17-03-18 05:43:19.724 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:19.724 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:43:19.724 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 05:43:19.724 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:19.734 -07 000000591 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:43:19.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:19.744 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:19.744 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:43:19.744 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:43:19.744 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:43:19.854 -07 000000487 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:43:19.854 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 05:43:19.854 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:43:19.854 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:43:19.854 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-18 05:43:21.534 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.023489,
17-03-18 05:43:21.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:21.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1885, R2=1960, Total=3845. Warn if over 250 bubbles per interval.
17-03-18 05:43:22.854 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:43:22.854 -07 000000437 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:43:22.864 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:43:22.864 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:43:22.894 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:43:22.894 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:43:22.894 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3161 ms
17-03-18 05:43:22.894 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 60° ===================
17-03-18 05:43:22.894 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:43:22.894 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:43:22.904 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:43:22.904 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:43:22.904 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:43:22.904 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 05:43:22.914 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:43:22.914 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 60° ===================
17-03-18 05:43:22.914 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:22.914 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:43:22.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:22.944 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:43:22.944 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:43:22.944 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:43:23.244 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:43:23.264 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:43:23.264 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:43:23.314 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:23.334 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:43:23.334 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:43:23.434 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:23.434 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:43:23.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:23.464 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:43:23.464 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:43:23.464 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:43:23.594 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:43:23.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:26.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:26.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:26.794 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:43:26.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:26.894 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.008536,
17-03-18 05:43:27.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:27.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:27.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:27.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:27.694 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:43:27.694 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:27.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:27.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:43:27.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:43:27.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:28.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:43:28.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:43:28.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:43:28.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:43:28.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:28.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:28.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:28.634 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:43:28.634 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:29.854 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:43:29.854 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:43:29.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:29.874 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:43:29.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:43:29.874 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:43:30.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:43:30.034 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:43:30.034 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:43:30.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:30.104 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:43:30.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:43:30.204 -07 000000610 INF: =================== Cycle #141, Pumping Reagent CMS (4) ===================
17-03-18 05:43:30.204 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:43:30.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:30.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:43:30.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:43:30.234 -07 000000610 INF: =================== Cycle #141, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:43:30.364 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:43:30.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:31.794 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:31.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:31.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:31.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:32.254 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.008536,
17-03-18 05:43:32.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:32.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:32.324 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:43:32.324 -07 000000610 INF: =================== Cycle #141, Pumping Reagent CMS (4) ===================
17-03-18 05:43:32.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:32.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:43:32.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:43:32.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:32.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:43:32.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:43:32.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:43:32.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:43:32.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:33.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:33.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:33.264 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:43:33.264 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:34.484 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:43:34.484 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:43:34.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:34.504 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:43:34.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:43:34.504 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:43:34.654 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:43:34.674 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:43:34.674 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:43:34.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:34.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:43:34.744 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:43:34.844 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:34.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:43:34.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:34.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:43:34.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:43:34.874 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:43:35.004 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:43:35.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:35.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:35.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:35.944 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:43:35.944 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:36.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:36.104 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:43:36.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:43:36.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:36.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:43:36.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:43:36.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:43:36.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:43:36.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:36.794 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:36.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:36.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:36.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:36.884 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:43:36.884 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:36.884 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:43:36.884 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:43:37.634 -07 000000474 INF: WaitCommand(10000) start
17-03-18 05:43:38.104 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:43:38.104 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 05:43:38.174 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:43:38.174 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:43:38.304 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:43:38.344 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:38.474 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.003063,
17-03-18 05:43:39.874 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:39.904 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:40.324 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:40.354 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:40.354 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:43:40.354 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:43:40.354 -07 000000501 INF: ===================  ===================
17-03-18 05:43:41.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:41.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:44.544 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.009895,
17-03-18 05:43:46.794 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:46.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:47.644 -07 000000474 INF: WaitCommand(10000) end
17-03-18 05:43:47.644 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:47.644 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:43:47.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:47.674 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:43:47.674 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:43:47.674 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:43:47.804 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:43:47.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:49.904 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.977204,
17-03-18 05:43:51.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:51.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:53.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:54.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:54.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:54.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:54.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:54.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:55.264 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.005817,
17-03-18 05:43:55.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:55.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:43:55.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:55.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:55.804 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:43:55.804 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:43:55.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:55.964 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:43:55.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:43:56.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:56.124 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:43:56.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:43:56.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:43:56.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:43:56.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:56.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:43:56.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:43:56.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:43:56.744 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:43:56.794 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:43:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1961, Total=3847. Warn if over 250 bubbles per interval.
17-03-18 05:43:57.964 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:43:57.964 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:43:57.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:57.984 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:43:57.984 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:43:57.984 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:43:58.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:43:58.214 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:43:58.214 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:43:58.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:43:58.284 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:43:58.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:43:58.384 -07 000000610 INF: =================== Cycle #141, Pumping Reagent IMT (1) ===================
17-03-18 05:43:58.384 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:43:58.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:43:58.424 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:43:58.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:43:58.424 -07 000000610 INF: =================== Cycle #141, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:43:58.554 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:43:58.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:00.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:00.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:00.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:00.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:00.514 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:44:00.514 -07 000000610 INF: =================== Cycle #141, Pumping Reagent IMT (1) ===================
17-03-18 05:44:00.624 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.000345,
17-03-18 05:44:00.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:00.674 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:44:00.674 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:44:00.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:00.834 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:44:00.834 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:44:00.834 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:44:00.964 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:44:00.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:01.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:01.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:01.454 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:44:01.454 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:44:01.794 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:44:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:02.674 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:44:02.674 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:44:02.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:44:02.694 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:44:02.694 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:44:02.694 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:44:02.924 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:44:02.944 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:44:02.944 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:44:02.994 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:44:03.014 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:44:03.014 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:44:03.114 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:44:03.114 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:44:03.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:03.144 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:44:03.144 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:44:03.144 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:44:03.274 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:44:03.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:04.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:04.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:04.214 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:44:04.214 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:44:04.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:04.374 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:44:04.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:44:04.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:04.534 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:44:04.534 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:44:04.534 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:44:04.664 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:44:04.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:05.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:05.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:05.154 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:44:05.154 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:44:05.154 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 65° ===================
17-03-18 05:44:05.154 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:44:05.154 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:44:05.154 -07 000000487 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:44:05.164 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:44:05.164 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:44:05.164 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 05:44:05.174 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:44:05.174 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 65° ===================
17-03-18 05:44:05.174 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:44:05.174 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:44:05.984 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.001704,
17-03-18 05:44:06.794 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:11.344 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.994908,
17-03-18 05:44:12.314 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:12.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:16.704 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.990831,
17-03-18 05:44:16.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:21.794 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:21.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:22.064 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.999021,
17-03-18 05:44:26.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:26.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:27.424 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.000345,
17-03-18 05:44:31.794 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:31.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:32.784 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.973092,
17-03-18 05:44:35.184 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:44:35.184 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:44:35.184 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:44:35.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:35.314 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:44:35.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:44:35.314 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:44:35.444 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:44:35.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:36.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:36.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:36.054 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:44:36.054 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:44:36.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:36.214 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:44:36.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:44:36.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:44:36.374 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:44:36.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:44:36.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:44:36.504 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:44:36.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:36.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:36.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:36.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:36.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:36.994 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:44:36.994 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:44:36.994 -07 000000611 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:44:36.994 -07 000000474 INF: WaitCommand(30000) start
17-03-18 05:44:36.994 -07 000000611 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:44:38.144 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.981281,
17-03-18 05:44:38.214 -07 000000611 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:44:38.214 -07 000000611 INF: LanePump: Xmit /1?\r
17-03-18 05:44:38.244 -07 000000611 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:44:38.244 -07 000000611 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:44:38.374 -07 000000611 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:44:38.414 -07 000000611 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:40.754 -07 000000611 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:40.784 -07 000000611 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:44:41.204 -07 000000611 INF: LanePump: Xmit /1Q\r
17-03-18 05:44:41.234 -07 000000611 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:44:41.234 -07 000000611 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:44:41.234 -07 000000611 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:44:41.234 -07 000000611 INF: ===================  ===================
17-03-18 05:44:41.794 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:41.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:43.624 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.983999,
17-03-18 05:44:46.794 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:46.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:48.984 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.985358,
17-03-18 05:44:51.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:51.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:54.344 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.000345,
17-03-18 05:44:56.794 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:44:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:44:59.704 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.981281,
17-03-18 05:45:01.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:45:05.064 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.974486,
17-03-18 05:45:06.794 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1886, R2=1962, Total=3848. Warn if over 250 bubbles per interval.
17-03-18 05:45:07.004 -07 000000474 INF: WaitCommand(30000) end
17-03-18 05:45:07.004 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 22° ===================
17-03-18 05:45:07.004 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:45:07.004 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:45:07.004 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:45:07.014 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:45:07.014 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:45:07.014 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 05:45:07.024 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:07.024 -07 000000610 INF: =================== Cycle #141, Flow Cell Temp 22° ===================
17-03-18 05:45:07.024 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:45:07.024 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:45:07.024 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:45:07.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:07.064 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:45:07.064 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:45:07.064 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:45:07.194 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:45:07.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:10.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:10.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:10.424 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.988112,
17-03-18 05:45:10.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:10.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:11.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:11.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:11.294 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:45:11.294 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:45:11.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:11.454 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:45:11.454 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:45:11.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:11.614 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:45:11.614 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:45:11.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:45:11.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:45:11.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:11.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 6
17-03-18 05:45:11.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=6, R2=7, Total=13. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:12.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:12.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:12.234 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:45:12.234 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:45:13.454 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:45:13.454 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:45:13.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:13.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:45:13.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:45:13.474 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:45:13.624 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:45:13.644 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:45:13.644 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:45:13.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:13.714 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:45:13.714 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:45:13.814 -07 000000610 INF: =================== Cycle #141, Pumping Reagent USM (2) ===================
17-03-18 05:45:13.814 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:45:13.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:13.844 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:45:13.844 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:45:13.844 -07 000000610 INF: =================== Cycle #141, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:45:13.974 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:45:14.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:15.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:15.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:15.784 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.003063,
17-03-18 05:45:15.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:15.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:15.934 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:45:15.934 -07 000000610 INF: =================== Cycle #141, Pumping Reagent USM (2) ===================
17-03-18 05:45:16.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:16.094 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:45:16.094 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:45:16.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:16.254 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:45:16.254 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:45:16.254 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:45:16.384 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:45:16.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:16.794 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:16.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:16.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:16.874 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:45:16.874 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:45:18.094 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:45:18.094 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:45:18.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:18.114 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:45:18.114 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:45:18.114 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:45:18.264 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:45:18.284 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:45:18.284 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:45:18.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:18.354 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:45:18.354 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:45:18.454 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:45:18.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:45:18.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:18.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:45:18.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:45:18.484 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:45:18.614 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:45:18.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:19.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:19.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:19.554 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:45:19.554 -07 000000610 INF: =================== Cycle #141, Pumping Reagent PR2 (3) ===================
17-03-18 05:45:19.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:19.714 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:45:19.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:45:19.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:45:19.874 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:45:19.874 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:45:19.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:45:20.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:45:20.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:20.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:20.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:20.494 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:45:20.494 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:45:20.494 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:45:20.494 -07 000000012 INF: WaitCommand(10000) start
17-03-18 05:45:20.494 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:45:21.144 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.974486,
17-03-18 05:45:21.714 -07 000000479 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:45:21.714 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 05:45:21.744 -07 000000479 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:45:21.744 -07 000000479 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:45:21.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:21.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:21.874 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:45:21.914 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:23.444 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:23.474 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:45:23.894 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 05:45:23.924 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:45:23.924 -07 000000479 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:45:23.924 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:45:23.924 -07 000000479 INF: ===================  ===================
17-03-18 05:45:26.504 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.977204,
17-03-18 05:45:26.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:26.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:30.504 -07 000000012 INF: WaitCommand(10000) end
17-03-18 05:45:30.504 -07 000000610 INF: =================== Cycle #141, Imaging ===================
17-03-18 05:45:30.504 -07 000000610 INF: Imaging Cycle 141: ScanTilesCommand Cycle 141 time start.
