52.174 -07 000000590 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:52.174 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:40:52.174 -07 000000590 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:40:52.184 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:52.184 -07 000000012 INF: FPGA: Recv ZDACR 38628
17-03-18 05:40:52.194 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:40:52.194 -07 000000437 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:40:52.194 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:40:52.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:40:52.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:40:52.344 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:40:52.344 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:52.344 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:40:52.344 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:52.354 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:52.354 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:40:52.354 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:40:52.354 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:40:52.374 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:52.374 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:40:52.564 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 05:40:52.564 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:40:52.614 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:52.624 -07 000000585 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:40:52.624 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 05:40:52.624 -07 000000590 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:52.624 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:40:52.624 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 05:40:53.574 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:53.574 -07 000000611 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:40:53.584 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:53.584 -07 000000590 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:53.614 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:53.614 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:40:53.614 -07 000000590 INF: Y Motor: Moved to 63.2227 after 1469 ms (table move)
17-03-18 05:40:53.614 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176828 mm (DAC = 38628)
17-03-18 05:40:53.614 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.624 -07 000000569 INF: FPGA: Recv ZSGSRD 36814
17-03-18 05:40:53.624 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 05:40:53.624 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.624 -07 000000590 INF: FPGA: Recv ZSGSRD 36817
17-03-18 05:40:53.634 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:40:53.634 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.634 -07 000000606 INF: FPGA: Recv ZSGSRD 36815
17-03-18 05:40:53.644 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.644 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36813
17-03-18 05:40:53.654 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.654 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.654 -07 000000611 INF: FPGA: Recv ZSGSRD 36816
17-03-18 05:40:53.664 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.664 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.664 -07 000000590 INF: FPGA: Recv ZSGSRD 36814
17-03-18 05:40:53.674 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.674 -07 000000487 INF: FPGA: Recv ZSGSRD 36817
17-03-18 05:40:53.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.684 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.684 -07 000000611 INF: FPGA: Recv ZSGSRD 36817
17-03-18 05:40:53.694 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:40:53.694 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.694 -07 000000569 INF: FPGA: Recv ZSGSRD 36819
17-03-18 05:40:53.704 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.704 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:53.704 -07 000000590 INF: FPGA: Recv ZSGSRD 36815
17-03-18 05:40:53.714 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.714 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:53.714 -07 000000569 INF: FPGA: Recv ZPIEZORD 32990
17-03-18 05:40:53.724 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.5 V.
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36816 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36816 (-175.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36813 (-175.9 uncal um), Max = 36819 (-176.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36816, posNoise = 3, negNoise = 3
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: After move to -0.176828, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: Settle wait time = 1472 ms, measure time = 102 ms (allowed 150 ms), total time = 1574 ms
17-03-18 05:40:53.724 -07 000000474 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:53.774 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:40:53.774 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:53.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:53.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:53.774 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:53.774 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:53.774 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:53.774 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:53.774 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:53.774 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:53.784 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:53.784 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:53.784 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:40:53.784 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:40:53.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:53.854 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:54.154 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:54.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:54.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:54.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) start.
17-03-18 05:40:54.194 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:54.194 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:54.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 05:40:54.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:40:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:40:54.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:40:54.294 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:54.294 -07 000000424 INF: Autofocus start
17-03-18 05:40:54.294 -07 000000424 INF: MeasureProfile start
17-03-18 05:40:54.294 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:54.304 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:40:54.304 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:54.304 -07 000000424 INF: MeasureProfile done
17-03-18 05:40:54.304 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:40:54.304 -07 000000424 INF: Autofocus finished
17-03-18 05:40:54.504 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:54.504 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:40:54.504 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176837146222206. ----------
17-03-18 05:40:54.504 -07 000000610 INF: Cycle	140	Tile	5	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:54.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37142, sync = True, waitForSettling = True)
17-03-18 05:40:54.514 -07 000000610 INF: Z Motor: Moving to -0.170025 mm, started at -0.176837 mm, distance = 6.81 um
17-03-18 05:40:54.514 -07 000000610 INF: FPGA: Xmit ZDACW 37142\n [Z Motor]
17-03-18 05:40:54.514 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:40:54.524 -07 000000610 INF: FPGA: 'ZDACW 37142' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:54.524 -07 000000424 INF: FPGA: Recv ZDACR 37142
17-03-18 05:40:54.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35755
17-03-18 05:40:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:40:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.704 -07 000000447 INF: FPGA: Recv ZSGSRD 35757
17-03-18 05:40:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.714 -07 000000611 INF: FPGA: Recv ZSGSRD 35761
17-03-18 05:40:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.724 -07 000000474 INF: FPGA: Recv ZSGSRD 35750
17-03-18 05:40:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.734 -07 000000606 INF: FPGA: Recv ZSGSRD 35756
17-03-18 05:40:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.744 -07 000000474 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:40:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35761
17-03-18 05:40:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.764 -07 000000487 INF: FPGA: Recv ZSGSRD 35756
17-03-18 05:40:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:54.774 -07 000000474 INF: FPGA: Recv ZSGSRD 35757
17-03-18 05:40:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:54.784 -07 000000474 INF: FPGA: Recv ZPIEZORD 31551
17-03-18 05:40:54.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:54.794 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.3 V.
17-03-18 05:40:54.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35757 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35757 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35750 (-169.1 uncal um), Max = 35761 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:40:54.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35757, posNoise = 4, negNoise = 7
17-03-18 05:40:54.794 -07 000000610 INF: Z Motor: After move to -0.170025, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:54.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:40:54.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:54.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:54.794 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:54.794 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:54.794 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:54.794 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:54.794 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:54.794 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:54.794 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:40:54.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:54.794 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:40:54.794 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:54.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:54.794 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:54.794 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:40:54.804 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:54.804 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:40:54.804 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:40:54.804 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:40:54.804 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:40:54.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37319 150\n [Camera]
17-03-18 05:40:55.014 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:55.454 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:55.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:55.454 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:55.454 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:55.454 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 05:40:55.454 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:55.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:55.464 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:55.464 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:55.464 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 05:40:55.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37319 828
17-03-18 05:40:55.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:55.844 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:40:55.844 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:40:55.844 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:55.854 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:55.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:40:55.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:40:55.854 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:55.854 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:55.854 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:40:55.854 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:40:56.014 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:40:56.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:40:56.014 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:56.154 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:40:56.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:40:56.154 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:56.154 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:56.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 05:40:56.154 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:56.154 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:40:56.204 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:40:56.204 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:40:56.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37319 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-18 05:40:56.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:40:56.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170033905564081. ------
17-03-18 05:40:56.204 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:56.204 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17632 mm
17-03-18 05:40:56.204 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:40:56.214 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:56.214 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:40:56.214 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:40:56.214 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:40:56.214 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38518, sync = True, waitForSettling = False)
17-03-18 05:40:56.214 -07 000000611 INF: Z Motor: Moving to -0.176324 mm, started at -0.170034 mm, distance = -6.29 um
17-03-18 05:40:56.214 -07 000000474 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:40:56.224 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:56.224 -07 000000590 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:40:56.234 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:40:56.234 -07 000000474 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:56.234 -07 000000611 INF: FPGA: Xmit ZDACW 38518\n [Z Motor]
17-03-18 05:40:56.234 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:40:56.234 -07 000000474 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:40:56.234 -07 000000474 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:40:56.244 -07 000000611 INF: FPGA: 'ZDACW 38518' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:40:56.244 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:40:56.254 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:56.254 -07 000000585 INF: FPGA: Recv ZDACR 38518
17-03-18 05:40:56.264 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:40:56.264 -07 000000611 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:40:56.414 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:40:56.414 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 05:40:56.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:40:56.554 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:40:56.554 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:56.554 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:56.554 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:40:56.554 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:40:56.554 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:56.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:56.554 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 545 ms.
17-03-18 05:40:56.564 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:40:56.614 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:40:56.614 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 05:40:56.664 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.011254,
17-03-18 05:40:56.694 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:56.694 -07 000000606 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:40:56.704 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:40:56.704 -07 000000474 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:56.704 -07 000000474 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:40:56.704 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.840 mm, average velocity = 2.199 mm/sec
17-03-18 05:40:56.784 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:40:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:40:57.654 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:40:57.654 -07 000000437 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:40:57.664 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:57.664 -07 000000474 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:40:57.694 -07 000000474 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:40:57.694 -07 000000474 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:40:57.694 -07 000000474 INF: Y Motor: Moved to 64.0562 after 1477 ms (table move)
17-03-18 05:40:57.694 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176324 mm (DAC = 38518)
17-03-18 05:40:57.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.694 -07 000000585 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:40:57.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:57.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.704 -07 000000606 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:40:57.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.714 -07 000000487 INF: FPGA: Recv ZSGSRD 36730
17-03-18 05:40:57.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.724 -07 000000447 INF: FPGA: Recv ZSGSRD 36730
17-03-18 05:40:57.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.734 -07 000000487 INF: FPGA: Recv ZSGSRD 36742
17-03-18 05:40:57.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.744 -07 000000618 INF: FPGA: Recv ZSGSRD 36741
17-03-18 05:40:57.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.754 -07 000000606 INF: FPGA: Recv ZSGSRD 36736
17-03-18 05:40:57.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.764 -07 000000585 INF: FPGA: Recv ZSGSRD 36735
17-03-18 05:40:57.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.774 -07 000000585 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:40:57.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:57.784 -07 000000585 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:40:57.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.794 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:57.794 -07 000000585 INF: FPGA: Recv ZPIEZORD 32887
17-03-18 05:40:57.804 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.5 V.
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36737 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36737 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36730 (-175.4 uncal um), Max = 36742 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36737, posNoise = 5, negNoise = 7
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: After move to -0.176324, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: Settle wait time = 1481 ms, measure time = 105 ms (allowed 150 ms), total time = 1586 ms
17-03-18 05:40:57.804 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:40:57.854 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 05:40:57.854 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:40:57.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:57.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:57.854 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:57.854 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:57.854 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:40:57.854 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:57.854 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:57.864 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:40:57.864 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:40:57.864 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:40:57.864 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:40:57.864 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:40:57.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:40:57.914 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:40:58.214 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:40:58.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:40:58.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:40:58.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:40:58.254 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:40:58.254 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:40:58.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:40:58.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:40:58.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:58.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:40:58.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:40:58.354 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:40:58.354 -07 000000606 INF: Autofocus start
17-03-18 05:40:58.354 -07 000000606 INF: MeasureProfile start
17-03-18 05:40:58.354 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:40:58.364 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:40:58.364 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:40:58.364 -07 000000606 INF: MeasureProfile done
17-03-18 05:40:58.364 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:40:58.364 -07 000000606 INF: Autofocus finished
17-03-18 05:40:58.564 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:40:58.564 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:40:58.564 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176329633463007. ----------
17-03-18 05:40:58.564 -07 000000610 INF: Cycle	140	Tile	6	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:40:58.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37015, sync = True, waitForSettling = True)
17-03-18 05:40:58.574 -07 000000610 INF: Z Motor: Moving to -0.169444 mm, started at -0.176330 mm, distance = 6.89 um
17-03-18 05:40:58.574 -07 000000610 INF: FPGA: Xmit ZDACW 37015\n [Z Motor]
17-03-18 05:40:58.574 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:40:58.584 -07 000000610 INF: FPGA: 'ZDACW 37015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:40:58.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:40:58.584 -07 000000611 INF: FPGA: Recv ZDACR 37015
17-03-18 05:40:58.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:40:58.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.744 -07 000000424 INF: FPGA: Recv ZSGSRD 35662
17-03-18 05:40:58.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:58.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.754 -07 000000611 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:40:58.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.764 -07 000000606 INF: FPGA: Recv ZSGSRD 35666
17-03-18 05:40:58.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.774 -07 000000424 INF: FPGA: Recv ZSGSRD 35661
17-03-18 05:40:58.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:40:58.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.784 -07 000000611 INF: FPGA: Recv ZSGSRD 35674
17-03-18 05:40:58.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35663
17-03-18 05:40:58.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.804 -07 000000447 INF: FPGA: Recv ZSGSRD 35673
17-03-18 05:40:58.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35672
17-03-18 05:40:58.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.824 -07 000000424 INF: FPGA: Recv ZSGSRD 35660
17-03-18 05:40:58.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:40:58.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35668
17-03-18 05:40:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:40:58.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:40:58.854 -07 000000447 INF: FPGA: Recv ZPIEZORD 31471
17-03-18 05:40:58.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:40:58.864 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.3 V.
17-03-18 05:40:58.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35667 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35667 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35660 (-168.5 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:40:58.864 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35667, posNoise = 7, negNoise = 7
17-03-18 05:40:58.864 -07 000000610 INF: Z Motor: After move to -0.169444, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:40:58.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:40:58.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:40:58.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:40:58.864 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:40:58.864 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:40:58.864 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:40:58.864 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:40:58.864 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:40:58.864 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:40:58.864 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:40:58.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:40:58.874 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:40:58.874 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:40:58.874 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:40:58.874 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:40:58.874 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:40:58.874 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:40:58.884 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:40:58.884 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:40:58.884 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:40:58.884 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:40:58.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37192 150\n [Camera]
17-03-18 05:40:59.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:40:59.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:40:59.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:40:59.534 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:40:59.534 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:40:59.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:40:59.534 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:40:59.544 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 05:40:59.544 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:40:59.544 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:40:59.544 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:40:59.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37192 829
17-03-18 05:40:59.874 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:40:59.934 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:40:59.934 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:40:59.934 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:59.934 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:59.934 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:40:59.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:40:59.944 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:40:59.944 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:40:59.944 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:40:59.954 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:41:00.094 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:00.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:00.094 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:00.094 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:00.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:00.094 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:00.214 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:00.214 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:41:00.214 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:00.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:41:00.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:41:00.284 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:00.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37192 150' command took 2 ms to send, 1381 ms to get response, and 1390 ms overall
17-03-18 05:41:00.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:00.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169455726471323. ------
17-03-18 05:41:00.284 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:00.284 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17582 mm
17-03-18 05:41:00.284 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:00.294 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:41:00.294 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:41:00.294 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:00.294 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:00.294 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:41:00.294 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38408, sync = True, waitForSettling = False)
17-03-18 05:41:00.294 -07 000000474 INF: Z Motor: Moving to -0.175821 mm, started at -0.169456 mm, distance = -6.36 um
17-03-18 05:41:00.294 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:41:00.304 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:00.304 -07 000000611 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:00.304 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:00.304 -07 000000611 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:41:00.304 -07 000000474 INF: FPGA: Xmit ZDACW 38408\n [Z Motor]
17-03-18 05:41:00.304 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:41:00.314 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:00.314 -07 000000474 INF: FPGA: 'ZDACW 38408' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:41:00.324 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:00.334 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:00.334 -07 000000585 INF: FPGA: Recv ZDACR 38408
17-03-18 05:41:00.344 -07 000000474 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:00.344 -07 000000474 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:41:00.514 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:00.514 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:41:00.614 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:41:00.614 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:41:00.614 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:00.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:41:00.614 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:41:00.614 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:00.624 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:00.624 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:00.624 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 05:41:00.624 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 05:41:00.704 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:41:00.704 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 05:41:00.754 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:00.754 -07 000000424 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:41:00.764 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:00.764 -07 000000611 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:00.764 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:41:00.764 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.836 mm, average velocity = 2.091 mm/sec
17-03-18 05:41:01.714 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:01.714 -07 000000585 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:41:01.724 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.724 -07 000000611 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:01.754 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:01.754 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:01.754 -07 000000611 INF: Y Motor: Moved to 64.8779 after 1461 ms (table move)
17-03-18 05:41:01.754 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175821 mm (DAC = 38408)
17-03-18 05:41:01.754 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.754 -07 000000606 INF: FPGA: Recv ZSGSRD 36659
17-03-18 05:41:01.764 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:01.764 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.764 -07 000000606 INF: FPGA: Recv ZSGSRD 36654
17-03-18 05:41:01.774 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.774 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.774 -07 000000424 INF: FPGA: Recv ZSGSRD 36660
17-03-18 05:41:01.784 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.784 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.784 -07 000000424 INF: FPGA: Recv ZSGSRD 36661
17-03-18 05:41:01.784 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:01.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:01.794 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.794 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.794 -07 000000629 INF: FPGA: Recv ZSGSRD 36661
17-03-18 05:41:01.804 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.804 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.804 -07 000000444 INF: FPGA: Recv ZSGSRD 36665
17-03-18 05:41:01.814 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.814 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.814 -07 000000606 INF: FPGA: Recv ZSGSRD 36662
17-03-18 05:41:01.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.824 -07 000000606 INF: FPGA: Recv ZSGSRD 36653
17-03-18 05:41:01.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.834 -07 000000424 INF: FPGA: Recv ZSGSRD 36653
17-03-18 05:41:01.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.844 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:01.844 -07 000000424 INF: FPGA: Recv ZSGSRD 36656
17-03-18 05:41:01.854 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.854 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:01.854 -07 000000424 INF: FPGA: Recv ZPIEZORD 32765
17-03-18 05:41:01.864 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.6 V.
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36658 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36653 (-174.9 uncal um), Max = 36665 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36658, posNoise = 7, negNoise = 5
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: After move to -0.175821, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:41:01.864 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:01.914 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 05:41:01.914 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:01.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:01.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:01.914 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:01.914 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:01.914 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:01.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:01.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:01.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:01.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:01.924 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:01.934 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:41:01.934 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:41:01.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:01.984 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:02.044 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.016692,
17-03-18 05:41:02.284 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:02.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:02.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:02.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:41:02.324 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:02.324 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:02.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:41:02.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:41:02.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:02.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:02.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:41:02.424 -07 000000585 INF: Autofocus start
17-03-18 05:41:02.424 -07 000000585 INF: MeasureProfile start
17-03-18 05:41:02.424 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:02.424 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:02.434 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:02.434 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:02.434 -07 000000585 INF: MeasureProfile done
17-03-18 05:41:02.434 -07 000000585 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:41:02.434 -07 000000585 INF: Autofocus finished
17-03-18 05:41:02.634 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:02.634 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:02.634 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.175822120703808. ----------
17-03-18 05:41:02.644 -07 000000610 INF: Cycle	140	Tile	7	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:02.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36940, sync = True, waitForSettling = True)
17-03-18 05:41:02.644 -07 000000610 INF: Z Motor: Moving to -0.169100 mm, started at -0.175822 mm, distance = 6.72 um
17-03-18 05:41:02.644 -07 000000610 INF: FPGA: Xmit ZDACW 36940\n [Z Motor]
17-03-18 05:41:02.644 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:41:02.654 -07 000000610 INF: FPGA: 'ZDACW 36940' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:02.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:02.654 -07 000000585 INF: FPGA: Recv ZDACR 36940
17-03-18 05:41:02.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35608
17-03-18 05:41:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:41:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.834 -07 000000611 INF: FPGA: Recv ZSGSRD 35619
17-03-18 05:41:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35606
17-03-18 05:41:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.854 -07 000000447 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:41:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.864 -07 000000606 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:41:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.874 -07 000000611 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:41:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35612
17-03-18 05:41:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.894 -07 000000606 INF: FPGA: Recv ZSGSRD 35609
17-03-18 05:41:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:02.904 -07 000000447 INF: FPGA: Recv ZSGSRD 35619
17-03-18 05:41:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:02.914 -07 000000606 INF: FPGA: Recv ZPIEZORD 31394
17-03-18 05:41:02.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:02.924 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 05:41:02.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35613 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35613 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:41:02.924 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35613, posNoise = 6, negNoise = 7
17-03-18 05:41:02.924 -07 000000610 INF: Z Motor: After move to -0.169100, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:02.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:41:02.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:02.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:02.924 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:02.924 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:02.924 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:02.924 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:02.924 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:41:02.924 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:02.924 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:02.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:02.934 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:02.934 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:02.934 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:41:02.934 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:02.934 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:02.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:02.944 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:41:02.944 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:41:02.944 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:41:02.944 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:41:02.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37117 150\n [Camera]
17-03-18 05:41:03.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:03.584 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:03.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:03.584 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:03.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:03.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:03.594 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:03.594 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:03.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) start.
17-03-18 05:41:03.594 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:03.594 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:41:03.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37117 828
17-03-18 05:41:03.934 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:03.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:41:03.974 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:41:03.974 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:03.974 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:41:03.974 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:41:03.974 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:03.974 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:03.974 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:41:03.984 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:41:03.984 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:41:04.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:04.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:04.144 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:04.144 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:04.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:04.144 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:04.144 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:41:04.144 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:04.144 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:04.144 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:41:04.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:41:04.334 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:04.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37117 150' command took 2 ms to send, 1386 ms to get response, and 1390 ms overall
17-03-18 05:41:04.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:04.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169108819015668. ------
17-03-18 05:41:04.344 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:04.344 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17589 mm
17-03-18 05:41:04.344 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:04.454 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:04.454 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-18 05:41:04.454 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:04.454 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:41:04.454 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:41:04.454 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38422, sync = True, waitForSettling = False)
17-03-18 05:41:04.454 -07 000000629 INF: Z Motor: Moving to -0.175885 mm, started at -0.169109 mm, distance = -6.78 um
17-03-18 05:41:04.464 -07 000000629 INF: FPGA: Xmit ZDACW 38422\n [Z Motor]
17-03-18 05:41:04.464 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:41:04.474 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:04.474 -07 000000629 INF: FPGA: 'ZDACW 38422' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:04.474 -07 000000474 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:41:04.484 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:41:04.484 -07 000000618 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:04.484 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:04.484 -07 000000585 INF: FPGA: Recv ZDACR 38422
17-03-18 05:41:04.484 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:04.484 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:41:04.494 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:04.494 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:04.494 -07 000000629 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 05:41:04.524 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:41:04.524 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:41:04.524 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:04.534 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:41:04.534 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:41:04.534 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:04.534 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:04.534 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:04.534 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:41:04.544 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:41:04.664 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:04.664 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 05:41:04.874 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:41:04.874 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 386 ms overall
17-03-18 05:41:04.924 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:04.924 -07 000000424 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:41:04.934 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:04.934 -07 000000618 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:04.934 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:41:04.934 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-18 05:41:05.884 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:05.884 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:41:05.894 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:05.894 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:05.924 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:05.924 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:41:05.924 -07 000000618 INF: Y Motor: Moved to 65.7134 after 1469 ms (table move)
17-03-18 05:41:05.934 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175885 mm (DAC = 38422)
17-03-18 05:41:05.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.934 -07 000000611 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:41:05.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:05.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.944 -07 000000437 INF: FPGA: Recv ZSGSRD 36671
17-03-18 05:41:05.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:05.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36663
17-03-18 05:41:05.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:05.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.964 -07 000000437 INF: FPGA: Recv ZSGSRD 36664
17-03-18 05:41:05.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:05.974 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.974 -07 000000447 INF: FPGA: Recv ZSGSRD 36667
17-03-18 05:41:05.984 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:05.984 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.984 -07 000000611 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:41:05.994 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:05.994 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:05.994 -07 000000618 INF: FPGA: Recv ZSGSRD 36672
17-03-18 05:41:06.004 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.004 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:06.004 -07 000000474 INF: FPGA: Recv ZSGSRD 36662
17-03-18 05:41:06.014 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.014 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:06.014 -07 000000437 INF: FPGA: Recv ZSGSRD 36681
17-03-18 05:41:06.024 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.024 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:06.024 -07 000000474 INF: FPGA: Recv ZSGSRD 36670
17-03-18 05:41:06.034 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.034 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:06.034 -07 000000424 INF: FPGA: Recv ZPIEZORD 32828
17-03-18 05:41:06.044 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.5 V.
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36670 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36662 (-175.0 uncal um), Max = 36681 (-175.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36670, posNoise = 11, negNoise = 8
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: After move to -0.175885, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: Settle wait time = 1473 ms, measure time = 108 ms (allowed 150 ms), total time = 1581 ms
17-03-18 05:41:06.044 -07 000000606 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:06.094 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1747 ms
17-03-18 05:41:06.094 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:06.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:06.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:06.094 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:06.094 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:06.094 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:06.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:06.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:41:06.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:06.104 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:06.104 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:06.104 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:41:06.104 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:41:06.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:06.154 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:06.454 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:06.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:06.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:06.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:06.494 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:06.494 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:06.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:41:06.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:41:06.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:06.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:06.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:41:06.594 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:06.594 -07 000000611 INF: Autofocus start
17-03-18 05:41:06.594 -07 000000611 INF: MeasureProfile start
17-03-18 05:41:06.594 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:06.604 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:06.604 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:06.604 -07 000000611 INF: MeasureProfile done
17-03-18 05:41:06.604 -07 000000611 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:06.604 -07 000000611 INF: Autofocus finished
17-03-18 05:41:06.784 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:06.804 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:06.804 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:06.804 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175899211249509. ----------
17-03-18 05:41:06.804 -07 000000610 INF: Cycle	140	Tile	8	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:06.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True)
17-03-18 05:41:06.814 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.175899 mm, distance = 6.81 um
17-03-18 05:41:06.814 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor]
17-03-18 05:41:06.814 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:41:06.824 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:06.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:06.824 -07 000000618 INF: FPGA: Recv ZDACR 36937
17-03-18 05:41:06.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:06.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:06.984 -07 000000606 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:41:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:06.994 -07 000000611 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:41:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.004 -07 000000474 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:41:07.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.014 -07 000000618 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:41:07.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:41:07.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.034 -07 000000611 INF: FPGA: Recv ZSGSRD 35610
17-03-18 05:41:07.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.044 -07 000000474 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:41:07.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35604
17-03-18 05:41:07.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:41:07.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:07.074 -07 000000437 INF: FPGA: Recv ZSGSRD 35609
17-03-18 05:41:07.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:07.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:07.094 -07 000000606 INF: FPGA: Recv ZPIEZORD 31439
17-03-18 05:41:07.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:07.104 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.2 V.
17-03-18 05:41:07.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35611 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35615 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:41:07.104 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35611, posNoise = 4, negNoise = 7
17-03-18 05:41:07.104 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:07.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:41:07.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:07.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:07.104 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:07.104 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:07.104 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:07.104 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:07.104 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:07.104 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:07.104 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:41:07.104 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:07.104 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:07.104 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:07.114 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:41:07.114 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:07.114 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:07.114 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:07.124 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:07.124 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:07.124 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:07.124 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:41:07.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37114 150\n [Camera]
17-03-18 05:41:07.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:07.404 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.970374,
17-03-18 05:41:07.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:07.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:07.764 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:07.764 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:07.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:07.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:07.774 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:07.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:07.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:07.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:07.954 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 828
17-03-18 05:41:08.104 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:08.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:41:08.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:41:08.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:08.164 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:08.164 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:41:08.164 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:41:08.164 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:08.164 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:08.164 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:41:08.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:41:08.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:08.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:08.324 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:08.324 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:08.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:08.324 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:08.324 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:08.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:41:08.334 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:08.334 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:41:08.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:08.514 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:08.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37114 150' command took 2 ms to send, 1384 ms to get response, and 1391 ms overall
17-03-18 05:41:08.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:08.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169095970591384. ------
17-03-18 05:41:08.514 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:08.514 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17541 mm
17-03-18 05:41:08.514 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:08.524 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:41:08.524 -07 000000437 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:41:08.524 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:08.524 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:08.524 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:08.524 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38319, sync = True, waitForSettling = False)
17-03-18 05:41:08.524 -07 000000606 INF: Z Motor: Moving to -0.175413 mm, started at -0.169096 mm, distance = -6.32 um
17-03-18 05:41:08.524 -07 000000629 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:41:08.534 -07 000000606 INF: FPGA: Xmit ZDACW 38319\n [Z Motor]
17-03-18 05:41:08.534 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:08.534 -07 000000437 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:08.534 -07 000000437 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:08.534 -07 000000437 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:41:08.534 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:41:08.544 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:08.544 -07 000000606 INF: FPGA: 'ZDACW 38319' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:41:08.554 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:08.564 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:08.564 -07 000000618 INF: FPGA: Recv ZDACR 38319
17-03-18 05:41:08.574 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:08.574 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:41:08.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:41:08.724 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:41:08.724 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:08.734 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:41:08.734 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:41:08.734 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:08.734 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:08.734 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:41:08.734 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:08.744 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:41:08.744 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:08.744 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:41:08.924 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:41:08.924 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:41:08.974 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:08.984 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:41:08.984 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:41:08.984 -07 000000437 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:08.984 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:41:08.984 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:41:09.934 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:09.934 -07 000000611 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:41:09.944 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:09.944 -07 000000437 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:09.974 -07 000000437 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:09.974 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:09.974 -07 000000437 INF: Y Motor: Moved to 66.5381 after 1453 ms (table move)
17-03-18 05:41:09.974 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175413 mm (DAC = 38319)
17-03-18 05:41:09.974 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:09.984 -07 000000579 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:41:09.984 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:41:09.984 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:09.984 -07 000000424 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:41:09.994 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:09.994 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:09.994 -07 000000579 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:41:10.004 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.004 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.004 -07 000000424 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:41:10.014 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.014 -07 000000012 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:41:10.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.024 -07 000000424 INF: FPGA: Recv ZSGSRD 36595
17-03-18 05:41:10.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.034 -07 000000618 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:41:10.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.044 -07 000000424 INF: FPGA: Recv ZSGSRD 36599
17-03-18 05:41:10.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.054 -07 000000629 INF: FPGA: Recv ZSGSRD 36595
17-03-18 05:41:10.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:10.064 -07 000000424 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:41:10.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.074 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:10.074 -07 000000012 INF: FPGA: Recv ZPIEZORD 32738
17-03-18 05:41:10.084 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.5 V.
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36596 (-174.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36591 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 3, negNoise = 5
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: After move to -0.175413, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: Settle wait time = 1455 ms, measure time = 103 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:41:10.084 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:10.134 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:41:10.134 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:10.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:10.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:10.134 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:10.134 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:10.134 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:10.134 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:10.134 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:10.134 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:10.144 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:10.144 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:10.144 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:10.144 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:41:10.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:10.194 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:10.494 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:10.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:10.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:10.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:41:10.534 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:10.534 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:10.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:41:10.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:41:10.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:10.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:10.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:41:10.634 -07 000000590 INF: Autofocus start
17-03-18 05:41:10.634 -07 000000590 INF: MeasureProfile start
17-03-18 05:41:10.634 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:10.634 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:10.644 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:10.644 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:10.644 -07 000000590 INF: MeasureProfile done
17-03-18 05:41:10.644 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:10.644 -07 000000590 INF: Autofocus finished
17-03-18 05:41:10.844 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:10.844 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:10.844 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175423819551019. ----------
17-03-18 05:41:10.844 -07 000000610 INF: Cycle	140	Tile	9	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:10.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36834, sync = True, waitForSettling = True)
17-03-18 05:41:10.854 -07 000000610 INF: Z Motor: Moving to -0.168615 mm, started at -0.175424 mm, distance = 6.81 um
17-03-18 05:41:10.854 -07 000000610 INF: FPGA: Xmit ZDACW 36834\n [Z Motor]
17-03-18 05:41:10.854 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:41:10.864 -07 000000610 INF: FPGA: 'ZDACW 36834' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:10.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:10.864 -07 000000618 INF: FPGA: Recv ZDACR 36834
17-03-18 05:41:10.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:10.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.024 -07 000000424 INF: FPGA: Recv ZSGSRD 35535
17-03-18 05:41:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.034 -07 000000629 INF: FPGA: Recv ZSGSRD 35540
17-03-18 05:41:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.044 -07 000000618 INF: FPGA: Recv ZSGSRD 35534
17-03-18 05:41:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.054 -07 000000012 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:41:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.064 -07 000000629 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:41:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:41:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:41:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35535
17-03-18 05:41:11.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:41:11.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:11.114 -07 000000012 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:41:11.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:11.124 -07 000000629 INF: FPGA: Recv ZPIEZORD 31320
17-03-18 05:41:11.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:11.134 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 05:41:11.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35537 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35537 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35531 (-167.7 uncal um), Max = 35541 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:11.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35537, posNoise = 4, negNoise = 6
17-03-18 05:41:11.134 -07 000000610 INF: Z Motor: After move to -0.168615, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:11.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:41:11.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:11.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:11.134 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:11.134 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:11.134 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:11.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:11.134 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:11.134 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:11.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:11.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:11.134 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:41:11.134 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:11.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:11.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:11.144 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:11.144 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:11.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:41:11.154 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:11.154 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:11.154 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:11.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37011 150\n [Camera]
17-03-18 05:41:11.354 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:11.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:11.794 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:11.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:11.794 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:11.794 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:11.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:41:11.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:11.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:11.794 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:11.794 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:11.794 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:41:11.984 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37011 828
17-03-18 05:41:12.134 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:12.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:41:12.184 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:41:12.184 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:12.184 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:41:12.184 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:41:12.184 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:12.184 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:12.184 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:41:12.194 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:12.194 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:41:12.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:12.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:12.354 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:12.354 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:12.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:41:12.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:12.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:12.354 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:12.354 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:12.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:41:12.544 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:12.544 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:12.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37011 150' command took 2 ms to send, 1383 ms to get response, and 1391 ms overall
17-03-18 05:41:12.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:12.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168620578892894. ------
17-03-18 05:41:12.664 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:12.664 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17538 mm
17-03-18 05:41:12.664 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:12.664 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:12.664 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:41:12.664 -07 000000474 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 05:41:12.664 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38311, sync = True, waitForSettling = False)
17-03-18 05:41:12.664 -07 000000590 INF: Z Motor: Moving to -0.175377 mm, started at -0.168621 mm, distance = -6.76 um
17-03-18 05:41:12.674 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:12.674 -07 000000590 INF: FPGA: Xmit ZDACW 38311\n [Z Motor]
17-03-18 05:41:12.674 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:41:12.684 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:12.684 -07 000000590 INF: FPGA: 'ZDACW 38311' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:12.684 -07 000000444 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:41:12.694 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:12.694 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:41:12.694 -07 000000474 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:12.694 -07 000000474 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:12.694 -07 000000474 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:41:12.704 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:12.704 -07 000000569 INF: FPGA: Recv ZDACR 38311
17-03-18 05:41:12.714 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:12.714 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:12.714 -07 000000590 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:41:12.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:41:12.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:41:12.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:12.754 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:41:12.754 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:41:12.754 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:12.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:12.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:41:12.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:41:12.764 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.004458,
17-03-18 05:41:12.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:41:12.894 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:12.894 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:41:13.084 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:41:13.084 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:41:13.134 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:13.144 -07 000000611 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:41:13.144 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:13.144 -07 000000474 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:13.144 -07 000000474 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:41:13.144 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 05:41:14.094 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:14.094 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:41:14.104 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:14.104 -07 000000474 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:14.134 -07 000000474 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:14.134 -07 000000474 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:14.134 -07 000000474 INF: Y Motor: Moved to 67.3711 after 1464 ms (table move)
17-03-18 05:41:14.134 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175377 mm (DAC = 38311)
17-03-18 05:41:14.134 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.144 -07 000000579 INF: FPGA: Recv ZSGSRD 36592
17-03-18 05:41:14.144 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:41:14.144 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.144 -07 000000444 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:41:14.154 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.154 -07 000000424 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:41:14.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.164 -07 000000447 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:41:14.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.174 -07 000000437 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:41:14.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.184 -07 000000487 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:41:14.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.194 -07 000000474 INF: FPGA: Recv ZSGSRD 36587
17-03-18 05:41:14.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.204 -07 000000455 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:41:14.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.214 -07 000000579 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:41:14.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:14.224 -07 000000591 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:41:14.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.234 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:14.234 -07 000000590 INF: FPGA: Recv ZPIEZORD 32709
17-03-18 05:41:14.244 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36592 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36592 (-174.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36596 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36592, posNoise = 4, negNoise = 5
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: After move to -0.175377, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:41:14.244 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:14.294 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:41:14.294 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:14.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:14.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:14.294 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:14.294 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:14.294 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:14.294 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:14.294 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:14.294 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:14.304 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:14.304 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:14.314 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:41:14.314 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:41:14.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:14.364 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:14.664 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:14.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:14.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:14.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:14.694 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:14.704 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:14.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:41:14.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:41:14.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:14.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:14.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:41:14.804 -07 000000629 INF: Autofocus start
17-03-18 05:41:14.804 -07 000000629 INF: MeasureProfile start
17-03-18 05:41:14.804 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:14.804 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:14.814 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:14.814 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:14.814 -07 000000629 INF: MeasureProfile done
17-03-18 05:41:14.814 -07 000000629 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:41:14.814 -07 000000629 INF: Autofocus finished
17-03-18 05:41:15.014 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:15.014 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:15.014 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175398122702452. ----------
17-03-18 05:41:15.014 -07 000000610 INF: Cycle	140	Tile	10	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:15.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36791, sync = True, waitForSettling = True)
17-03-18 05:41:15.024 -07 000000610 INF: Z Motor: Moving to -0.168418 mm, started at -0.175398 mm, distance = 6.98 um
17-03-18 05:41:15.024 -07 000000610 INF: FPGA: Xmit ZDACW 36791\n [Z Motor]
17-03-18 05:41:15.024 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:41:15.034 -07 000000610 INF: FPGA: 'ZDACW 36791' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:15.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:15.034 -07 000000487 INF: FPGA: Recv ZDACR 36791
17-03-18 05:41:15.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:15.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.194 -07 000000569 INF: FPGA: Recv ZSGSRD 35504
17-03-18 05:41:15.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:15.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.204 -07 000000591 INF: FPGA: Recv ZSGSRD 35510
17-03-18 05:41:15.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35500
17-03-18 05:41:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.234 -07 000000444 INF: FPGA: Recv ZSGSRD 35509
17-03-18 05:41:15.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35502
17-03-18 05:41:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.264 -07 000000611 INF: FPGA: Recv ZSGSRD 35510
17-03-18 05:41:15.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:15.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35509
17-03-18 05:41:15.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:15.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35505
17-03-18 05:41:15.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.314 -07 000000590 INF: FPGA: Recv ZSGSRD 35504
17-03-18 05:41:15.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:15.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:15.324 -07 000000590 INF: FPGA: Recv ZSGSRD 35506
17-03-18 05:41:15.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:15.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:15.344 -07 000000487 INF: FPGA: Recv ZPIEZORD 31271
17-03-18 05:41:15.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:15.354 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.3 V.
17-03-18 05:41:15.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35506 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35506 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35500 (-167.5 uncal um), Max = 35510 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:15.354 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35506, posNoise = 4, negNoise = 6
17-03-18 05:41:15.354 -07 000000610 INF: Z Motor: After move to -0.168418, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:15.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 335 ms)
17-03-18 05:41:15.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:15.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:15.374 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:15.374 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:15.374 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:15.374 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:15.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:15.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:15.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:15.374 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:15.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:15.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:15.374 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:15.374 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:15.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:15.374 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:15.384 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:15.384 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:15.384 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:15.384 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:15.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36968 150\n [Camera]
17-03-18 05:41:15.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:16.034 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 636
17-03-18 05:41:16.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 636
17-03-18 05:41:16.034 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:16.034 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:41:16.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:41:16.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:16.034 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:16.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:16.044 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:16.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:41:16.224 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36968 828
17-03-18 05:41:16.374 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:16.414 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:41:16.414 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:41:16.414 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:16.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:41:16.414 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:41:16.414 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:16.414 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:16.414 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:41:16.424 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:16.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:41:16.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:16.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:16.584 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:16.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:16.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:16.594 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:16.594 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:16.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:41:16.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:16.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:41:16.774 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:16.774 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:16.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36968 150' command took 2 ms to send, 1378 ms to get response, and 1391 ms overall
17-03-18 05:41:16.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:16.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.1684214283165. ------
17-03-18 05:41:16.784 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:16.784 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17465 mm
17-03-18 05:41:16.784 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:16.904 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:41:16.904 -07 000000487 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:41:16.904 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:16.984 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:41:16.984 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:41:16.984 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:16.984 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:41:16.984 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:41:16.984 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:16.994 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:16.994 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:16.994 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:41:16.994 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:41:17.004 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38153, sync = True, waitForSettling = False)
17-03-18 05:41:17.004 -07 000000501 INF: Z Motor: Moving to -0.174653 mm, started at -0.168421 mm, distance = -6.23 um
17-03-18 05:41:17.004 -07 000000501 INF: FPGA: Xmit ZDACW 38153\n [Z Motor]
17-03-18 05:41:17.004 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:17.004 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:17.004 -07 000000579 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:41:17.004 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 99 ms to get response, and 101 ms overall
17-03-18 05:41:17.004 -07 000000487 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:17.004 -07 000000487 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:17.004 -07 000000487 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:41:17.014 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:41:17.014 -07 000000501 INF: FPGA: 'ZDACW 38153' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:41:17.014 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 102 ms to get response, and 225 ms overall
17-03-18 05:41:17.014 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:17.014 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:17.024 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:17.024 -07 000000579 INF: FPGA: Recv ZDACR 38153
17-03-18 05:41:17.034 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:17.034 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 05:41:17.034 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:17.234 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:17.234 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:41:17.384 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:41:17.384 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 379 ms overall
17-03-18 05:41:17.434 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:17.444 -07 000000579 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:41:17.444 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:41:17.444 -07 000000487 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:17.444 -07 000000487 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:41:17.444 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.842 mm, average velocity = 2.220 mm/sec
17-03-18 05:41:18.124 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.027603,
17-03-18 05:41:18.394 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:18.394 -07 000000424 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:41:18.404 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.404 -07 000000487 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:18.434 -07 000000487 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:18.434 -07 000000487 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:18.434 -07 000000487 INF: Y Motor: Moved to 68.2041 after 1523 ms (table move)
17-03-18 05:41:18.434 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174653 mm (DAC = 38153)
17-03-18 05:41:18.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.434 -07 000000424 INF: FPGA: Recv ZSGSRD 36480
17-03-18 05:41:18.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:18.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.444 -07 000000590 INF: FPGA: Recv ZSGSRD 36471
17-03-18 05:41:18.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.454 -07 000000474 INF: FPGA: Recv ZSGSRD 36474
17-03-18 05:41:18.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.464 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:41:18.474 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.474 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.474 -07 000000487 INF: FPGA: Recv ZSGSRD 36481
17-03-18 05:41:18.484 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.484 -07 000000590 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:41:18.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.494 -07 000000611 INF: FPGA: Recv ZSGSRD 36477
17-03-18 05:41:18.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.504 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.504 -07 000000590 INF: FPGA: Recv ZSGSRD 36477
17-03-18 05:41:18.514 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.514 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.514 -07 000000611 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:41:18.524 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.524 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:18.524 -07 000000579 INF: FPGA: Recv ZSGSRD 36471
17-03-18 05:41:18.534 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.534 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:18.534 -07 000000611 INF: FPGA: Recv ZPIEZORD 32562
17-03-18 05:41:18.544 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.7 V.
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36476 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36476 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36471 (-173.7 uncal um), Max = 36481 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36476, posNoise = 5, negNoise = 5
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: After move to -0.174653, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-18 05:41:18.544 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:18.594 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms
17-03-18 05:41:18.594 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:18.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:18.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:18.594 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:18.594 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:18.594 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:18.594 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:18.594 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:18.594 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:18.604 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:18.604 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:18.604 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:41:18.604 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:41:18.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:18.654 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:18.954 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:18.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:18.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:18.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:18.994 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:18.994 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:18.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:41:19.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:41:19.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:19.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:19.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:41:19.094 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:19.094 -07 000000474 INF: Autofocus start
17-03-18 05:41:19.094 -07 000000474 INF: MeasureProfile start
17-03-18 05:41:19.094 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:19.104 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:19.104 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:19.104 -07 000000474 INF: MeasureProfile done
17-03-18 05:41:19.104 -07 000000474 INF: X=64  Z correction [um]=0.2557664
17-03-18 05:41:19.104 -07 000000474 INF: Autofocus finished
17-03-18 05:41:19.304 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:19.304 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:41:19.304 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174652914094008. ----------
17-03-18 05:41:19.304 -07 000000610 INF: Cycle	140	Tile	11	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:19.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36722, sync = True, waitForSettling = True)
17-03-18 05:41:19.314 -07 000000610 INF: Z Motor: Moving to -0.168103 mm, started at -0.174653 mm, distance = 6.55 um
17-03-18 05:41:19.314 -07 000000610 INF: FPGA: Xmit ZDACW 36722\n [Z Motor]
17-03-18 05:41:19.314 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:41:19.324 -07 000000610 INF: FPGA: 'ZDACW 36722' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:19.324 -07 000000474 INF: FPGA: Recv ZDACR 36722
17-03-18 05:41:19.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35455
17-03-18 05:41:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.494 -07 000000474 INF: FPGA: Recv ZSGSRD 35458
17-03-18 05:41:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35460
17-03-18 05:41:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.514 -07 000000447 INF: FPGA: Recv ZSGSRD 35464
17-03-18 05:41:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.524 -07 000000611 INF: FPGA: Recv ZSGSRD 35462
17-03-18 05:41:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.534 -07 000000590 INF: FPGA: Recv ZSGSRD 35457
17-03-18 05:41:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.544 -07 000000424 INF: FPGA: Recv ZSGSRD 35461
17-03-18 05:41:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35456
17-03-18 05:41:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.564 -07 000000590 INF: FPGA: Recv ZSGSRD 35460
17-03-18 05:41:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:19.574 -07 000000424 INF: FPGA: Recv ZSGSRD 35455
17-03-18 05:41:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:19.584 -07 000000579 INF: FPGA: Recv ZPIEZORD 31204
17-03-18 05:41:19.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:19.594 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 05:41:19.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35459 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35459 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35464 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:41:19.594 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35459, posNoise = 5, negNoise = 4
17-03-18 05:41:19.594 -07 000000610 INF: Z Motor: After move to -0.168103, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:19.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:41:19.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:19.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:19.594 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:19.594 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:19.594 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:19.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:19.594 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:19.594 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:19.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:19.594 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:19.594 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:19.594 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:19.604 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:19.604 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:19.604 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:19.604 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:19.614 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:19.614 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:19.614 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:41:19.614 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:19.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36898 150\n [Camera]
17-03-18 05:41:19.814 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:20.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:20.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:20.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:20.264 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:20.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:20.264 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:20.264 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:20.264 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:20.264 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:20.264 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:41:20.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36898 828
17-03-18 05:41:20.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:20.654 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:41:20.654 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:41:20.654 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:20.654 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:41:20.654 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:41:20.654 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:20.664 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:20.664 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:41:20.664 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:20.674 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:41:20.814 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:20.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:20.814 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:20.814 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:20.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:20.814 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:20.814 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:20.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:41:20.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:20.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:41:21.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:41:21.004 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:21.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36898 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-18 05:41:21.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:21.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168119490345837. ------
17-03-18 05:41:21.014 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:21.014 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17486 mm
17-03-18 05:41:21.014 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:21.014 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:41:21.014 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:41:21.024 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:21.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:41:21.224 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:41:21.224 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:21.224 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:41:21.224 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:41:21.224 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:21.224 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:21.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:41:21.224 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:21.234 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:41:21.234 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38199, sync = True, waitForSettling = False)
17-03-18 05:41:21.234 -07 000000447 INF: Z Motor: Moving to -0.174864 mm, started at -0.168119 mm, distance = -6.74 um
17-03-18 05:41:21.234 -07 000000447 INF: FPGA: Xmit ZDACW 38199\n [Z Motor]
17-03-18 05:41:21.244 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:21.244 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:41:21.244 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:41:21.244 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 231 ms overall
17-03-18 05:41:21.244 -07 000000447 INF: FPGA: 'ZDACW 38199' command took 0 ms to send, 3 ms to get response, and 7 ms overall
17-03-18 05:41:21.244 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:21.244 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 228 ms overall
17-03-18 05:41:21.244 -07 000000501 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:21.244 -07 000000424 INF: FPGA: Recv ZDACR 38199
17-03-18 05:41:21.254 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:21.254 -07 000000447 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 05:41:21.254 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:21.254 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:21.254 -07 000000501 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:41:21.264 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:21.454 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:21.454 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 05:41:21.634 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:41:21.634 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:41:21.684 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:21.694 -07 000000611 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:41:21.694 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:21.694 -07 000000501 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:21.694 -07 000000501 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:41:21.694 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.172 mm/sec
17-03-18 05:41:21.784 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:22.644 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:22.644 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:41:22.654 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:22.654 -07 000000501 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:22.684 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:22.684 -07 000000501 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:22.684 -07 000000501 INF: Y Motor: Moved to 69.0264 after 1666 ms (table move)
17-03-18 05:41:22.684 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174864 mm (DAC = 38199)
17-03-18 05:41:22.684 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.684 -07 000000501 INF: FPGA: Recv ZSGSRD 36514
17-03-18 05:41:22.694 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:22.694 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.694 -07 000000447 INF: FPGA: Recv ZSGSRD 36510
17-03-18 05:41:22.704 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.704 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.704 -07 000000424 INF: FPGA: Recv ZSGSRD 36510
17-03-18 05:41:22.714 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.714 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.714 -07 000000501 INF: FPGA: Recv ZSGSRD 36506
17-03-18 05:41:22.724 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.724 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.724 -07 000000447 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:41:22.734 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.734 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.734 -07 000000501 INF: FPGA: Recv ZSGSRD 36508
17-03-18 05:41:22.744 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.744 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.744 -07 000000611 INF: FPGA: Recv ZSGSRD 36510
17-03-18 05:41:22.754 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.754 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.754 -07 000000447 INF: FPGA: Recv ZSGSRD 36515
17-03-18 05:41:22.764 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.764 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.764 -07 000000447 INF: FPGA: Recv ZSGSRD 36513
17-03-18 05:41:22.774 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.774 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:22.774 -07 000000447 INF: FPGA: Recv ZSGSRD 36509
17-03-18 05:41:22.784 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.784 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:22.784 -07 000000501 INF: FPGA: Recv ZPIEZORD 32607
17-03-18 05:41:22.794 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.6 V.
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36510 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36505 (-174.0 uncal um), Max = 36515 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36510, posNoise = 5, negNoise = 5
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: After move to -0.174864, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-18 05:41:22.794 -07 000000487 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:22.844 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1827 ms
17-03-18 05:41:22.844 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:22.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:22.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:22.844 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:22.844 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:22.844 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:22.854 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:22.854 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:41:22.854 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:22.854 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:22.854 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:22.864 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:22.864 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:41:22.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:22.904 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:23.204 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:23.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:23.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:23.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:41:23.244 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:23.244 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:23.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:41:23.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:41:23.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:23.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:41:23.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:41:23.344 -07 000000629 INF: Autofocus start
17-03-18 05:41:23.344 -07 000000629 INF: MeasureProfile start
17-03-18 05:41:23.344 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:23.344 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:23.354 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:23.354 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:23.354 -07 000000629 INF: MeasureProfile done
17-03-18 05:41:23.354 -07 000000629 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:23.354 -07 000000629 INF: Autofocus finished
17-03-18 05:41:23.484 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.011254,
17-03-18 05:41:23.554 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:23.554 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:23.554 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174871337306828. ----------
17-03-18 05:41:23.564 -07 000000610 INF: Cycle	140	Tile	12	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:23.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36713, sync = True, waitForSettling = True)
17-03-18 05:41:23.564 -07 000000610 INF: Z Motor: Moving to -0.168061 mm, started at -0.174871 mm, distance = 6.81 um
17-03-18 05:41:23.564 -07 000000610 INF: FPGA: Xmit ZDACW 36713\n [Z Motor]
17-03-18 05:41:23.564 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:41:23.574 -07 000000610 INF: FPGA: 'ZDACW 36713' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:23.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:23.574 -07 000000487 INF: FPGA: Recv ZDACR 36713
17-03-18 05:41:23.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.734 -07 000000629 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:41:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.744 -07 000000487 INF: FPGA: Recv ZSGSRD 35447
17-03-18 05:41:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.754 -07 000000629 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:41:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.764 -07 000000487 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:41:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.774 -07 000000487 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:41:23.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.784 -07 000000487 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:41:23.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.794 -07 000000629 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:41:23.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.804 -07 000000487 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:41:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35453
17-03-18 05:41:23.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:23.824 -07 000000487 INF: FPGA: Recv ZSGSRD 35448
17-03-18 05:41:23.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:23.834 -07 000000629 INF: FPGA: Recv ZPIEZORD 31208
17-03-18 05:41:23.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:23.844 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.4 V.
17-03-18 05:41:23.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35447 (-167.2 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:41:23.844 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 3, negNoise = 4
17-03-18 05:41:23.844 -07 000000610 INF: Z Motor: After move to -0.168061, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:23.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:41:23.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:23.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:23.844 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:23.844 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:23.844 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:23.844 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:23.844 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:23.844 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:23.844 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:23.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:23.844 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:23.844 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:23.854 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:23.854 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:23.854 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:23.854 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:23.864 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:23.864 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:23.864 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:23.864 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:23.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36890 150\n [Camera]
17-03-18 05:41:24.064 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:24.504 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:24.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:24.504 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:24.504 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:24.504 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:41:24.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:24.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:24.514 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:24.514 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:24.514 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:41:24.694 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36890 828
17-03-18 05:41:24.844 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:24.894 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:41:24.894 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:41:24.894 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:24.894 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:41:24.894 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:41:24.894 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:24.894 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:24.894 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:41:24.904 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:24.904 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:41:25.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:25.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:25.064 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:25.064 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:25.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:41:25.064 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:25.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:25.064 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:25.064 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:25.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:41:25.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:41:25.254 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:25.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36890 150' command took 2 ms to send, 1384 ms to get response, and 1391 ms overall
17-03-18 05:41:25.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:25.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168068096648703. ------
17-03-18 05:41:25.254 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:25.254 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17442 mm
17-03-18 05:41:25.254 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:25.374 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:25.374 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 116 ms to get response, and 118 ms overall
17-03-18 05:41:25.374 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:25.374 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:41:25.374 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:41:25.374 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38101, sync = True, waitForSettling = False)
17-03-18 05:41:25.374 -07 000000618 INF: Z Motor: Moving to -0.174415 mm, started at -0.168068 mm, distance = -6.35 um
17-03-18 05:41:25.384 -07 000000618 INF: FPGA: Xmit ZDACW 38101\n [Z Motor]
17-03-18 05:41:25.384 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:41:25.394 -07 000000618 INF: FPGA: 'ZDACW 38101' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:25.394 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:25.394 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:41:25.404 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:41:25.404 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:25.404 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:25.404 -07 000000382 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:41:25.404 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:25.404 -07 000000590 INF: FPGA: Recv ZDACR 38101
17-03-18 05:41:25.414 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:25.414 -07 000000618 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 05:41:25.414 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:25.454 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:41:25.454 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:41:25.454 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:25.464 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:41:25.464 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:41:25.464 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:25.464 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:25.464 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:41:25.464 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:41:25.474 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:41:25.584 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:25.584 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 05:41:25.784 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:41:25.784 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:41:25.834 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:25.844 -07 000000611 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:41:25.844 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:41:25.844 -07 000000382 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:25.844 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:41:25.844 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-18 05:41:26.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:26.794 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:26.794 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:41:26.804 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:26.804 -07 000000382 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:26.834 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:26.834 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:26.834 -07 000000382 INF: Y Motor: Moved to 69.8623 after 1455 ms (table move)
17-03-18 05:41:26.834 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174415 mm (DAC = 38101)
17-03-18 05:41:26.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.834 -07 000000618 INF: FPGA: Recv ZSGSRD 36444
17-03-18 05:41:26.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:41:26.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.844 -07 000000447 INF: FPGA: Recv ZSGSRD 36444
17-03-18 05:41:26.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.854 -07 000000501 INF: FPGA: Recv ZSGSRD 36441
17-03-18 05:41:26.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.864 -07 000000618 INF: FPGA: Recv ZSGSRD 36439
17-03-18 05:41:26.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.874 -07 000000618 INF: FPGA: Recv ZSGSRD 36434
17-03-18 05:41:26.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.884 -07 000000447 INF: FPGA: Recv ZSGSRD 36443
17-03-18 05:41:26.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.894 -07 000000618 INF: FPGA: Recv ZSGSRD 36435
17-03-18 05:41:26.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.904 -07 000000447 INF: FPGA: Recv ZSGSRD 36442
17-03-18 05:41:26.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.914 -07 000000382 INF: FPGA: Recv ZSGSRD 36455
17-03-18 05:41:26.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:26.924 -07 000000447 INF: FPGA: Recv ZSGSRD 36440
17-03-18 05:41:26.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.934 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:26.934 -07 000000618 INF: FPGA: Recv ZPIEZORD 32554
17-03-18 05:41:26.944 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.6 V.
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36442 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36434 (-173.5 uncal um), Max = 36455 (-173.6 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36442, posNoise = 13, negNoise = 8
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: After move to -0.174415, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:41:26.944 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:26.994 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 05:41:26.994 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:26.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:26.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:26.994 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:26.994 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:26.994 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:26.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:26.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:26.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:27.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:27.004 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:27.004 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:27.004 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:41:27.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:27.054 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:27.354 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:27.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:27.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:27.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:27.394 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:27.394 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:27.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 05:41:27.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:41:27.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:27.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:27.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:41:27.494 -07 000000424 INF: Autofocus start
17-03-18 05:41:27.494 -07 000000424 INF: MeasureProfile start
17-03-18 05:41:27.494 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:27.494 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:27.504 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:27.504 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:27.504 -07 000000424 INF: MeasureProfile done
17-03-18 05:41:27.504 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:41:27.504 -07 000000424 INF: Autofocus finished
17-03-18 05:41:27.704 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:27.704 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:27.704 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174434490881188. ----------
17-03-18 05:41:27.704 -07 000000610 INF: Cycle	140	Tile	13	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:27.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36598, sync = True, waitForSettling = True)
17-03-18 05:41:27.714 -07 000000610 INF: Z Motor: Moving to -0.167535 mm, started at -0.174434 mm, distance = 6.90 um
17-03-18 05:41:27.714 -07 000000610 INF: FPGA: Xmit ZDACW 36598\n [Z Motor]
17-03-18 05:41:27.714 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:41:27.724 -07 000000610 INF: FPGA: 'ZDACW 36598' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:27.724 -07 000000501 INF: FPGA: Recv ZDACR 36598
17-03-18 05:41:27.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.884 -07 000000382 INF: FPGA: Recv ZSGSRD 35371
17-03-18 05:41:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.894 -07 000000618 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:41:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.904 -07 000000501 INF: FPGA: Recv ZSGSRD 35365
17-03-18 05:41:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.914 -07 000000618 INF: FPGA: Recv ZSGSRD 35372
17-03-18 05:41:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35371
17-03-18 05:41:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.934 -07 000000424 INF: FPGA: Recv ZSGSRD 35366
17-03-18 05:41:27.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.944 -07 000000447 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:41:27.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:27.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.954 -07 000000501 INF: FPGA: Recv ZSGSRD 35364
17-03-18 05:41:27.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.964 -07 000000618 INF: FPGA: Recv ZSGSRD 35369
17-03-18 05:41:27.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:27.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35364
17-03-18 05:41:27.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:27.984 -07 000000447 INF: FPGA: Recv ZPIEZORD 31102
17-03-18 05:41:27.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:27.994 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.4 V.