17-03-18 05:45:30.504 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:45:30.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:30.534 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:45:30.534 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:45:30.534 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:45:30.834 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:45:30.854 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:45:30.854 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:45:30.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:45:30.924 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:45:30.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:30.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:30.924 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:45:30.924 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:30.924 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:45:30.934 -07 000000444 INF: FPGA: Recv EXLED1ON 
17-03-18 05:45:30.934 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:30.934 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:45:30.934 -07 000000444 INF: FPGA: Recv EXLED1ADCR 23153
17-03-18 05:45:30.944 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:30.944 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23153 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 05:45:30.944 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:45:30.944 -07 000000012 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:45:30.954 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:30.954 -07 000000438 INF: RedLED: LED was on for 19 ms
17-03-18 05:45:30.954 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 05:45:30.954 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:45:30.954 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:30.954 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:45:30.954 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-18 05:45:30.964 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:45:30.964 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:45:30.964 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 05:45:30.974 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:30.974 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 05:45:30.974 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:45:30.974 -07 000000501 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:45:30.984 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:30.984 -07 000000438 INF: GreenLED: LED was on for 19 ms
17-03-18 05:45:30.984 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:45:30.984 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:45:30.984 -07 000000444 INF: FPGA: Recv EMCUR 
17-03-18 05:45:30.994 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:30.994 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:45:31.494 -07 000000479 INF: FPGA: Recv EMOUT
17-03-18 05:45:31.494 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:45:31.494 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:45:31.494 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 05:45:31.504 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:31.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:45:31.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126837503122881. ------
17-03-18 05:45:31.504 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:31.504 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 05:45:31.504 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:31.504 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:45:31.504 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 05:45:31.504 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-18 05:45:31.504 -07 000000444 INF: Z Motor: Moving to -0.178512 mm, started at -0.126838 mm, distance = -51.67 um
17-03-18 05:45:31.504 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:31.514 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:45:31.514 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:31.514 -07 000000487 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:45:31.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:45:31.524 -07 000000444 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-18 05:45:31.524 -07 000000501 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:31.524 -07 000000501 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:45:31.524 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:45:31.524 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:45:31.534 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:45:31.534 -07 000000444 INF: FPGA: 'ZDACW 38996' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:45:31.544 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:45:31.554 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:31.554 -07 000000479 INF: FPGA: Recv ZDACR 38996
17-03-18 05:45:31.564 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:45:31.564 -07 000000444 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:45:31.734 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:45:31.734 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:45:31.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:31.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:31.884 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.999021,
17-03-18 05:45:33.224 -07 000000479 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 05:45:33.224 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 05:45:33.224 -07 000000501 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:45:33.224 -07 000000501 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:45:33.224 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 05:45:36.074 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:36.074 -07 000000461 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:45:36.084 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:36.084 -07 000000501 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:36.114 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:36.114 -07 000000501 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:45:36.114 -07 000000501 INF: Y Motor: Moved to 59.9097 after 4606 ms
17-03-18 05:45:36.114 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-18 05:45:36.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.124 -07 000000501 INF: FPGA: Recv ZSGSRD 37084
17-03-18 05:45:36.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:36.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.124 -07 000000501 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:45:36.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.134 -07 000000501 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:45:36.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.144 -07 000000501 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:45:36.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.154 -07 000000501 INF: FPGA: Recv ZSGSRD 37078
17-03-18 05:45:36.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.164 -07 000000501 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:45:36.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.174 -07 000000501 INF: FPGA: Recv ZSGSRD 37078
17-03-18 05:45:36.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.184 -07 000000626 INF: FPGA: Recv ZSGSRD 37081
17-03-18 05:45:36.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.194 -07 000000608 INF: FPGA: Recv ZSGSRD 37081
17-03-18 05:45:36.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:36.204 -07 000000608 INF: FPGA: Recv ZSGSRD 37073
17-03-18 05:45:36.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.214 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:36.214 -07 000000608 INF: FPGA: Recv ZPIEZORD 33291
17-03-18 05:45:36.224 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.4 V.
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37078 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37071 (-177.6 uncal um), Max = 37084 (-177.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37078, posNoise = 6, negNoise = 7
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: After move to -0.178512, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: Settle wait time = 4609 ms, measure time = 103 ms (allowed 150 ms), total time = 4712 ms
17-03-18 05:45:36.224 -07 000000625 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:45:36.274 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 05:45:36.274 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:36.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:36.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:36.274 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:36.274 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:36.274 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:45:36.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:36.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:45:36.274 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:45:36.304 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:45:36.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:45:36.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:45:36.304 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:45:36.324 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:45:36.324 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 05:45:36.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:45:36.364 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:45:36.664 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:45:36.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:45:36.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:45:36.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:45:36.704 -07 000000561 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:45:36.704 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:45:36.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 05:45:36.794 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:36.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 05:45:36.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:36.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:45:36.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:45:36.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:36.814 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:36.814 -07 000000479 INF: Image SNR check: start
17-03-18 05:45:36.814 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:36.824 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:36.824 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:45:36.824 -07 000000479 INF: Image SNR check: pass  [peak (Max-Min)=126.00]
17-03-18 05:45:36.824 -07 000000479 INF: Autofocus start
17-03-18 05:45:36.824 -07 000000479 INF: MeasureProfile start
17-03-18 05:45:36.834 -07 000000479 INF: MeasureProfile done
17-03-18 05:45:36.834 -07 000000479 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:45:36.834 -07 000000479 INF: Autofocus finished
17-03-18 05:45:37.024 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:45:37.024 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:45:37.024 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178520289803348. ----------
17-03-18 05:45:37.024 -07 000000610 INF: Cycle	141	Tile	1	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:37.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37476, sync = True, waitForSettling = True)
17-03-18 05:45:37.034 -07 000000610 INF: Z Motor: Moving to -0.171554 mm, started at -0.178520 mm, distance = 6.97 um
17-03-18 05:45:37.034 -07 000000610 INF: FPGA: Xmit ZDACW 37476\n [Z Motor]
17-03-18 05:45:37.034 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:45:37.044 -07 000000610 INF: FPGA: 'ZDACW 37476' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:37.044 -07 000000438 INF: FPGA: Recv ZDACR 37476
17-03-18 05:45:37.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:37.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.204 -07 000000461 INF: FPGA: Recv ZSGSRD 35994
17-03-18 05:45:37.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:37.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.214 -07 000000561 INF: FPGA: Recv ZSGSRD 35995
17-03-18 05:45:37.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.224 -07 000000438 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:45:37.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.244 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.027603,
17-03-18 05:45:37.244 -07 000000438 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:45:37.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:45:37.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.274 -07 000000461 INF: FPGA: Recv ZSGSRD 35994
17-03-18 05:45:37.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:45:37.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36000
17-03-18 05:45:37.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:45:37.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.304 -07 000000461 INF: FPGA: Recv ZSGSRD 35995
17-03-18 05:45:37.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.324 -07 000000438 INF: FPGA: Recv ZSGSRD 35999
17-03-18 05:45:37.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:45:37.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.334 -07 000000461 INF: FPGA: Recv ZSGSRD 35999
17-03-18 05:45:37.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:37.344 -07 000000561 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:45:37.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:37.354 -07 000000438 INF: FPGA: Recv ZPIEZORD 31841
17-03-18 05:45:37.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:37.364 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -9.2 V.
17-03-18 05:45:37.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35997 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35997 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35994 (-170.7 uncal um), Max = 36002 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:45:37.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35997, posNoise = 5, negNoise = 3
17-03-18 05:45:37.364 -07 000000610 INF: Z Motor: After move to -0.171554, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:37.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-18 05:45:37.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:37.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:37.364 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:37.364 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:37.364 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:37.364 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:37.364 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:37.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:37.364 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:37.364 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:37.364 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:45:37.364 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:45:37.364 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:45:37.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:37.384 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:45:37.384 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:45:37.384 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 05:45:37.384 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:37.394 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:45:37.394 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:37.404 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:45:37.404 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 05:45:37.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37652 150\n [Camera]
17-03-18 05:45:37.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:45:38.054 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:45:38.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:45:38.054 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:38.054 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:38.054 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:45:38.054 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:45:38.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:45:38.054 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:38.054 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:38.054 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:45:38.244 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37652 830
17-03-18 05:45:38.394 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:38.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:45:38.454 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:45:38.454 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:38.464 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:45:38.464 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:45:38.464 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:38.464 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:45:38.464 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:45:38.464 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:45:38.474 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:45:38.614 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1195
17-03-18 05:45:38.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1195
17-03-18 05:45:38.614 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:38.734 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1196
17-03-18 05:45:38.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1196
17-03-18 05:45:38.734 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:38.734 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:38.734 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:45:38.734 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:38.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:45:38.804 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:45:38.804 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:38.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37652 150' command took 2 ms to send, 1391 ms to get response, and 1394 ms overall
17-03-18 05:45:38.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:45:38.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171575716478104. ------
17-03-18 05:45:38.804 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:38.804 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17780 mm
17-03-18 05:45:38.804 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:38.814 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:45:38.814 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:45:38.814 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:38.814 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:38.814 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:45:38.814 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-18 05:45:38.814 -07 000000626 INF: Z Motor: Moving to -0.177803 mm, started at -0.171576 mm, distance = -6.23 um
17-03-18 05:45:38.814 -07 000000561 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:45:38.824 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:38.824 -07 000000501 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:38.824 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:38.824 -07 000000501 INF: Y Motor: Moving 1333 steps0
17-03-18 05:45:38.824 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:45:38.834 -07 000000626 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-18 05:45:38.834 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:45:38.844 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:38.844 -07 000000626 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:45:38.854 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:38.854 -07 000000012 INF: FPGA: Recv ZDACR 38841
17-03-18 05:45:38.864 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:45:38.864 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:45:39.024 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:45:39.024 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 05:45:39.134 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:45:39.134 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:45:39.134 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:39.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:45:39.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:45:39.134 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:39.134 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:45:39.134 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 05:45:39.134 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:39.144 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:45:39.214 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:45:39.214 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:45:39.254 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:39.264 -07 000000444 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:45:39.264 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:45:39.264 -07 000000501 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:39.264 -07 000000501 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:45:39.264 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 05:45:40.214 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:40.214 -07 000000438 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:45:40.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:40.224 -07 000000501 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:40.254 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.011162, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:40.254 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:45:40.254 -07 000000501 INF: Y Motor: Moved to 60.7314 after 1443 ms (table move)
17-03-18 05:45:40.254 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-18 05:45:40.254 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.264 -07 000000501 INF: FPGA: Recv ZSGSRD 36959
17-03-18 05:45:40.264 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:40.264 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.264 -07 000000501 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:45:40.274 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.274 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.274 -07 000000501 INF: FPGA: Recv ZSGSRD 36969
17-03-18 05:45:40.284 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.284 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.284 -07 000000501 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:45:40.294 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.294 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.294 -07 000000501 INF: FPGA: Recv ZSGSRD 36958
17-03-18 05:45:40.304 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.304 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36963
17-03-18 05:45:40.314 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.314 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36976
17-03-18 05:45:40.324 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:45:40.324 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.324 -07 000000626 INF: FPGA: Recv ZSGSRD 36971
17-03-18 05:45:40.334 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.334 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.334 -07 000000561 INF: FPGA: Recv ZSGSRD 36963
17-03-18 05:45:40.344 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.344 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:40.344 -07 000000561 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:45:40.354 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.354 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:40.354 -07 000000561 INF: FPGA: Recv ZPIEZORD 33177
17-03-18 05:45:40.364 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36958 (-176.9 uncal um), Max = 36976 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 9, negNoise = 9
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: After move to -0.177803, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-18 05:45:40.364 -07 000000487 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:45:40.414 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 05:45:40.414 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:40.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:40.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:40.414 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:40.414 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:40.414 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:45:40.414 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:40.424 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:40.424 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:45:40.424 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:45:40.424 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:45:40.434 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:45:40.434 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:45:40.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:45:40.484 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:45:40.784 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:45:40.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:45:40.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:45:40.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 05:45:40.824 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:45:40.824 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:45:40.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:45:40.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:45:40.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:40.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:45:40.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 05:45:41.024 -07 000000487 INF: Autofocus start
17-03-18 05:45:41.024 -07 000000487 INF: MeasureProfile start
17-03-18 05:45:41.024 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:41.024 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:41.034 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:41.034 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:45:41.034 -07 000000487 INF: MeasureProfile done
17-03-18 05:45:41.034 -07 000000487 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:45:41.034 -07 000000487 INF: Autofocus finished
17-03-18 05:45:41.234 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:45:41.234 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:45:41.234 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7314453125, Z-position -0.177807202255612. ----------
17-03-18 05:45:41.234 -07 000000610 INF: Cycle	141	Tile	2	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:41.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 05:45:41.244 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.177807 mm, distance = 6.72 um
17-03-18 05:45:41.244 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 05:45:41.244 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:45:41.254 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:41.254 -07 000000438 INF: FPGA: Recv ZDACR 37374
17-03-18 05:45:41.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:41.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.414 -07 000000438 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:45:41.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:41.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.424 -07 000000479 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:45:41.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.434 -07 000000479 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:45:41.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.444 -07 000000479 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:45:41.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.454 -07 000000479 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:45:41.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.464 -07 000000438 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:45:41.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:45:41.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.484 -07 000000438 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:45:41.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.494 -07 000000438 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:45:41.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:41.504 -07 000000438 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:45:41.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:41.514 -07 000000479 INF: FPGA: Recv ZPIEZORD 31794
17-03-18 05:45:41.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:41.524 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.1 V.