17-03-18 05:41:27.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35368 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35368 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35364 (-166.6 uncal um), Max = 35372 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:41:27.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35368, posNoise = 4, negNoise = 4
17-03-18 05:41:27.994 -07 000000610 INF: Z Motor: After move to -0.167535, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:27.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:41:27.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:27.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:27.994 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:27.994 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:27.994 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:27.994 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:27.994 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:27.994 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:27.994 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:27.994 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:27.994 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:27.994 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:27.994 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:27.994 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:28.004 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:28.004 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:28.004 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:28.004 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:28.014 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:41:28.014 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:28.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36775 150\n [Camera]
17-03-18 05:41:28.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:28.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:28.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:28.654 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:28.664 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:28.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:28.664 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:28.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:28.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:28.664 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:28.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:28.844 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.983999,
17-03-18 05:41:28.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36775 828
17-03-18 05:41:28.994 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:29.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:41:29.054 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:41:29.054 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:29.064 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:41:29.064 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:41:29.064 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:29.064 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:29.064 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:41:29.064 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:29.074 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:41:29.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:29.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:29.214 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:29.214 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:29.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:29.214 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:29.224 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:29.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:41:29.224 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:29.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:41:29.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:29.404 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:29.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36775 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-18 05:41:29.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:29.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167534887040937. ------
17-03-18 05:41:29.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:29.534 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17400 mm
17-03-18 05:41:29.534 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:29.534 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38010, sync = True, waitForSettling = False)
17-03-18 05:41:29.534 -07 000000501 INF: Z Motor: Moving to -0.173999 mm, started at -0.167535 mm, distance = -6.46 um
17-03-18 05:41:29.534 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:41:29.534 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:41:29.534 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:29.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:29.544 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:29.544 -07 000000590 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:41:29.554 -07 000000501 INF: FPGA: Xmit ZDACW 38010\n [Z Motor]
17-03-18 05:41:29.554 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:41:29.554 -07 000000591 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:29.554 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:41:29.554 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:29.554 -07 000000591 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:41:29.564 -07 000000501 INF: FPGA: 'ZDACW 38010' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:41:29.564 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:29.574 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:29.584 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:29.584 -07 000000590 INF: FPGA: Recv ZDACR 38010
17-03-18 05:41:29.594 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:29.594 -07 000000501 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:41:29.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:41:29.614 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:41:29.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:29.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:29.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:41:29.614 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:41:29.614 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:29.624 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:41:29.624 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:29.624 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:41:29.764 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:29.764 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:41:29.944 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:41:29.944 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:41:29.994 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:30.004 -07 000000424 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:41:30.004 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:30.004 -07 000000591 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:30.004 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:41:30.004 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-18 05:41:30.954 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:30.954 -07 000000501 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:41:30.964 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:30.964 -07 000000591 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:30.994 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:30.994 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:41:30.994 -07 000000591 INF: Y Motor: Moved to 70.6880 after 1458 ms (table move)
17-03-18 05:41:30.994 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173999 mm (DAC = 38010)
17-03-18 05:41:30.994 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:30.994 -07 000000625 INF: FPGA: Recv ZSGSRD 36379
17-03-18 05:41:31.004 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:31.004 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.004 -07 000000012 INF: FPGA: Recv ZSGSRD 36377
17-03-18 05:41:31.014 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:31.014 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.014 -07 000000012 INF: FPGA: Recv ZSGSRD 36370
17-03-18 05:41:31.024 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.024 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.024 -07 000000424 INF: FPGA: Recv ZSGSRD 36369
17-03-18 05:41:31.034 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.034 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.034 -07 000000424 INF: FPGA: Recv ZSGSRD 36374
17-03-18 05:41:31.044 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.044 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.044 -07 000000424 INF: FPGA: Recv ZSGSRD 36375
17-03-18 05:41:31.054 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.054 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.054 -07 000000424 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:41:31.064 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.074 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.074 -07 000000382 INF: FPGA: Recv ZSGSRD 36383
17-03-18 05:41:31.084 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:31.084 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.084 -07 000000382 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:41:31.094 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.094 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:31.094 -07 000000382 INF: FPGA: Recv ZSGSRD 36378
17-03-18 05:41:31.104 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.104 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:31.104 -07 000000382 INF: FPGA: Recv ZPIEZORD 32495
17-03-18 05:41:31.114 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.800 V. Piezo Error = -8.6 V.
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36375 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36374 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36369 (-173.1 uncal um), Max = 36383 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36375, posNoise = 8, negNoise = 6
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: After move to -0.173999, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: Settle wait time = 1461 ms, measure time = 115 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:41:31.114 -07 000000606 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:31.154 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:41:31.154 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:31.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:31.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:31.154 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:31.154 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:31.154 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:31.154 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:31.154 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:31.154 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:31.164 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:31.164 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:31.164 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:31.164 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:41:31.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:31.214 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:31.514 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:31.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:31.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:31.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:31.554 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:31.554 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:31.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:41:31.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:41:31.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:31.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:41:31.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 05:41:31.754 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:31.754 -07 000000591 INF: Autofocus start
17-03-18 05:41:31.754 -07 000000591 INF: MeasureProfile start
17-03-18 05:41:31.754 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:31.764 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:31.764 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:31.764 -07 000000591 INF: MeasureProfile done
17-03-18 05:41:31.764 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:31.764 -07 000000591 INF: Autofocus finished
17-03-18 05:41:31.784 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:31.964 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:31.964 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:31.964 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.17400406866769. ----------
17-03-18 05:41:31.964 -07 000000610 INF: Cycle	140	Tile	14	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:31.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36525, sync = True, waitForSettling = True)
17-03-18 05:41:31.974 -07 000000610 INF: Z Motor: Moving to -0.167201 mm, started at -0.174004 mm, distance = 6.80 um
17-03-18 05:41:31.974 -07 000000610 INF: FPGA: Xmit ZDACW 36525\n [Z Motor]
17-03-18 05:41:31.974 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:41:31.984 -07 000000610 INF: FPGA: 'ZDACW 36525' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:31.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:31.984 -07 000000382 INF: FPGA: Recv ZDACR 36525
17-03-18 05:41:31.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:31.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:32.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.144 -07 000000382 INF: FPGA: Recv ZSGSRD 35316
17-03-18 05:41:32.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:32.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.154 -07 000000382 INF: FPGA: Recv ZSGSRD 35318
17-03-18 05:41:32.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.164 -07 000000382 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:41:32.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.174 -07 000000606 INF: FPGA: Recv ZSGSRD 35312
17-03-18 05:41:32.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.184 -07 000000590 INF: FPGA: Recv ZSGSRD 35318
17-03-18 05:41:32.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35318
17-03-18 05:41:32.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:41:32.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.214 -07 000000382 INF: FPGA: Recv ZSGSRD 35316
17-03-18 05:41:32.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.224 -07 000000382 INF: FPGA: Recv ZSGSRD 35311
17-03-18 05:41:32.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:32.234 -07 000000487 INF: FPGA: Recv ZSGSRD 35317
17-03-18 05:41:32.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:32.244 -07 000000487 INF: FPGA: Recv ZPIEZORD 31067
17-03-18 05:41:32.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:32.254 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.4 V.
17-03-18 05:41:32.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35317 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35318 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35311 (-166.3 uncal um), Max = 35323 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:32.254 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35317, posNoise = 6, negNoise = 6
17-03-18 05:41:32.254 -07 000000610 INF: Z Motor: After move to -0.167201, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:32.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:41:32.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:32.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:32.254 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:32.254 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:32.254 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:32.254 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:32.254 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:32.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:32.254 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:32.254 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:32.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:32.254 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:32.264 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:32.264 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:32.264 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:32.264 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:32.274 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:32.274 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:32.274 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:32.274 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:32.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36702 150\n [Camera]
17-03-18 05:41:32.474 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:32.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:32.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:32.914 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:32.924 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:32.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:32.924 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:32.924 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:32.924 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:32.924 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:32.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:33.114 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36702 828
17-03-18 05:41:33.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:33.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:41:33.314 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:41:33.314 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:33.324 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:33.324 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:41:33.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:41:33.324 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:41:33.324 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:33.324 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:41:33.334 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:41:33.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:33.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:33.474 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:33.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:33.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:33.474 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:33.474 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:33.474 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:41:33.484 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:33.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:41:33.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:33.664 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:33.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36702 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-18 05:41:33.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:33.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167207252221707. ------
17-03-18 05:41:33.674 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:33.674 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17393 mm
17-03-18 05:41:33.674 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:33.674 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:33.674 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:41:33.674 -07 000000606 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:41:33.674 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37995, sync = True, waitForSettling = False)
17-03-18 05:41:33.674 -07 000000590 INF: Z Motor: Moving to -0.173930 mm, started at -0.167207 mm, distance = -6.72 um
17-03-18 05:41:33.684 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:33.684 -07 000000590 INF: FPGA: Xmit ZDACW 37995\n [Z Motor]
17-03-18 05:41:33.684 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:41:33.694 -07 000000590 INF: FPGA: 'ZDACW 37995' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:41:33.694 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:33.694 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:41:33.704 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:33.704 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:41:33.704 -07 000000606 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:33.704 -07 000000606 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:33.704 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:41:33.714 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:33.714 -07 000000629 INF: FPGA: Recv ZDACR 37995
17-03-18 05:41:33.724 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:33.724 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:33.724 -07 000000590 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:41:33.854 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:41:33.854 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:41:33.854 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:33.864 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:33.864 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:41:33.864 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:41:33.864 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:41:33.864 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:33.874 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:33.874 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:41:33.904 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:33.904 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:41:34.094 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:41:34.094 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:41:34.144 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:34.154 -07 000000591 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:41:34.154 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:34.154 -07 000000606 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:34.154 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:41:34.154 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:41:34.204 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.975845,
17-03-18 05:41:35.104 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:35.104 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:41:35.114 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:35.114 -07 000000606 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:35.144 -07 000000606 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:35.144 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:35.144 -07 000000606 INF: Y Motor: Moved to 71.5186 after 1469 ms (table move)
17-03-18 05:41:35.144 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173930 mm (DAC = 37995)
17-03-18 05:41:35.144 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:41:35.154 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:41:35.154 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.154 -07 000000437 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:41:35.164 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.164 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.164 -07 000000629 INF: FPGA: Recv ZSGSRD 36363
17-03-18 05:41:35.174 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.174 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.174 -07 000000629 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:41:35.184 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.184 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.184 -07 000000629 INF: FPGA: Recv ZSGSRD 36363
17-03-18 05:41:35.194 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.194 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.194 -07 000000629 INF: FPGA: Recv ZSGSRD 36369
17-03-18 05:41:35.204 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.204 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.204 -07 000000629 INF: FPGA: Recv ZSGSRD 36359
17-03-18 05:41:35.214 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.214 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.214 -07 000000629 INF: FPGA: Recv ZSGSRD 36359
17-03-18 05:41:35.224 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.224 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.224 -07 000000629 INF: FPGA: Recv ZSGSRD 36375
17-03-18 05:41:35.234 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.234 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:35.234 -07 000000629 INF: FPGA: Recv ZSGSRD 36357
17-03-18 05:41:35.244 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.244 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:35.244 -07 000000629 INF: FPGA: Recv ZPIEZORD 32457
17-03-18 05:41:35.254 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.6 V.
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36366 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36364 (-173.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36357 (-173.0 uncal um), Max = 36375 (-173.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36366, posNoise = 9, negNoise = 9
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: After move to -0.173930, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: Settle wait time = 1470 ms, measure time = 103 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:41:35.254 -07 000000487 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:35.304 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:41:35.304 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:35.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:35.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:35.304 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:35.304 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:35.304 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:35.304 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:35.314 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:35.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:35.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:35.314 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:35.324 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:41:35.324 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:41:35.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:35.374 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:35.674 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:35.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:35.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:35.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:41:35.714 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:35.714 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:35.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 386 ms to get response, and 388 ms overall
17-03-18 05:41:35.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:41:35.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:35.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:35.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:41:35.814 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:35.814 -07 000000611 INF: Autofocus start
17-03-18 05:41:35.814 -07 000000611 INF: MeasureProfile start
17-03-18 05:41:35.814 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:35.824 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:35.824 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:35.824 -07 000000611 INF: MeasureProfile done
17-03-18 05:41:35.824 -07 000000611 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:41:35.824 -07 000000611 INF: Autofocus finished
17-03-18 05:41:36.024 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:36.024 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:36.024 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173946250758414. ----------
17-03-18 05:41:36.024 -07 000000610 INF: Cycle	140	Tile	15	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:36.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36492, sync = True, waitForSettling = True)
17-03-18 05:41:36.034 -07 000000610 INF: Z Motor: Moving to -0.167050 mm, started at -0.173946 mm, distance = 6.90 um
17-03-18 05:41:36.034 -07 000000610 INF: FPGA: Xmit ZDACW 36492\n [Z Motor]
17-03-18 05:41:36.034 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:41:36.044 -07 000000610 INF: FPGA: 'ZDACW 36492' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:36.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:36.044 -07 000000611 INF: FPGA: Recv ZDACR 36492
17-03-18 05:41:36.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:41:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.214 -07 000000437 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:41:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.224 -07 000000606 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:41:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35291
17-03-18 05:41:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.244 -07 000000611 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:41:36.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:41:36.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.264 -07 000000585 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:41:36.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.274 -07 000000569 INF: FPGA: Recv ZSGSRD 35295
17-03-18 05:41:36.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.284 -07 000000585 INF: FPGA: Recv ZSGSRD 35299
17-03-18 05:41:36.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:36.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:41:36.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:36.304 -07 000000569 INF: FPGA: Recv ZPIEZORD 31036
17-03-18 05:41:36.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:36.314 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.4 V.
17-03-18 05:41:36.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35295 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35294 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35291 (-166.2 uncal um), Max = 35299 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:41:36.314 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35295, posNoise = 4, negNoise = 4
17-03-18 05:41:36.314 -07 000000610 INF: Z Motor: After move to -0.167050, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:36.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 05:41:36.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:36.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:36.324 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:36.324 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:36.324 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:36.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:36.324 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:36.324 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:36.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:36.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:36.324 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:36.324 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:36.324 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:36.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:36.324 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:36.324 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:36.334 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:41:36.334 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:41:36.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:41:36.344 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:41:36.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36669 150\n [Camera]
17-03-18 05:41:36.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:36.784 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:36.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:36.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:36.984 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:36.984 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:36.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:41:36.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:36.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:36.984 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:36.984 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:36.984 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:41:37.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36669 828
17-03-18 05:41:37.324 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:37.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:41:37.364 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:41:37.364 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:37.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:41:37.364 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:41:37.364 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:37.364 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:37.364 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:41:37.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:37.374 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:41:37.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:37.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:37.544 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:37.544 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:37.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:41:37.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:37.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:37.544 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:37.544 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:37.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:41:37.734 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:37.734 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:37.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36669 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-18 05:41:37.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:37.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167065919554588. ------
17-03-18 05:41:37.854 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17348 mm
17-03-18 05:41:37.854 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:37.854 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:37.854 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:41:37.854 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:41:37.854 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37896, sync = True, waitForSettling = False)
17-03-18 05:41:37.854 -07 000000585 INF: Z Motor: Moving to -0.173477 mm, started at -0.167066 mm, distance = -6.41 um
17-03-18 05:41:37.854 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:37.864 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:37.864 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:37.864 -07 000000447 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:41:37.874 -07 000000585 INF: FPGA: Xmit ZDACW 37896\n [Z Motor]
17-03-18 05:41:37.874 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:41:37.874 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:37.874 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:37.874 -07 000000591 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:41:37.874 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:41:37.884 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:37.884 -07 000000585 INF: FPGA: 'ZDACW 37896' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:41:37.894 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:37.904 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:37.904 -07 000000501 INF: FPGA: Recv ZDACR 37896
17-03-18 05:41:37.914 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:37.914 -07 000000585 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:41:37.934 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:41:37.934 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:41:37.934 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:37.934 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:41:37.934 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:41:37.934 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:37.944 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:37.944 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:41:37.944 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:41:37.944 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:41:38.084 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:38.084 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:41:38.264 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:41:38.264 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:41:38.314 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:38.324 -07 000000569 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:41:38.324 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:41:38.324 -07 000000591 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:38.324 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:41:38.324 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:41:39.274 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:39.274 -07 000000606 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:41:39.284 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.284 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:39.314 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:39.314 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:41:39.314 -07 000000591 INF: Y Motor: Moved to 72.3491 after 1457 ms (table move)
17-03-18 05:41:39.314 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173477 mm (DAC = 37896)
17-03-18 05:41:39.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.314 -07 000000591 INF: FPGA: Recv ZSGSRD 36299
17-03-18 05:41:39.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:39.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.324 -07 000000591 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:41:39.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.334 -07 000000591 INF: FPGA: Recv ZSGSRD 36290
17-03-18 05:41:39.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36290
17-03-18 05:41:39.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.354 -07 000000424 INF: FPGA: Recv ZSGSRD 36290
17-03-18 05:41:39.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:41:39.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36293
17-03-18 05:41:39.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36298
17-03-18 05:41:39.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.394 -07 000000591 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:41:39.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:39.404 -07 000000606 INF: FPGA: Recv ZSGSRD 36292
17-03-18 05:41:39.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.414 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:39.414 -07 000000606 INF: FPGA: Recv ZPIEZORD 32393
17-03-18 05:41:39.424 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.6 V.
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36294 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36294 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36299 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36294, posNoise = 5, negNoise = 4
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: After move to -0.173477, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:41:39.424 -07 000000579 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:39.474 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:41:39.474 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:39.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:39.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:39.474 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:39.474 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:39.474 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:39.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:39.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:39.474 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:39.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:39.484 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:39.484 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:39.484 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:41:39.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:39.534 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:39.564 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.993549,
17-03-18 05:41:39.834 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:39.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:39.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:39.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:39.874 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:39.874 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:39.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:41:39.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:41:39.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:39.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:39.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:41:39.974 -07 000000591 INF: Autofocus start
17-03-18 05:41:39.974 -07 000000591 INF: MeasureProfile start
17-03-18 05:41:39.974 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:39.974 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:39.984 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:39.984 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:39.984 -07 000000591 INF: MeasureProfile done
17-03-18 05:41:39.984 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:39.984 -07 000000591 INF: Autofocus finished
17-03-18 05:41:40.184 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:40.184 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:40.184 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173483707484207. ----------
17-03-18 05:41:40.194 -07 000000610 INF: Cycle	140	Tile	16	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:40.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36411, sync = True, waitForSettling = True)
17-03-18 05:41:40.194 -07 000000610 INF: Z Motor: Moving to -0.166679 mm, started at -0.173484 mm, distance = 6.80 um
17-03-18 05:41:40.194 -07 000000610 INF: FPGA: Xmit ZDACW 36411\n [Z Motor]
17-03-18 05:41:40.194 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:41:40.204 -07 000000610 INF: FPGA: 'ZDACW 36411' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:40.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:40.204 -07 000000444 INF: FPGA: Recv ZDACR 36411
17-03-18 05:41:40.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:40.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.364 -07 000000444 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:41:40.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:40.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.374 -07 000000444 INF: FPGA: Recv ZSGSRD 35236
17-03-18 05:41:40.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35233
17-03-18 05:41:40.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.394 -07 000000444 INF: FPGA: Recv ZSGSRD 35231
17-03-18 05:41:40.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.404 -07 000000444 INF: FPGA: Recv ZSGSRD 35243
17-03-18 05:41:40.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35236
17-03-18 05:41:40.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.424 -07 000000444 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:41:40.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35232
17-03-18 05:41:40.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.444 -07 000000444 INF: FPGA: Recv ZSGSRD 35234
17-03-18 05:41:40.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:40.454 -07 000000444 INF: FPGA: Recv ZSGSRD 35240
17-03-18 05:41:40.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:40.464 -07 000000444 INF: FPGA: Recv ZPIEZORD 30950
17-03-18 05:41:40.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:40.474 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.4 V.
17-03-18 05:41:40.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35231 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:40.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 7, negNoise = 5
17-03-18 05:41:40.474 -07 000000610 INF: Z Motor: After move to -0.166679, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:40.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:41:40.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:40.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:40.474 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:40.474 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:40.474 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:40.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:40.474 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:40.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:40.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:40.474 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:40.474 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:41:40.474 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:40.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:40.484 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:40.484 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:41:40.484 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:40.494 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:40.494 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:40.494 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:41:40.494 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:40.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36587 150\n [Camera]
17-03-18 05:41:40.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:41.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 638
17-03-18 05:41:41.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 638
17-03-18 05:41:41.144 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:41.144 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 638
17-03-18 05:41:41.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 638
17-03-18 05:41:41.144 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:41.144 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:41.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:41.144 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:41.144 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:41.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36587 828
17-03-18 05:41:41.474 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:41.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:41:41.544 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:41:41.544 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:41.544 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:41:41.544 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:41:41.544 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:41.544 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:41.544 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:41:41.544 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:41.554 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:41:41.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:41.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:41.694 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:41.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:41.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:41.694 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:41.704 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:41.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:41:41.704 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:41.704 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:41:41.894 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:41.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:41.904 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:41.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36587 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-18 05:41:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:41.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:41.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166686891038224. ------
17-03-18 05:41:41.904 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:41.904 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17320 mm
17-03-18 05:41:41.904 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:41.904 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:41:41.904 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:41:41.914 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:42.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:41:42.094 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:41:42.094 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:42.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:41:42.094 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:41:42.094 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:42.094 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:42.104 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:42.104 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:41:42.104 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:41:42.114 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37836, sync = True, waitForSettling = False)
17-03-18 05:41:42.114 -07 000000606 INF: Z Motor: Moving to -0.173202 mm, started at -0.166687 mm, distance = -6.52 um
17-03-18 05:41:42.114 -07 000000606 INF: FPGA: Xmit ZDACW 37836\n [Z Motor]
17-03-18 05:41:42.114 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:42.114 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:41:42.114 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 212 ms overall
17-03-18 05:41:42.114 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 197 ms to get response, and 209 ms overall
17-03-18 05:41:42.114 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:42.114 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:42.114 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:41:42.114 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:41:42.124 -07 000000606 INF: FPGA: 'ZDACW 37836' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:41:42.124 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:42.134 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:42.144 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:42.144 -07 000000569 INF: FPGA: Recv ZDACR 37836
17-03-18 05:41:42.154 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:42.154 -07 000000606 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:41:42.324 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:42.324 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 05:41:42.504 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:41:42.504 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 05:41:42.554 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:42.564 -07 000000606 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:41:42.564 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:41:42.564 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:42.564 -07 000000501 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:41:42.564 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.163 mm/sec
17-03-18 05:41:43.514 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:43.514 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:41:43.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.524 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:43.554 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:43.554 -07 000000501 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:43.554 -07 000000501 INF: Y Motor: Moved to 73.1753 after 1643 ms (table move)
17-03-18 05:41:43.554 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173202 mm (DAC = 37836)
17-03-18 05:41:43.554 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.554 -07 000000455 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:41:43.564 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:41:43.564 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.564 -07 000000618 INF: FPGA: Recv ZSGSRD 36256
17-03-18 05:41:43.574 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.574 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.574 -07 000000625 INF: FPGA: Recv ZSGSRD 36255
17-03-18 05:41:43.584 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.584 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36255
17-03-18 05:41:43.594 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.594 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.594 -07 000000447 INF: FPGA: Recv ZSGSRD 36254
17-03-18 05:41:43.604 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.604 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.604 -07 000000625 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:41:43.614 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.614 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36247
17-03-18 05:41:43.624 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.624 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:41:43.634 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.634 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.634 -07 000000569 INF: FPGA: Recv ZSGSRD 36243
17-03-18 05:41:43.644 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.644 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:43.644 -07 000000447 INF: FPGA: Recv ZSGSRD 36252
17-03-18 05:41:43.654 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.654 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:43.654 -07 000000569 INF: FPGA: Recv ZPIEZORD 32332
17-03-18 05:41:43.664 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.7 V.
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36251 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36243 (-172.3 uncal um), Max = 36256 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36251, posNoise = 5, negNoise = 8
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: After move to -0.173202, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-18 05:41:43.664 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:43.714 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-18 05:41:43.714 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:43.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:43.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:43.714 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:43.714 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:43.714 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:43.714 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:43.724 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:43.724 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:43.724 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:43.724 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:43.734 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:43.734 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:41:43.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:43.774 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:44.074 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:44.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:44.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:44.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:44.114 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:44.114 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:44.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 05:41:44.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:41:44.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:44.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:44.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:41:44.214 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:44.214 -07 000000618 INF: Autofocus start
17-03-18 05:41:44.214 -07 000000618 INF: MeasureProfile start
17-03-18 05:41:44.214 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:44.224 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:44.224 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:44.224 -07 000000618 INF: MeasureProfile done
17-03-18 05:41:44.224 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:41:44.224 -07 000000618 INF: Autofocus finished
17-03-18 05:41:44.424 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:44.424 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:44.424 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173207466362111. ----------
17-03-18 05:41:44.424 -07 000000610 INF: Cycle	140	Tile	17	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:44.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36333, sync = True, waitForSettling = True)
17-03-18 05:41:44.434 -07 000000610 INF: Z Motor: Moving to -0.166322 mm, started at -0.173207 mm, distance = 6.89 um
17-03-18 05:41:44.434 -07 000000610 INF: FPGA: Xmit ZDACW 36333\n [Z Motor]
17-03-18 05:41:44.434 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:41:44.444 -07 000000610 INF: FPGA: 'ZDACW 36333' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:41:44.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:44.444 -07 000000447 INF: FPGA: Recv ZDACR 36333
17-03-18 05:41:44.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.604 -07 000000625 INF: FPGA: Recv ZSGSRD 35187
17-03-18 05:41:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.614 -07 000000606 INF: FPGA: Recv ZSGSRD 35183
17-03-18 05:41:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.634 -07 000000501 INF: FPGA: Recv ZSGSRD 35177
17-03-18 05:41:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:44.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35180
17-03-18 05:41:44.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.654 -07 000000625 INF: FPGA: Recv ZSGSRD 35186
17-03-18 05:41:44.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.664 -07 000000455 INF: FPGA: Recv ZSGSRD 35173
17-03-18 05:41:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.674 -07 000000569 INF: FPGA: Recv ZSGSRD 35181
17-03-18 05:41:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35185
17-03-18 05:41:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.694 -07 000000501 INF: FPGA: Recv ZSGSRD 35178
17-03-18 05:41:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:44.704 -07 000000629 INF: FPGA: Recv ZSGSRD 35183
17-03-18 05:41:44.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:44.714 -07 000000625 INF: FPGA: Recv ZPIEZORD 30883
17-03-18 05:41:44.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:44.724 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.5 V.
17-03-18 05:41:44.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35181 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35182 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35173 (-165.4 uncal um), Max = 35187 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:41:44.724 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35181, posNoise = 6, negNoise = 8
17-03-18 05:41:44.724 -07 000000610 INF: Z Motor: After move to -0.166322, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:44.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:41:44.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:44.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:44.724 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:44.724 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:44.724 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:44.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:44.724 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:44.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:44.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:44.724 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:44.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:44.724 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:44.734 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:44.734 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:44.734 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:41:44.734 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:44.744 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:44.744 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:41:44.744 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:41:44.744 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:44.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36509 150\n [Camera]
17-03-18 05:41:44.944 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.981281,
17-03-18 05:41:44.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:45.384 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:45.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:45.384 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:45.394 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:45.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:45.394 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:45.394 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:45.394 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:45.394 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:45.394 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:45.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36509 828
17-03-18 05:41:45.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:45.784 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:41:45.784 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:41:45.784 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:45.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:41:45.784 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:41:45.784 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:45.784 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:45.784 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:41:45.794 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:45.794 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:41:45.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:41:45.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:41:45.944 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:45.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:41:45.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:41:45.944 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:45.944 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:45.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:41:45.944 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:45.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:41:46.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:46.134 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:46.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36509 150' command took 2 ms to send, 1387 ms to get response, and 1393 ms overall
17-03-18 05:41:46.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:46.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166333559370427. ------
17-03-18 05:41:46.144 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:46.144 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17212 mm
17-03-18 05:41:46.144 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:46.144 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:41:46.144 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37600, sync = True, waitForSettling = False)
17-03-18 05:41:46.144 -07 000000606 INF: Z Motor: Moving to -0.172122 mm, started at -0.166334 mm, distance = -5.79 um
17-03-18 05:41:46.144 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:41:46.144 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:46.154 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:46.154 -07 000000606 INF: FPGA: Xmit ZDACW 37600\n [Z Motor]
17-03-18 05:41:46.154 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:41:46.164 -07 000000606 INF: FPGA: 'ZDACW 37600' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:41:46.164 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:46.174 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:46.174 -07 000000590 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:41:46.184 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:46.184 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:41:46.184 -07 000000455 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:46.184 -07 000000618 INF: FPGA: Recv ZDACR 37600
17-03-18 05:41:46.184 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:46.184 -07 000000455 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:41:46.194 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:41:46.194 -07 000000606 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:41:46.194 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:46.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:41:46.334 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:41:46.334 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:46.334 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:46.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:41:46.334 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:41:46.334 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:46.344 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:41:46.344 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:46.344 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:41:46.364 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:46.364 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:41:46.564 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:41:46.564 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:41:46.604 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:46.614 -07 000000590 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:41:46.624 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:46.624 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:46.624 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:41:46.624 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.207 mm/sec
17-03-18 05:41:46.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:47.574 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:47.574 -07 000000012 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:41:47.584 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.584 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:47.604 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:47.604 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:47.604 -07 000000455 INF: Y Motor: Moved to 74.0073 after 1459 ms (table move)
17-03-18 05:41:47.614 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172122 mm (DAC = 37600)
17-03-18 05:41:47.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.624 -07 000000455 INF: FPGA: Recv ZSGSRD 36081
17-03-18 05:41:47.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:47.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.634 -07 000000012 INF: FPGA: Recv ZSGSRD 36079
17-03-18 05:41:47.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36076
17-03-18 05:41:47.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.654 -07 000000501 INF: FPGA: Recv ZSGSRD 36084
17-03-18 05:41:47.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.664 -07 000000590 INF: FPGA: Recv ZSGSRD 36082
17-03-18 05:41:47.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.674 -07 000000501 INF: FPGA: Recv ZSGSRD 36088
17-03-18 05:41:47.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.684 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.684 -07 000000455 INF: FPGA: Recv ZSGSRD 36084
17-03-18 05:41:47.694 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.694 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.694 -07 000000501 INF: FPGA: Recv ZSGSRD 36081
17-03-18 05:41:47.704 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.704 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.704 -07 000000590 INF: FPGA: Recv ZSGSRD 36084
17-03-18 05:41:47.714 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.714 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:47.714 -07 000000455 INF: FPGA: Recv ZSGSRD 36079
17-03-18 05:41:47.724 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.724 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:47.724 -07 000000012 INF: FPGA: Recv ZPIEZORD 32106
17-03-18 05:41:47.734 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.8 V.