17-03-18 05:45:41.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35923 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35924 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35917 (-170.2 uncal um), Max = 35927 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:45:41.524 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35923, posNoise = 4, negNoise = 6
17-03-18 05:45:41.524 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:41.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:45:41.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:41.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:41.524 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:41.524 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:41.524 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:41.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:41.524 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:41.524 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:41.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:41.524 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:41.524 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:45:41.524 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:41.534 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:45:41.534 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:41.534 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:45:41.534 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:41.534 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:45:41.534 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:45:41.544 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:45:41.544 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:45:41.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37550 150\n [Camera]
17-03-18 05:45:41.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:45:41.794 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:41.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:42.184 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:45:42.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:45:42.194 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:42.194 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:45:42.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:45:42.194 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:42.194 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:42.194 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:45:42.194 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:42.194 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:45:42.384 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37550 830
17-03-18 05:45:42.534 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:42.584 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:45:42.584 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:45:42.584 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:42.594 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:42.594 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:45:42.594 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:45:42.594 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:45:42.594 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:42.594 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:42.604 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:45:42.644 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.997626,
17-03-18 05:45:42.744 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:45:42.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:45:42.854 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:45:42.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:45:42.854 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:42.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:42.864 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:42.864 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:45:42.864 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:42.864 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 05:45:42.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:45:42.934 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:42.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37550 150' command took 2 ms to send, 1388 ms to get response, and 1394 ms overall
17-03-18 05:45:42.944 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171830
17-03-18 05:45:42.944 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17183 mm
17-03-18 05:45:42.944 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:42.944 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:45:42.944 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37536, sync = True, waitForSettling = False)
17-03-18 05:45:42.944 -07 000000608 INF: Z Motor: Moving to -0.171829 mm, started at -0.171100 mm, distance = -0.73 um
17-03-18 05:45:42.944 -07 000000608 INF: FPGA: Xmit ZDACW 37536\n [Z Motor]
17-03-18 05:45:42.944 -07 000000444 INF: Y Motor: Moving to 61.5726 mm, started at 60.7314 mm, delta = 0.8412 mm
17-03-18 05:45:42.944 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:45:42.954 -07 000000608 INF: FPGA: 'ZDACW 37536' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:45:42.954 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:42.954 -07 000000611 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:45:42.964 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:45:42.964 -07 000000444 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:42.964 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:42.964 -07 000000012 INF: FPGA: Recv ZDACR 37536
17-03-18 05:45:42.964 -07 000000444 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:42.964 -07 000000444 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:45:42.974 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:42.974 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:45:42.974 -07 000000608 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 05:45:43.264 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:45:43.264 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:45:43.264 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:43.264 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:45:43.274 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:45:43.274 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:43.274 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:45:43.274 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:45:43.274 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:45:43.284 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 05:45:43.344 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:45:43.344 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:45:43.394 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:43.404 -07 000000461 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:45:43.404 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:43.404 -07 000000444 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:43.404 -07 000000444 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:45:43.404 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.191 mm/sec
17-03-18 05:45:44.354 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:44.354 -07 000000461 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:45:44.364 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:44.364 -07 000000444 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:44.394 -07 000000444 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:44.394 -07 000000444 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:45:44.394 -07 000000444 INF: Y Motor: Moved to 61.5625 after 1450 ms (table move)
17-03-18 05:45:44.394 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171829 mm (DAC = 37536)
17-03-18 05:45:44.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36037
17-03-18 05:45:44.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:45:44.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.404 -07 000000444 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:45:44.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.414 -07 000000444 INF: FPGA: Recv ZSGSRD 36036
17-03-18 05:45:44.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:45:44.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:45:44.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.444 -07 000000444 INF: FPGA: Recv ZSGSRD 36038
17-03-18 05:45:44.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.454 -07 000000444 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:45:44.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.464 -07 000000444 INF: FPGA: Recv ZSGSRD 36033
17-03-18 05:45:44.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:45:44.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.484 -07 000000444 INF: FPGA: Recv ZSGSRD 36040
17-03-18 05:45:44.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:44.494 -07 000000444 INF: FPGA: Recv ZPIEZORD 31937
17-03-18 05:45:44.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.1 V.
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36038 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36039 (-171.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36033 (-170.9 uncal um), Max = 36040 (-171.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36038, posNoise = 2, negNoise = 5
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: After move to -0.171829, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 104 ms (allowed 150 ms), total time = 1556 ms
17-03-18 05:45:44.504 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:45:44.554 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 05:45:44.554 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:44.554 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171839109175916. ----------
17-03-18 05:45:44.554 -07 000000610 INF: Cycle	141	Tile	3	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:44.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37359, sync = True, waitForSettling = True)
17-03-18 05:45:44.554 -07 000000610 INF: Z Motor: Moving to -0.171019 mm, started at -0.171839 mm, distance = 0.82 um
17-03-18 05:45:44.554 -07 000000610 INF: FPGA: Xmit ZDACW 37359\n [Z Motor]
17-03-18 05:45:44.554 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:45:44.564 -07 000000610 INF: FPGA: 'ZDACW 37359' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:45:44.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:44.564 -07 000000608 INF: FPGA: Recv ZDACR 37359
17-03-18 05:45:44.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.724 -07 000000438 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:45:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.734 -07 000000438 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:45:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.744 -07 000000438 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:45:44.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.754 -07 000000012 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:45:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.764 -07 000000012 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:45:44.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.774 -07 000000012 INF: FPGA: Recv ZSGSRD 35907
17-03-18 05:45:44.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.784 -07 000000012 INF: FPGA: Recv ZSGSRD 35911
17-03-18 05:45:44.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.794 -07 000000012 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:45:44.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.804 -07 000000012 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:45:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:44.814 -07 000000012 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:45:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:44.824 -07 000000012 INF: FPGA: Recv ZPIEZORD 31758
17-03-18 05:45:44.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:44.834 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 05:45:44.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35907 (-170.1 uncal um), Max = 35918 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:45:44.834 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 5, negNoise = 6
17-03-18 05:45:44.834 -07 000000610 INF: Z Motor: After move to -0.171019, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:44.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:45:44.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:44.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:44.834 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:44.834 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:44.834 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:44.834 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:44.844 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:44.844 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:44.844 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:45:44.844 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:44.854 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:45:44.854 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:45:44.864 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:44.864 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:44.864 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:45:44.864 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:44.864 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:45:44.864 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:44.884 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:45:44.884 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:45:44.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37536 150\n [Camera]
17-03-18 05:45:45.084 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:45:45.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:45:45.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:45:45.524 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:45.534 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:45.534 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:45:45.904 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 05:45:45.904 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 05:45:45.904 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:45.904 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:45.904 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:45:45.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:45:45.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37536 830
17-03-18 05:45:45.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:45.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:45:45.914 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:45.934 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:45.934 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:45:46.304 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:45:46.304 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:45:46.304 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:46.314 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:46.324 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:45:46.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:45:46.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:45:46.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:45:46.354 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:46.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37536 150' command took 2 ms to send, 1468 ms to get response, and 1476 ms overall
17-03-18 05:45:46.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:45:46.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:45:46.364 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:46.364 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:46.364 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:45:46.454 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171231
17-03-18 05:45:46.454 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17123 mm
17-03-18 05:45:46.454 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:46.744 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:45:46.744 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:45:46.744 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:46.744 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:46.744 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:45:46.874 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:46.874 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:45:46.874 -07 000000625 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:45:46.874 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:46.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:46.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:46.874 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37405, sync = True, waitForSettling = False)
17-03-18 05:45:46.874 -07 000000501 INF: Z Motor: Moving to -0.171229 mm, started at -0.171036 mm, distance = -0.19 um
17-03-18 05:45:46.874 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:46.874 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:45:46.874 -07 000000561 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:45:46.884 -07 000000625 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:45:46.884 -07 000000625 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:46.884 -07 000000625 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:46.884 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:45:46.894 -07 000000501 INF: FPGA: Xmit ZDACW 37405\n [Z Motor]
17-03-18 05:45:46.894 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:45:46.904 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:46.904 -07 000000501 INF: FPGA: 'ZDACW 37405' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:45:46.924 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:46.924 -07 000000626 INF: FPGA: Recv ZDACR 37405
17-03-18 05:45:46.934 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:45:46.934 -07 000000501 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:45:47.274 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:45:47.274 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:45:47.274 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:47.274 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:45:47.274 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:45:47.274 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:45:47.284 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:45:47.334 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:47.334 -07 000000444 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:45:47.344 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:45:47.344 -07 000000625 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:47.344 -07 000000625 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:45:47.344 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:45:48.004 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.008536,
17-03-18 05:45:48.294 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:48.294 -07 000000561 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:45:48.304 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:48.304 -07 000000625 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:48.334 -07 000000625 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:48.334 -07 000000625 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:45:48.334 -07 000000625 INF: Y Motor: Moved to 62.3940 after 1458 ms (table move)
17-03-18 05:45:48.334 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171229 mm (DAC = 37405)
17-03-18 05:45:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.334 -07 000000012 INF: FPGA: Recv ZSGSRD 35946
17-03-18 05:45:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:45:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.344 -07 000000625 INF: FPGA: Recv ZSGSRD 35943
17-03-18 05:45:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.354 -07 000000012 INF: FPGA: Recv ZSGSRD 35948
17-03-18 05:45:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35944
17-03-18 05:45:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.374 -07 000000487 INF: FPGA: Recv ZSGSRD 35941
17-03-18 05:45:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35949
17-03-18 05:45:48.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.394 -07 000000479 INF: FPGA: Recv ZSGSRD 35947
17-03-18 05:45:48.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.404 -07 000000561 INF: FPGA: Recv ZSGSRD 35948
17-03-18 05:45:48.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.414 -07 000000561 INF: FPGA: Recv ZSGSRD 35952
17-03-18 05:45:48.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:48.424 -07 000000487 INF: FPGA: Recv ZSGSRD 35938
17-03-18 05:45:48.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:48.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:49.314 -07 000000487 INF: FPGA: Recv ZPIEZORD 31864
17-03-18 05:45:49.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 870 ms to get response, and 880 ms overall
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.0 V.
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35946 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35946 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35938 (-170.3 uncal um), Max = 35952 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35946, posNoise = 6, negNoise = 8
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: After move to -0.171229, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: Settle wait time = 1457 ms, measure time = 975 ms (allowed 150 ms), total time = 2432 ms
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 975 ms, longer than max expected time of 150 ms
17-03-18 05:45:49.314 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2857 ms
17-03-18 05:45:49.314 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:49.314 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.171248081658874. ----------
17-03-18 05:45:49.314 -07 000000610 INF: Cycle	141	Tile	4	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37229, sync = True, waitForSettling = True)
17-03-18 05:45:49.314 -07 000000610 INF: Z Motor: Moving to -0.170423 mm, started at -0.171248 mm, distance = 0.82 um
17-03-18 05:45:49.314 -07 000000610 INF: FPGA: Xmit ZDACW 37229\n [Z Motor]
17-03-18 05:45:49.324 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:45:49.324 -07 000000610 INF: FPGA: 'ZDACW 37229' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:49.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:49.324 -07 000000501 INF: FPGA: Recv ZDACR 37229
17-03-18 05:45:49.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:49.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.484 -07 000000479 INF: FPGA: Recv ZSGSRD 35824
17-03-18 05:45:49.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35820
17-03-18 05:45:49.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.504 -07 000000479 INF: FPGA: Recv ZSGSRD 35817
17-03-18 05:45:49.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.514 -07 000000501 INF: FPGA: Recv ZSGSRD 35820
17-03-18 05:45:49.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.524 -07 000000479 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:45:49.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.534 -07 000000501 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:45:49.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.544 -07 000000479 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:45:49.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.554 -07 000000501 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:45:49.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.564 -07 000000479 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:45:49.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:49.574 -07 000000012 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:45:49.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:49.584 -07 000000479 INF: FPGA: Recv ZPIEZORD 31665
17-03-18 05:45:49.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:49.594 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.2 V.
17-03-18 05:45:49.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35820 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35820 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35826 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:45:49.594 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35820, posNoise = 6, negNoise = 5
17-03-18 05:45:49.594 -07 000000610 INF: Z Motor: After move to -0.170423, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:49.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:45:49.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:49.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:49.594 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:49.594 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:49.594 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:49.594 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:49.594 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:49.594 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:49.594 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:45:49.594 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:49.594 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:49.594 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:49.604 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:45:49.604 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:49.604 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:45:49.604 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:49.614 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:45:49.614 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:45:49.614 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:45:49.614 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:45:49.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37405 150\n [Camera]
17-03-18 05:45:49.814 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:45:50.254 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 638
17-03-18 05:45:50.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 638
17-03-18 05:45:50.254 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:50.264 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 638
17-03-18 05:45:50.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 638
17-03-18 05:45:50.264 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:50.264 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:50.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:45:50.264 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:50.264 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:45:50.454 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37405 830
17-03-18 05:45:50.594 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:50.644 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:45:50.644 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:45:50.644 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:50.644 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:45:50.644 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:45:50.644 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:50.644 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:50.644 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:45:50.644 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:50.654 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:45:50.814 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:45:50.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:45:50.814 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:50.814 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:45:50.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:45:50.824 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:50.824 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:45:50.824 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:50.824 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:50.824 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:45:51.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:45:51.004 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:51.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37405 150' command took 2 ms to send, 1386 ms to get response, and 1393 ms overall
17-03-18 05:45:51.004 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170850
17-03-18 05:45:51.004 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17085 mm
17-03-18 05:45:51.004 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:51.014 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:45:51.014 -07 000000487 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 05:45:51.014 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:51.014 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37322, sync = True, waitForSettling = False)
17-03-18 05:45:51.014 -07 000000444 INF: Z Motor: Moving to -0.170849 mm, started at -0.170439 mm, distance = -0.41 um
17-03-18 05:45:51.014 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:45:51.024 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:45:51.024 -07 000000487 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:51.024 -07 000000444 INF: FPGA: Xmit ZDACW 37322\n [Z Motor]
17-03-18 05:45:51.024 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:45:51.024 -07 000000487 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:51.024 -07 000000487 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:45:51.034 -07 000000444 INF: FPGA: 'ZDACW 37322' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:45:51.034 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:51.034 -07 000000461 INF: FPGA: Recv ZDACR 37322
17-03-18 05:45:51.044 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:51.044 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:51.044 -07 000000444 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 05:45:51.204 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:45:51.204 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:45:51.204 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:51.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:45:51.204 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:45:51.204 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:51.204 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:51.214 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:51.214 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:45:51.214 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:45:51.414 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:45:51.414 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:45:51.464 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:51.474 -07 000000461 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:45:51.474 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:45:51.474 -07 000000487 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:51.474 -07 000000487 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:45:51.474 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 05:45:51.794 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:51.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:52.424 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:52.424 -07 000000501 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:45:52.434 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.434 -07 000000487 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:52.464 -07 000000487 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:52.464 -07 000000487 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:45:52.464 -07 000000487 INF: Y Motor: Moved to 63.2227 after 1450 ms (table move)
17-03-18 05:45:52.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170849 mm (DAC = 37322)
17-03-18 05:45:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35885
17-03-18 05:45:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.474 -07 000000438 INF: FPGA: Recv ZSGSRD 35890
17-03-18 05:45:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.484 -07 000000444 INF: FPGA: Recv ZSGSRD 35882
17-03-18 05:45:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.494 -07 000000438 INF: FPGA: Recv ZSGSRD 35883
17-03-18 05:45:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.504 -07 000000461 INF: FPGA: Recv ZSGSRD 35885
17-03-18 05:45:52.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.514 -07 000000608 INF: FPGA: Recv ZSGSRD 35889
17-03-18 05:45:52.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.524 -07 000000461 INF: FPGA: Recv ZSGSRD 35880
17-03-18 05:45:52.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.534 -07 000000438 INF: FPGA: Recv ZSGSRD 35879
17-03-18 05:45:52.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.544 -07 000000461 INF: FPGA: Recv ZSGSRD 35886
17-03-18 05:45:52.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.554 -07 000000438 INF: FPGA: Recv ZSGSRD 35887
17-03-18 05:45:52.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:52.564 -07 000000487 INF: FPGA: Recv ZPIEZORD 31770
17-03-18 05:45:52.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -9.1 V.