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36082 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36082 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36076 (-171.2 uncal um), Max = 36088 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36082, posNoise = 6, negNoise = 6
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: After move to -0.172122, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: Settle wait time = 1462 ms, measure time = 120 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:41:47.734 -07 000000569 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:47.764 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:41:47.764 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:47.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:47.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:47.764 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:47.764 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:47.764 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:47.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:47.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:47.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:47.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:47.774 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:47.784 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:41:47.784 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:41:47.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:47.824 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:48.124 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:48.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:48.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:48.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:41:48.164 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:48.164 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:48.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:41:48.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:41:48.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:48.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:41:48.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:41:48.264 -07 000000501 INF: Autofocus start
17-03-18 05:41:48.264 -07 000000501 INF: MeasureProfile start
17-03-18 05:41:48.264 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:48.264 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:48.274 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:41:48.274 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:48.274 -07 000000501 INF: MeasureProfile done
17-03-18 05:41:48.274 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:48.274 -07 000000501 INF: Autofocus finished
17-03-18 05:41:48.474 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:48.474 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:48.474 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172121774510154. ----------
17-03-18 05:41:48.474 -07 000000610 INF: Cycle	140	Tile	18	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:48.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36115, sync = True, waitForSettling = True)
17-03-18 05:41:48.484 -07 000000610 INF: Z Motor: Moving to -0.165324 mm, started at -0.172122 mm, distance = 6.80 um
17-03-18 05:41:48.484 -07 000000610 INF: FPGA: Xmit ZDACW 36115\n [Z Motor]
17-03-18 05:41:48.484 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:41:48.494 -07 000000610 INF: FPGA: 'ZDACW 36115' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:48.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:48.494 -07 000000501 INF: FPGA: Recv ZDACR 36115
17-03-18 05:41:48.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:48.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35024
17-03-18 05:41:48.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:41:48.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35023
17-03-18 05:41:48.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35023
17-03-18 05:41:48.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.694 -07 000000487 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:41:48.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.704 -07 000000590 INF: FPGA: Recv ZSGSRD 35026
17-03-18 05:41:48.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.714 -07 000000569 INF: FPGA: Recv ZSGSRD 35025
17-03-18 05:41:48.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.724 -07 000000382 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:41:48.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.734 -07 000000501 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:41:48.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:48.744 -07 000000487 INF: FPGA: Recv ZSGSRD 35025
17-03-18 05:41:48.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:48.754 -07 000000012 INF: FPGA: Recv ZPIEZORD 30704
17-03-18 05:41:48.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:48.764 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.511 V. Piezo Error = -9.5 V.
17-03-18 05:41:48.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35026 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35026 (-164.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35023 (-164.5 uncal um), Max = 35030 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:41:48.764 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35026, posNoise = 4, negNoise = 3
17-03-18 05:41:48.764 -07 000000610 INF: Z Motor: After move to -0.165324, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:48.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:41:48.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:48.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:48.764 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:48.764 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:48.764 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:48.764 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:48.764 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:48.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:48.764 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:48.764 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:48.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:41:48.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:48.774 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:48.774 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:48.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:48.774 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:48.774 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:41:48.774 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:41:48.784 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:41:48.784 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:41:48.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36292 150\n [Camera]
17-03-18 05:41:48.984 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:41:49.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:49.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:49.434 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:49.434 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:49.434 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:41:49.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:49.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:49.434 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:49.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:49.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:41:49.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36292 828
17-03-18 05:41:49.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:49.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:41:49.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:41:49.834 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:49.834 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:41:49.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:41:49.834 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:49.834 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:49.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:41:49.834 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:49.844 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:41:49.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1195
17-03-18 05:41:49.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1195
17-03-18 05:41:49.994 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:49.994 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:49.994 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:41:49.994 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1195
17-03-18 05:41:49.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1195
17-03-18 05:41:49.994 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:49.994 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:49.994 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:41:50.174 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:50.174 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:50.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36292 150' command took 2 ms to send, 1386 ms to get response, and 1391 ms overall
17-03-18 05:41:50.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:41:50.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165337806488454. ------
17-03-18 05:41:50.294 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17167 mm
17-03-18 05:41:50.294 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:50.294 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:41:50.294 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:41:50.304 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:50.304 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.986717,
17-03-18 05:41:50.304 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37501, sync = True, waitForSettling = False)
17-03-18 05:41:50.304 -07 000000474 INF: Z Motor: Moving to -0.171669 mm, started at -0.165338 mm, distance = -6.33 um
17-03-18 05:41:50.304 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:41:50.314 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:50.314 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:50.314 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:50.314 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:50.314 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:41:50.314 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:41:50.324 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:41:50.334 -07 000000474 INF: FPGA: Xmit ZDACW 37501\n [Z Motor]
17-03-18 05:41:50.334 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:41:50.344 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:41:50.344 -07 000000474 INF: FPGA: 'ZDACW 37501' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 05:41:50.354 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:50.374 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:50.374 -07 000000455 INF: FPGA: Recv ZDACR 37501
17-03-18 05:41:50.384 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:41:50.384 -07 000000474 INF: Z Motor: MoveAbsStepped took 79 ms (did NOT wait for settling yet))
17-03-18 05:41:50.394 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:41:50.394 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:41:50.394 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:50.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:41:50.394 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:41:50.394 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:50.404 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:50.404 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:41:50.404 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:41:50.404 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:41:50.554 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:50.554 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:41:50.714 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:41:50.714 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-18 05:41:50.744 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:50.754 -07 000000606 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:41:50.764 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:50.764 -07 000000501 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:50.764 -07 000000501 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:41:50.764 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.845 mm, average velocity = 2.097 mm/sec
17-03-18 05:41:51.714 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:51.714 -07 000000455 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:41:51.724 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:51.724 -07 000000501 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:51.744 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:51.744 -07 000000501 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:41:51.744 -07 000000501 INF: Y Motor: Moved to 74.8311 after 1443 ms (table move)
17-03-18 05:41:51.744 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171669 mm (DAC = 37501)
17-03-18 05:41:51.744 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.744 -07 000000611 INF: FPGA: Recv ZSGSRD 36022
17-03-18 05:41:51.754 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:41:51.754 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.754 -07 000000579 INF: FPGA: Recv ZSGSRD 36007
17-03-18 05:41:51.764 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.764 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:41:51.774 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.774 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.774 -07 000000629 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:41:51.784 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.784 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.784 -07 000000629 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:41:51.784 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:51.794 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.794 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.794 -07 000000455 INF: FPGA: Recv ZSGSRD 36019
17-03-18 05:41:51.804 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.804 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.804 -07 000000455 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:41:51.814 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.814 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.814 -07 000000606 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:41:51.824 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.824 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.824 -07 000000606 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:41:51.834 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.834 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:51.834 -07 000000455 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:41:51.844 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.844 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:51.844 -07 000000606 INF: FPGA: Recv ZPIEZORD 32043
17-03-18 05:41:51.854 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.8 V.
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36004 (-170.7 uncal um), Max = 36022 (-170.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 9, negNoise = 9
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: After move to -0.171669, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-18 05:41:51.854 -07 000000437 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:51.904 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 05:41:51.904 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:51.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:51.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:51.904 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:51.904 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:51.904 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:51.904 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:51.904 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:41:51.904 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:51.904 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:51.914 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:51.914 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:41:51.914 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:41:51.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:51.964 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:41:52.264 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:41:52.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:41:52.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:41:52.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:41:52.304 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:41:52.304 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:41:52.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:41:52.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:41:52.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:52.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:41:52.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:41:52.404 -07 000000455 INF: Autofocus start
17-03-18 05:41:52.404 -07 000000455 INF: MeasureProfile start
17-03-18 05:41:52.404 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:52.404 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:52.414 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:52.414 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:41:52.414 -07 000000455 INF: MeasureProfile done
17-03-18 05:41:52.414 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:41:52.414 -07 000000455 INF: Autofocus finished
17-03-18 05:41:52.614 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:41:52.614 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:41:52.614 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171678503872372. ----------
17-03-18 05:41:52.614 -07 000000610 INF: Cycle	140	Tile	19	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:41:52.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36016, sync = True, waitForSettling = True)
17-03-18 05:41:52.624 -07 000000610 INF: Z Motor: Moving to -0.164871 mm, started at -0.171679 mm, distance = 6.81 um
17-03-18 05:41:52.634 -07 000000610 INF: FPGA: Xmit ZDACW 36016\n [Z Motor]
17-03-18 05:41:52.634 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:41:52.644 -07 000000610 INF: FPGA: 'ZDACW 36016' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:41:52.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:52.644 -07 000000606 INF: FPGA: Recv ZDACR 36016
17-03-18 05:41:52.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:41:52.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.804 -07 000000455 INF: FPGA: Recv ZSGSRD 34962
17-03-18 05:41:52.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:52.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.814 -07 000000437 INF: FPGA: Recv ZSGSRD 34958
17-03-18 05:41:52.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:52.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.824 -07 000000437 INF: FPGA: Recv ZSGSRD 34953
17-03-18 05:41:52.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.834 -07 000000455 INF: FPGA: Recv ZSGSRD 34950
17-03-18 05:41:52.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.844 -07 000000455 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:41:52.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.854 -07 000000437 INF: FPGA: Recv ZSGSRD 34959
17-03-18 05:41:52.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.864 -07 000000629 INF: FPGA: Recv ZSGSRD 34953
17-03-18 05:41:52.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.874 -07 000000455 INF: FPGA: Recv ZSGSRD 34950
17-03-18 05:41:52.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.884 -07 000000437 INF: FPGA: Recv ZSGSRD 34948
17-03-18 05:41:52.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:52.894 -07 000000606 INF: FPGA: Recv ZSGSRD 34954
17-03-18 05:41:52.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:52.904 -07 000000455 INF: FPGA: Recv ZPIEZORD 30626
17-03-18 05:41:52.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:52.914 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.496 V. Piezo Error = -9.5 V.
17-03-18 05:41:52.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34954 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34954 (-164.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34948 (-164.0 uncal um), Max = 34962 (-164.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:41:52.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34954, posNoise = 8, negNoise = 6
17-03-18 05:41:52.914 -07 000000610 INF: Z Motor: After move to -0.164871, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:52.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 05:41:52.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:52.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:52.914 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:52.914 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:41:52.914 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:52.914 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:41:52.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:41:52.914 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:52.914 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:52.914 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:41:52.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:41:52.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:41:52.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:41:52.924 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:41:52.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:41:52.924 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:41:52.924 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:41:52.924 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:52.924 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:41:52.934 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:41:52.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36193 150\n [Camera]
17-03-18 05:41:53.144 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 05:41:53.584 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:41:53.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:41:53.584 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:53.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:41:53.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:41:53.584 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:53.594 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:53.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:41:53.594 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:53.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:41:53.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36193 828
17-03-18 05:41:53.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:41:53.984 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:41:53.984 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:41:53.984 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:53.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:41:53.984 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:41:53.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:53.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:53.984 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:41:53.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:41:53.994 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:41:54.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:41:54.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:41:54.144 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:41:54.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:41:54.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:41:54.144 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:41:54.154 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:41:54.154 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:41:54.154 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:41:54.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:41:54.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:41:54.334 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:41:54.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36193 150' command took 2 ms to send, 1381 ms to get response, and 1397 ms overall
17-03-18 05:41:54.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:41:54.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:41:54.554 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:54.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:41:54.554 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:41:54.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:41:54.554 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:54.554 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:41:54.554 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:41:54.554 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:41:54.564 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:41:54.594 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 05:41:54.594 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:41:54.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:41:54.644 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:41:54.644 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:41:54.644 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-18 05:41:54.654 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:54.654 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:41:55.154 -07 000000606 INF: FPGA: Recv EMIN
17-03-18 05:41:55.154 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:41:55.154 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:41:55.154 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 05:41:55.164 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:41:55.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:41:55.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164875263214247. ------
17-03-18 05:41:55.164 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13931 mm
17-03-18 05:41:55.164 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:41:55.164 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:41:55.174 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30432, sync = True, waitForSettling = False)
17-03-18 05:41:55.174 -07 000000424 INF: Z Motor: Moving to -0.139309 mm, started at -0.164875 mm, distance = 25.57 um
17-03-18 05:41:55.174 -07 000000424 INF: FPGA: Xmit ZDACW 30432\n [Z Motor]
17-03-18 05:41:55.174 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:41:55.174 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:41:55.174 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:41:55.174 -07 000000444 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:41:55.174 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:41:55.184 -07 000000424 INF: FPGA: 'ZDACW 30432' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:41:55.184 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:41:55.194 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:55.194 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 05:41:55.204 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:41:55.204 -07 000000444 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:55.204 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:41:55.204 -07 000000590 INF: FPGA: Recv ZDACR 30432
17-03-18 05:41:55.214 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:41:55.214 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:41:55.214 -07 000000444 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:41:55.214 -07 000000444 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:41:55.214 -07 000000444 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:41:55.384 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:41:55.384 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-18 05:41:55.724 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.007176,
17-03-18 05:41:56.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:41:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:41:56.844 -07 000000618 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 05:41:56.844 -07 000000444 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1630 ms overall
17-03-18 05:41:56.844 -07 000000444 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:41:56.844 -07 000000444 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:41:56.844 -07 000000444 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1630 ms, distance = 14.918 mm, average velocity = 9.152 mm/sec
17-03-18 05:41:59.694 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:41:59.694 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:41:59.704 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:41:59.704 -07 000000444 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:41:59.744 -07 000000444 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:41:59.744 -07 000000444 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:41:59.744 -07 000000444 INF: Y Motor: Moved to 59.9102 after 4570 ms
17-03-18 05:41:59.744 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139309 mm (DAC = 30432)
17-03-18 05:41:59.744 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.754 -07 000000611 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:41:59.754 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:41:59.754 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.754 -07 000000611 INF: FPGA: Recv ZSGSRD 30981
17-03-18 05:41:59.764 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.764 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.764 -07 000000444 INF: FPGA: Recv ZSGSRD 30971
17-03-18 05:41:59.774 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.774 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.774 -07 000000444 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:41:59.784 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.784 -07 000000611 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:41:59.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.794 -07 000000444 INF: FPGA: Recv ZSGSRD 30969
17-03-18 05:41:59.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.804 -07 000000611 INF: FPGA: Recv ZSGSRD 30979
17-03-18 05:41:59.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.814 -07 000000444 INF: FPGA: Recv ZSGSRD 30969
17-03-18 05:41:59.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.824 -07 000000444 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:41:59.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:41:59.834 -07 000000611 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:41:59.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.844 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:41:59.844 -07 000000444 INF: FPGA: Recv ZPIEZORD 26445
17-03-18 05:41:59.854 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.9 V.
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30974 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30973 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30969 (-138.5 uncal um), Max = 30981 (-138.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30974, posNoise = 7, negNoise = 5
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: After move to -0.139309, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: Settle wait time = 4576 ms, measure time = 103 ms (allowed 150 ms), total time = 4679 ms
17-03-18 05:41:59.854 -07 000000629 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:41:59.904 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4731 ms
17-03-18 05:41:59.904 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:41:59.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:41:59.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:41:59.904 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:41:59.904 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:41:59.904 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:41:59.904 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:41:59.904 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:41:59.904 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:41:59.924 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 05:41:59.924 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:41:59.934 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:41:59.934 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:41:59.934 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:41:59.934 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 05:41:59.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:41:59.984 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:42:00.284 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:42:00.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:42:00.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:00.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:00.324 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:00.324 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:00.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:42:00.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:42:00.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:00.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:00.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:42:00.424 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:00.424 -07 000000611 INF: Image SNR check: start
17-03-18 05:42:00.424 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:00.434 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:00.434 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:00.454 -07 000000611 INF: Image SNR check: pass  [peak (Max-Min)=120.89]
17-03-18 05:42:00.454 -07 000000611 INF: Autofocus start
17-03-18 05:42:00.454 -07 000000611 INF: MeasureProfile start
17-03-18 05:42:00.474 -07 000000611 INF: MeasureProfile done
17-03-18 05:42:00.474 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:42:00.474 -07 000000611 INF: Autofocus finished
17-03-18 05:42:00.634 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:00.634 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 05:42:00.644 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139306898890039. ----------
17-03-18 05:42:00.644 -07 000000610 INF: Cycle	140	Tile	1	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:00.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28939, sync = True, waitForSettling = True)
17-03-18 05:42:00.644 -07 000000610 INF: Z Motor: Moving to -0.132474 mm, started at -0.139307 mm, distance = 6.83 um
17-03-18 05:42:00.644 -07 000000610 INF: FPGA: Xmit ZDACW 28939\n [Z Motor]
17-03-18 05:42:00.644 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:42:00.654 -07 000000610 INF: FPGA: 'ZDACW 28939' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:42:00.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:00.654 -07 000000611 INF: FPGA: Recv ZDACR 28939
17-03-18 05:42:00.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:00.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.814 -07 000000382 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:42:00.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:00.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.824 -07 000000629 INF: FPGA: Recv ZSGSRD 29906
17-03-18 05:42:00.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.834 -07 000000611 INF: FPGA: Recv ZSGSRD 29905
17-03-18 05:42:00.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.844 -07 000000382 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:42:00.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.854 -07 000000629 INF: FPGA: Recv ZSGSRD 29906
17-03-18 05:42:00.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.864 -07 000000629 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:42:00.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.874 -07 000000629 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:42:00.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.884 -07 000000629 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:42:00.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.894 -07 000000629 INF: FPGA: Recv ZSGSRD 29909
17-03-18 05:42:00.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:00.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:42:00.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:00.914 -07 000000629 INF: FPGA: Recv ZPIEZORD 25294
17-03-18 05:42:00.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:00.924 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 05:42:00.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29909 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29908 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29905 (-131.7 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:42:00.924 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29909, posNoise = 3, negNoise = 4
17-03-18 05:42:00.924 -07 000000610 INF: Z Motor: After move to -0.132474, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:00.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 05:42:00.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:00.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:00.924 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:00.924 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:00.924 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:00.924 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:00.924 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:00.924 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:00.924 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:00.924 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:42:00.924 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:00.924 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:00.934 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:00.934 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:00.934 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:00.934 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:00.944 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:42:00.944 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:00.954 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:00.954 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:00.964 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:42:00.964 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 05:42:00.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29116 150\n [Camera]
17-03-18 05:42:01.084 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.008536,
17-03-18 05:42:01.164 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:01.604 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:01.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:01.604 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:01.614 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:01.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:01.614 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:01.614 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:01.614 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:01.614 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:01.614 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:01.784 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:01.804 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 828
17-03-18 05:42:01.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:02.004 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:42:02.004 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:42:02.004 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:02.014 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:42:02.014 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:42:02.014 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:02.014 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:02.014 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:42:02.014 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:02.024 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:42:02.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:02.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:02.164 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:02.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:02.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:02.164 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:02.164 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:02.164 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:42:02.174 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:02.174 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:42:02.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:02.354 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:02.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29116 150' command took 2 ms to send, 1387 ms to get response, and 1390 ms overall
17-03-18 05:42:02.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:02.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132465112959063. ------
17-03-18 05:42:02.364 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:02.364 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13889 mm
17-03-18 05:42:02.364 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:02.364 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:02.364 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:42:02.364 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:42:02.364 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-18 05:42:02.364 -07 000000585 INF: Z Motor: Moving to -0.138888 mm, started at -0.132465 mm, distance = -6.42 um
17-03-18 05:42:02.374 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:02.374 -07 000000585 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-18 05:42:02.374 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:42:02.384 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:02.384 -07 000000585 INF: FPGA: 'ZDACW 30340' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:42:02.384 -07 000000487 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:42:02.394 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:42:02.394 -07 000000474 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:02.394 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:02.394 -07 000000474 INF: Y Motor: Moving 1332 steps1
17-03-18 05:42:02.394 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:02.404 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:02.404 -07 000000444 INF: FPGA: Recv ZDACR 30340
17-03-18 05:42:02.414 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:02.414 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:02.414 -07 000000585 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:42:02.564 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:42:02.564 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:42:02.564 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:02.574 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:42:02.574 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:42:02.574 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:02.574 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:02.574 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:42:02.574 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:02.584 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:42:02.594 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:02.594 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:42:02.784 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:42:02.784 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:42:02.824 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:02.834 -07 000000012 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:42:02.834 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:42:02.834 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:02.834 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:42:02.834 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 05:42:03.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:04.314 -07 000000579 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:42:04.314 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 530 ms overall
17-03-18 05:42:04.314 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:04.344 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:04.344 -07 000000474 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:04.344 -07 000000474 INF: Y Motor: Moved to 60.7324 after 1978 ms (table move)
17-03-18 05:42:04.344 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-18 05:42:04.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.354 -07 000000585 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:42:04.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:42:04.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.354 -07 000000474 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:42:04.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:04.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.364 -07 000000474 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:42:04.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.374 -07 000000474 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:42:04.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.384 -07 000000474 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:42:04.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.394 -07 000000474 INF: FPGA: Recv ZSGSRD 30911
17-03-18 05:42:04.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.404 -07 000000474 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:42:04.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.414 -07 000000611 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:42:04.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.424 -07 000000487 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:42:04.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:04.434 -07 000000474 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:42:04.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.444 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:04.444 -07 000000611 INF: FPGA: Recv ZPIEZORD 26647
17-03-18 05:42:04.454 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30908 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30907 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30915 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30908, posNoise = 7, negNoise = 5
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: After move to -0.138888, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: Settle wait time = 1981 ms, measure time = 101 ms (allowed 150 ms), total time = 2082 ms
17-03-18 05:42:04.454 -07 000000591 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:04.504 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2137 ms
17-03-18 05:42:04.504 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:04.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:04.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:04.504 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:04.504 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:04.504 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:04.504 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:04.504 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:04.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:04.514 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:04.514 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:04.524 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:42:04.524 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:42:04.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:04.574 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:04.874 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:04.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:04.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:04.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:42:04.914 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:04.914 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:04.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:42:05.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 05:42:05.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:05.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:05.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:42:05.014 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:05.014 -07 000000444 INF: Autofocus start
17-03-18 05:42:05.014 -07 000000444 INF: MeasureProfile start
17-03-18 05:42:05.014 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:05.024 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:05.024 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:05.024 -07 000000444 INF: MeasureProfile done
17-03-18 05:42:05.024 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:42:05.024 -07 000000444 INF: Autofocus finished
17-03-18 05:42:05.224 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:05.224 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:05.224 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138882900888683. ----------
17-03-18 05:42:05.224 -07 000000610 INF: Cycle	140	Tile	2	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:05.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28848, sync = True, waitForSettling = True)
17-03-18 05:42:05.234 -07 000000610 INF: Z Motor: Moving to -0.132058 mm, started at -0.138883 mm, distance = 6.83 um
17-03-18 05:42:05.234 -07 000000610 INF: FPGA: Xmit ZDACW 28848\n [Z Motor]
17-03-18 05:42:05.234 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:42:05.244 -07 000000610 INF: FPGA: 'ZDACW 28848' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:05.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:05.244 -07 000000444 INF: FPGA: Recv ZDACR 28848
17-03-18 05:42:05.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.404 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:42:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.414 -07 000000591 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:42:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.424 -07 000000382 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:42:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.434 -07 000000444 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:42:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:42:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.454 -07 000000444 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:42:05.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:42:05.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.474 -07 000000444 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:42:05.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.484 -07 000000487 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:42:05.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:05.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:42:05.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:05.504 -07 000000444 INF: FPGA: Recv ZPIEZORD 25249
17-03-18 05:42:05.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:05.514 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 05:42:05.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29844 (-131.3 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:42:05.514 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 4, negNoise = 2
17-03-18 05:42:05.514 -07 000000610 INF: Z Motor: After move to -0.132058, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:05.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:42:05.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:05.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:05.514 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:05.514 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:05.514 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:05.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:05.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:42:05.514 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:05.514 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:05.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:05.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:05.514 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:05.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:05.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:05.524 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:42:05.524 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:05.534 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:42:05.534 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:42:05.534 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:42:05.534 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:42:05.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29024 150\n [Camera]
17-03-18 05:42:05.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:06.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:06.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:06.184 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:06.184 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:06.184 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:42:06.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:06.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:06.184 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:06.184 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:06.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:42:06.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 828
17-03-18 05:42:06.444 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.014009,
17-03-18 05:42:06.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:06.584 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:06.584 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:42:06.584 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:06.584 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:06.584 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:42:06.584 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:42:06.584 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:42:06.584 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:06.594 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:42:06.604 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:42:06.734 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:06.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:06.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:06.744 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:06.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:42:06.744 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:06.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:06.744 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:06.744 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:06.744 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:42:06.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:06.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:06.934 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:06.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29024 150' command took 2 ms to send, 1381 ms to get response, and 1391 ms overall
17-03-18 05:42:06.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:06.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132060387594133. ------
17-03-18 05:42:06.934 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:06.934 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13896 mm
17-03-18 05:42:06.934 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:06.934 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:42:07.054 -07 000000579 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:42:07.054 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30357, sync = True, waitForSettling = False)
17-03-18 05:42:07.054 -07 000000444 INF: Z Motor: Moving to -0.138965 mm, started at -0.132060 mm, distance = -6.91 um
17-03-18 05:42:07.054 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:07.054 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 117 ms overall
17-03-18 05:42:07.054 -07 000000444 INF: FPGA: Xmit ZDACW 30357\n [Z Motor]
17-03-18 05:42:07.054 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:42:07.064 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:07.064 -07 000000444 INF: FPGA: 'ZDACW 30357' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:07.074 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:07.074 -07 000000590 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:42:07.084 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:07.084 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:42:07.084 -07 000000579 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:07.084 -07 000000579 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:07.084 -07 000000579 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:42:07.084 -07 000000487 INF: FPGA: Recv ZDACR 30357
17-03-18 05:42:07.094 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:07.094 -07 000000444 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:42:07.094 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:07.134 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:42:07.134 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:42:07.134 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:07.144 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:42:07.144 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:42:07.144 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:07.144 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:07.144 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:42:07.144 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:42:07.154 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:42:07.264 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:07.264 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 05:42:07.464 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:42:07.464 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 05:42:07.514 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:07.524 -07 000000629 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:42:07.524 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:42:07.524 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:07.524 -07 000000579 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:42:07.524 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 05:42:08.474 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:08.474 -07 000000629 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:42:08.484 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.484 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:08.514 -07 000000579 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:08.514 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:08.514 -07 000000579 INF: Y Motor: Moved to 61.5630 after 1459 ms (table move)
17-03-18 05:42:08.514 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138965 mm (DAC = 30357)
17-03-18 05:42:08.514 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.514 -07 000000590 INF: FPGA: Recv ZSGSRD 30926
17-03-18 05:42:08.524 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:08.524 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.524 -07 000000591 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:42:08.534 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.534 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.534 -07 000000590 INF: FPGA: Recv ZSGSRD 30925
17-03-18 05:42:08.544 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.544 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.544 -07 000000591 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:42:08.554 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.554 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.554 -07 000000474 INF: FPGA: Recv ZSGSRD 30922
17-03-18 05:42:08.564 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.564 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.564 -07 000000590 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:42:08.574 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.574 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.574 -07 000000424 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:42:08.584 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.584 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.584 -07 000000487 INF: FPGA: Recv ZSGSRD 30924
17-03-18 05:42:08.594 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.594 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.594 -07 000000629 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:42:08.604 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.604 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:08.604 -07 000000424 INF: FPGA: Recv ZSGSRD 30926
17-03-18 05:42:08.614 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.614 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:08.614 -07 000000487 INF: FPGA: Recv ZPIEZORD 26722
17-03-18 05:42:08.624 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.2 V.