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35885 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35885 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35879 (-169.9 uncal um), Max = 35890 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35885, posNoise = 5, negNoise = 6
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: After move to -0.170849, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 107 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:45:52.574 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:45:52.624 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:45:52.624 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:52.624 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.170856204718227. ----------
17-03-18 05:45:52.624 -07 000000610 INF: Cycle	141	Tile	5	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:52.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37145, sync = True, waitForSettling = True)
17-03-18 05:45:52.624 -07 000000610 INF: Z Motor: Moving to -0.170039 mm, started at -0.170856 mm, distance = 0.82 um
17-03-18 05:45:52.624 -07 000000610 INF: FPGA: Xmit ZDACW 37145\n [Z Motor]
17-03-18 05:45:52.624 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:45:52.634 -07 000000610 INF: FPGA: 'ZDACW 37145' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:45:52.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:52.634 -07 000000608 INF: FPGA: Recv ZDACR 37145
17-03-18 05:45:52.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:52.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.794 -07 000000444 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:45:52.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:52.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.804 -07 000000608 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:45:52.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.814 -07 000000438 INF: FPGA: Recv ZSGSRD 35757
17-03-18 05:45:52.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.824 -07 000000608 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:45:52.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.834 -07 000000438 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:45:52.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.844 -07 000000608 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:45:52.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.854 -07 000000479 INF: FPGA: Recv ZSGSRD 35754
17-03-18 05:45:52.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.864 -07 000000608 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:45:52.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.874 -07 000000444 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:45:52.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:52.884 -07 000000438 INF: FPGA: Recv ZSGSRD 35762
17-03-18 05:45:52.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:52.894 -07 000000487 INF: FPGA: Recv ZPIEZORD 31572
17-03-18 05:45:52.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:52.904 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.2 V.
17-03-18 05:45:52.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35759 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35759 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35754 (-169.1 uncal um), Max = 35763 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:45:52.904 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35759, posNoise = 4, negNoise = 5
17-03-18 05:45:52.904 -07 000000610 INF: Z Motor: After move to -0.170039, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:52.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:45:52.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:52.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:52.904 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:52.904 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:52.904 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:52.904 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:52.904 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:52.904 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:52.904 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:45:52.904 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:52.904 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:52.904 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:52.914 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:45:52.914 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:52.914 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:45:52.914 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:52.924 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:45:52.924 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:45:52.924 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:45:52.924 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:45:52.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37322 150\n [Camera]
17-03-18 05:45:53.124 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:45:53.364 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.016692,
17-03-18 05:45:53.574 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:45:53.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:45:53.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:53.574 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:53.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:45:53.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:45:53.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:45:53.574 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:53.694 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:53.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:45:53.764 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37322 830
17-03-18 05:45:53.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:53.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:45:53.954 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:45:53.954 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:53.954 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:53.954 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:45:54.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:45:54.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:45:54.064 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:54.074 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:54.074 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 05:45:54.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:45:54.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:45:54.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:54.134 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:45:54.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:45:54.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:54.134 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:54.134 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:45:54.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:54.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:45:54.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:45:54.324 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:54.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37322 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:45:54.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:45:54.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170046753988365. ------
17-03-18 05:45:54.324 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:54.324 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17627 mm
17-03-18 05:45:54.324 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:54.334 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:54.334 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-18 05:45:54.334 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:45:54.334 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:45:54.334 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:54.334 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38505, sync = True, waitForSettling = False)
17-03-18 05:45:54.334 -07 000000626 INF: Z Motor: Moving to -0.176265 mm, started at -0.170047 mm, distance = -6.22 um
17-03-18 05:45:54.334 -07 000000455 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:45:54.344 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:45:54.344 -07 000000626 INF: FPGA: Xmit ZDACW 38505\n [Z Motor]
17-03-18 05:45:54.344 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:54.344 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:54.344 -07 000000479 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:45:54.354 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:45:54.364 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:54.514 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:45:54.514 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:45:54.514 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:54.514 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:54.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:45:54.514 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:45:54.514 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:54.524 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:54.524 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:45:54.524 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:45:54.534 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:45:54.534 -07 000000626 INF: FPGA: 'ZDACW 38505' command took 0 ms to send, 183 ms to get response, and 195 ms overall
17-03-18 05:45:54.534 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:54.534 -07 000000462 INF: FPGA: Recv ZDACR 38505
17-03-18 05:45:54.544 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:54.544 -07 000000626 INF: Z Motor: MoveAbsStepped took 202 ms (did NOT wait for settling yet))
17-03-18 05:45:54.554 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:45:54.554 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-18 05:45:54.734 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:45:54.734 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:45:54.794 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:54.794 -07 000000461 INF: FPGA: Recv YRDPOS 131185
17-03-18 05:45:54.804 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:54.804 -07 000000479 INF: Y Motor: Encoder = 131185 = motor step 102488.3 = 64.0552 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:54.804 -07 000000479 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 05:45:54.804 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 05:45:55.754 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:55.754 -07 000000461 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:45:55.764 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:55.764 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:55.784 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:55.784 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:45:55.784 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1452 ms (table move)
17-03-18 05:45:55.794 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176265 mm (DAC = 38505)
17-03-18 05:45:55.794 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.794 -07 000000461 INF: FPGA: Recv ZSGSRD 36729
17-03-18 05:45:55.804 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:45:55.804 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.804 -07 000000611 INF: FPGA: Recv ZSGSRD 36724
17-03-18 05:45:55.814 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.814 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.814 -07 000000626 INF: FPGA: Recv ZSGSRD 36726
17-03-18 05:45:55.824 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.824 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36727
17-03-18 05:45:55.834 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.834 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.834 -07 000000611 INF: FPGA: Recv ZSGSRD 36724
17-03-18 05:45:55.844 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.844 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.844 -07 000000461 INF: FPGA: Recv ZSGSRD 36726
17-03-18 05:45:55.854 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.854 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.854 -07 000000479 INF: FPGA: Recv ZSGSRD 36734
17-03-18 05:45:55.864 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.864 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.864 -07 000000462 INF: FPGA: Recv ZSGSRD 36732
17-03-18 05:45:55.874 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.874 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.874 -07 000000461 INF: FPGA: Recv ZSGSRD 36727
17-03-18 05:45:55.884 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.884 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:55.884 -07 000000479 INF: FPGA: Recv ZSGSRD 36724
17-03-18 05:45:55.894 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.894 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:55.894 -07 000000461 INF: FPGA: Recv ZPIEZORD 32886
17-03-18 05:45:55.904 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.5 V.
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36727 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36726 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36724 (-175.4 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36727, posNoise = 7, negNoise = 3
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: After move to -0.176265, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:45:55.904 -07 000000438 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:45:55.954 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 05:45:55.954 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:45:55.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:55.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:55.954 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:55.954 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:45:55.954 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:55.954 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:55.954 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:45:55.954 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:45:55.964 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:45:55.964 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:45:55.974 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:45:55.974 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:45:55.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:45:56.024 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:45:56.324 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:45:56.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:45:56.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:45:56.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-18 05:45:56.364 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:45:56.364 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 05:45:56.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:45:56.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:45:56.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:56.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:45:56.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 05:45:56.464 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:45:56.464 -07 000000438 INF: Autofocus start
17-03-18 05:45:56.464 -07 000000438 INF: MeasureProfile start
17-03-18 05:45:56.464 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:45:56.474 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:45:56.474 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:45:56.474 -07 000000438 INF: MeasureProfile done
17-03-18 05:45:56.474 -07 000000438 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:45:56.474 -07 000000438 INF: Autofocus finished
17-03-18 05:45:56.674 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:45:56.674 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:45:56.674 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.17626539134159. ----------
17-03-18 05:45:56.684 -07 000000610 INF: Cycle	141	Tile	6	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:45:56.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37056, sync = True, waitForSettling = True)
17-03-18 05:45:56.684 -07 000000610 INF: Z Motor: Moving to -0.169631 mm, started at -0.176265 mm, distance = 6.63 um
17-03-18 05:45:56.684 -07 000000610 INF: FPGA: Xmit ZDACW 37056\n [Z Motor]
17-03-18 05:45:56.684 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:45:56.694 -07 000000610 INF: FPGA: 'ZDACW 37056' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:45:56.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:56.694 -07 000000438 INF: FPGA: Recv ZDACR 37056
17-03-18 05:45:56.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:45:56.794 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:45:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:45:56.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.854 -07 000000611 INF: FPGA: Recv ZSGSRD 35696
17-03-18 05:45:56.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:45:56.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35693
17-03-18 05:45:56.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.874 -07 000000438 INF: FPGA: Recv ZSGSRD 35695
17-03-18 05:45:56.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35698
17-03-18 05:45:56.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.894 -07 000000438 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:45:56.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35695
17-03-18 05:45:56.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.914 -07 000000438 INF: FPGA: Recv ZSGSRD 35700
17-03-18 05:45:56.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.924 -07 000000461 INF: FPGA: Recv ZSGSRD 35699
17-03-18 05:45:56.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.934 -07 000000438 INF: FPGA: Recv ZSGSRD 35695
17-03-18 05:45:56.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:56.944 -07 000000611 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:45:56.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:45:56.954 -07 000000438 INF: FPGA: Recv ZPIEZORD 31487
17-03-18 05:45:56.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:56.964 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -9.3 V.
17-03-18 05:45:56.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35695 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35695 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35690 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:45:56.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35695, posNoise = 5, negNoise = 5
17-03-18 05:45:56.964 -07 000000610 INF: Z Motor: After move to -0.169631, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:45:56.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:45:56.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:45:56.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:45:56.964 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:45:56.964 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:45:56.964 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:45:56.964 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:45:56.964 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:45:56.964 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:45:56.964 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:45:56.964 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:45:56.964 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:45:56.974 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:45:56.974 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:45:56.974 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:45:56.974 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:45:56.974 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:45:56.984 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:45:56.984 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:45:56.984 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:45:56.984 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:45:56.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37233 150\n [Camera]
17-03-18 05:45:57.194 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:45:57.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:45:57.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:45:57.634 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:57.634 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:45:57.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:45:57.644 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:57.644 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:57.644 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:45:57.644 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:57.644 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:45:57.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37233 830
17-03-18 05:45:57.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:45:58.014 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:45:58.014 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:45:58.014 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:58.014 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:45:58.014 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 05:45:58.014 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:58.024 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:45:58.024 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:45:58.024 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:45:58.024 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:45:58.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:45:58.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:45:58.194 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:45:58.194 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:45:58.194 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:45:58.194 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:45:58.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:45:58.194 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:45:58.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:45:58.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:45:58.384 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:45:58.384 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:45:58.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37233 150' command took 2 ms to send, 1385 ms to get response, and 1393 ms overall
17-03-18 05:45:58.384 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170017
17-03-18 05:45:58.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17002 mm
17-03-18 05:45:58.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:45:58.504 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37140, sync = True, waitForSettling = False)
17-03-18 05:45:58.504 -07 000000461 INF: Z Motor: Moving to -0.170016 mm, started at -0.169636 mm, distance = -0.38 um
17-03-18 05:45:58.504 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:45:58.504 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:45:58.514 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:58.514 -07 000000455 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:45:58.524 -07 000000461 INF: FPGA: Xmit ZDACW 37140\n [Z Motor]
17-03-18 05:45:58.524 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:45:58.524 -07 000000611 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:58.524 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:45:58.524 -07 000000611 INF: Y Motor: Moving 1339 steps-15
17-03-18 05:45:58.524 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:45:58.534 -07 000000461 INF: FPGA: 'ZDACW 37140' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:45:58.534 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:45:58.534 -07 000000608 INF: FPGA: Recv ZDACR 37140
17-03-18 05:45:58.544 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:45:58.544 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:58.544 -07 000000461 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 05:45:58.574 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:45:58.574 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:45:58.574 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:58.584 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:45:58.584 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:45:58.584 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:45:58.584 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:45:58.584 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:45:58.584 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:45:58.584 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:45:58.824 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.000345,
17-03-18 05:45:58.914 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:45:58.914 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:45:58.974 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:58.974 -07 000000461 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:45:58.984 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:58.984 -07 000000611 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:58.984 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:45:58.984 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 05:45:59.934 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:45:59.934 -07 000000455 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:45:59.944 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:59.944 -07 000000611 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:45:59.974 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:45:59.974 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:45:59.974 -07 000000611 INF: Y Motor: Moved to 64.8774 after 1464 ms (table move)
17-03-18 05:45:59.974 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170016 mm (DAC = 37140)
17-03-18 05:45:59.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:59.974 -07 000000611 INF: FPGA: Recv ZSGSRD 35760
17-03-18 05:45:59.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:45:59.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:59.984 -07 000000611 INF: FPGA: Recv ZSGSRD 35761
17-03-18 05:45:59.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:45:59.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:45:59.994 -07 000000611 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:46:00.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.004 -07 000000611 INF: FPGA: Recv ZSGSRD 35754
17-03-18 05:46:00.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.014 -07 000000461 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:46:00.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.024 -07 000000611 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:46:00.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.034 -07 000000611 INF: FPGA: Recv ZSGSRD 35755
17-03-18 05:46:00.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.044 -07 000000461 INF: FPGA: Recv ZSGSRD 35753
17-03-18 05:46:00.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.054 -07 000000611 INF: FPGA: Recv ZSGSRD 35760
17-03-18 05:46:00.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.064 -07 000000461 INF: FPGA: Recv ZSGSRD 35762
17-03-18 05:46:00.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:00.074 -07 000000461 INF: FPGA: Recv ZPIEZORD 31581
17-03-18 05:46:00.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.2 V.