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30923 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30916 (-138.1 uncal um), Max = 30926 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 4, negNoise = 6
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: After move to -0.138965, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:42:08.624 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:08.674 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 05:42:08.674 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:08.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:08.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:08.674 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:08.674 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:08.674 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:08.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:08.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:08.674 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:08.684 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:08.684 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:08.684 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:08.684 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:42:08.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:08.734 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:09.034 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:09.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:09.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:09.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:09.074 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:09.074 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:09.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:42:09.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:09.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:09.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:09.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:09.174 -07 000000455 INF: Autofocus start
17-03-18 05:42:09.174 -07 000000455 INF: MeasureProfile start
17-03-18 05:42:09.174 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:09.174 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:09.184 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:09.184 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:09.184 -07 000000455 INF: MeasureProfile done
17-03-18 05:42:09.184 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:42:09.184 -07 000000455 INF: Autofocus finished
17-03-18 05:42:09.384 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:09.384 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:09.384 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138972839858667. ----------
17-03-18 05:42:09.384 -07 000000610 INF: Cycle	140	Tile	3	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:09.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28851, sync = True, waitForSettling = True)
17-03-18 05:42:09.394 -07 000000610 INF: Z Motor: Moving to -0.132071 mm, started at -0.138973 mm, distance = 6.90 um
17-03-18 05:42:09.394 -07 000000610 INF: FPGA: Xmit ZDACW 28851\n [Z Motor]
17-03-18 05:42:09.394 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:42:09.404 -07 000000610 INF: FPGA: 'ZDACW 28851' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:09.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:09.404 -07 000000591 INF: FPGA: Recv ZDACR 28851
17-03-18 05:42:09.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:09.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.564 -07 000000012 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:42:09.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:09.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.574 -07 000000487 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:42:09.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.584 -07 000000424 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:42:09.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.594 -07 000000591 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:42:09.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.604 -07 000000012 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:42:09.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.614 -07 000000487 INF: FPGA: Recv ZSGSRD 29857
17-03-18 05:42:09.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.624 -07 000000455 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:42:09.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.634 -07 000000591 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:42:09.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:09.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.654 -07 000000012 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:42:09.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:09.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:09.674 -07 000000585 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:42:09.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:09.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:09.704 -07 000000591 INF: FPGA: Recv ZPIEZORD 25330
17-03-18 05:42:09.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:09.714 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.9 V.
17-03-18 05:42:09.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29857 (-131.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:09.714 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 8, negNoise = 5
17-03-18 05:42:09.714 -07 000000610 INF: Z Motor: After move to -0.132071, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:09.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 05:42:09.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:09.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:09.714 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:09.714 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:09.714 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:09.714 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:09.714 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:09.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:09.714 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:09.714 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:09.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:09.714 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:09.724 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:09.724 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:09.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:09.724 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:09.734 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:09.734 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:09.734 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:42:09.734 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:09.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29028 150\n [Camera]
17-03-18 05:42:09.934 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:10.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:10.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:10.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:10.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:10.374 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:10.374 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:10.384 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:10.384 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:10.384 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:10.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:10.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29028 828
17-03-18 05:42:10.714 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:10.784 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:10.784 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:10.784 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:10.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:42:10.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:42:10.784 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:10.784 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:10.784 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:42:10.784 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:10.794 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:42:10.934 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:10.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:10.934 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:10.934 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:10.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:10.934 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:10.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:10.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:42:10.944 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:10.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:42:11.124 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:11.124 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:11.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29028 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:42:11.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:11.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132079660230558. ------
17-03-18 05:42:11.124 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:11.244 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13858 mm
17-03-18 05:42:11.244 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:11.244 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:11.254 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:42:11.254 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:42:11.254 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30273, sync = True, waitForSettling = False)
17-03-18 05:42:11.254 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:11.254 -07 000000585 INF: Z Motor: Moving to -0.138581 mm, started at -0.132080 mm, distance = -6.50 um
17-03-18 05:42:11.254 -07 000000455 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:42:11.264 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:11.264 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:42:11.274 -07 000000585 INF: FPGA: Xmit ZDACW 30273\n [Z Motor]
17-03-18 05:42:11.274 -07 000000455 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:42:11.274 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:11.274 -07 000000455 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:11.274 -07 000000455 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:42:11.274 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:42:11.284 -07 000000585 INF: FPGA: 'ZDACW 30273' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:11.284 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:11.284 -07 000000611 INF: FPGA: Recv ZDACR 30273
17-03-18 05:42:11.294 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:11.294 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:11.294 -07 000000585 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:42:11.324 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:42:11.324 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:42:11.324 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:11.334 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:11.334 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:42:11.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:11.334 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:11.334 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:11.344 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:11.344 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:42:11.454 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:11.454 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:11.664 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:42:11.664 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:42:11.714 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:11.724 -07 000000585 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:42:11.724 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:11.724 -07 000000455 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:11.724 -07 000000455 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:42:11.724 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:42:11.794 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:11.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:11.804 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.027603,
17-03-18 05:42:12.674 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:12.674 -07 000000611 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:42:12.684 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:12.684 -07 000000455 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:12.714 -07 000000455 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:12.714 -07 000000455 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:42:12.714 -07 000000455 INF: Y Motor: Moved to 62.3950 after 1461 ms (table move)
17-03-18 05:42:12.714 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138581 mm (DAC = 30273)
17-03-18 05:42:12.714 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.714 -07 000000585 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:42:12.724 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:12.724 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.724 -07 000000455 INF: FPGA: Recv ZSGSRD 30862
17-03-18 05:42:12.734 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.734 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.734 -07 000000424 INF: FPGA: Recv ZSGSRD 30859
17-03-18 05:42:12.744 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.744 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.744 -07 000000611 INF: FPGA: Recv ZSGSRD 30862
17-03-18 05:42:12.754 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.754 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.754 -07 000000424 INF: FPGA: Recv ZSGSRD 30855
17-03-18 05:42:12.764 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.764 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.764 -07 000000455 INF: FPGA: Recv ZSGSRD 30864
17-03-18 05:42:12.774 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.774 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.774 -07 000000590 INF: FPGA: Recv ZSGSRD 30865
17-03-18 05:42:12.784 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.784 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.784 -07 000000455 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:42:12.794 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.794 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.794 -07 000000590 INF: FPGA: Recv ZSGSRD 30860
17-03-18 05:42:12.804 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.804 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:12.804 -07 000000455 INF: FPGA: Recv ZSGSRD 30859
17-03-18 05:42:12.814 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.814 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:12.814 -07 000000590 INF: FPGA: Recv ZPIEZORD 26649
17-03-18 05:42:12.824 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.3 V.
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30862 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30855 (-137.7 uncal um), Max = 30870 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30862, posNoise = 8, negNoise = 7
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: After move to -0.138581, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:42:12.824 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:12.874 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:42:12.874 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:12.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:12.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:12.874 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:12.874 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:12.874 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:12.874 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:12.874 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:12.874 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:12.884 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:12.884 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:12.884 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:12.884 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:42:12.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:12.934 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:13.234 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:13.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:13.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:13.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:13.274 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:13.274 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:13.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:42:13.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:13.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:13.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:13.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:13.374 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:13.374 -07 000000444 INF: Autofocus start
17-03-18 05:42:13.374 -07 000000444 INF: MeasureProfile start
17-03-18 05:42:13.374 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:13.384 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:13.384 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:13.384 -07 000000444 INF: MeasureProfile done
17-03-18 05:42:13.384 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:42:13.384 -07 000000444 INF: Autofocus finished
17-03-18 05:42:13.584 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:13.584 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:13.584 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138587387130162. ----------
17-03-18 05:42:13.584 -07 000000610 INF: Cycle	140	Tile	4	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:13.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28798, sync = True, waitForSettling = True)
17-03-18 05:42:13.594 -07 000000610 INF: Z Motor: Moving to -0.131829 mm, started at -0.138587 mm, distance = 6.76 um
17-03-18 05:42:13.594 -07 000000610 INF: FPGA: Xmit ZDACW 28798\n [Z Motor]
17-03-18 05:42:13.594 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:42:13.604 -07 000000610 INF: FPGA: 'ZDACW 28798' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:13.604 -07 000000012 INF: FPGA: Recv ZDACR 28798
17-03-18 05:42:13.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:13.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.764 -07 000000455 INF: FPGA: Recv ZSGSRD 29808
17-03-18 05:42:13.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:13.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.774 -07 000000012 INF: FPGA: Recv ZSGSRD 29819
17-03-18 05:42:13.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:13.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.784 -07 000000611 INF: FPGA: Recv ZSGSRD 29821
17-03-18 05:42:13.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.794 -07 000000585 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:42:13.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.804 -07 000000590 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:42:13.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.814 -07 000000444 INF: FPGA: Recv ZSGSRD 29804
17-03-18 05:42:13.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.824 -07 000000424 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:42:13.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.834 -07 000000455 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:42:13.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.844 -07 000000382 INF: FPGA: Recv ZSGSRD 29807
17-03-18 05:42:13.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:13.854 -07 000000585 INF: FPGA: Recv ZSGSRD 29819
17-03-18 05:42:13.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:13.864 -07 000000590 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 05:42:13.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:13.874 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V.
17-03-18 05:42:13.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29811 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29803 (-131.0 uncal um), Max = 29821 (-131.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:42:13.874 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29811, posNoise = 10, negNoise = 8
17-03-18 05:42:13.874 -07 000000610 INF: Z Motor: After move to -0.131829, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:13.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:42:13.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:13.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:13.874 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:13.874 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:13.874 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:13.874 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:13.874 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:13.874 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:13.874 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:13.874 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:13.874 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:13.874 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:13.874 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:13.874 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:13.884 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:13.884 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:13.894 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:42:13.894 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:42:13.894 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:42:13.894 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:42:13.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28974 150\n [Camera]
17-03-18 05:42:14.094 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:14.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:14.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:14.544 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:14.544 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:14.544 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:14.544 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:14.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:14.544 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:14.544 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:14.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:14.734 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28974 828
17-03-18 05:42:14.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:14.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:42:14.934 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:42:14.934 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:14.944 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:42:14.944 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:42:14.944 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:14.944 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:14.944 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:42:14.944 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:14.954 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:42:15.094 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:15.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:15.094 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:15.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:15.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:15.094 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:15.094 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:15.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:42:15.104 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:15.104 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:42:15.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:15.284 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:15.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28974 150' command took 2 ms to send, 1387 ms to get response, and 1391 ms overall
17-03-18 05:42:15.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:15.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131835540169171. ------
17-03-18 05:42:15.294 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:15.294 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13820 mm
17-03-18 05:42:15.294 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:15.294 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:42:15.294 -07 000000455 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:42:15.294 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30190, sync = True, waitForSettling = False)
17-03-18 05:42:15.294 -07 000000590 INF: Z Motor: Moving to -0.138201 mm, started at -0.131836 mm, distance = -6.37 um
17-03-18 05:42:15.294 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:15.304 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:15.304 -07 000000590 INF: FPGA: Xmit ZDACW 30190\n [Z Motor]
17-03-18 05:42:15.304 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:42:15.314 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:15.314 -07 000000590 INF: FPGA: 'ZDACW 30190' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:42:15.314 -07 000000585 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:42:15.324 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:42:15.324 -07 000000455 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:15.324 -07 000000455 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:15.324 -07 000000455 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:42:15.324 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:15.334 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:15.334 -07 000000585 INF: FPGA: Recv ZDACR 30190
17-03-18 05:42:15.344 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:15.344 -07 000000590 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:42:15.344 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:15.494 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:42:15.494 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:42:15.494 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:15.494 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:15.494 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:42:15.494 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:42:15.494 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:15.504 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:15.504 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:42:15.504 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:42:15.524 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:15.524 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:42:15.724 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:42:15.724 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 05:42:15.774 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:15.774 -07 000000437 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:42:15.784 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:15.784 -07 000000455 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:15.784 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:42:15.784 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-18 05:42:16.734 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:16.734 -07 000000437 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:42:16.744 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.744 -07 000000455 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:16.774 -07 000000455 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:16.774 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:42:16.774 -07 000000455 INF: Y Motor: Moved to 63.2231 after 1477 ms (table move)
17-03-18 05:42:16.774 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138201 mm (DAC = 30190)
17-03-18 05:42:16.774 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.784 -07 000000424 INF: FPGA: Recv ZSGSRD 30806
17-03-18 05:42:16.784 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:42:16.784 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.784 -07 000000501 INF: FPGA: Recv ZSGSRD 30810
17-03-18 05:42:16.794 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:16.794 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.794 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:16.794 -07 000000437 INF: FPGA: Recv ZSGSRD 30802
17-03-18 05:42:16.804 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.804 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.804 -07 000000590 INF: FPGA: Recv ZSGSRD 30802
17-03-18 05:42:16.814 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.814 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.814 -07 000000590 INF: FPGA: Recv ZSGSRD 30802
17-03-18 05:42:16.824 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.824 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30809
17-03-18 05:42:16.834 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.834 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.834 -07 000000455 INF: FPGA: Recv ZSGSRD 30800
17-03-18 05:42:16.844 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.854 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30805
17-03-18 05:42:16.864 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:16.864 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.864 -07 000000590 INF: FPGA: Recv ZSGSRD 30794
17-03-18 05:42:16.874 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.874 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:16.874 -07 000000590 INF: FPGA: Recv ZSGSRD 30802
17-03-18 05:42:16.884 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.884 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:16.884 -07 000000382 INF: FPGA: Recv ZPIEZORD 26604
17-03-18 05:42:16.894 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.2 V.
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30803 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30802 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30794 (-137.4 uncal um), Max = 30810 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30803, posNoise = 7, negNoise = 9
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: After move to -0.138201, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: Settle wait time = 1482 ms, measure time = 112 ms (allowed 150 ms), total time = 1594 ms
17-03-18 05:42:16.894 -07 000000611 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:16.934 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 05:42:16.934 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:16.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:16.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:16.934 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:16.934 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:16.934 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:16.934 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:16.944 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:16.944 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:16.944 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:16.944 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:16.954 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:42:16.954 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:42:16.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:16.994 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:17.164 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.005817,
17-03-18 05:42:17.294 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:17.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:17.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:17.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:42:17.334 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:17.334 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:17.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:42:17.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:42:17.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:17.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:17.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:17.434 -07 000000455 INF: Autofocus start
17-03-18 05:42:17.434 -07 000000455 INF: MeasureProfile start
17-03-18 05:42:17.434 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:17.434 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:17.444 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:17.444 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:17.444 -07 000000455 INF: MeasureProfile done
17-03-18 05:42:17.444 -07 000000455 INF: X=64  Z correction [um]=0.2839165
17-03-18 05:42:17.444 -07 000000455 INF: Autofocus finished
17-03-18 05:42:17.644 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:17.644 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:42:17.654 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138208358613798. ----------
17-03-18 05:42:17.654 -07 000000610 INF: Cycle	140	Tile	5	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:17.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28765, sync = True, waitForSettling = True)
17-03-18 05:42:17.654 -07 000000610 INF: Z Motor: Moving to -0.131678 mm, started at -0.138208 mm, distance = 6.53 um
17-03-18 05:42:17.654 -07 000000610 INF: FPGA: Xmit ZDACW 28765\n [Z Motor]
17-03-18 05:42:17.654 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:42:17.664 -07 000000610 INF: FPGA: 'ZDACW 28765' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:17.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:17.664 -07 000000590 INF: FPGA: Recv ZDACR 28765
17-03-18 05:42:17.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:17.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.824 -07 000000012 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:42:17.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:17.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.834 -07 000000501 INF: FPGA: Recv ZSGSRD 29784
17-03-18 05:42:17.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.844 -07 000000012 INF: FPGA: Recv ZSGSRD 29780
17-03-18 05:42:17.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29782
17-03-18 05:42:17.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.864 -07 000000382 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:42:17.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29784
17-03-18 05:42:17.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:42:17.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:42:17.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.904 -07 000000012 INF: FPGA: Recv ZSGSRD 29785
17-03-18 05:42:17.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:17.914 -07 000000455 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:42:17.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:17.924 -07 000000382 INF: FPGA: Recv ZPIEZORD 25279
17-03-18 05:42:17.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:17.934 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-18 05:42:17.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29790 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:17.934 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 4, negNoise = 6
17-03-18 05:42:17.934 -07 000000610 INF: Z Motor: After move to -0.131678, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:17.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:42:17.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:17.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:17.934 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:17.934 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:17.934 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:17.934 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:17.934 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:17.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:17.934 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:42:17.934 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:17.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:17.934 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:17.944 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:17.944 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:17.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:17.944 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:17.954 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:17.954 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:17.954 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:42:17.954 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:17.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28942 150\n [Camera]
17-03-18 05:42:18.154 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:18.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:18.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:18.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:18.594 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:18.594 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:42:18.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:18.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:18.604 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:18.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:18.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:42:18.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28942 828
17-03-18 05:42:18.934 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:18.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:42:18.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:42:18.994 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:19.004 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:42:19.004 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:42:19.004 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:19.004 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:19.004 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:42:19.004 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:19.014 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:42:19.154 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:19.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:19.154 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:19.154 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:19.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:42:19.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:19.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:19.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:19.154 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:19.154 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:42:19.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:19.344 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:19.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28942 150' command took 2 ms to send, 1385 ms to get response, and 1393 ms overall
17-03-18 05:42:19.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:19.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131674934865627. ------
17-03-18 05:42:19.354 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:19.464 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:19.464 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13806 mm
17-03-18 05:42:19.464 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:19.464 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:42:19.464 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:42:19.474 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:19.474 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30158, sync = True, waitForSettling = False)
17-03-18 05:42:19.474 -07 000000569 INF: Z Motor: Moving to -0.138054 mm, started at -0.131675 mm, distance = -6.38 um
17-03-18 05:42:19.474 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 114 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 05:42:19.474 -07 000000474 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:42:19.484 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:19.484 -07 000000447 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:19.484 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:19.484 -07 000000447 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:42:19.484 -07 000000569 INF: FPGA: Xmit ZDACW 30158\n [Z Motor]
17-03-18 05:42:19.484 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:42:19.494 -07 000000569 INF: FPGA: 'ZDACW 30158' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:19.494 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:19.504 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:19.514 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:19.514 -07 000000455 INF: FPGA: Recv ZDACR 30158
17-03-18 05:42:19.524 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:19.524 -07 000000569 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:42:19.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:42:19.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:42:19.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:19.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:42:19.554 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:42:19.554 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:19.554 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:19.554 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:42:19.554 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:42:19.564 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:42:19.694 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:19.694 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:42:19.874 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:42:19.874 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:42:19.924 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:19.934 -07 000000625 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:42:19.934 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:19.934 -07 000000447 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:19.934 -07 000000447 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:42:19.934 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 05:42:20.884 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:20.884 -07 000000569 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:42:20.894 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.894 -07 000000447 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:20.924 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:20.924 -07 000000447 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:20.924 -07 000000447 INF: Y Motor: Moved to 64.0562 after 1456 ms (table move)
17-03-18 05:42:20.924 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138054 mm (DAC = 30158)
17-03-18 05:42:20.924 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.934 -07 000000444 INF: FPGA: Recv ZSGSRD 30791
17-03-18 05:42:20.944 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:20.944 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.944 -07 000000474 INF: FPGA: Recv ZSGSRD 30779
17-03-18 05:42:20.954 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30774
17-03-18 05:42:20.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.964 -07 000000629 INF: FPGA: Recv ZSGSRD 30774
17-03-18 05:42:20.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.974 -07 000000611 INF: FPGA: Recv ZSGSRD 30780
17-03-18 05:42:20.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.984 -07 000000012 INF: FPGA: Recv ZSGSRD 30779
17-03-18 05:42:20.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:20.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:20.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30782
17-03-18 05:42:21.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.004 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:21.004 -07 000000501 INF: FPGA: Recv ZSGSRD 30782
17-03-18 05:42:21.014 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.014 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:21.014 -07 000000625 INF: FPGA: Recv ZSGSRD 30789
17-03-18 05:42:21.024 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.024 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:21.024 -07 000000474 INF: FPGA: Recv ZSGSRD 30778
17-03-18 05:42:21.034 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.034 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:21.034 -07 000000455 INF: FPGA: Recv ZPIEZORD 26593
17-03-18 05:42:21.044 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V.
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30781 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30791 (-137.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30781, posNoise = 10, negNoise = 7
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: After move to -0.138054, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: Settle wait time = 1459 ms, measure time = 112 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:42:21.044 -07 000000579 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:21.084 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:42:21.084 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:21.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:21.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:21.094 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:21.094 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:21.094 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:21.094 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:21.094 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:21.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:21.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:21.104 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:21.114 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:42:21.114 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:42:21.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:21.164 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:21.464 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:21.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:21.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:21.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:21.504 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:21.504 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:21.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:42:21.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:42:21.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:21.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:21.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:42:21.604 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:21.604 -07 000000590 INF: Autofocus start
17-03-18 05:42:21.604 -07 000000590 INF: MeasureProfile start
17-03-18 05:42:21.604 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:21.614 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:21.614 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:21.614 -07 000000590 INF: MeasureProfile done
17-03-18 05:42:21.614 -07 000000590 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 05:42:21.614 -07 000000590 INF: Autofocus finished
17-03-18 05:42:21.794 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:21.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:21.814 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:21.814 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:21.814 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.138067025946679. ----------
17-03-18 05:42:21.814 -07 000000610 INF: Cycle	140	Tile	6	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:21.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True)
17-03-18 05:42:21.824 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.138067 mm, distance = 7.06 um
17-03-18 05:42:21.824 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor]
17-03-18 05:42:21.824 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:42:21.834 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:21.834 -07 000000455 INF: FPGA: Recv ZDACR 28619
17-03-18 05:42:21.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:21.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:21.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:21.994 -07 000000455 INF: FPGA: Recv ZSGSRD 29684
17-03-18 05:42:22.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.004 -07 000000579 INF: FPGA: Recv ZSGSRD 29684
17-03-18 05:42:22.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.014 -07 000000579 INF: FPGA: Recv ZSGSRD 29688
17-03-18 05:42:22.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.024 -07 000000437 INF: FPGA: Recv ZSGSRD 29687
17-03-18 05:42:22.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29683
17-03-18 05:42:22.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.044 -07 000000437 INF: FPGA: Recv ZSGSRD 29688
17-03-18 05:42:22.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29685
17-03-18 05:42:22.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.064 -07 000000579 INF: FPGA: Recv ZSGSRD 29683
17-03-18 05:42:22.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29681
17-03-18 05:42:22.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:22.084 -07 000000437 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:42:22.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:22.094 -07 000000455 INF: FPGA: Recv ZPIEZORD 25190
17-03-18 05:42:22.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:22.104 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.9 V.
17-03-18 05:42:22.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29684 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29679 (-130.2 uncal um), Max = 29688 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:22.104 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 4, negNoise = 5
17-03-18 05:42:22.104 -07 000000610 INF: Z Motor: After move to -0.131009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:22.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:42:22.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:22.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:22.104 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:22.104 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:22.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:22.104 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:22.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:22.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:22.104 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:22.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:22.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:22.104 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:22.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:22.114 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:22.114 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:22.114 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:22.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:22.114 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:22.124 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:42:22.124 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:42:22.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28796 150\n [Camera]
17-03-18 05:42:22.324 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:22.524 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.977204,
17-03-18 05:42:22.764 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:22.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:22.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:22.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:22.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:22.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:22.774 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:22.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:22.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:22.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:22.964 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 828
17-03-18 05:42:23.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:23.164 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:42:23.164 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:42:23.164 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:23.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:42:23.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:42:23.174 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:23.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:23.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:42:23.174 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:23.184 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:42:23.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:23.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:23.324 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:23.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:23.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:23.324 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:23.334 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:23.334 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:42:23.334 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:23.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:42:23.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:23.514 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:23.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28796 150' command took 2 ms to send, 1386 ms to get response, and 1390 ms overall
17-03-18 05:42:23.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:23.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131019665227167. ------
17-03-18 05:42:23.524 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:23.524 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13753 mm
17-03-18 05:42:23.524 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:23.524 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:42:23.524 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30043, sync = True, waitForSettling = False)
17-03-18 05:42:23.524 -07 000000382 INF: Z Motor: Moving to -0.137528 mm, started at -0.131020 mm, distance = -6.51 um
17-03-18 05:42:23.524 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:23.524 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:42:23.534 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:23.654 -07 000000382 INF: FPGA: Xmit ZDACW 30043\n [Z Motor]
17-03-18 05:42:23.654 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:42:23.664 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:23.664 -07 000000382 INF: FPGA: 'ZDACW 30043' command took 122 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 05:42:23.664 -07 000000590 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:42:23.674 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:23.674 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-18 05:42:23.674 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:23.674 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:23.674 -07 000000424 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:42:23.684 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:23.684 -07 000000629 INF: FPGA: Recv ZDACR 30043
17-03-18 05:42:23.694 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:23.694 -07 000000382 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-18 05:42:23.694 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:23.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:42:23.724 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:42:23.724 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:23.724 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:42:23.724 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:42:23.724 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:23.724 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:23.724 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:23.724 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:42:23.734 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:42:23.874 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:23.874 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:42:24.064 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:42:24.064 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:42:24.124 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:24.124 -07 000000579 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:42:24.134 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:24.134 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:24.134 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:42:24.134 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.836 mm, average velocity = 2.134 mm/sec
17-03-18 05:42:25.084 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:25.084 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:42:25.094 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.094 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:25.124 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:25.124 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:25.124 -07 000000424 INF: Y Motor: Moved to 64.8779 after 1597 ms (table move)
17-03-18 05:42:25.124 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137528 mm (DAC = 30043)
17-03-18 05:42:25.124 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30702
17-03-18 05:42:25.134 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:25.134 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.134 -07 000000424 INF: FPGA: Recv ZSGSRD 30696
17-03-18 05:42:25.144 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.144 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.144 -07 000000455 INF: FPGA: Recv ZSGSRD 30696
17-03-18 05:42:25.154 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.154 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.154 -07 000000424 INF: FPGA: Recv ZSGSRD 30700
17-03-18 05:42:25.164 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.164 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.164 -07 000000455 INF: FPGA: Recv ZSGSRD 30693
17-03-18 05:42:25.174 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.174 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.174 -07 000000455 INF: FPGA: Recv ZSGSRD 30699
17-03-18 05:42:25.184 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.184 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30697
17-03-18 05:42:25.194 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.194 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30698
17-03-18 05:42:25.204 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.204 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.204 -07 000000455 INF: FPGA: Recv ZSGSRD 30703
17-03-18 05:42:25.214 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.214 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:25.214 -07 000000424 INF: FPGA: Recv ZSGSRD 30701
17-03-18 05:42:25.224 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.224 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:25.224 -07 000000474 INF: FPGA: Recv ZPIEZORD 26530
17-03-18 05:42:25.234 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.2 V.
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30698 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30698 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30693 (-136.7 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30698, posNoise = 5, negNoise = 5
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: After move to -0.137528, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: Settle wait time = 1600 ms, measure time = 105 ms (allowed 150 ms), total time = 1705 ms
17-03-18 05:42:25.234 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:25.284 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1758 ms
17-03-18 05:42:25.284 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:25.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:25.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:25.284 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:25.284 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:25.284 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:25.284 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:25.284 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:25.284 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:25.294 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:25.294 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:25.304 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:42:25.304 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:42:25.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:25.344 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:42:25.654 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:42:25.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:42:25.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:25.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:25.684 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:25.684 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:25.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:42:25.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:42:25.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:25.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:25.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:42:26.314 -07 000000585 INF: Autofocus start
17-03-18 05:42:26.314 -07 000000585 INF: MeasureProfile start
17-03-18 05:42:26.324 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:26.324 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:26.334 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:42:26.334 -07 000000585 INF: MeasureProfile done
17-03-18 05:42:26.334 -07 000000585 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:42:26.334 -07 000000585 INF: Autofocus finished
17-03-18 05:42:26.344 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:26.544 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:26.544 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:42:26.544 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137533816338913. ----------
17-03-18 05:42:26.544 -07 000000610 INF: Cycle	140	Tile	7	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:26.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28538, sync = True, waitForSettling = True)
17-03-18 05:42:26.554 -07 000000610 INF: Z Motor: Moving to -0.130639 mm, started at -0.137534 mm, distance = 6.90 um
17-03-18 05:42:26.554 -07 000000610 INF: FPGA: Xmit ZDACW 28538\n [Z Motor]
17-03-18 05:42:26.554 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:42:26.564 -07 000000610 INF: FPGA: 'ZDACW 28538' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:26.564 -07 000000424 INF: FPGA: Recv ZDACR 28538
17-03-18 05:42:26.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:26.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:42:26.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:26.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.734 -07 000000424 INF: FPGA: Recv ZSGSRD 29627
17-03-18 05:42:26.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.744 -07 000000424 INF: FPGA: Recv ZSGSRD 29624
17-03-18 05:42:26.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.754 -07 000000424 INF: FPGA: Recv ZSGSRD 29627
17-03-18 05:42:26.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.764 -07 000000012 INF: FPGA: Recv ZSGSRD 29632
17-03-18 05:42:26.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.774 -07 000000012 INF: FPGA: Recv ZSGSRD 29628
17-03-18 05:42:26.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.784 -07 000000474 INF: FPGA: Recv ZSGSRD 29630
17-03-18 05:42:26.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:26.794 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:26.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:26.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29624
17-03-18 05:42:26.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:26.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.804 -07 000000455 INF: FPGA: Recv ZSGSRD 29622
17-03-18 05:42:26.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:26.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29628
17-03-18 05:42:26.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:26.824 -07 000000455 INF: FPGA: Recv ZPIEZORD 25140
17-03-18 05:42:26.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:26.834 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.8 V.