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35758 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35759 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35753 (-169.1 uncal um), Max = 35763 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35758, posNoise = 5, negNoise = 5
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: After move to -0.170016, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 05:46:00.084 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:00.134 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 05:46:00.134 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:00.134 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.170040329776223. ----------
17-03-18 05:46:00.134 -07 000000610 INF: Cycle	141	Tile	7	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:00.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36964, sync = True, waitForSettling = True)
17-03-18 05:46:00.134 -07 000000610 INF: Z Motor: Moving to -0.169210 mm, started at -0.170040 mm, distance = 0.83 um
17-03-18 05:46:00.134 -07 000000610 INF: FPGA: Xmit ZDACW 36964\n [Z Motor]
17-03-18 05:46:00.134 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:46:00.144 -07 000000610 INF: FPGA: 'ZDACW 36964' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:00.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:00.144 -07 000000591 INF: FPGA: Recv ZDACR 36964
17-03-18 05:46:00.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:00.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.304 -07 000000608 INF: FPGA: Recv ZSGSRD 35630
17-03-18 05:46:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35634
17-03-18 05:46:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.324 -07 000000608 INF: FPGA: Recv ZSGSRD 35625
17-03-18 05:46:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.334 -07 000000591 INF: FPGA: Recv ZSGSRD 35631
17-03-18 05:46:00.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.344 -07 000000608 INF: FPGA: Recv ZSGSRD 35631
17-03-18 05:46:00.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.354 -07 000000487 INF: FPGA: Recv ZSGSRD 35636
17-03-18 05:46:00.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.364 -07 000000608 INF: FPGA: Recv ZSGSRD 35636
17-03-18 05:46:00.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.374 -07 000000487 INF: FPGA: Recv ZSGSRD 35633
17-03-18 05:46:00.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.384 -07 000000608 INF: FPGA: Recv ZSGSRD 35635
17-03-18 05:46:00.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:00.394 -07 000000487 INF: FPGA: Recv ZSGSRD 35637
17-03-18 05:46:00.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:00.404 -07 000000608 INF: FPGA: Recv ZPIEZORD 31478
17-03-18 05:46:00.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:00.414 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.2 V.
17-03-18 05:46:00.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.8 uncal um, Median = 35634 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35625 (-168.3 uncal um), Max = 35637 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:46:00.414 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 4, negNoise = 8
17-03-18 05:46:00.414 -07 000000610 INF: Z Motor: After move to -0.169210, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:00.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:46:00.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:00.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:00.414 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:00.414 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:00.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:00.414 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:00.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:46:00.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:00.414 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:00.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:00.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:00.414 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:00.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:00.424 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:00.424 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:00.424 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:00.424 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:46:00.424 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:46:00.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:46:00.434 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:46:00.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37140 150\n [Camera]
17-03-18 05:46:00.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:01.074 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:01.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:01.074 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:01.084 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:01.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:01.084 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:01.084 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:01.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 05:46:01.084 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:01.084 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:46:01.274 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37140 830
17-03-18 05:46:01.414 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:01.464 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:46:01.464 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:46:01.464 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:01.464 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:46:01.464 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:46:01.464 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:01.464 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:46:01.464 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:46:01.474 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:01.474 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:46:01.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:01.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:01.634 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:01.634 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:01.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:01.634 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:01.634 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:01.644 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:46:01.644 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:01.644 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:46:01.794 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:01.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:01.824 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:01.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37140 150' command took 2 ms to send, 1386 ms to get response, and 1393 ms overall
17-03-18 05:46:01.824 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.169992
17-03-18 05:46:01.824 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.16999 mm
17-03-18 05:46:01.824 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:01.834 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:46:01.834 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:46:01.834 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:01.834 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37135, sync = True, waitForSettling = False)
17-03-18 05:46:01.834 -07 000000461 INF: Z Motor: Moving to -0.169993 mm, started at -0.169237 mm, distance = -0.76 um
17-03-18 05:46:01.834 -07 000000591 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:46:01.844 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:01.844 -07 000000455 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:01.844 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:01.844 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:46:01.844 -07 000000461 INF: FPGA: Xmit ZDACW 37135\n [Z Motor]
17-03-18 05:46:01.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:46:01.854 -07 000000461 INF: FPGA: 'ZDACW 37135' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:46:01.854 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:01.854 -07 000000591 INF: FPGA: Recv ZDACR 37135
17-03-18 05:46:01.864 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:01.864 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:01.864 -07 000000461 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 05:46:02.014 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 05:46:02.014 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:46:02.014 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:02.014 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:46:02.014 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:46:02.014 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:02.014 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:02.014 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:02.014 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:46:02.024 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:46:02.244 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:46:02.244 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:46:02.294 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:02.294 -07 000000591 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:46:02.304 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:02.304 -07 000000455 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:02.304 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:46:02.304 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 05:46:03.254 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:03.254 -07 000000608 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:46:03.264 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:03.264 -07 000000455 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:03.294 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:03.294 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:46:03.294 -07 000000455 INF: Y Motor: Moved to 65.7129 after 1468 ms (table move)
17-03-18 05:46:03.304 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169993 mm (DAC = 37135)
17-03-18 05:46:03.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.304 -07 000000501 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:46:03.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:03.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35750
17-03-18 05:46:03.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.324 -07 000000561 INF: FPGA: Recv ZSGSRD 35746
17-03-18 05:46:03.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.334 -07 000000487 INF: FPGA: Recv ZSGSRD 35748
17-03-18 05:46:03.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.344 -07 000000455 INF: FPGA: Recv ZSGSRD 35755
17-03-18 05:46:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.354 -07 000000501 INF: FPGA: Recv ZSGSRD 35755
17-03-18 05:46:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.364 -07 000000487 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:46:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.374 -07 000000461 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:46:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.384 -07 000000561 INF: FPGA: Recv ZSGSRD 35751
17-03-18 05:46:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.394 -07 000000501 INF: FPGA: Recv ZSGSRD 35750
17-03-18 05:46:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:03.404 -07 000000461 INF: FPGA: Recv ZPIEZORD 31614
17-03-18 05:46:03.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.1 V.
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35753 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35753 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35746 (-169.1 uncal um), Max = 35759 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35753, posNoise = 6, negNoise = 7
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: After move to -0.169993, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: Settle wait time = 1470 ms, measure time = 108 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:46:03.414 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:03.464 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 05:46:03.464 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:03.464 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.170008208715514. ----------
17-03-18 05:46:03.464 -07 000000610 INF: Cycle	141	Tile	8	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:03.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36958, sync = True, waitForSettling = True)
17-03-18 05:46:03.464 -07 000000610 INF: Z Motor: Moving to -0.169183 mm, started at -0.170008 mm, distance = 0.83 um
17-03-18 05:46:03.464 -07 000000610 INF: FPGA: Xmit ZDACW 36958\n [Z Motor]
17-03-18 05:46:03.464 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:46:03.474 -07 000000610 INF: FPGA: 'ZDACW 36958' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:03.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:03.474 -07 000000438 INF: FPGA: Recv ZDACR 36958
17-03-18 05:46:03.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:03.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:03.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.634 -07 000000561 INF: FPGA: Recv ZSGSRD 35624
17-03-18 05:46:03.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:03.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35626
17-03-18 05:46:03.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.654 -07 000000461 INF: FPGA: Recv ZSGSRD 35620
17-03-18 05:46:03.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.664 -07 000000561 INF: FPGA: Recv ZSGSRD 35635
17-03-18 05:46:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.674 -07 000000461 INF: FPGA: Recv ZSGSRD 35631
17-03-18 05:46:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.684 -07 000000438 INF: FPGA: Recv ZSGSRD 35630
17-03-18 05:46:03.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.694 -07 000000501 INF: FPGA: Recv ZSGSRD 35628
17-03-18 05:46:03.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:46:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.714 -07 000000455 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:46:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:03.724 -07 000000438 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:46:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:03.734 -07 000000501 INF: FPGA: Recv ZPIEZORD 31430
17-03-18 05:46:03.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:03.744 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.3 V.
17-03-18 05:46:03.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35626 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35625 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35620 (-168.3 uncal um), Max = 35635 (-168.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:03.744 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35626, posNoise = 9, negNoise = 6
17-03-18 05:46:03.744 -07 000000610 INF: Z Motor: After move to -0.169183, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:03.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:46:03.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:03.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:03.744 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:03.744 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:03.744 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:03.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:03.744 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:03.744 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:03.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:03.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:03.744 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:03.744 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:03.754 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:46:03.754 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:03.754 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:03.754 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:03.764 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:46:03.764 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:03.764 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:46:03.764 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:03.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37135 150\n [Camera]
17-03-18 05:46:03.964 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:04.184 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.003063,
17-03-18 05:46:04.414 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:46:04.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:46:04.414 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:04.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:46:04.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:46:04.424 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:04.424 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:04.424 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:46:04.434 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:04.434 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:46:04.604 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37135 830
17-03-18 05:46:04.754 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:04.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:46:04.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:46:04.804 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:04.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:46:04.804 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:46:04.804 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:04.804 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:04.804 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:04.804 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:46:04.814 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:46:04.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:04.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:04.974 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:04.974 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:04.974 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:46:04.974 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:04.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:04.974 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:05.094 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:05.094 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:46:05.164 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:05.164 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:05.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37135 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:46:05.164 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169520
17-03-18 05:46:05.164 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16952 mm
17-03-18 05:46:05.164 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:05.164 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37032, sync = True, waitForSettling = False)
17-03-18 05:46:05.164 -07 000000608 INF: Z Motor: Moving to -0.169522 mm, started at -0.169192 mm, distance = -0.33 um
17-03-18 05:46:05.164 -07 000000608 INF: FPGA: Xmit ZDACW 37032\n [Z Motor]
17-03-18 05:46:05.164 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:46:05.164 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:46:05.174 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:05.174 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:46:05.174 -07 000000608 INF: FPGA: 'ZDACW 37032' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:46:05.174 -07 000000461 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:46:05.184 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:05.184 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:05.184 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:05.184 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:46:05.184 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:05.184 -07 000000461 INF: FPGA: Recv ZDACR 37032
17-03-18 05:46:05.194 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:46:05.194 -07 000000608 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 05:46:05.194 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:05.354 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:46:05.354 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:46:05.354 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:05.364 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:05.364 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:46:05.464 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:46:05.464 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:46:05.464 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:05.474 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:05.474 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 05:46:05.564 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:46:05.564 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 05:46:05.614 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:05.624 -07 000000455 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:46:05.624 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:46:05.624 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:05.624 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:46:05.624 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 05:46:06.574 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:06.574 -07 000000608 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:46:06.584 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:06.584 -07 000000625 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:06.614 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:06.614 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:06.614 -07 000000625 INF: Y Motor: Moved to 66.5376 after 1444 ms (table move)
17-03-18 05:46:06.614 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169522 mm (DAC = 37032)
17-03-18 05:46:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.614 -07 000000461 INF: FPGA: Recv ZSGSRD 35675
17-03-18 05:46:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:06.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35675
17-03-18 05:46:06.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35675
17-03-18 05:46:06.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.644 -07 000000561 INF: FPGA: Recv ZSGSRD 35678
17-03-18 05:46:06.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35680
17-03-18 05:46:06.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.664 -07 000000625 INF: FPGA: Recv ZSGSRD 35674
17-03-18 05:46:06.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.674 -07 000000487 INF: FPGA: Recv ZSGSRD 35676
17-03-18 05:46:06.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.684 -07 000000625 INF: FPGA: Recv ZSGSRD 35679
17-03-18 05:46:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.694 -07 000000487 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:46:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.704 -07 000000561 INF: FPGA: Recv ZSGSRD 35684
17-03-18 05:46:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:06.714 -07 000000461 INF: FPGA: Recv ZPIEZORD 31500
17-03-18 05:46:06.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.2 V.