17-03-18 05:42:26.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29627 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29632 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:26.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 5, negNoise = 5
17-03-18 05:42:26.834 -07 000000610 INF: Z Motor: After move to -0.130639, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:26.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:42:26.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:26.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:26.834 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:26.834 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:26.834 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:26.834 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:26.834 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:26.834 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:26.834 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:26.834 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:26.834 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:26.834 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:26.834 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:26.834 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:26.834 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:26.844 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:26.844 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:26.844 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:26.844 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:42:26.844 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:26.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28714 150\n [Camera]
17-03-18 05:42:27.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:27.494 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 636
17-03-18 05:42:27.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 636
17-03-18 05:42:27.494 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:27.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 636
17-03-18 05:42:27.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 636
17-03-18 05:42:27.504 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:27.504 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:27.504 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:27.504 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:27.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:27.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28714 828
17-03-18 05:42:27.834 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:27.884 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.973092,
17-03-18 05:42:27.894 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:42:27.894 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:42:27.894 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:27.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:42:27.894 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:42:27.894 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:27.894 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:27.894 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:42:27.904 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:27.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:42:28.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1192
17-03-18 05:42:28.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1192
17-03-18 05:42:28.054 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:28.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1192
17-03-18 05:42:28.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1192
17-03-18 05:42:28.054 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:28.054 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:28.054 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:42:28.054 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:28.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:42:28.244 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:28.244 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:28.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28714 150' command took 2 ms to send, 1383 ms to get response, and 1391 ms overall
17-03-18 05:42:28.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:28.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130653485135087. ------
17-03-18 05:42:28.244 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:28.244 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13735 mm
17-03-18 05:42:28.244 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:28.254 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:42:28.254 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:42:28.254 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:28.254 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:42:28.254 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:28.254 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30004, sync = True, waitForSettling = False)
17-03-18 05:42:28.254 -07 000000629 INF: Z Motor: Moving to -0.137350 mm, started at -0.130653 mm, distance = -6.70 um
17-03-18 05:42:28.254 -07 000000585 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:42:28.264 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:28.264 -07 000000424 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:28.264 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:28.264 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:28.264 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:42:28.274 -07 000000629 INF: FPGA: Xmit ZDACW 30004\n [Z Motor]
17-03-18 05:42:28.274 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:42:28.284 -07 000000629 INF: FPGA: 'ZDACW 30004' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:42:28.284 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:28.294 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:28.294 -07 000000585 INF: FPGA: Recv ZDACR 30004
17-03-18 05:42:28.304 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:28.304 -07 000000629 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:42:28.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:42:28.444 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:42:28.444 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:28.444 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:28.444 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:42:28.444 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:42:28.444 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:28.454 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:28.454 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:42:28.454 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:42:28.464 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:28.464 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 05:42:28.654 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:42:28.654 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:42:28.704 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:28.714 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:42:28.724 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:28.724 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:28.724 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:42:28.724 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-18 05:42:29.674 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:29.674 -07 000000455 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:42:29.684 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:29.684 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:29.714 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:29.724 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:29.724 -07 000000424 INF: Y Motor: Moved to 65.7134 after 1467 ms (table move)
17-03-18 05:42:29.724 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137350 mm (DAC = 30004)
17-03-18 05:42:29.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.724 -07 000000585 INF: FPGA: Recv ZSGSRD 30666
17-03-18 05:42:29.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:29.734 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.734 -07 000000585 INF: FPGA: Recv ZSGSRD 30667
17-03-18 05:42:29.744 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.744 -07 000000585 INF: FPGA: Recv ZSGSRD 30664
17-03-18 05:42:29.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.754 -07 000000424 INF: FPGA: Recv ZSGSRD 30667
17-03-18 05:42:29.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.764 -07 000000424 INF: FPGA: Recv ZSGSRD 30669
17-03-18 05:42:29.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.774 -07 000000487 INF: FPGA: Recv ZSGSRD 30674
17-03-18 05:42:29.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.784 -07 000000487 INF: FPGA: Recv ZSGSRD 30673
17-03-18 05:42:29.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.794 -07 000000487 INF: FPGA: Recv ZSGSRD 30673
17-03-18 05:42:29.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.804 -07 000000487 INF: FPGA: Recv ZSGSRD 30668
17-03-18 05:42:29.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:29.814 -07 000000487 INF: FPGA: Recv ZSGSRD 30667
17-03-18 05:42:29.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.824 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:29.824 -07 000000487 INF: FPGA: Recv ZPIEZORD 26510
17-03-18 05:42:29.834 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.2 V.
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30669 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30668 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30664 (-136.5 uncal um), Max = 30674 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30669, posNoise = 5, negNoise = 5
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: After move to -0.137350, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: Settle wait time = 1470 ms, measure time = 107 ms (allowed 150 ms), total time = 1577 ms
17-03-18 05:42:29.834 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:29.884 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 05:42:29.884 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:29.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:29.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:29.884 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:29.884 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:29.884 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:29.884 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:29.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:29.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:29.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:29.894 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:29.904 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:42:29.904 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:42:29.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:29.944 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:30.244 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:30.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:30.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:30.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:42:30.284 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:30.284 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:30.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:42:30.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:30.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:30.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:30.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:30.394 -07 000000487 INF: Autofocus start
17-03-18 05:42:30.394 -07 000000487 INF: MeasureProfile start
17-03-18 05:42:30.394 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:30.394 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:30.404 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:30.404 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:30.404 -07 000000487 INF: MeasureProfile done
17-03-18 05:42:30.404 -07 000000487 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:42:30.404 -07 000000487 INF: Autofocus finished
17-03-18 05:42:30.604 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:30.604 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:30.604 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137347514186802. ----------
17-03-18 05:42:30.604 -07 000000610 INF: Cycle	140	Tile	8	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:30.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28512, sync = True, waitForSettling = True)
17-03-18 05:42:30.614 -07 000000610 INF: Z Motor: Moving to -0.130520 mm, started at -0.137348 mm, distance = 6.83 um
17-03-18 05:42:30.614 -07 000000610 INF: FPGA: Xmit ZDACW 28512\n [Z Motor]
17-03-18 05:42:30.614 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:42:30.624 -07 000000610 INF: FPGA: 'ZDACW 28512' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:30.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:30.624 -07 000000474 INF: FPGA: Recv ZDACR 28512
17-03-18 05:42:30.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:30.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.784 -07 000000487 INF: FPGA: Recv ZSGSRD 29613
17-03-18 05:42:30.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:30.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.794 -07 000000474 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:42:30.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.804 -07 000000590 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:42:30.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.814 -07 000000474 INF: FPGA: Recv ZSGSRD 29606
17-03-18 05:42:30.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.824 -07 000000487 INF: FPGA: Recv ZSGSRD 29604
17-03-18 05:42:30.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.834 -07 000000579 INF: FPGA: Recv ZSGSRD 29613
17-03-18 05:42:30.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.844 -07 000000487 INF: FPGA: Recv ZSGSRD 29601
17-03-18 05:42:30.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.854 -07 000000629 INF: FPGA: Recv ZSGSRD 29612
17-03-18 05:42:30.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29609
17-03-18 05:42:30.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:30.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:42:30.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:30.884 -07 000000629 INF: FPGA: Recv ZPIEZORD 25086
17-03-18 05:42:30.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:30.894 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 05:42:30.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29606 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29601 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:30.894 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 6, negNoise = 6
17-03-18 05:42:30.894 -07 000000610 INF: Z Motor: After move to -0.130520, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:30.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:42:30.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:30.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:30.894 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:30.894 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:30.894 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:30.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:30.894 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:30.894 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:30.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:30.894 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:30.894 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:30.894 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:30.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:30.904 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:30.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:30.904 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:30.914 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:42:30.914 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:42:30.914 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:42:30.914 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:42:30.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28688 150\n [Camera]
17-03-18 05:42:31.114 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:31.564 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:31.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:31.564 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:31.564 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:31.564 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:42:31.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:31.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:31.564 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:31.564 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:31.564 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:42:31.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28688 828
17-03-18 05:42:31.794 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:31.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:31.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:31.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:31.964 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:31.964 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:31.964 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:42:31.964 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:31.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:42:31.964 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:42:31.964 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:31.964 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:31.974 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:42:32.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:32.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:32.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:32.114 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:32.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:42:32.124 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:32.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:32.124 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:32.124 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:32.124 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:42:32.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:32.314 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:32.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28688 150' command took 2 ms to send, 1379 ms to get response, and 1391 ms overall
17-03-18 05:42:32.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:32.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130525000892252. ------
17-03-18 05:42:32.434 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13685 mm
17-03-18 05:42:32.434 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:32.434 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:32.434 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:42:32.434 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:42:32.434 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29895, sync = True, waitForSettling = False)
17-03-18 05:42:32.434 -07 000000474 INF: Z Motor: Moving to -0.136851 mm, started at -0.130525 mm, distance = -6.33 um
17-03-18 05:42:32.444 -07 000000474 INF: FPGA: Xmit ZDACW 29895\n [Z Motor]
17-03-18 05:42:32.454 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:32.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:42:32.504 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:42:32.504 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:32.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:42:32.504 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:42:32.504 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:32.504 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:32.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:42:32.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:42:32.514 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:42:32.524 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:32.524 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:42:32.524 -07 000000579 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:42:32.524 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 66 ms to get response, and 93 ms overall
17-03-18 05:42:32.524 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:32.524 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:32.524 -07 000000424 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:42:32.524 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:32.524 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 86 ms to get response, and 95 ms overall
17-03-18 05:42:32.524 -07 000000474 INF: FPGA: 'ZDACW 29895' command took 0 ms to send, 76 ms to get response, and 92 ms overall
17-03-18 05:42:32.534 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:32.544 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:32.544 -07 000000579 INF: FPGA: Recv ZDACR 29895
17-03-18 05:42:32.554 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:42:32.554 -07 000000474 INF: Z Motor: MoveAbsStepped took 116 ms (did NOT wait for settling yet))
17-03-18 05:42:32.734 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:32.734 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 05:42:32.904 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:42:32.904 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 05:42:32.954 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:32.964 -07 000000474 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:42:32.964 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:32.964 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:32.964 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:42:32.964 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 05:42:33.244 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.971733,
17-03-18 05:42:33.914 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:33.914 -07 000000590 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:42:33.924 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:33.924 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:33.954 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:33.954 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:33.954 -07 000000424 INF: Y Motor: Moved to 66.5386 after 1519 ms (table move)
17-03-18 05:42:33.954 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136851 mm (DAC = 29895)
17-03-18 05:42:33.954 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:33.954 -07 000000590 INF: FPGA: Recv ZSGSRD 30588
17-03-18 05:42:33.964 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:33.964 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:33.964 -07 000000424 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:42:33.974 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:33.974 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:33.974 -07 000000590 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:42:33.984 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:33.984 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:33.984 -07 000000590 INF: FPGA: Recv ZSGSRD 30591
17-03-18 05:42:33.994 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:33.994 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:33.994 -07 000000579 INF: FPGA: Recv ZSGSRD 30591
17-03-18 05:42:34.004 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:34.004 -07 000000590 INF: FPGA: Recv ZSGSRD 30594
17-03-18 05:42:34.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.014 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:34.014 -07 000000424 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:42:34.024 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:34.024 -07 000000474 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:42:34.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:34.034 -07 000000625 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:42:34.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:34.044 -07 000000474 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:42:34.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.054 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:34.054 -07 000000424 INF: FPGA: Recv ZPIEZORD 26446
17-03-18 05:42:34.064 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.1 V.
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30591 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30590 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30584 (-136.0 uncal um), Max = 30602 (-136.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30591, posNoise = 11, negNoise = 7
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: After move to -0.136851, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: Settle wait time = 1522 ms, measure time = 104 ms (allowed 150 ms), total time = 1626 ms
17-03-18 05:42:34.064 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:34.114 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1679 ms
17-03-18 05:42:34.114 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:34.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:34.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:34.114 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:34.114 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:34.114 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:34.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:34.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:34.114 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:34.124 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:34.124 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:34.124 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:34.124 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:42:34.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:34.174 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:34.474 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:34.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:34.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:34.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:34.514 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:34.514 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:34.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:42:34.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:42:34.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:34.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:34.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:42:34.614 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:34.614 -07 000000590 INF: Autofocus start
17-03-18 05:42:34.614 -07 000000590 INF: MeasureProfile start
17-03-18 05:42:34.614 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:34.624 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:34.624 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:34.624 -07 000000590 INF: MeasureProfile done
17-03-18 05:42:34.624 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:42:34.624 -07 000000590 INF: Autofocus finished
17-03-18 05:42:34.824 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:34.824 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:34.824 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136846425639744. ----------
17-03-18 05:42:34.824 -07 000000610 INF: Cycle	140	Tile	9	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:34.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28402, sync = True, waitForSettling = True)
17-03-18 05:42:34.834 -07 000000610 INF: Z Motor: Moving to -0.130016 mm, started at -0.136846 mm, distance = 6.83 um
17-03-18 05:42:34.834 -07 000000610 INF: FPGA: Xmit ZDACW 28402\n [Z Motor]
17-03-18 05:42:34.834 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:42:34.844 -07 000000610 INF: FPGA: 'ZDACW 28402' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:34.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:34.844 -07 000000625 INF: FPGA: Recv ZDACR 28402
17-03-18 05:42:34.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:34.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:35.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.004 -07 000000591 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:42:35.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:35.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.014 -07 000000625 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:42:35.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.024 -07 000000591 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:42:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.034 -07 000000625 INF: FPGA: Recv ZSGSRD 29527
17-03-18 05:42:35.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.044 -07 000000591 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:42:35.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.054 -07 000000625 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:42:35.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29523
17-03-18 05:42:35.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.074 -07 000000625 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:42:35.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.084 -07 000000625 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:42:35.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:35.094 -07 000000012 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:42:35.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:35.104 -07 000000625 INF: FPGA: Recv ZPIEZORD 25036
17-03-18 05:42:35.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:35.114 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 05:42:35.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29527 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29522 (-129.2 uncal um), Max = 29531 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:35.114 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29527, posNoise = 4, negNoise = 5
17-03-18 05:42:35.114 -07 000000610 INF: Z Motor: After move to -0.130016, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:35.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:42:35.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:35.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:35.114 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:35.114 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:35.114 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:35.114 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:35.114 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:35.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:35.114 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:35.114 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:35.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:42:35.114 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:35.124 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:42:35.124 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:35.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:35.124 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:35.134 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:42:35.134 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:42:35.134 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:42:35.134 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:42:35.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28579 150\n [Camera]
17-03-18 05:42:35.344 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:35.784 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:35.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:35.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:35.784 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:35.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:35.784 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:35.784 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:35.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:35.794 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:35.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:35.974 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28579 828
17-03-18 05:42:36.124 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:36.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:42:36.174 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:42:36.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:36.174 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:42:36.174 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:42:36.174 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:36.174 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:36.174 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:36.174 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:42:36.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:42:36.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:36.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:36.344 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:36.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:36.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:36.344 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:36.344 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:36.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:42:36.354 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:36.354 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:42:36.534 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:36.534 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:36.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28579 150' command took 2 ms to send, 1381 ms to get response, and 1391 ms overall
17-03-18 05:42:36.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:36.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130011063920911. ------
17-03-18 05:42:36.534 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:36.534 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13679 mm
17-03-18 05:42:36.534 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:36.534 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29881, sync = True, waitForSettling = False)
17-03-18 05:42:36.534 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:42:36.534 -07 000000590 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:42:36.534 -07 000000625 INF: Z Motor: Moving to -0.136786 mm, started at -0.130011 mm, distance = -6.78 um
17-03-18 05:42:36.534 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:36.544 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:36.544 -07 000000625 INF: FPGA: Xmit ZDACW 29881\n [Z Motor]
17-03-18 05:42:36.544 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:42:36.554 -07 000000625 INF: FPGA: 'ZDACW 29881' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:36.554 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:36.554 -07 000000444 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:42:36.564 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:42:36.564 -07 000000590 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:36.564 -07 000000590 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:36.564 -07 000000590 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:42:36.564 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:36.574 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:36.574 -07 000000606 INF: FPGA: Recv ZDACR 29881
17-03-18 05:42:36.584 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:36.584 -07 000000625 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:42:36.704 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:36.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:42:36.744 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:42:36.744 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:36.744 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:42:36.744 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:42:36.744 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:36.744 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:36.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:42:36.754 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:36.754 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:42:36.764 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:36.764 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:42:36.794 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:36.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:37.074 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:42:37.074 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 120 ms to send, 368 ms to get response, and 518 ms overall
17-03-18 05:42:37.124 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:37.134 -07 000000611 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:42:37.134 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:42:37.134 -07 000000590 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:37.134 -07 000000590 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:42:37.134 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 518 ms, distance = 0.844 mm, average velocity = 1.629 mm/sec
17-03-18 05:42:38.084 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:38.084 -07 000000611 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:42:38.094 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.094 -07 000000590 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:38.124 -07 000000590 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:38.124 -07 000000590 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:38.124 -07 000000590 INF: Y Motor: Moved to 67.3711 after 1583 ms (table move)
17-03-18 05:42:38.124 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136786 mm (DAC = 29881)
17-03-18 05:42:38.124 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.124 -07 000000424 INF: FPGA: Recv ZSGSRD 30582
17-03-18 05:42:38.134 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:38.134 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.134 -07 000000590 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:42:38.144 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.144 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.144 -07 000000424 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:42:38.154 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.154 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.154 -07 000000611 INF: FPGA: Recv ZSGSRD 30575
17-03-18 05:42:38.164 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.164 -07 000000424 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:42:38.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.174 -07 000000611 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:42:38.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.184 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.184 -07 000000611 INF: FPGA: Recv ZSGSRD 30585
17-03-18 05:42:38.194 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.194 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30581
17-03-18 05:42:38.204 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.204 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30586
17-03-18 05:42:38.214 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.214 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:38.214 -07 000000611 INF: FPGA: Recv ZSGSRD 30585
17-03-18 05:42:38.224 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.224 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:38.224 -07 000000424 INF: FPGA: Recv ZPIEZORD 26422
17-03-18 05:42:38.234 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.2 V.
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30575 (-135.9 uncal um), Max = 30587 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 4, negNoise = 8
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: After move to -0.136786, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: Settle wait time = 1587 ms, measure time = 104 ms (allowed 150 ms), total time = 1691 ms
17-03-18 05:42:38.234 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:38.284 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 05:42:38.284 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:38.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:38.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:38.284 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:38.284 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:38.284 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:38.284 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:38.294 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:38.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:38.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:38.294 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:38.294 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:38.304 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:42:38.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:38.344 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:38.604 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.990831,
17-03-18 05:42:38.644 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:38.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:38.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:38.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:38.684 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:38.684 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:38.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:42:38.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:38.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:38.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:38.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:42:38.784 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:38.784 -07 000000424 INF: Autofocus start
17-03-18 05:42:38.784 -07 000000424 INF: MeasureProfile start
17-03-18 05:42:38.784 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:38.794 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:38.794 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:38.794 -07 000000424 INF: MeasureProfile done
17-03-18 05:42:38.794 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:42:38.794 -07 000000424 INF: Autofocus finished
17-03-18 05:42:38.994 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:38.994 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:38.994 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13679503194261. ----------
17-03-18 05:42:38.994 -07 000000610 INF: Cycle	140	Tile	10	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:39.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-18 05:42:39.004 -07 000000610 INF: Z Motor: Moving to -0.130030 mm, started at -0.136795 mm, distance = 6.77 um
17-03-18 05:42:39.004 -07 000000610 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-18 05:42:39.004 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:42:39.014 -07 000000610 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:42:39.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:39.014 -07 000000629 INF: FPGA: Recv ZDACR 28405
17-03-18 05:42:39.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:39.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.174 -07 000000585 INF: FPGA: Recv ZSGSRD 29528
17-03-18 05:42:39.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:39.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29536
17-03-18 05:42:39.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.194 -07 000000585 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:42:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.204 -07 000000629 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:42:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.214 -07 000000585 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:42:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.224 -07 000000629 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:42:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.234 -07 000000585 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:42:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.244 -07 000000424 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:42:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.254 -07 000000585 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:42:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:39.264 -07 000000424 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:42:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:39.274 -07 000000579 INF: FPGA: Recv ZPIEZORD 25055
17-03-18 05:42:39.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:39.284 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.8 V.
17-03-18 05:42:39.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29532 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29532 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29528 (-129.2 uncal um), Max = 29536 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:42:39.284 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29532, posNoise = 4, negNoise = 4
17-03-18 05:42:39.284 -07 000000610 INF: Z Motor: After move to -0.130030, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:39.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:42:39.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:39.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:39.284 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:39.284 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:39.284 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:39.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:39.294 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:39.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:39.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:39.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:39.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:39.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:39.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:39.294 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:39.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:39.294 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:39.304 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:42:39.304 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:42:39.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:42:39.304 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:42:39.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28582 150\n [Camera]
17-03-18 05:42:39.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:39.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:39.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:39.954 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:39.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:39.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:39.954 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:39.954 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:39.954 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:39.964 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:39.964 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:40.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28582 828
17-03-18 05:42:40.294 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:40.354 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:42:40.354 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:42:40.354 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:40.354 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:40.354 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:42:40.354 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:42:40.354 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:42:40.354 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:40.364 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:40.364 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:42:40.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:40.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:40.504 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:40.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:40.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:40.514 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:40.514 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:40.514 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:42:40.514 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:40.514 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:42:40.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1385
17-03-18 05:42:40.704 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:40.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28582 150' command took 2 ms to send, 1380 ms to get response, and 1392 ms overall
17-03-18 05:42:40.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:40.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.13004318498162. ------
17-03-18 05:42:40.704 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:40.704 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13642 mm
17-03-18 05:42:40.704 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:40.704 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:40.704 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29801, sync = True, waitForSettling = False)
17-03-18 05:42:40.714 -07 000000585 INF: Z Motor: Moving to -0.136420 mm, started at -0.130043 mm, distance = -6.38 um
17-03-18 05:42:40.714 -07 000000585 INF: FPGA: Xmit ZDACW 29801\n [Z Motor]
17-03-18 05:42:40.714 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:42:40.714 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:42:40.714 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:40.714 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:42:40.724 -07 000000585 INF: FPGA: 'ZDACW 29801' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:40.724 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:40.734 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:40.734 -07 000000579 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:42:40.744 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:40.744 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:40.744 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:40.744 -07 000000487 INF: FPGA: Recv ZDACR 29801
17-03-18 05:42:40.744 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:40.744 -07 000000501 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:42:40.754 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:40.754 -07 000000585 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:42:40.754 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:40.914 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:40.914 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:40.914 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:40.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:42:40.914 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:42:40.914 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:40.914 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:40.914 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:42:40.914 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:40.924 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:40.924 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:42:40.924 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:42:41.124 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 05:42:41.124 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 05:42:41.184 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:41.814 -07 000000474 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:42:41.814 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:41.814 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 621 ms to get response, and 631 ms overall
17-03-18 05:42:41.814 -07 000000501 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:41.814 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:42:41.814 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.842 mm, average velocity = 2.191 mm/sec
17-03-18 05:42:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:42.764 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:42.764 -07 000000487 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:42:42.774 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.774 -07 000000501 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:42.804 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:42.804 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:42.804 -07 000000501 INF: Y Motor: Moved to 68.2041 after 2093 ms (table move)
17-03-18 05:42:42.804 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136420 mm (DAC = 29801)
17-03-18 05:42:42.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.814 -07 000000424 INF: FPGA: Recv ZSGSRD 30522
17-03-18 05:42:42.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:42:42.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.814 -07 000000501 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:42:42.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.824 -07 000000591 INF: FPGA: Recv ZSGSRD 30525
17-03-18 05:42:42.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.834 -07 000000487 INF: FPGA: Recv ZSGSRD 30522
17-03-18 05:42:42.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.844 -07 000000424 INF: FPGA: Recv ZSGSRD 30524
17-03-18 05:42:42.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.854 -07 000000501 INF: FPGA: Recv ZSGSRD 30521
17-03-18 05:42:42.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.864 -07 000000424 INF: FPGA: Recv ZSGSRD 30532
17-03-18 05:42:42.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.874 -07 000000474 INF: FPGA: Recv ZSGSRD 30523
17-03-18 05:42:42.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.884 -07 000000606 INF: FPGA: Recv ZSGSRD 30522
17-03-18 05:42:42.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.894 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:42.894 -07 000000501 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:42:42.904 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.904 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:42.904 -07 000000424 INF: FPGA: Recv ZPIEZORD 26325
17-03-18 05:42:42.914 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V.
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30524 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30521 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30524, posNoise = 8, negNoise = 3
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: After move to -0.136420, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: Settle wait time = 2097 ms, measure time = 103 ms (allowed 150 ms), total time = 2200 ms
17-03-18 05:42:42.914 -07 000000629 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:42.964 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2254 ms
17-03-18 05:42:42.964 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:42.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:42.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:42.964 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:42.964 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:42.964 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:42.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:42.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:42.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:42.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:42.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:42.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:42.974 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:42:42.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:43.024 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:43.324 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:43.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:43.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:43.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:42:43.364 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:43.364 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:43.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:42:43.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:42:43.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:43.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:43.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:42:43.464 -07 000000591 INF: Autofocus start
17-03-18 05:42:43.464 -07 000000591 INF: MeasureProfile start
17-03-18 05:42:43.464 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:43.464 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:43.474 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:43.474 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:43.474 -07 000000591 INF: MeasureProfile done
17-03-18 05:42:43.474 -07 000000591 INF: X=-53  Z correction [um]=-0.2613974
17-03-18 05:42:43.474 -07 000000591 INF: Autofocus finished
17-03-18 05:42:43.674 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:43.674 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:43.674 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136416003426246. ----------
17-03-18 05:42:43.674 -07 000000610 INF: Cycle	140	Tile	11	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:43.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28256, sync = True, waitForSettling = True)
17-03-18 05:42:43.684 -07 000000610 INF: Z Motor: Moving to -0.129348 mm, started at -0.136416 mm, distance = 7.07 um
17-03-18 05:42:43.684 -07 000000610 INF: FPGA: Xmit ZDACW 28256\n [Z Motor]
17-03-18 05:42:43.684 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:42:43.694 -07 000000610 INF: FPGA: 'ZDACW 28256' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:43.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:43.694 -07 000000618 INF: FPGA: Recv ZDACR 28256
17-03-18 05:42:43.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:43.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29429
17-03-18 05:42:43.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.864 -07 000000424 INF: FPGA: Recv ZSGSRD 29429
17-03-18 05:42:43.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.874 -07 000000629 INF: FPGA: Recv ZSGSRD 29430
17-03-18 05:42:43.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.884 -07 000000487 INF: FPGA: Recv ZSGSRD 29423
17-03-18 05:42:43.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.894 -07 000000591 INF: FPGA: Recv ZSGSRD 29422
17-03-18 05:42:43.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29423
17-03-18 05:42:43.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.914 -07 000000618 INF: FPGA: Recv ZSGSRD 29429
17-03-18 05:42:43.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29425
17-03-18 05:42:43.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:43.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.934 -07 000000591 INF: FPGA: Recv ZSGSRD 29423
17-03-18 05:42:43.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:43.944 -07 000000591 INF: FPGA: Recv ZSGSRD 29424
17-03-18 05:42:43.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:43.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:43.964 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.004458,
17-03-18 05:42:43.964 -07 000000501 INF: FPGA: Recv ZPIEZORD 24918
17-03-18 05:42:43.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:42:43.974 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.9 V.
17-03-18 05:42:43.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29426 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29424 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29422 (-128.6 uncal um), Max = 29430 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:42:43.974 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29426, posNoise = 4, negNoise = 4
17-03-18 05:42:43.974 -07 000000610 INF: Z Motor: After move to -0.129348, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:43.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:42:43.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:43.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:43.984 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:43.984 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:43.984 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:43.984 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:43.984 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:43.984 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:43.984 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:43.994 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:43.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:43.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:43.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:43.994 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:43.994 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:42:43.994 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:44.014 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:42:44.014 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:42:44.014 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:42:44.014 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 05:42:44.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28433 150\n [Camera]
17-03-18 05:42:44.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:44.664 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:44.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:44.664 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:44.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:44.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:42:44.664 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:44.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:44.664 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:44.664 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:44.664 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:42:44.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28433 831
17-03-18 05:42:45.004 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:45.064 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:42:45.064 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:42:45.064 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:45.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:42:45.064 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:42:45.064 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:45.064 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:45.064 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:42:45.064 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:45.074 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:42:45.214 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:45.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:45.214 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:45.214 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:45.214 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:42:45.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:45.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:45.224 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:45.224 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:45.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:42:45.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:45.404 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:45.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28433 150' command took 2 ms to send, 1378 ms to get response, and 1391 ms overall
17-03-18 05:42:45.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:45.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129362218494593. ------
17-03-18 05:42:45.414 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13604 mm
17-03-18 05:42:45.414 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:45.414 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:45.414 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:42:45.414 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:42:45.414 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:45.414 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29718, sync = True, waitForSettling = False)
17-03-18 05:42:45.414 -07 000000474 INF: Z Motor: Moving to -0.136040 mm, started at -0.129362 mm, distance = -6.68 um
17-03-18 05:42:45.424 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:45.424 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:45.424 -07 000000629 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:42:45.434 -07 000000474 INF: FPGA: Xmit ZDACW 29718\n [Z Motor]
17-03-18 05:42:45.434 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:42:45.434 -07 000000501 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:45.434 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:42:45.544 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:45.544 -07 000000474 INF: FPGA: 'ZDACW 29718' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-18 05:42:45.554 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:45.554 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:45.554 -07 000000501 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:42:45.554 -07 000000629 INF: FPGA: Recv ZDACR 29718
17-03-18 05:42:45.564 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:42:45.564 -07 000000474 INF: Z Motor: MoveAbsStepped took 141 ms (did NOT wait for settling yet))
17-03-18 05:42:45.564 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:45.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:42:45.614 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:42:45.614 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:45.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:42:45.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:42:45.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:45.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:45.624 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:42:45.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:42:45.624 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:42:45.754 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:45.754 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 329 ms overall
17-03-18 05:42:45.934 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:42:45.934 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:42:45.984 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:45.994 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:42:45.994 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:42:45.994 -07 000000501 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:45.994 -07 000000501 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:42:45.994 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-18 05:42:46.794 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:46.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:46.944 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:46.944 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:42:46.954 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:46.954 -07 000000501 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:46.984 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:46.984 -07 000000501 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:46.984 -07 000000501 INF: Y Motor: Moved to 69.0264 after 1565 ms (table move)
17-03-18 05:42:46.984 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136040 mm (DAC = 29718)
17-03-18 05:42:46.984 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:46.984 -07 000000455 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:42:46.994 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:42:46.994 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:46.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30473
17-03-18 05:42:47.004 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.004 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.004 -07 000000501 INF: FPGA: Recv ZSGSRD 30460
17-03-18 05:42:47.014 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.014 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.014 -07 000000501 INF: FPGA: Recv ZSGSRD 30459
17-03-18 05:42:47.024 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.024 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.024 -07 000000501 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:42:47.034 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.034 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.034 -07 000000501 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:42:47.044 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.044 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.044 -07 000000424 INF: FPGA: Recv ZSGSRD 30467
17-03-18 05:42:47.054 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.054 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.054 -07 000000501 INF: FPGA: Recv ZSGSRD 30459
17-03-18 05:42:47.064 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.064 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.064 -07 000000501 INF: FPGA: Recv ZSGSRD 30465
17-03-18 05:42:47.074 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.074 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:47.074 -07 000000501 INF: FPGA: Recv ZSGSRD 30470
17-03-18 05:42:47.084 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.084 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:47.084 -07 000000501 INF: FPGA: Recv ZPIEZORD 26269
17-03-18 05:42:47.094 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.535 V. Piezo Error = -9.2 V.
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30465 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30459 (-135.2 uncal um), Max = 30473 (-135.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30465, posNoise = 8, negNoise = 6
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: After move to -0.136040, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: Settle wait time = 1568 ms, measure time = 104 ms (allowed 150 ms), total time = 1672 ms
17-03-18 05:42:47.094 -07 000000606 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:47.144 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 05:42:47.144 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:47.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:47.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:47.144 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:47.144 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:47.144 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:47.144 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:47.144 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:42:47.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:47.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:47.154 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:47.164 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:42:47.164 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:42:47.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:47.204 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:47.504 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:47.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:47.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:47.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:47.544 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:47.544 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:47.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:42:47.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:47.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:47.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:47.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:47.644 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:47.644 -07 000000474 INF: Autofocus start
17-03-18 05:42:47.644 -07 000000474 INF: MeasureProfile start
17-03-18 05:42:47.644 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:47.654 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:47.654 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:47.654 -07 000000474 INF: MeasureProfile done
17-03-18 05:42:47.654 -07 000000474 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:42:47.654 -07 000000474 INF: Autofocus finished
17-03-18 05:42:47.854 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:47.854 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:42:47.864 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136036974909883. ----------
17-03-18 05:42:47.864 -07 000000610 INF: Cycle	140	Tile	12	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:47.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28196, sync = True, waitForSettling = True)
17-03-18 05:42:47.864 -07 000000610 INF: Z Motor: Moving to -0.129073 mm, started at -0.136037 mm, distance = 6.96 um
17-03-18 05:42:47.864 -07 000000610 INF: FPGA: Xmit ZDACW 28196\n [Z Motor]
17-03-18 05:42:47.864 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:42:47.874 -07 000000610 INF: FPGA: 'ZDACW 28196' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:47.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:47.874 -07 000000444 INF: FPGA: Recv ZDACR 28196
17-03-18 05:42:47.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:47.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:48.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29383
17-03-18 05:42:48.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:48.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29381
17-03-18 05:42:48.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.054 -07 000000487 INF: FPGA: Recv ZSGSRD 29382
17-03-18 05:42:48.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.064 -07 000000437 INF: FPGA: Recv ZSGSRD 29378
17-03-18 05:42:48.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.074 -07 000000487 INF: FPGA: Recv ZSGSRD 29381
17-03-18 05:42:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29389
17-03-18 05:42:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.094 -07 000000501 INF: FPGA: Recv ZSGSRD 29379
17-03-18 05:42:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.104 -07 000000437 INF: FPGA: Recv ZSGSRD 29377
17-03-18 05:42:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.114 -07 000000487 INF: FPGA: Recv ZSGSRD 29384
17-03-18 05:42:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:48.124 -07 000000437 INF: FPGA: Recv ZSGSRD 29382
17-03-18 05:42:48.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:48.134 -07 000000501 INF: FPGA: Recv ZPIEZORD 24849
17-03-18 05:42:48.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:48.144 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.9 V.
17-03-18 05:42:48.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29382 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29382 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29377 (-128.3 uncal um), Max = 29389 (-128.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:42:48.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29382, posNoise = 7, negNoise = 5
17-03-18 05:42:48.144 -07 000000610 INF: Z Motor: After move to -0.129073, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:48.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:42:48.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:48.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:48.144 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:48.144 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:48.144 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:48.144 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:48.144 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:48.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:48.144 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:42:48.144 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:48.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:48.144 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:48.154 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:48.154 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:48.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:48.154 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:48.164 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:42:48.164 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:42:48.164 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:42:48.164 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:42:48.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28373 150\n [Camera]
17-03-18 05:42:48.364 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:48.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:48.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:48.814 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:48.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:48.814 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:48.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:48.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:48.814 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:48.824 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:48.824 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:49.004 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28373 828
17-03-18 05:42:49.154 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:42:49.214 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:42:49.214 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:42:49.214 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:49.214 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:49.214 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:42:49.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:42:49.224 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:42:49.224 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:49.224 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:49.234 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:42:49.334 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.02213,
17-03-18 05:42:49.364 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:49.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:49.364 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:49.374 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:49.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:49.374 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:49.374 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:49.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:42:49.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:49.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:42:49.554 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:49.564 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:49.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28373 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-18 05:42:49.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:49.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129079553160355. ------
17-03-18 05:42:49.684 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:49.684 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13560 mm
17-03-18 05:42:49.684 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:49.684 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:49.684 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:42:49.684 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29621, sync = True, waitForSettling = False)
17-03-18 05:42:49.684 -07 000000487 INF: Z Motor: Moving to -0.135596 mm, started at -0.129080 mm, distance = -6.52 um
17-03-18 05:42:49.684 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:42:49.694 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:49.694 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:42:49.694 -07 000000444 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:42:49.704 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:42:49.704 -07 000000012 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:49.704 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:49.704 -07 000000012 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:42:49.704 -07 000000487 INF: FPGA: Xmit ZDACW 29621\n [Z Motor]
17-03-18 05:42:49.704 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:42:49.714 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:49.714 -07 000000487 INF: FPGA: 'ZDACW 29621' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:42:49.724 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:49.734 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:49.734 -07 000000455 INF: FPGA: Recv ZDACR 29621
17-03-18 05:42:49.744 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:49.744 -07 000000487 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:42:49.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:49.774 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:49.774 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:49.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:42:49.774 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:42:49.774 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:49.774 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:49.784 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:42:49.784 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:49.784 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:42:49.914 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:49.914 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 05:42:50.104 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:42:50.104 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:42:50.144 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:50.154 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:42:50.164 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:50.164 -07 000000012 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:50.164 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:42:50.164 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.121 mm/sec
17-03-18 05:42:51.114 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:51.114 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:42:51.124 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.124 -07 000000012 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:51.154 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:51.154 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:51.154 -07 000000012 INF: Y Motor: Moved to 69.8628 after 1465 ms (table move)
17-03-18 05:42:51.154 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135596 mm (DAC = 29621)
17-03-18 05:42:51.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.164 -07 000000629 INF: FPGA: Recv ZSGSRD 30401
17-03-18 05:42:51.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:42:51.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.164 -07 000000629 INF: FPGA: Recv ZSGSRD 30400
17-03-18 05:42:51.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.174 -07 000000629 INF: FPGA: Recv ZSGSRD 30394
17-03-18 05:42:51.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.184 -07 000000629 INF: FPGA: Recv ZSGSRD 30394
17-03-18 05:42:51.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.194 -07 000000629 INF: FPGA: Recv ZSGSRD 30396
17-03-18 05:42:51.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.204 -07 000000629 INF: FPGA: Recv ZSGSRD 30397
17-03-18 05:42:51.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.214 -07 000000455 INF: FPGA: Recv ZSGSRD 30392
17-03-18 05:42:51.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.224 -07 000000629 INF: FPGA: Recv ZSGSRD 30403
17-03-18 05:42:51.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.234 -07 000000012 INF: FPGA: Recv ZSGSRD 30399
17-03-18 05:42:51.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:51.244 -07 000000487 INF: FPGA: Recv ZSGSRD 30400
17-03-18 05:42:51.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.254 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:51.254 -07 000000012 INF: FPGA: Recv ZPIEZORD 26182
17-03-18 05:42:51.264 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -9.3 V.
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30398 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30398 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30392 (-134.8 uncal um), Max = 30403 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30398, posNoise = 5, negNoise = 6
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: After move to -0.135596, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: Settle wait time = 1468 ms, measure time = 103 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:42:51.264 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:51.314 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:42:51.314 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:51.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:51.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:51.314 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:51.314 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:51.314 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:51.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:51.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:51.314 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:51.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:51.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:51.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:51.324 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:42:51.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:51.374 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:51.674 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:51.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:51.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:51.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:42:51.714 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:51.714 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:51.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:42:51.794 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:51.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:42:51.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:51.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:42:51.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:42:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:51.814 -07 000000012 INF: Autofocus start
17-03-18 05:42:51.814 -07 000000012 INF: MeasureProfile start
17-03-18 05:42:51.814 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:51.814 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:51.824 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:42:51.824 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:51.824 -07 000000012 INF: MeasureProfile done
17-03-18 05:42:51.824 -07 000000012 INF: X=48  Z correction [um]=0.2069503
17-03-18 05:42:51.824 -07 000000012 INF: Autofocus finished
17-03-18 05:42:52.024 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:52.024 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:42:52.024 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135606552696385. ----------
17-03-18 05:42:52.024 -07 000000610 INF: Cycle	140	Tile	13	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:52.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28179, sync = True, waitForSettling = True)
17-03-18 05:42:52.034 -07 000000610 INF: Z Motor: Moving to -0.128995 mm, started at -0.135607 mm, distance = 6.61 um
17-03-18 05:42:52.034 -07 000000610 INF: FPGA: Xmit ZDACW 28179\n [Z Motor]
17-03-18 05:42:52.034 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:42:52.044 -07 000000610 INF: FPGA: 'ZDACW 28179' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:52.044 -07 000000474 INF: FPGA: Recv ZDACR 28179
17-03-18 05:42:52.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:52.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.204 -07 000000474 INF: FPGA: Recv ZSGSRD 29375
17-03-18 05:42:52.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:52.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29371
17-03-18 05:42:52.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29362
17-03-18 05:42:52.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.234 -07 000000625 INF: FPGA: Recv ZSGSRD 29369
17-03-18 05:42:52.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.244 -07 000000625 INF: FPGA: Recv ZSGSRD 29376
17-03-18 05:42:52.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.254 -07 000000625 INF: FPGA: Recv ZSGSRD 29365
17-03-18 05:42:52.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29369
17-03-18 05:42:52.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.274 -07 000000625 INF: FPGA: Recv ZSGSRD 29369
17-03-18 05:42:52.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29372
17-03-18 05:42:52.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:52.294 -07 000000625 INF: FPGA: Recv ZSGSRD 29372
17-03-18 05:42:52.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:52.304 -07 000000590 INF: FPGA: Recv ZPIEZORD 24851
17-03-18 05:42:52.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:52.314 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.9 V.
17-03-18 05:42:52.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29370 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29370 (-128.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29362 (-128.2 uncal um), Max = 29376 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:42:52.324 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29370, posNoise = 6, negNoise = 8
17-03-18 05:42:52.324 -07 000000610 INF: Z Motor: After move to -0.128995, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:52.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 05:42:52.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:52.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:52.324 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:52.324 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:52.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:52.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:52.324 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:52.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:52.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:52.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:52.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:52.324 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:52.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:42:52.334 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:52.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:42:52.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:52.334 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:42:52.334 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:42:52.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:42:52.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:42:52.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28356 150\n [Camera]
17-03-18 05:42:52.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:52.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:52.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:52.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:52.994 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:52.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:52.994 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:52.994 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:52.994 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:42:52.994 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:52.994 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:42:53.184 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28356 828
17-03-18 05:42:53.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:53.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:42:53.384 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:42:53.384 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:53.384 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:53.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:42:53.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:42:53.384 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:53.384 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:53.384 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:42:53.394 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:42:53.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:53.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:53.544 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:53.544 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:53.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:53.544 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:53.544 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:53.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:42:53.554 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:53.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:42:53.734 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:42:53.734 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:53.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28356 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-18 05:42:53.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:53.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129002462614654. ------
17-03-18 05:42:53.744 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:53.744 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13533 mm
17-03-18 05:42:53.744 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:53.744 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:42:53.744 -07 000000590 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:42:53.744 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29562, sync = True, waitForSettling = False)
17-03-18 05:42:53.744 -07 000000455 INF: Z Motor: Moving to -0.135326 mm, started at -0.129002 mm, distance = -6.32 um
17-03-18 05:42:53.754 -07 000000455 INF: FPGA: Xmit ZDACW 29562\n [Z Motor]
17-03-18 05:42:53.764 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:53.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:42:53.944 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:42:53.944 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:53.954 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:42:53.954 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:42:53.954 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:53.954 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:53.954 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:42:53.954 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:42:53.964 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:42:53.964 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:53.964 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:42:53.964 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:42:53.964 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 223 ms overall
17-03-18 05:42:53.964 -07 000000590 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:53.964 -07 000000590 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:53.964 -07 000000590 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:42:53.974 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 226 ms overall
17-03-18 05:42:53.974 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:53.974 -07 000000455 INF: FPGA: 'ZDACW 29562' command took 0 ms to send, 209 ms to get response, and 222 ms overall
17-03-18 05:42:53.984 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:53.994 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:53.994 -07 000000501 INF: FPGA: Recv ZDACR 29562
17-03-18 05:42:54.004 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:42:54.004 -07 000000455 INF: Z Motor: MoveAbsStepped took 254 ms (did NOT wait for settling yet))
17-03-18 05:42:54.184 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:54.184 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:42:54.344 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:42:54.344 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:42:54.404 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:54.404 -07 000000455 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:42:54.414 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:54.414 -07 000000590 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:54.414 -07 000000590 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:42:54.414 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-18 05:42:54.694 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.000345,
17-03-18 05:42:55.364 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:55.364 -07 000000437 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:42:55.374 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:55.374 -07 000000590 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:55.404 -07 000000590 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:55.404 -07 000000590 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:42:55.404 -07 000000590 INF: Y Motor: Moved to 70.6880 after 1657 ms (table move)
17-03-18 05:42:55.404 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135326 mm (DAC = 29562)
17-03-18 05:42:55.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.414 -07 000000501 INF: FPGA: Recv ZSGSRD 30354
17-03-18 05:42:55.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:42:55.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30361
17-03-18 05:42:55.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:42:55.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.424 -07 000000501 INF: FPGA: Recv ZSGSRD 30348
17-03-18 05:42:55.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30354
17-03-18 05:42:55.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30354
17-03-18 05:42:55.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.454 -07 000000437 INF: FPGA: Recv ZSGSRD 30356
17-03-18 05:42:55.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.464 -07 000000437 INF: FPGA: Recv ZSGSRD 30359
17-03-18 05:42:55.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.474 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.474 -07 000000590 INF: FPGA: Recv ZSGSRD 30355
17-03-18 05:42:55.484 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.484 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.484 -07 000000590 INF: FPGA: Recv ZSGSRD 30360
17-03-18 05:42:55.494 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.494 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:55.494 -07 000000501 INF: FPGA: Recv ZSGSRD 30353
17-03-18 05:42:55.504 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.504 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:55.504 -07 000000618 INF: FPGA: Recv ZPIEZORD 26188
17-03-18 05:42:55.514 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.2 V.
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30355 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30354 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30348 (-134.5 uncal um), Max = 30361 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30355, posNoise = 6, negNoise = 7
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: After move to -0.135326, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: Settle wait time = 1662 ms, measure time = 102 ms (allowed 150 ms), total time = 1764 ms
17-03-18 05:42:55.514 -07 000000474 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:55.564 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 05:42:55.564 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:55.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:55.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:55.564 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:55.564 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:55.564 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:55.564 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:55.564 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:55.564 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:55.574 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:55.574 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:55.574 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:42:55.574 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:42:55.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:55.624 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:42:55.924 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:42:55.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:42:55.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:42:55.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:42:55.964 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:42:55.964 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 05:42:55.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:42:56.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:42:56.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:56.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:42:56.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:42:56.064 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:56.064 -07 000000579 INF: Autofocus start
17-03-18 05:42:56.064 -07 000000579 INF: MeasureProfile start
17-03-18 05:42:56.064 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:56.074 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:56.074 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:42:56.074 -07 000000579 INF: MeasureProfile done
17-03-18 05:42:56.074 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:42:56.074 -07 000000579 INF: Autofocus finished
17-03-18 05:42:56.274 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:42:56.274 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:42:56.284 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135330311574289. ----------
17-03-18 05:42:56.284 -07 000000610 INF: Cycle	140	Tile	14	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:42:56.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28057, sync = True, waitForSettling = True)
17-03-18 05:42:56.284 -07 000000610 INF: Z Motor: Moving to -0.128437 mm, started at -0.135330 mm, distance = 6.89 um
17-03-18 05:42:56.284 -07 000000610 INF: FPGA: Xmit ZDACW 28057\n [Z Motor]
17-03-18 05:42:56.294 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:42:56.304 -07 000000610 INF: FPGA: 'ZDACW 28057' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:56.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:56.304 -07 000000618 INF: FPGA: Recv ZDACR 28057
17-03-18 05:42:56.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:42:56.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.464 -07 000000590 INF: FPGA: Recv ZSGSRD 29277
17-03-18 05:42:56.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:56.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29284
17-03-18 05:42:56.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.484 -07 000000590 INF: FPGA: Recv ZSGSRD 29286
17-03-18 05:42:56.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29285
17-03-18 05:42:56.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.504 -07 000000585 INF: FPGA: Recv ZSGSRD 29278
17-03-18 05:42:56.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.514 -07 000000618 INF: FPGA: Recv ZSGSRD 29289
17-03-18 05:42:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.524 -07 000000501 INF: FPGA: Recv ZSGSRD 29283
17-03-18 05:42:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29285
17-03-18 05:42:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.544 -07 000000437 INF: FPGA: Recv ZSGSRD 29279
17-03-18 05:42:56.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:56.554 -07 000000590 INF: FPGA: Recv ZSGSRD 29282
17-03-18 05:42:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:56.564 -07 000000569 INF: FPGA: Recv ZPIEZORD 24779
17-03-18 05:42:56.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:56.574 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.9 V.
17-03-18 05:42:56.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29283 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29284 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29277 (-127.6 uncal um), Max = 29289 (-127.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:56.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29283, posNoise = 6, negNoise = 6
17-03-18 05:42:56.574 -07 000000610 INF: Z Motor: After move to -0.128437, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:56.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:42:56.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:56.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:56.574 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:56.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:56.574 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:42:56.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:42:56.574 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:42:56.574 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:56.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:42:56.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:42:56.584 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:56.584 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:42:56.584 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:42:56.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:42:56.584 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:56.584 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:42:56.594 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:42:56.594 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:42:56.594 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:42:56.594 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:42:56.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28234 150\n [Camera]
17-03-18 05:42:56.794 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:42:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:42:56.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:42:57.234 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:42:57.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:42:57.244 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:57.244 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:57.244 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:42:57.244 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:42:57.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:42:57.244 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:57.244 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:57.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:42:57.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28234 828
17-03-18 05:42:57.584 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:42:57.634 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:42:57.634 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:42:57.644 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:57.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:42:57.644 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:42:57.644 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:57.644 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:57.644 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:42:57.644 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:57.654 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:42:57.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:42:57.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:42:57.794 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:42:57.794 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:42:57.794 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:42:57.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:42:57.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:42:57.794 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:42:57.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:42:57.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:42:57.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:42:57.984 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:42:57.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28234 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-18 05:42:57.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:42:57.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128443556158321. ------
17-03-18 05:42:57.994 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:42:57.994 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13512 mm
17-03-18 05:42:57.994 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:42:58.114 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:42:58.114 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 05:42:58.114 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:42:58.114 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29518, sync = True, waitForSettling = False)
17-03-18 05:42:58.114 -07 000000579 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:42:58.114 -07 000000474 INF: Z Motor: Moving to -0.135125 mm, started at -0.128444 mm, distance = -6.68 um
17-03-18 05:42:58.114 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:42:58.124 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:58.124 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:42:58.134 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:42:58.134 -07 000000579 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:58.134 -07 000000579 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:42:58.134 -07 000000579 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:42:58.134 -07 000000474 INF: FPGA: Xmit ZDACW 29518\n [Z Motor]
17-03-18 05:42:58.134 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:42:58.144 -07 000000474 INF: FPGA: 'ZDACW 29518' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:42:58.144 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:42:58.144 -07 000000447 INF: FPGA: Recv ZDACR 29518
17-03-18 05:42:58.154 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:42:58.154 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:58.154 -07 000000474 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:42:58.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:42:58.194 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:42:58.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:58.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:42:58.194 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:42:58.194 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:42:58.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:42:58.204 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:42:58.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:42:58.204 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:42:58.314 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:42:58.314 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:42:58.524 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:42:58.524 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:42:58.574 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:58.584 -07 000000618 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:42:58.584 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:42:58.584 -07 000000579 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:58.584 -07 000000579 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:42:58.584 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 05:42:59.534 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:42:59.534 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:42:59.544 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:42:59.544 -07 000000579 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:42:59.574 -07 000000579 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:42:59.574 -07 000000579 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:42:59.574 -07 000000579 INF: Y Motor: Moved to 71.5186 after 1461 ms (table move)
17-03-18 05:42:59.574 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135125 mm (DAC = 29518)
17-03-18 05:42:59.574 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.574 -07 000000501 INF: FPGA: Recv ZSGSRD 30328
17-03-18 05:42:59.584 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:42:59.584 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.584 -07 000000501 INF: FPGA: Recv ZSGSRD 30327
17-03-18 05:42:59.594 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.594 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.594 -07 000000579 INF: FPGA: Recv ZSGSRD 30329
17-03-18 05:42:59.604 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.604 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.604 -07 000000606 INF: FPGA: Recv ZSGSRD 30321
17-03-18 05:42:59.614 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.614 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.614 -07 000000606 INF: FPGA: Recv ZSGSRD 30319
17-03-18 05:42:59.624 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.624 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.624 -07 000000579 INF: FPGA: Recv ZSGSRD 30328
17-03-18 05:42:59.634 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.634 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.634 -07 000000579 INF: FPGA: Recv ZSGSRD 30324
17-03-18 05:42:59.644 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.644 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.644 -07 000000606 INF: FPGA: Recv ZSGSRD 30321
17-03-18 05:42:59.654 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.654 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.654 -07 000000579 INF: FPGA: Recv ZSGSRD 30326
17-03-18 05:42:59.664 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.664 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:42:59.664 -07 000000501 INF: FPGA: Recv ZSGSRD 30326
17-03-18 05:42:59.674 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.674 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:42:59.674 -07 000000606 INF: FPGA: Recv ZPIEZORD 26155
17-03-18 05:42:59.684 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.2 V.
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30325 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30326 (-134.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30319 (-134.3 uncal um), Max = 30329 (-134.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30325, posNoise = 4, negNoise = 6
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: After move to -0.135125, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:42:59.684 -07 000000455 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:42:59.734 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 05:42:59.734 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:42:59.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:42:59.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:42:59.734 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:42:59.734 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:42:59.734 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:42:59.734 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:42:59.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:42:59.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:42:59.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:42:59.744 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:42:59.754 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:42:59.754 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:42:59.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:42:59.804 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:43:00.054 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.983999,
17-03-18 05:43:00.104 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:43:00.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:43:00.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:43:00.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:43:00.144 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:43:00.144 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:43:00.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:43:00.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:43:00.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:00.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:43:00.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:43:00.244 -07 000000501 INF: Autofocus start
17-03-18 05:43:00.244 -07 000000501 INF: MeasureProfile start
17-03-18 05:43:00.244 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:00.244 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:00.254 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:43:00.254 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:43:00.254 -07 000000501 INF: MeasureProfile done
17-03-18 05:43:00.254 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:43:00.254 -07 000000501 INF: Autofocus finished
17-03-18 05:43:00.454 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:43:00.454 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:43:00.454 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135137585210036. ----------
17-03-18 05:43:00.464 -07 000000610 INF: Cycle	140	Tile	15	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:43:00.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28025, sync = True, waitForSettling = True)
17-03-18 05:43:00.464 -07 000000610 INF: Z Motor: Moving to -0.128290 mm, started at -0.135138 mm, distance = 6.85 um
17-03-18 05:43:00.464 -07 000000610 INF: FPGA: Xmit ZDACW 28025\n [Z Motor]
17-03-18 05:43:00.464 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:43:00.474 -07 000000610 INF: FPGA: 'ZDACW 28025' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:43:00.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:00.474 -07 000000455 INF: FPGA: Recv ZDACR 28025
17-03-18 05:43:00.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:43:00.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.634 -07 000000012 INF: FPGA: Recv ZSGSRD 29262
17-03-18 05:43:00.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:00.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.644 -07 000000629 INF: FPGA: Recv ZSGSRD 29259
17-03-18 05:43:00.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.654 -07 000000501 INF: FPGA: Recv ZSGSRD 29262
17-03-18 05:43:00.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.664 -07 000000606 INF: FPGA: Recv ZSGSRD 29257
17-03-18 05:43:00.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.674 -07 000000579 INF: FPGA: Recv ZSGSRD 29259
17-03-18 05:43:00.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.684 -07 000000625 INF: FPGA: Recv ZSGSRD 29265
17-03-18 05:43:00.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.694 -07 000000501 INF: FPGA: Recv ZSGSRD 29256
17-03-18 05:43:00.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.704 -07 000000455 INF: FPGA: Recv ZSGSRD 29258
17-03-18 05:43:00.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.714 -07 000000606 INF: FPGA: Recv ZSGSRD 29257
17-03-18 05:43:00.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:00.724 -07 000000012 INF: FPGA: Recv ZSGSRD 29262
17-03-18 05:43:00.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:00.734 -07 000000579 INF: FPGA: Recv ZPIEZORD 24778
17-03-18 05:43:00.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:00.744 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-18 05:43:00.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29259 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29256 (-127.5 uncal um), Max = 29265 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:43:00.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 5, negNoise = 4
17-03-18 05:43:00.744 -07 000000610 INF: Z Motor: After move to -0.128290, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:00.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:43:00.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:00.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:00.744 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:00.744 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:00.744 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:43:00.744 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:43:00.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:00.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:43:00.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:43:00.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:43:00.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:43:00.744 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:43:00.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:43:00.744 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:43:00.744 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:00.744 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:43:00.754 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:43:00.754 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:43:00.754 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:43:00.754 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:43:00.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28202 150\n [Camera]
17-03-18 05:43:00.964 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:43:01.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:43:01.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:43:01.404 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:01.404 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:43:01.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:43:01.414 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:01.414 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:01.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:43:01.414 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:01.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:43:01.594 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28202 828
17-03-18 05:43:01.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:43:01.794 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:43:01.794 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:43:01.794 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:43:01.794 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:01.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:43:01.794 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:43:01.794 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:01.794 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:01.794 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:43:01.794 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:01.804 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:43:01.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:43:01.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:43:01.964 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:01.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:43:01.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:43:01.964 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:01.974 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:01.974 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:43:01.974 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:01.974 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:43:02.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:43:02.154 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:43:02.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28202 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-18 05:43:02.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:43:02.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128295799279061. ------
17-03-18 05:43:02.274 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:02.284 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13464 mm
17-03-18 05:43:02.284 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:43:02.284 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:02.284 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:43:02.284 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:43:02.284 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29412, sync = True, waitForSettling = False)
17-03-18 05:43:02.284 -07 000000444 INF: Z Motor: Moving to -0.134640 mm, started at -0.128296 mm, distance = -6.34 um
17-03-18 05:43:02.294 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:02.294 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:02.294 -07 000000629 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:43:02.304 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:43:02.304 -07 000000012 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:02.304 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:43:02.304 -07 000000012 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:43:02.304 -07 000000444 INF: FPGA: Xmit ZDACW 29412\n [Z Motor]
17-03-18 05:43:02.304 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:43:02.314 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:43:02.314 -07 000000444 INF: FPGA: 'ZDACW 29412' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:43:02.324 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:43:02.334 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:02.334 -07 000000579 INF: FPGA: Recv ZDACR 29412
17-03-18 05:43:02.344 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:43:02.344 -07 000000444 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:43:02.354 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:43:02.354 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:43:02.354 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:02.364 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:02.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:43:02.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:43:02.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:02.364 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:43:02.364 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:02.364 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:43:02.514 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:43:02.514 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:43:02.694 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 05:43:02.694 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:43:02.744 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:02.754 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:43:02.754 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:43:02.754 -07 000000012 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:02.754 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:43:02.754 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:43:03.704 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:03.704 -07 000000455 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:43:03.714 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:03.714 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:03.744 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:43:03.744 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:43:03.744 -07 000000012 INF: Y Motor: Moved to 72.3491 after 1458 ms (table move)
17-03-18 05:43:03.744 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134640 mm (DAC = 29412)
17-03-18 05:43:03.744 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.744 -07 000000012 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:43:03.754 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:43:03.754 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.754 -07 000000012 INF: FPGA: Recv ZSGSRD 30246
17-03-18 05:43:03.764 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.764 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.764 -07 000000606 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:43:03.774 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.774 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.774 -07 000000444 INF: FPGA: Recv ZSGSRD 30245
17-03-18 05:43:03.784 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.784 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.784 -07 000000444 INF: FPGA: Recv ZSGSRD 30244
17-03-18 05:43:03.794 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.794 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.794 -07 000000444 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:43:03.804 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.804 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30249
17-03-18 05:43:03.814 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.814 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30249
17-03-18 05:43:03.824 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.824 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:43:03.834 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:03.844 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:03.844 -07 000000606 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:43:03.854 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:43:03.854 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:03.854 -07 000000487 INF: FPGA: Recv ZPIEZORD 26076
17-03-18 05:43:03.864 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -9.2 V.