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35677 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35684 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 6, negNoise = 4
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: After move to -0.169522, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:46:06.724 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:06.774 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:46:06.774 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:06.774 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.169526392804882. ----------
17-03-18 05:46:06.774 -07 000000610 INF: Cycle	141	Tile	9	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:06.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36855, sync = True, waitForSettling = True)
17-03-18 05:46:06.774 -07 000000610 INF: Z Motor: Moving to -0.168711 mm, started at -0.169526 mm, distance = 0.82 um
17-03-18 05:46:06.774 -07 000000610 INF: FPGA: Xmit ZDACW 36855\n [Z Motor]
17-03-18 05:46:06.774 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:46:06.784 -07 000000610 INF: FPGA: 'ZDACW 36855' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:06.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:06.784 -07 000000487 INF: FPGA: Recv ZDACR 36855
17-03-18 05:46:06.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:06.794 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.944 -07 000000625 INF: FPGA: Recv ZSGSRD 35557
17-03-18 05:46:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.954 -07 000000455 INF: FPGA: Recv ZSGSRD 35549
17-03-18 05:46:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.964 -07 000000608 INF: FPGA: Recv ZSGSRD 35553
17-03-18 05:46:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.974 -07 000000487 INF: FPGA: Recv ZSGSRD 35555
17-03-18 05:46:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.984 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-18 05:46:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:06.994 -07 000000487 INF: FPGA: Recv ZSGSRD 35549
17-03-18 05:46:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:07.004 -07 000000608 INF: FPGA: Recv ZSGSRD 35555
17-03-18 05:46:07.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:07.014 -07 000000625 INF: FPGA: Recv ZSGSRD 35553
17-03-18 05:46:07.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:07.024 -07 000000455 INF: FPGA: Recv ZSGSRD 35554
17-03-18 05:46:07.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:07.034 -07 000000487 INF: FPGA: Recv ZSGSRD 35549
17-03-18 05:46:07.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:07.044 -07 000000455 INF: FPGA: Recv ZPIEZORD 31364
17-03-18 05:46:07.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:07.054 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.2 V.
17-03-18 05:46:07.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35552 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35553 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35549 (-167.8 uncal um), Max = 35557 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:46:07.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35552, posNoise = 5, negNoise = 3
17-03-18 05:46:07.054 -07 000000610 INF: Z Motor: After move to -0.168711, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:07.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:46:07.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:07.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:07.054 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:07.054 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:07.054 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:07.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:07.054 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:07.054 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:07.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:07.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:07.054 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:07.054 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:07.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:07.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:07.064 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:07.064 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:07.074 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:46:07.074 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:46:07.074 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:46:07.074 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:46:07.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37032 150\n [Camera]
17-03-18 05:46:07.274 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:07.724 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:07.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:07.724 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:07.724 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:07.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:07.724 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:07.724 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:07.724 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:46:07.734 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:07.734 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:46:07.924 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37032 833
17-03-18 05:46:08.064 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:08.104 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:46:08.104 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:46:08.104 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:08.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:46:08.104 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:46:08.104 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:08.104 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:08.104 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:08.104 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:46:08.114 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:46:08.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:08.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:08.284 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:08.284 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:08.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:08.284 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:08.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:08.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 05:46:08.284 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:08.284 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:46:08.474 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:08.474 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:08.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37032 150' command took 2 ms to send, 1381 ms to get response, and 1393 ms overall
17-03-18 05:46:08.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:08.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168716942075021. ------
17-03-18 05:46:08.474 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17547 mm
17-03-18 05:46:08.474 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:08.474 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:08.594 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:08.594 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 05:46:08.594 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:08.594 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:46:08.594 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 05:46:08.594 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38332, sync = True, waitForSettling = False)
17-03-18 05:46:08.594 -07 000000444 INF: Z Motor: Moving to -0.175473 mm, started at -0.168717 mm, distance = -6.76 um
17-03-18 05:46:08.604 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:08.604 -07 000000611 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:46:08.614 -07 000000444 INF: FPGA: Xmit ZDACW 38332\n [Z Motor]
17-03-18 05:46:08.614 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:46:08.614 -07 000000606 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:08.614 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:08.614 -07 000000606 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:46:08.614 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:46:08.624 -07 000000444 INF: FPGA: 'ZDACW 38332' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:46:08.624 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:08.624 -07 000000012 INF: FPGA: Recv ZDACR 38332
17-03-18 05:46:08.634 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:08.634 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:08.634 -07 000000444 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:46:08.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:46:08.664 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:46:08.664 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:08.664 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:46:08.664 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:46:08.664 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:08.674 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:08.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:46:08.674 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:08.684 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:46:08.794 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:08.794 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 05:46:09.004 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:46:09.004 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:46:09.054 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:09.064 -07 000000444 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:46:09.064 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:46:09.064 -07 000000606 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:09.064 -07 000000606 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:46:09.064 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:46:09.544 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.971733,
17-03-18 05:46:10.014 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:10.014 -07 000000455 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:46:10.024 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.024 -07 000000606 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:10.054 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:10.054 -07 000000606 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:10.054 -07 000000606 INF: Y Motor: Moved to 67.3706 after 1454 ms (table move)
17-03-18 05:46:10.054 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175473 mm (DAC = 38332)
17-03-18 05:46:10.054 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.054 -07 000000424 INF: FPGA: Recv ZSGSRD 36609
17-03-18 05:46:10.064 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:46:10.064 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.064 -07 000000487 INF: FPGA: Recv ZSGSRD 36604
17-03-18 05:46:10.074 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.074 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.074 -07 000000461 INF: FPGA: Recv ZSGSRD 36604
17-03-18 05:46:10.084 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.084 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36601
17-03-18 05:46:10.094 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.094 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.094 -07 000000382 INF: FPGA: Recv ZSGSRD 36603
17-03-18 05:46:10.104 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.104 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.104 -07 000000608 INF: FPGA: Recv ZSGSRD 36611
17-03-18 05:46:10.114 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.114 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.114 -07 000000461 INF: FPGA: Recv ZSGSRD 36600
17-03-18 05:46:10.124 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.124 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.124 -07 000000625 INF: FPGA: Recv ZSGSRD 36607
17-03-18 05:46:10.134 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.134 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.134 -07 000000382 INF: FPGA: Recv ZSGSRD 36612
17-03-18 05:46:10.144 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.144 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:10.144 -07 000000462 INF: FPGA: Recv ZSGSRD 36604
17-03-18 05:46:10.154 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.154 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:10.154 -07 000000606 INF: FPGA: Recv ZPIEZORD 32779
17-03-18 05:46:10.164 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.5 V.
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36606 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36600 (-174.6 uncal um), Max = 36612 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36606, posNoise = 6, negNoise = 6
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: After move to -0.175473, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:46:10.164 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:10.214 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 05:46:10.214 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:10.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:10.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:10.214 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:10.214 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:10.214 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:10.214 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:10.214 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:10.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:10.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:10.214 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:10.234 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:46:10.234 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:46:10.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:10.284 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:10.584 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:10.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:10.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:10.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:46:10.614 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:10.624 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:10.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 05:46:10.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:46:10.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:10.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:10.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:46:10.724 -07 000000424 INF: Autofocus start
17-03-18 05:46:10.724 -07 000000424 INF: MeasureProfile start
17-03-18 05:46:10.724 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:10.724 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:10.734 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:10.734 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:10.734 -07 000000424 INF: MeasureProfile done
17-03-18 05:46:10.734 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:46:10.734 -07 000000424 INF: Autofocus finished
17-03-18 05:46:10.934 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:10.934 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:10.934 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175488061672437. ----------
17-03-18 05:46:10.944 -07 000000610 INF: Cycle	141	Tile	10	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:10.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36829, sync = True, waitForSettling = True)
17-03-18 05:46:10.944 -07 000000610 INF: Z Motor: Moving to -0.168592 mm, started at -0.175488 mm, distance = 6.90 um
17-03-18 05:46:10.944 -07 000000610 INF: FPGA: Xmit ZDACW 36829\n [Z Motor]
17-03-18 05:46:10.944 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:46:10.954 -07 000000610 INF: FPGA: 'ZDACW 36829' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:10.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:10.954 -07 000000444 INF: FPGA: Recv ZDACR 36829
17-03-18 05:46:10.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:10.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:11.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.114 -07 000000424 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:46:11.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:11.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.124 -07 000000606 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:46:11.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.134 -07 000000382 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:46:11.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:46:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.154 -07 000000424 INF: FPGA: Recv ZSGSRD 35534
17-03-18 05:46:11.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:11.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:46:11.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.174 -07 000000461 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:46:11.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:46:11.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.194 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:46:11.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:11.204 -07 000000424 INF: FPGA: Recv ZSGSRD 35534
17-03-18 05:46:11.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:11.214 -07 000000382 INF: FPGA: Recv ZPIEZORD 31351
17-03-18 05:46:11.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:11.224 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.2 V.
17-03-18 05:46:11.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35533 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35534 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35527 (-167.7 uncal um), Max = 35538 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:11.224 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35533, posNoise = 5, negNoise = 6
17-03-18 05:46:11.224 -07 000000610 INF: Z Motor: After move to -0.168592, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:11.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:46:11.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:11.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:11.224 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:11.224 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:11.224 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:11.224 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:11.224 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:11.224 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:46:11.224 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:11.224 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:11.224 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:11.224 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:11.224 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:11.224 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:46:11.224 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:11.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:11.234 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:46:11.234 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:46:11.234 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:46:11.234 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:46:11.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37006 150\n [Camera]
17-03-18 05:46:11.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:11.794 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:11.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:11.884 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:11.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:11.884 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:11.894 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:11.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:11.894 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:11.894 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:11.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:46:11.894 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:11.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:46:12.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37006 830
17-03-18 05:46:12.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:12.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:46:12.264 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 05:46:12.264 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:12.264 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:46:12.264 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:46:12.264 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:12.274 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:12.274 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:46:12.274 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:12.274 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:46:12.444 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:12.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:12.444 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:12.444 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:12.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:12.444 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:12.444 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:12.444 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:46:12.444 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:12.444 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:46:12.634 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:12.634 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:12.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37006 150' command took 2 ms to send, 1386 ms to get response, and 1394 ms overall
17-03-18 05:46:12.634 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168920
17-03-18 05:46:12.644 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16892 mm
17-03-18 05:46:12.644 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:12.644 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:46:12.644 -07 000000438 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 05:46:12.644 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:12.644 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36901, sync = True, waitForSettling = False)
17-03-18 05:46:12.644 -07 000000424 INF: Z Motor: Moving to -0.168922 mm, started at -0.168595 mm, distance = -0.33 um
17-03-18 05:46:12.644 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:46:12.654 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:12.654 -07 000000438 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:12.654 -07 000000424 INF: FPGA: Xmit ZDACW 36901\n [Z Motor]
17-03-18 05:46:12.654 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:46:12.654 -07 000000438 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:12.654 -07 000000438 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:46:12.664 -07 000000424 INF: FPGA: 'ZDACW 36901' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:46:12.664 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:12.664 -07 000000444 INF: FPGA: Recv ZDACR 36901
17-03-18 05:46:12.674 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:12.674 -07 000000424 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 05:46:12.674 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:12.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:46:12.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:46:12.844 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:12.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:46:12.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:46:12.844 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:12.854 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:12.854 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:46:12.854 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:46:12.854 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:46:13.044 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:46:13.044 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:46:13.094 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:13.104 -07 000000444 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:46:13.104 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:46:13.104 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:13.104 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:46:13.104 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.842 mm, average velocity = 2.148 mm/sec
17-03-18 05:46:14.054 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:14.054 -07 000000591 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:46:14.064 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.064 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:14.094 -07 000000438 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:14.094 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:14.094 -07 000000438 INF: Y Motor: Moved to 68.2036 after 1449 ms (table move)
17-03-18 05:46:14.094 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168922 mm (DAC = 36901)
17-03-18 05:46:14.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.094 -07 000000444 INF: FPGA: Recv ZSGSRD 35591
17-03-18 05:46:14.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:14.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.104 -07 000000501 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:46:14.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.114 -07 000000461 INF: FPGA: Recv ZSGSRD 35579
17-03-18 05:46:14.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.124 -07 000000591 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:46:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35579
17-03-18 05:46:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.144 -07 000000382 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:46:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.154 -07 000000501 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:46:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:46:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.174 -07 000000438 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:46:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35582
17-03-18 05:46:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:14.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 31442
17-03-18 05:46:14.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.1 V.