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30248 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30249 (-133.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30244 (-133.8 uncal um), Max = 30250 (-133.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30248, posNoise = 2, negNoise = 4
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: After move to -0.134640, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: Settle wait time = 1461 ms, measure time = 116 ms (allowed 150 ms), total time = 1577 ms
17-03-18 05:43:03.864 -07 000000611 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:43:03.904 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:43:03.904 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:43:03.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:03.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:03.904 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:03.904 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:03.904 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:43:03.904 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:03.904 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:43:03.904 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:43:03.914 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:03.914 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:43:03.924 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:43:03.924 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:43:03.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:43:03.974 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:43:04.274 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:43:04.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:43:04.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:43:04.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:43:04.314 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:43:04.314 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:43:04.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 387 ms to get response, and 391 ms overall
17-03-18 05:43:04.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:43:04.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:04.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:43:04.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:43:04.414 -07 000000606 INF: Autofocus start
17-03-18 05:43:04.414 -07 000000606 INF: MeasureProfile start
17-03-18 05:43:04.414 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:04.414 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:04.424 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:43:04.424 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:43:04.424 -07 000000606 INF: MeasureProfile done
17-03-18 05:43:04.424 -07 000000606 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:43:04.424 -07 000000606 INF: Autofocus finished
17-03-18 05:43:04.624 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:43:04.624 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:43:04.624 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.13464292087512. ----------
17-03-18 05:43:04.624 -07 000000610 INF: Cycle	140	Tile	16	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:43:04.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27953, sync = True, waitForSettling = True)
17-03-18 05:43:04.634 -07 000000610 INF: Z Motor: Moving to -0.127961 mm, started at -0.134643 mm, distance = 6.68 um
17-03-18 05:43:04.634 -07 000000610 INF: FPGA: Xmit ZDACW 27953\n [Z Motor]
17-03-18 05:43:04.634 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:43:04.644 -07 000000610 INF: FPGA: 'ZDACW 27953' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:43:04.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:04.644 -07 000000455 INF: FPGA: Recv ZDACR 27953
17-03-18 05:43:04.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:43:04.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.804 -07 000000606 INF: FPGA: Recv ZSGSRD 29208
17-03-18 05:43:04.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29210
17-03-18 05:43:04.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.824 -07 000000606 INF: FPGA: Recv ZSGSRD 29210
17-03-18 05:43:04.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.834 -07 000000487 INF: FPGA: Recv ZSGSRD 29204
17-03-18 05:43:04.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.844 -07 000000611 INF: FPGA: Recv ZSGSRD 29207
17-03-18 05:43:04.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.854 -07 000000611 INF: FPGA: Recv ZSGSRD 29212
17-03-18 05:43:04.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.864 -07 000000455 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:43:04.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.874 -07 000000487 INF: FPGA: Recv ZSGSRD 29213
17-03-18 05:43:04.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:43:04.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:04.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29208
17-03-18 05:43:04.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:04.904 -07 000000455 INF: FPGA: Recv ZPIEZORD 24693
17-03-18 05:43:04.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:04.914 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.265 V. Piezo Error = -9.9 V.
17-03-18 05:43:04.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29209 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29204 (-127.2 uncal um), Max = 29213 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:43:04.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29209, posNoise = 4, negNoise = 5
17-03-18 05:43:04.914 -07 000000610 INF: Z Motor: After move to -0.127961, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:04.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:43:04.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:04.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:04.914 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:04.914 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:04.914 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:43:04.914 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:04.914 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:43:04.914 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:43:04.914 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:43:04.914 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:43:04.914 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:43:04.914 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:43:04.914 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:04.914 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:43:04.924 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:43:04.924 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:43:04.924 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:43:04.924 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:43:04.934 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:43:04.934 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:43:04.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28130 150\n [Camera]
17-03-18 05:43:05.134 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:43:05.414 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.96762,
17-03-18 05:43:05.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:43:05.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:43:05.574 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:05.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:43:05.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:43:05.574 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:05.584 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:05.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:43:05.584 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:05.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:43:05.764 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28130 828
17-03-18 05:43:05.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:43:05.954 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:43:05.954 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 05:43:05.954 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:05.954 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:43:05.954 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:05.954 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:43:05.954 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:05.964 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:05.964 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:43:05.964 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:43:06.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:43:06.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:43:06.134 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:06.134 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:43:06.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:43:06.134 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:06.134 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:06.134 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:43:06.134 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:06.134 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:43:06.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:43:06.324 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:43:06.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28130 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:43:06.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:43:06.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.127968164459831. ------
17-03-18 05:43:06.324 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:06.324 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13452 mm
17-03-18 05:43:06.324 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:43:06.334 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:43:06.334 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:43:06.334 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:06.334 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29385, sync = True, waitForSettling = False)
17-03-18 05:43:06.334 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:06.334 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 05:43:06.334 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:43:06.334 -07 000000474 INF: Z Motor: Moving to -0.134516 mm, started at -0.127968 mm, distance = -6.55 um
17-03-18 05:43:06.344 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:43:06.344 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:06.344 -07 000000606 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:06.344 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:43:06.344 -07 000000606 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:43:06.354 -07 000000474 INF: FPGA: Xmit ZDACW 29385\n [Z Motor]
17-03-18 05:43:06.354 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:43:06.364 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:43:06.364 -07 000000474 INF: FPGA: 'ZDACW 29385' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:43:06.374 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:06.374 -07 000000579 INF: FPGA: Recv ZDACR 29385
17-03-18 05:43:06.384 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:43:06.384 -07 000000474 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:43:06.524 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:43:06.524 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:43:06.524 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:06.534 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:06.534 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:43:06.534 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:43:06.534 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:06.534 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:06.534 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:43:06.534 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:43:06.544 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:43:06.544 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall
17-03-18 05:43:06.734 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:43:06.734 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:43:06.784 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:06.794 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:43:06.794 -07 000000437 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:43:06.794 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:43:06.794 -07 000000606 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:06.794 -07 000000606 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:43:06.794 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 05:43:07.744 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:07.744 -07 000000487 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:43:07.754 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:07.754 -07 000000606 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:07.784 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:43:07.784 -07 000000606 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:43:07.784 -07 000000606 INF: Y Motor: Moved to 73.1753 after 1451 ms (table move)
17-03-18 05:43:07.784 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134516 mm (DAC = 29385)
17-03-18 05:43:07.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.794 -07 000000474 INF: FPGA: Recv ZSGSRD 30232
17-03-18 05:43:07.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:43:07.794 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.794 -07 000000437 INF: FPGA: Recv ZSGSRD 30232
17-03-18 05:43:07.804 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.804 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.804 -07 000000591 INF: FPGA: Recv ZSGSRD 30215
17-03-18 05:43:07.814 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.814 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30231
17-03-18 05:43:07.824 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.824 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30228
17-03-18 05:43:07.834 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.834 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.834 -07 000000437 INF: FPGA: Recv ZSGSRD 30230
17-03-18 05:43:07.844 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.844 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.844 -07 000000591 INF: FPGA: Recv ZSGSRD 30227
17-03-18 05:43:07.854 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.854 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.854 -07 000000447 INF: FPGA: Recv ZSGSRD 30226
17-03-18 05:43:07.864 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.864 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.864 -07 000000590 INF: FPGA: Recv ZSGSRD 30229
17-03-18 05:43:07.874 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:07.874 -07 000000606 INF: FPGA: Recv ZSGSRD 30237
17-03-18 05:43:07.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.884 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:07.884 -07 000000591 INF: FPGA: Recv ZPIEZORD 26086
17-03-18 05:43:07.894 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.1 V.
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30229 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30230 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30215 (-133.6 uncal um), Max = 30237 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30229, posNoise = 8, negNoise = 14
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: After move to -0.134516, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:43:07.894 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:43:07.944 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:43:07.944 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:43:07.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:07.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:07.944 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:07.944 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:07.944 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:43:07.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:07.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:43:07.944 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:43:07.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:07.954 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:43:07.954 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:43:07.954 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:43:07.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:43:08.004 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:43:08.304 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:43:08.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:43:08.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:43:08.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:43:08.344 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:43:08.344 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:43:08.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:43:08.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:43:08.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:08.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:43:08.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:43:08.444 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:08.444 -07 000000474 INF: Autofocus start
17-03-18 05:43:08.444 -07 000000474 INF: MeasureProfile start
17-03-18 05:43:08.444 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:08.454 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:43:08.454 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:43:08.454 -07 000000474 INF: MeasureProfile done
17-03-18 05:43:08.454 -07 000000474 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:43:08.454 -07 000000474 INF: Autofocus finished
17-03-18 05:43:08.654 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:43:08.654 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:43:08.654 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134520860844427. ----------
17-03-18 05:43:08.654 -07 000000610 INF: Cycle	140	Tile	17	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:43:08.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27926, sync = True, waitForSettling = True)
17-03-18 05:43:08.664 -07 000000610 INF: Z Motor: Moving to -0.127837 mm, started at -0.134521 mm, distance = 6.68 um
17-03-18 05:43:08.664 -07 000000610 INF: FPGA: Xmit ZDACW 27926\n [Z Motor]
17-03-18 05:43:08.664 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:43:08.674 -07 000000610 INF: FPGA: 'ZDACW 27926' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:43:08.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:08.674 -07 000000474 INF: FPGA: Recv ZDACR 27926
17-03-18 05:43:08.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:43:08.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29190
17-03-18 05:43:08.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:08.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.844 -07 000000474 INF: FPGA: Recv ZSGSRD 29194
17-03-18 05:43:08.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.854 -07 000000474 INF: FPGA: Recv ZSGSRD 29190
17-03-18 05:43:08.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.864 -07 000000437 INF: FPGA: Recv ZSGSRD 29188
17-03-18 05:43:08.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.874 -07 000000437 INF: FPGA: Recv ZSGSRD 29187
17-03-18 05:43:08.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29187
17-03-18 05:43:08.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29188
17-03-18 05:43:08.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29195
17-03-18 05:43:08.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:43:08.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29193
17-03-18 05:43:08.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:08.934 -07 000000474 INF: FPGA: Recv ZSGSRD 29188
17-03-18 05:43:08.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:08.944 -07 000000474 INF: FPGA: Recv ZPIEZORD 24720
17-03-18 05:43:08.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:08.954 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.8 V.
17-03-18 05:43:08.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29190 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29189 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29187 (-127.1 uncal um), Max = 29195 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:43:08.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29190, posNoise = 5, negNoise = 3
17-03-18 05:43:08.954 -07 000000610 INF: Z Motor: After move to -0.127837, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:08.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:43:08.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:08.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:08.954 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:08.954 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:08.954 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:43:08.954 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:08.954 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:43:08.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:43:08.954 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:43:08.954 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:43:08.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:43:08.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:43:08.964 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:43:08.964 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:43:08.964 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:43:08.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:43:08.974 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:43:08.974 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:43:08.974 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:43:08.974 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:43:08.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28103 150\n [Camera]
17-03-18 05:43:09.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:43:09.624 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:43:09.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:43:09.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:09.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:09.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:43:09.624 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:43:09.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:43:09.624 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:09.624 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:09.624 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:43:09.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28103 828
17-03-18 05:43:09.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:43:10.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:43:10.014 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:43:10.014 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:10.014 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:43:10.014 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:43:10.014 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:10.014 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:10.014 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:43:10.014 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:10.024 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:43:10.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:43:10.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:43:10.174 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:10.174 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:10.174 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:43:10.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:43:10.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:43:10.184 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:10.184 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:10.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:43:10.364 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:43:10.364 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:43:10.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28103 150' command took 2 ms to send, 1379 ms to get response, and 1390 ms overall
17-03-18 05:43:10.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:43:10.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127846104429137. ------
17-03-18 05:43:10.374 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:10.374 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13367 mm
17-03-18 05:43:10.374 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:43:10.494 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:10.494 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 05:43:10.494 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:43:10.494 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:43:10.494 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29200, sync = True, waitForSettling = False)
17-03-18 05:43:10.494 -07 000000487 INF: Z Motor: Moving to -0.133669 mm, started at -0.127846 mm, distance = -5.82 um
17-03-18 05:43:10.504 -07 000000487 INF: FPGA: Xmit ZDACW 29200\n [Z Motor]
17-03-18 05:43:10.504 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:43:10.514 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:43:10.514 -07 000000487 INF: FPGA: 'ZDACW 29200' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:43:10.524 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:10.524 -07 000000606 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:43:10.534 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:10.534 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 05:43:10.534 -07 000000618 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:10.534 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:43:10.534 -07 000000618 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:43:10.534 -07 000000625 INF: FPGA: Recv ZDACR 29200
17-03-18 05:43:10.544 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:43:10.544 -07 000000487 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:43:10.544 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:43:10.574 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:43:10.574 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:43:10.574 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:10.574 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:43:10.574 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:43:10.574 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:10.584 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:10.584 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:43:10.584 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:43:10.584 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:43:10.714 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:43:10.714 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:43:10.814 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 3.96762,
17-03-18 05:43:10.914 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:43:10.914 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:43:10.954 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:10.964 -07 000000501 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:43:10.964 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:43:10.964 -07 000000618 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:10.964 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:43:10.964 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.847 mm, average velocity = 2.184 mm/sec
17-03-18 05:43:11.794 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:11.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:43:11.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:11.914 -07 000000629 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:43:11.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:11.924 -07 000000618 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:11.944 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:43:11.944 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:43:11.944 -07 000000618 INF: Y Motor: Moved to 74.0073 after 1452 ms (table move)
17-03-18 05:43:11.944 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133669 mm (DAC = 29200)
17-03-18 05:43:11.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:11.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30093
17-03-18 05:43:11.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:43:11.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:11.954 -07 000000618 INF: FPGA: Recv ZSGSRD 30106
17-03-18 05:43:11.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:43:11.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:11.964 -07 000000474 INF: FPGA: Recv ZSGSRD 30096
17-03-18 05:43:11.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:11.974 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:11.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30095
17-03-18 05:43:11.984 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:11.984 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.634 -07 000000591 INF: FPGA: Recv ZSGSRD 30093
17-03-18 05:43:12.634 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 640 ms to get response, and 650 ms overall
17-03-18 05:43:12.634 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.634 -07 000000629 INF: FPGA: Recv ZSGSRD 30099
17-03-18 05:43:12.644 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.644 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.644 -07 000000618 INF: FPGA: Recv ZSGSRD 30100
17-03-18 05:43:12.654 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.654 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.654 -07 000000629 INF: FPGA: Recv ZSGSRD 30097
17-03-18 05:43:12.664 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.664 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.664 -07 000000618 INF: FPGA: Recv ZSGSRD 30099
17-03-18 05:43:12.674 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.674 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:12.674 -07 000000618 INF: FPGA: Recv ZSGSRD 30096
17-03-18 05:43:12.684 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.684 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:12.684 -07 000000611 INF: FPGA: Recv ZPIEZORD 25917
17-03-18 05:43:12.694 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.2 V.
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30097 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30096 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30093 (-132.9 uncal um), Max = 30106 (-132.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30097, posNoise = 9, negNoise = 4
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: After move to -0.133669, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: Settle wait time = 1455 ms, measure time = 743 ms (allowed 150 ms), total time = 2198 ms
17-03-18 05:43:12.694 -07 000000444 INF: Z Motor: Warning: Actual position measuring time = 743 ms, longer than max expected time of 150 ms
17-03-18 05:43:12.694 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2316 ms
17-03-18 05:43:12.694 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:43:12.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:12.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:12.694 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:12.694 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:12.694 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:43:12.694 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:12.704 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:43:12.704 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:43:12.704 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:12.704 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:43:12.714 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:43:12.714 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:43:12.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:43:12.754 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:43:13.054 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:43:13.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:43:13.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:43:13.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:43:13.094 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:43:13.094 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:43:13.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:43:13.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:43:13.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:13.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:43:13.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:43:13.194 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:13.194 -07 000000437 INF: Autofocus start
17-03-18 05:43:13.194 -07 000000437 INF: MeasureProfile start
17-03-18 05:43:13.194 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:13.204 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:43:13.204 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:43:13.204 -07 000000437 INF: MeasureProfile done
17-03-18 05:43:13.204 -07 000000437 INF: X=96  Z correction [um]=0.437849
17-03-18 05:43:13.204 -07 000000437 INF: Autofocus finished
17-03-18 05:43:13.404 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:43:13.404 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:43:13.414 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133672864841715. ----------
17-03-18 05:43:13.414 -07 000000610 INF: Cycle	140	Tile	18	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:43:13.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27808, sync = True, waitForSettling = True)
17-03-18 05:43:13.414 -07 000000610 INF: Z Motor: Moving to -0.127297 mm, started at -0.133673 mm, distance = 6.38 um
17-03-18 05:43:13.414 -07 000000610 INF: FPGA: Xmit ZDACW 27808\n [Z Motor]
17-03-18 05:43:13.414 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:43:13.424 -07 000000610 INF: FPGA: 'ZDACW 27808' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:43:13.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:13.424 -07 000000437 INF: FPGA: Recv ZDACR 27808
17-03-18 05:43:13.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:43:13.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.584 -07 000000437 INF: FPGA: Recv ZSGSRD 29104
17-03-18 05:43:13.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:13.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.594 -07 000000625 INF: FPGA: Recv ZSGSRD 29106
17-03-18 05:43:13.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29106
17-03-18 05:43:13.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.614 -07 000000618 INF: FPGA: Recv ZSGSRD 29107
17-03-18 05:43:13.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.624 -07 000000444 INF: FPGA: Recv ZSGSRD 29107
17-03-18 05:43:13.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.634 -07 000000618 INF: FPGA: Recv ZSGSRD 29105
17-03-18 05:43:13.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.644 -07 000000618 INF: FPGA: Recv ZSGSRD 29107
17-03-18 05:43:13.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29108
17-03-18 05:43:13.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.664 -07 000000437 INF: FPGA: Recv ZSGSRD 29106
17-03-18 05:43:13.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:13.674 -07 000000501 INF: FPGA: Recv ZSGSRD 29101
17-03-18 05:43:13.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:13.684 -07 000000437 INF: FPGA: Recv ZPIEZORD 24617
17-03-18 05:43:13.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:13.694 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.243 V. Piezo Error = -9.8 V.
17-03-18 05:43:13.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29106 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29106 (-126.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29101 (-126.5 uncal um), Max = 29108 (-126.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:43:13.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29106, posNoise = 2, negNoise = 5
17-03-18 05:43:13.694 -07 000000610 INF: Z Motor: After move to -0.127297, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:13.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:43:13.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:13.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:13.694 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:13.694 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:13.694 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:43:13.694 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:13.694 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:43:13.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:43:13.694 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:43:13.694 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:43:13.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:43:13.694 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:43:13.694 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:13.694 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:43:13.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:43:13.704 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:43:13.714 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:43:13.714 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:43:13.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:43:13.714 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:43:13.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 27985 150\n [Camera]
17-03-18 05:43:13.914 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:43:14.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:43:14.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:43:14.354 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:14.364 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:14.364 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:43:14.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:43:14.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:43:14.364 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:14.364 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:14.364 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:43:14.554 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27985 828
17-03-18 05:43:14.694 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:43:14.754 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:43:14.754 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:43:14.754 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:14.764 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:14.764 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:43:14.764 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:43:14.764 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:43:14.764 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:14.764 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:14.774 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:43:14.914 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:43:14.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:43:14.914 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:14.914 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:43:14.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:43:14.914 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:14.924 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:14.924 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:43:14.924 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:14.924 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:43:15.104 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:43:15.104 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:43:15.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 27985 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-18 05:43:15.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:43:15.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.127306470609229. ------
17-03-18 05:43:15.234 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:15.234 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13373 mm
17-03-18 05:43:15.234 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:43:15.234 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:15.234 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29212, sync = True, waitForSettling = False)
17-03-18 05:43:15.234 -07 000000611 INF: Z Motor: Moving to -0.133724 mm, started at -0.127306 mm, distance = -6.42 um
17-03-18 05:43:15.234 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:43:15.234 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:43:15.244 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:43:15.244 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:15.244 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:43:15.254 -07 000000611 INF: FPGA: Xmit ZDACW 29212\n [Z Motor]
17-03-18 05:43:15.254 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:15.254 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:15.254 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:43:15.254 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:43:15.254 -07 000000618 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:43:15.264 -07 000000611 INF: FPGA: 'ZDACW 29212' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:43:15.264 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:43:15.274 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:43:15.284 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:15.284 -07 000000012 INF: FPGA: Recv ZDACR 29212
17-03-18 05:43:15.294 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:43:15.294 -07 000000611 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:43:15.314 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:43:15.314 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:43:15.314 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:15.314 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:43:15.324 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:43:15.324 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:15.324 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:43:15.324 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:43:15.324 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:43:15.324 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:43:15.464 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:43:15.464 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:43:15.644 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:43:15.644 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:43:15.674 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:15.684 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:43:15.684 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:43:15.684 -07 000000618 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:15.684 -07 000000618 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:43:15.684 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:43:16.174 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.019446,
17-03-18 05:43:16.634 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:16.634 -07 000000444 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:43:16.644 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:16.644 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:16.664 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:43:16.664 -07 000000618 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:43:16.664 -07 000000618 INF: Y Motor: Moved to 74.8315 after 1423 ms (table move)
17-03-18 05:43:16.664 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133724 mm (DAC = 29212)
17-03-18 05:43:16.664 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.664 -07 000000591 INF: FPGA: Recv ZSGSRD 30107
17-03-18 05:43:16.674 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:43:16.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.674 -07 000000591 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:43:16.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.684 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:43:16.694 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.694 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.694 -07 000000487 INF: FPGA: Recv ZSGSRD 30106
17-03-18 05:43:16.704 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.704 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.704 -07 000000487 INF: FPGA: Recv ZSGSRD 30107
17-03-18 05:43:16.714 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.714 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.714 -07 000000444 INF: FPGA: Recv ZSGSRD 30107
17-03-18 05:43:16.724 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.724 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.724 -07 000000444 INF: FPGA: Recv ZSGSRD 30117
17-03-18 05:43:16.734 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.734 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.734 -07 000000611 INF: FPGA: Recv ZSGSRD 30109
17-03-18 05:43:16.744 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.744 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.744 -07 000000444 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:43:16.754 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.754 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:16.754 -07 000000611 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:43:16.764 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.764 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:16.764 -07 000000444 INF: FPGA: Recv ZPIEZORD 25883
17-03-18 05:43:16.774 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.3 V.
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30106 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30106 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30101 (-132.9 uncal um), Max = 30117 (-133.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30106, posNoise = 11, negNoise = 5
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: After move to -0.133724, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-18 05:43:16.774 -07 000000474 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:43:16.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 139. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:43:16.824 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 05:43:16.824 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:43:16.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:16.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:16.824 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:16.824 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:43:16.824 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:16.824 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:16.824 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:43:16.824 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:43:16.824 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:43:16.834 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:43:16.834 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:43:16.834 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:43:16.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:43:16.884 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:43:17.184 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:43:17.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:43:17.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:43:17.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:43:17.224 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:43:17.224 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:43:17.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:43:17.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:43:17.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:17.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:43:17.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:43:17.324 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:43:17.324 -07 000000474 INF: Autofocus start
17-03-18 05:43:17.324 -07 000000474 INF: MeasureProfile start
17-03-18 05:43:17.324 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:43:17.334 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:43:17.334 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:43:17.334 -07 000000474 INF: MeasureProfile done
17-03-18 05:43:17.334 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:43:17.334 -07 000000474 INF: Autofocus finished
17-03-18 05:43:17.534 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:43:17.534 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:43:17.534 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.13373068275099. ----------
17-03-18 05:43:17.534 -07 000000610 INF: Cycle	140	Tile	19	Exposure Settings		A	443	G	213	T	213	C	443
17-03-18 05:43:17.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27707, sync = True, waitForSettling = True)
17-03-18 05:43:17.544 -07 000000610 INF: Z Motor: Moving to -0.126835 mm, started at -0.133731 mm, distance = 6.90 um
17-03-18 05:43:17.544 -07 000000610 INF: FPGA: Xmit ZDACW 27707\n [Z Motor]
17-03-18 05:43:17.544 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:43:17.554 -07 000000610 INF: FPGA: 'ZDACW 27707' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:43:17.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:43:17.554 -07 000000487 INF: FPGA: Recv ZDACR 27707
17-03-18 05:43:17.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:43:17.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.714 -07 000000618 INF: FPGA: Recv ZSGSRD 29031
17-03-18 05:43:17.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.724 -07 000000618 INF: FPGA: Recv ZSGSRD 29034
17-03-18 05:43:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.734 -07 000000611 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:43:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.744 -07 000000625 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:43:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.754 -07 000000625 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:43:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.764 -07 000000629 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:43:17.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.774 -07 000000629 INF: FPGA: Recv ZSGSRD 29034
17-03-18 05:43:17.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.784 -07 000000618 INF: FPGA: Recv ZSGSRD 29030
17-03-18 05:43:17.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.794 -07 000000618 INF: FPGA: Recv ZSGSRD 29036
17-03-18 05:43:17.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:43:17.804 -07 000000618 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:43:17.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:43:17.814 -07 000000618 INF: FPGA: Recv ZPIEZORD 24463
17-03-18 05:43:17.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:43:17.824 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -10.0 V.
17-03-18 05:43:17.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29033 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29033 (-126.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29030 (-126.0 uncal um), Max = 29036 (-126.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:43:17.824 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29033, posNoise = 3, negNoise = 3
17-03-18 05:43:17.824 -07 000000610 INF: Z Motor: After move to -0.126835, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:43:17.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:43:17.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:43:17.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:43:17.824 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:43:17.824 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:43:17.824 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:43:17.824 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:43:17.824 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:43:17.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:43:17.824 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:43:17.824 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:43:17.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:43:17.824 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:43:17.834 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:43:17.834 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:43:17.834 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:43:17.834 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:43:17.844 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:43:17.844 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:43:17.844 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:43:17.844 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:43:17.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 27884 150\n [Camera]
17-03-18 05:43:18.044 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:43:18.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:43:18.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:43:18.494 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:18.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:43:18.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:43:18.494 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:18.494 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:18.494 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:43:18.504 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:18.504 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:43:18.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27884 828
17-03-18 05:43:18.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:43:18.894 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:43:18.894 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:43:18.894 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:18.894 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:43:18.894 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:43:18.894 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:18.894 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:43:18.894 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:18.904 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:18.914 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:43:19.044 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-18 05:43:19.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-18 05:43:19.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:43:19.054 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-18 05:43:19.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-18 05:43:19.054 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:43:19.054 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:43:19.054 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:43:19.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:43:19.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:43:19.244 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-18 05:43:19.244 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:43:19.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 27884 150' command took 2 ms to send, 1381 ms to get response, and 1391 ms overall
17-03-18 05:43:19.444 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:43:19.444 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:43:19.444 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:19.444 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:19.454 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:43:19.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:43:19.454 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:43:19.454 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:43:19.454 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:43:19.464 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:43:19.464 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:43:19.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 05:43:19.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:43:19.544 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:43:19.554 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 05:43:19.554 -07 000000610 INF: Imaging Cycle 140: ScanTilesCommand Cycle 140 time end. Duration was 168876 ms.
17-03-18 05:43:19.554 -07 000000610 INF: =================== Cycle #140 ===================
17-03-18 05:43:19.554 -07 000000610 INF: ===================  ===================
17-03-18 05:43:19.554 -07 000000591 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:43:19.564 -07 000000487 INF: FPGA: Recv EXLED1ADCR 20
17-03-18 05:43:19.564 -07 000000591 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:43:19.564 -07 000000591 INF: GreenLED: Using Green data: Photodiode ADC 20 --> 0.0 mW (old method), or 1.4 mW (new method). Difference = 1.4 mW
17-03-18 05:43:19.564 -07 000000591 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 140, FrontChillerTemperature: 4.019446, FrontChillerHeatSinkTemperature: 0.664368, AmbientTemperature: 18.71265, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.42499, GreenLEDSensorTemperature: 27.43762, PhotodiodePowerAdcGreen: 20, PhotodiodePowerMwGreen: 1.379937
17-03-18 05:43:19.674 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.