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35585 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35585 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35579 (-168.0 uncal um), Max = 35591 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35585, posNoise = 6, negNoise = 6
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: After move to -0.168922, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-18 05:46:14.204 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:14.254 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 05:46:14.254 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:14.254 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.168928941075699. ----------
17-03-18 05:46:14.254 -07 000000610 INF: Cycle	141	Tile	11	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:14.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36724, sync = True, waitForSettling = True)
17-03-18 05:46:14.254 -07 000000610 INF: Z Motor: Moving to -0.168112 mm, started at -0.168929 mm, distance = 0.82 um
17-03-18 05:46:14.254 -07 000000610 INF: FPGA: Xmit ZDACW 36724\n [Z Motor]
17-03-18 05:46:14.254 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:46:14.264 -07 000000610 INF: FPGA: 'ZDACW 36724' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:14.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:14.264 -07 000000461 INF: FPGA: Recv ZDACR 36724
17-03-18 05:46:14.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.424 -07 000000382 INF: FPGA: Recv ZSGSRD 35460
17-03-18 05:46:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.434 -07 000000438 INF: FPGA: Recv ZSGSRD 35457
17-03-18 05:46:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35461
17-03-18 05:46:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35459
17-03-18 05:46:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.464 -07 000000382 INF: FPGA: Recv ZSGSRD 35455
17-03-18 05:46:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.474 -07 000000461 INF: FPGA: Recv ZSGSRD 35458
17-03-18 05:46:14.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.484 -07 000000382 INF: FPGA: Recv ZSGSRD 35462
17-03-18 05:46:14.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.494 -07 000000591 INF: FPGA: Recv ZSGSRD 35463
17-03-18 05:46:14.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.504 -07 000000444 INF: FPGA: Recv ZSGSRD 35456
17-03-18 05:46:14.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:14.514 -07 000000438 INF: FPGA: Recv ZSGSRD 35456
17-03-18 05:46:14.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:14.524 -07 000000444 INF: FPGA: Recv ZPIEZORD 31239
17-03-18 05:46:14.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:14.534 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.3 V.
17-03-18 05:46:14.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35459 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35463 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:46:14.534 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35459, posNoise = 4, negNoise = 4
17-03-18 05:46:14.534 -07 000000610 INF: Z Motor: After move to -0.168112, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:14.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:46:14.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:14.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:14.534 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:14.534 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:14.534 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:14.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:14.534 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:14.534 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:14.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:14.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:14.534 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:14.534 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:14.544 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:14.544 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:14.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:14.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:14.554 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:46:14.554 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:14.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:46:14.554 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:14.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36901 150\n [Camera]
17-03-18 05:46:14.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:14.904 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.96762,
17-03-18 05:46:15.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:15.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:15.204 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:15.204 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:15.204 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:46:15.204 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:15.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:15.204 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:15.204 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:15.204 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:46:15.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36901 830
17-03-18 05:46:15.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:15.584 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:46:15.584 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:46:15.584 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:15.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:46:15.584 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:46:15.584 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:15.584 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:15.584 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:15.584 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:46:15.594 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:46:15.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:15.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:15.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:15.764 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:15.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:46:15.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:15.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:15.764 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:15.764 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:15.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:46:15.954 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:15.954 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:15.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36901 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:46:15.954 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168873
17-03-18 05:46:15.954 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16887 mm
17-03-18 05:46:15.954 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:15.964 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:46:15.964 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 05:46:15.964 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:15.964 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36890, sync = True, waitForSettling = False)
17-03-18 05:46:15.964 -07 000000501 INF: Z Motor: Moving to -0.168872 mm, started at -0.168119 mm, distance = -0.75 um
17-03-18 05:46:15.964 -07 000000591 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:46:15.974 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:15.974 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:15.974 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:15.974 -07 000000438 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:46:15.974 -07 000000501 INF: FPGA: Xmit ZDACW 36890\n [Z Motor]
17-03-18 05:46:15.974 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:46:15.984 -07 000000501 INF: FPGA: 'ZDACW 36890' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:46:15.984 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:15.984 -07 000000591 INF: FPGA: Recv ZDACR 36890
17-03-18 05:46:15.994 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:15.994 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:15.994 -07 000000501 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 05:46:16.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:46:16.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:46:16.144 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:16.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:46:16.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:46:16.154 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:16.154 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:16.154 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:16.154 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:46:16.164 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:46:16.364 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:46:16.364 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:46:16.424 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:16.424 -07 000000501 INF: FPGA: Recv YRDPOS 141364
17-03-18 05:46:16.434 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:16.434 -07 000000438 INF: Y Motor: Encoder = 141364 = motor step 110440.6 = 69.0254 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:16.434 -07 000000438 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:46:16.434 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 05:46:16.794 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:17.384 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:17.384 -07 000000501 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:46:17.394 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:17.394 -07 000000438 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:17.424 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:17.424 -07 000000438 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:46:17.424 -07 000000438 INF: Y Motor: Moved to 69.0259 after 1461 ms (table move)
17-03-18 05:46:17.424 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168872 mm (DAC = 36890)
17-03-18 05:46:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35570
17-03-18 05:46:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.434 -07 000000438 INF: FPGA: Recv ZSGSRD 35572
17-03-18 05:46:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.444 -07 000000591 INF: FPGA: Recv ZSGSRD 35574
17-03-18 05:46:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35570
17-03-18 05:46:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.464 -07 000000438 INF: FPGA: Recv ZSGSRD 35572
17-03-18 05:46:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35580
17-03-18 05:46:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35579
17-03-18 05:46:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.494 -07 000000438 INF: FPGA: Recv ZSGSRD 35577
17-03-18 05:46:17.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.504 -07 000000461 INF: FPGA: Recv ZSGSRD 35578
17-03-18 05:46:17.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35577
17-03-18 05:46:17.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:17.524 -07 000000424 INF: FPGA: Recv ZPIEZORD 31409
17-03-18 05:46:17.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.2 V.
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35576 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35570 (-168.0 uncal um), Max = 35580 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 5, negNoise = 5
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: After move to -0.168872, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:46:17.534 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:17.584 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:46:17.584 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:17.584 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.168864698954281. ----------
17-03-18 05:46:17.584 -07 000000610 INF: Cycle	141	Tile	12	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:17.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36713, sync = True, waitForSettling = True)
17-03-18 05:46:17.584 -07 000000610 INF: Z Motor: Moving to -0.168061 mm, started at -0.168865 mm, distance = 0.80 um
17-03-18 05:46:17.584 -07 000000610 INF: FPGA: Xmit ZDACW 36713\n [Z Motor]
17-03-18 05:46:17.584 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:46:17.594 -07 000000610 INF: FPGA: 'ZDACW 36713' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:46:17.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:17.594 -07 000000591 INF: FPGA: Recv ZDACR 36713
17-03-18 05:46:17.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35446
17-03-18 05:46:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.764 -07 000000424 INF: FPGA: Recv ZSGSRD 35459
17-03-18 05:46:17.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:17.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35449
17-03-18 05:46:17.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.784 -07 000000424 INF: FPGA: Recv ZSGSRD 35446
17-03-18 05:46:17.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35457
17-03-18 05:46:17.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:17.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.804 -07 000000424 INF: FPGA: Recv ZSGSRD 35458
17-03-18 05:46:17.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.814 -07 000000461 INF: FPGA: Recv ZSGSRD 35453
17-03-18 05:46:17.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.824 -07 000000424 INF: FPGA: Recv ZSGSRD 35449
17-03-18 05:46:17.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.834 -07 000000501 INF: FPGA: Recv ZSGSRD 35443
17-03-18 05:46:17.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:17.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:46:17.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:17.854 -07 000000438 INF: FPGA: Recv ZPIEZORD 31242
17-03-18 05:46:17.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:17.864 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.3 V.
17-03-18 05:46:17.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35443 (-167.1 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:46:17.864 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 8, negNoise = 8
17-03-18 05:46:17.864 -07 000000610 INF: Z Motor: After move to -0.168061, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:17.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:46:17.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:17.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:17.864 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:17.864 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:17.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:17.864 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:17.864 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:17.864 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:17.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:17.864 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:17.864 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:17.864 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:17.874 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:17.874 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:17.874 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:17.874 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:17.884 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:46:17.884 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:17.884 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:46:17.884 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:17.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36890 150\n [Camera]
17-03-18 05:46:18.094 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:18.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:18.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:18.534 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:18.534 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:18.534 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:46:18.534 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:18.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:18.544 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:18.544 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:18.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:46:18.724 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36890 830
17-03-18 05:46:18.874 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:18.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:46:18.924 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:46:18.924 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:18.924 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:46:18.924 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:46:18.924 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:18.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:18.934 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:18.934 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:46:18.934 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:46:19.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:19.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:19.094 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:19.094 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:19.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:46:19.094 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:19.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:19.094 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:19.094 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:19.094 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:46:19.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:19.284 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:19.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36890 150' command took 2 ms to send, 1385 ms to get response, and 1393 ms overall
17-03-18 05:46:19.284 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168417
17-03-18 05:46:19.284 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16842 mm
17-03-18 05:46:19.284 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:19.294 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:46:19.294 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:46:19.294 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:19.294 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36791, sync = True, waitForSettling = False)
17-03-18 05:46:19.294 -07 000000608 INF: Z Motor: Moving to -0.168418 mm, started at -0.168068 mm, distance = -0.35 um
17-03-18 05:46:19.294 -07 000000487 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:46:19.304 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:19.304 -07 000000501 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:19.304 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:19.304 -07 000000501 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:46:19.304 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:19.314 -07 000000608 INF: FPGA: Xmit ZDACW 36791\n [Z Motor]
17-03-18 05:46:19.314 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:46:19.324 -07 000000608 INF: FPGA: 'ZDACW 36791' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:46:19.324 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:19.324 -07 000000591 INF: FPGA: Recv ZDACR 36791
17-03-18 05:46:19.334 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:19.334 -07 000000608 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:46:19.474 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:46:19.474 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:46:19.474 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:19.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:46:19.474 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:46:19.474 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:19.484 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:46:19.484 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:46:19.484 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:46:19.484 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:46:19.674 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:46:19.674 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:46:19.734 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:19.734 -07 000000626 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:46:19.744 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:19.744 -07 000000501 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:19.744 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:46:19.744 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.847 mm, average velocity = 2.240 mm/sec
17-03-18 05:46:20.264 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.98264,
17-03-18 05:46:20.694 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:20.694 -07 000000591 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:46:20.704 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:20.704 -07 000000501 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:20.734 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:20.734 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:20.734 -07 000000501 INF: Y Motor: Moved to 69.8618 after 1442 ms (table move)
17-03-18 05:46:20.734 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168418 mm (DAC = 36791)
17-03-18 05:46:20.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.734 -07 000000501 INF: FPGA: Recv ZSGSRD 35507
17-03-18 05:46:20.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:20.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.744 -07 000000591 INF: FPGA: Recv ZSGSRD 35509
17-03-18 05:46:20.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.754 -07 000000591 INF: FPGA: Recv ZSGSRD 35502
17-03-18 05:46:20.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.764 -07 000000424 INF: FPGA: Recv ZSGSRD 35508
17-03-18 05:46:20.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.774 -07 000000424 INF: FPGA: Recv ZSGSRD 35505
17-03-18 05:46:20.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.784 -07 000000591 INF: FPGA: Recv ZSGSRD 35510
17-03-18 05:46:20.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35510
17-03-18 05:46:20.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.804 -07 000000626 INF: FPGA: Recv ZSGSRD 35505
17-03-18 05:46:20.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35509
17-03-18 05:46:20.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:20.824 -07 000000591 INF: FPGA: Recv ZSGSRD 35507
17-03-18 05:46:20.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:20.834 -07 000000608 INF: FPGA: Recv ZPIEZORD 31325
17-03-18 05:46:20.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.2 V.
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35507 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35508 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35502 (-167.5 uncal um), Max = 35510 (-167.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35507, posNoise = 3, negNoise = 5
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: After move to -0.168418, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-18 05:46:20.844 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:20.894 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 05:46:20.894 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:20.894 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168427852528641. ----------
17-03-18 05:46:20.894 -07 000000610 INF: Cycle	141	Tile	13	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:20.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36614, sync = True, waitForSettling = True)
17-03-18 05:46:20.894 -07 000000610 INF: Z Motor: Moving to -0.167608 mm, started at -0.168428 mm, distance = 0.82 um
17-03-18 05:46:20.894 -07 000000610 INF: FPGA: Xmit ZDACW 36614\n [Z Motor]
17-03-18 05:46:20.894 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:46:20.904 -07 000000610 INF: FPGA: 'ZDACW 36614' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:20.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:20.904 -07 000000501 INF: FPGA: Recv ZDACR 36614
17-03-18 05:46:20.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:20.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:21.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.064 -07 000000501 INF: FPGA: Recv ZSGSRD 35379
17-03-18 05:46:21.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:21.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.074 -07 000000608 INF: FPGA: Recv ZSGSRD 35382
17-03-18 05:46:21.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.084 -07 000000608 INF: FPGA: Recv ZSGSRD 35379
17-03-18 05:46:21.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.094 -07 000000424 INF: FPGA: Recv ZSGSRD 35377
17-03-18 05:46:21.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.104 -07 000000501 INF: FPGA: Recv ZSGSRD 35386
17-03-18 05:46:21.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35383
17-03-18 05:46:21.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.124 -07 000000591 INF: FPGA: Recv ZSGSRD 35381
17-03-18 05:46:21.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.134 -07 000000591 INF: FPGA: Recv ZSGSRD 35380
17-03-18 05:46:21.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.144 -07 000000501 INF: FPGA: Recv ZSGSRD 35378
17-03-18 05:46:21.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:21.154 -07 000000608 INF: FPGA: Recv ZSGSRD 35379
17-03-18 05:46:21.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:21.164 -07 000000501 INF: FPGA: Recv ZPIEZORD 31121
17-03-18 05:46:21.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:21.174 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.4 V.
17-03-18 05:46:21.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35380 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35380 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35377 (-166.7 uncal um), Max = 35386 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:46:21.174 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35380, posNoise = 6, negNoise = 3
17-03-18 05:46:21.174 -07 000000610 INF: Z Motor: After move to -0.167608, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:21.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:46:21.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:21.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:21.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:21.174 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:21.174 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:21.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:21.174 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:21.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:21.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:21.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:21.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:21.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:21.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:21.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:21.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:46:21.184 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:21.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:46:21.194 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:46:21.194 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:46:21.194 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:46:21.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36791 150\n [Camera]
17-03-18 05:46:21.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:21.794 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:21.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:21.844 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:21.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:21.844 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:21.844 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:21.844 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:46:21.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:21.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:21.844 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:21.974 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:21.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:46:22.034 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36791 830
17-03-18 05:46:22.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:22.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:46:22.234 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:46:22.234 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:22.234 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:22.234 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:46:22.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:46:22.344 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:46:22.344 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:22.354 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:22.354 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 05:46:22.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:22.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:22.404 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:22.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:22.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:22.404 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:22.404 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:22.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:46:22.414 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:22.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:46:22.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:22.594 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:22.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36791 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:46:22.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:22.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167611977586638. ------
17-03-18 05:46:22.604 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:22.604 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17407 mm
17-03-18 05:46:22.604 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:22.604 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:22.604 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:46:22.604 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 05:46:22.604 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38026, sync = True, waitForSettling = False)
17-03-18 05:46:22.604 -07 000000487 INF: Z Motor: Moving to -0.174072 mm, started at -0.167612 mm, distance = -6.46 um
17-03-18 05:46:22.614 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:22.614 -07 000000487 INF: FPGA: Xmit ZDACW 38026\n [Z Motor]
17-03-18 05:46:22.614 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:46:22.624 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:22.624 -07 000000487 INF: FPGA: 'ZDACW 38026' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:46:22.624 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:46:22.634 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:22.634 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:46:22.634 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:22.634 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:22.634 -07 000000561 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:46:22.644 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:22.644 -07 000000608 INF: FPGA: Recv ZDACR 38026
17-03-18 05:46:22.654 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:22.654 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:46:22.654 -07 000000487 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:46:22.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:46:22.784 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:46:22.784 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:22.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:46:22.784 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:46:22.784 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:22.784 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:46:22.784 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:46:22.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:46:22.794 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:46:22.834 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:22.834 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 05:46:23.024 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:46:23.024 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:46:23.074 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:23.084 -07 000000606 INF: FPGA: Recv YRDPOS 144767
17-03-18 05:46:23.084 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:46:23.084 -07 000000561 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:23.084 -07 000000561 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:46:23.084 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec
17-03-18 05:46:24.034 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:24.034 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:46:24.044 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:24.044 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:24.074 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:24.074 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:46:24.074 -07 000000561 INF: Y Motor: Moved to 70.6875 after 1465 ms (table move)
17-03-18 05:46:24.074 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174072 mm (DAC = 38026)
17-03-18 05:46:24.074 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.074 -07 000000424 INF: FPGA: Recv ZSGSRD 36389
17-03-18 05:46:24.084 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:46:24.084 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.084 -07 000000625 INF: FPGA: Recv ZSGSRD 36389
17-03-18 05:46:24.094 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36381
17-03-18 05:46:24.104 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.104 -07 000000444 INF: FPGA: Recv ZSGSRD 36382
17-03-18 05:46:24.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.124 -07 000000625 INF: FPGA: Recv ZSGSRD 36385
17-03-18 05:46:24.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:46:24.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.134 -07 000000012 INF: FPGA: Recv ZSGSRD 36390
17-03-18 05:46:24.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.144 -07 000000487 INF: FPGA: Recv ZSGSRD 36387
17-03-18 05:46:24.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36393
17-03-18 05:46:24.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.164 -07 000000608 INF: FPGA: Recv ZSGSRD 36379
17-03-18 05:46:24.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:24.174 -07 000000455 INF: FPGA: Recv ZSGSRD 36385
17-03-18 05:46:24.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.184 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:24.184 -07 000000455 INF: FPGA: Recv ZPIEZORD 32499
17-03-18 05:46:24.194 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.6 V.
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36386 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36386 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36379 (-173.1 uncal um), Max = 36393 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36386, posNoise = 7, negNoise = 7
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: After move to -0.174072, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: Settle wait time = 1468 ms, measure time = 116 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:46:24.194 -07 000000462 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:24.234 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:46:24.234 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:24.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:24.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:24.234 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:24.234 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:24.234 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:24.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:24.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:24.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:24.244 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:24.244 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:24.254 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:46:24.254 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:46:24.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:24.304 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:24.604 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:24.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:24.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:24.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-18 05:46:24.644 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:24.644 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:24.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:46:24.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:46:24.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:24.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:24.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:46:24.744 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:24.744 -07 000000455 INF: Autofocus start
17-03-18 05:46:24.744 -07 000000455 INF: MeasureProfile start
17-03-18 05:46:24.744 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:24.754 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:24.754 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:24.754 -07 000000455 INF: MeasureProfile done
17-03-18 05:46:24.754 -07 000000455 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 05:46:24.754 -07 000000455 INF: Autofocus finished
17-03-18 05:46:24.954 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:24.954 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:24.954 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 05:46:24.954 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174074735001249. ----------
17-03-18 05:46:24.954 -07 000000610 INF: Cycle	141	Tile	14	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:24.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36413, sync = True, waitForSettling = True)
17-03-18 05:46:24.964 -07 000000610 INF: Z Motor: Moving to -0.166688 mm, started at -0.174075 mm, distance = 7.39 um
17-03-18 05:46:24.964 -07 000000610 INF: FPGA: Xmit ZDACW 36413\n [Z Motor]
17-03-18 05:46:24.964 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:46:24.974 -07 000000610 INF: FPGA: 'ZDACW 36413' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:24.974 -07 000000455 INF: FPGA: Recv ZDACR 36413
17-03-18 05:46:24.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:24.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:25.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.134 -07 000000501 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:46:25.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:25.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:46:25.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.154 -07 000000455 INF: FPGA: Recv ZSGSRD 35241
17-03-18 05:46:25.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:46:25.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.174 -07 000000455 INF: FPGA: Recv ZSGSRD 35243
17-03-18 05:46:25.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.184 -07 000000479 INF: FPGA: Recv ZSGSRD 35243
17-03-18 05:46:25.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.194 -07 000000455 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:46:25.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.204 -07 000000479 INF: FPGA: Recv ZSGSRD 35243
17-03-18 05:46:25.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35233
17-03-18 05:46:25.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:25.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35233
17-03-18 05:46:25.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:25.234 -07 000000424 INF: FPGA: Recv ZPIEZORD 30961
17-03-18 05:46:25.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:25.244 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.4 V.
17-03-18 05:46:25.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35239 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35238 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35233 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:25.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35239, posNoise = 4, negNoise = 6
17-03-18 05:46:25.244 -07 000000610 INF: Z Motor: After move to -0.166688, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:25.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:46:25.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:25.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:25.244 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:25.244 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:25.244 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:25.244 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:25.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:25.244 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:25.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:46:25.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:25.244 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 05:46:25.244 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:25.254 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:25.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:25.254 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:25.254 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:25.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:46:25.264 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:46:25.264 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:46:25.264 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:46:25.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36590 150\n [Camera]
17-03-18 05:46:25.464 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:25.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.997626,
17-03-18 05:46:25.904 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:25.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:25.904 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:25.914 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:25.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:25.914 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:26.034 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:26.034 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:46:26.034 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:26.034 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:46:26.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36590 830
17-03-18 05:46:26.254 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:26.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:46:26.404 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:46:26.404 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:26.414 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:26.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-18 05:46:26.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:46:26.414 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:46:26.414 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:26.414 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:26.424 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 05:46:26.464 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:26.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:26.474 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:26.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:26.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:26.474 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:26.474 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:26.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:46:26.474 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:26.474 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:46:26.654 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:26.654 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:26.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36590 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-18 05:46:26.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:26.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.166706163674649. ------
17-03-18 05:46:26.664 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:26.664 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17335 mm
17-03-18 05:46:26.664 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:26.664 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:26.664 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37868, sync = True, waitForSettling = False)
17-03-18 05:46:26.664 -07 000000487 INF: Z Motor: Moving to -0.173349 mm, started at -0.166706 mm, distance = -6.64 um
17-03-18 05:46:26.664 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:46:26.664 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:46:26.674 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:26.674 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:26.674 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:46:26.684 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:46:26.684 -07 000000438 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:26.684 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:26.684 -07 000000438 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:46:26.684 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:26.694 -07 000000487 INF: FPGA: Xmit ZDACW 37868\n [Z Motor]
17-03-18 05:46:26.694 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:46:26.704 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:26.704 -07 000000487 INF: FPGA: 'ZDACW 37868' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:46:26.714 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:26.714 -07 000000608 INF: FPGA: Recv ZDACR 37868
17-03-18 05:46:26.724 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:46:26.724 -07 000000487 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:46:26.794 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:26.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:26.864 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:46:26.864 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:46:26.864 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:26.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:46:26.864 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:46:26.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:26.874 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:26.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:46:26.874 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:26.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:46:26.884 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:26.884 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 05:46:27.074 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:46:27.074 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:46:27.124 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:27.134 -07 000000501 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:46:27.134 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:27.134 -07 000000438 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:27.134 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:46:27.134 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:46:28.084 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:28.084 -07 000000625 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:46:28.094 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.094 -07 000000438 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:28.124 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:28.124 -07 000000438 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:28.124 -07 000000438 INF: Y Motor: Moved to 71.5176 after 1454 ms (table move)
17-03-18 05:46:28.124 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173349 mm (DAC = 37868)
17-03-18 05:46:28.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.124 -07 000000382 INF: FPGA: Recv ZSGSRD 36268
17-03-18 05:46:28.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:28.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.134 -07 000000626 INF: FPGA: Recv ZSGSRD 36281
17-03-18 05:46:28.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.144 -07 000000561 INF: FPGA: Recv ZSGSRD 36272
17-03-18 05:46:28.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36279
17-03-18 05:46:28.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.164 -07 000000487 INF: FPGA: Recv ZSGSRD 36273
17-03-18 05:46:28.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36268
17-03-18 05:46:28.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.184 -07 000000608 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:46:28.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36271
17-03-18 05:46:28.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.204 -07 000000611 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:46:28.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:28.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:46:28.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.224 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:28.224 -07 000000479 INF: FPGA: Recv ZPIEZORD 32347
17-03-18 05:46:28.234 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.7 V.
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36275 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36276 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36268 (-172.4 uncal um), Max = 36281 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36275, posNoise = 6, negNoise = 7
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: After move to -0.173349, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:46:28.234 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:28.284 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:46:28.284 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:28.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:28.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:28.284 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:28.284 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:28.284 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:28.284 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:28.284 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:28.284 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:28.294 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:28.294 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:28.294 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:46:28.294 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:46:28.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:28.344 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:28.644 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:28.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:28.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:28.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-18 05:46:28.684 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:28.684 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:28.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:46:28.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:46:28.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:28.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:28.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:46:28.784 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:28.784 -07 000000479 INF: Autofocus start
17-03-18 05:46:28.784 -07 000000479 INF: MeasureProfile start
17-03-18 05:46:28.784 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:28.794 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:28.794 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:28.794 -07 000000479 INF: MeasureProfile done
17-03-18 05:46:28.794 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:46:28.794 -07 000000479 INF: Autofocus finished
17-03-18 05:46:28.994 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:28.994 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:46:28.994 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173361647453514. ----------
17-03-18 05:46:28.994 -07 000000610 INF: Cycle	141	Tile	15	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:29.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36401, sync = True, waitForSettling = True)
17-03-18 05:46:29.004 -07 000000610 INF: Z Motor: Moving to -0.166633 mm, started at -0.173362 mm, distance = 6.73 um
17-03-18 05:46:29.004 -07 000000610 INF: FPGA: Xmit ZDACW 36401\n [Z Motor]
17-03-18 05:46:29.004 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:46:29.014 -07 000000610 INF: FPGA: 'ZDACW 36401' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:29.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:29.014 -07 000000626 INF: FPGA: Recv ZDACR 36401
17-03-18 05:46:29.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:29.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.174 -07 000000012 INF: FPGA: Recv ZSGSRD 35231
17-03-18 05:46:29.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:29.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.184 -07 000000606 INF: FPGA: Recv ZSGSRD 35230
17-03-18 05:46:29.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.194 -07 000000608 INF: FPGA: Recv ZSGSRD 35220
17-03-18 05:46:29.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.204 -07 000000462 INF: FPGA: Recv ZSGSRD 35227
17-03-18 05:46:29.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:46:29.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35233
17-03-18 05:46:29.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.234 -07 000000608 INF: FPGA: Recv ZSGSRD 35231
17-03-18 05:46:29.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.244 -07 000000461 INF: FPGA: Recv ZSGSRD 35236
17-03-18 05:46:29.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.254 -07 000000012 INF: FPGA: Recv ZSGSRD 35232
17-03-18 05:46:29.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:29.264 -07 000000487 INF: FPGA: Recv ZSGSRD 35225
17-03-18 05:46:29.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:29.274 -07 000000382 INF: FPGA: Recv ZPIEZORD 30961
17-03-18 05:46:29.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:29.284 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.4 V.
17-03-18 05:46:29.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35230 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35231 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35220 (-165.7 uncal um), Max = 35237 (-165.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:46:29.284 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35230, posNoise = 7, negNoise = 10
17-03-18 05:46:29.284 -07 000000610 INF: Z Motor: After move to -0.166633, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:29.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:46:29.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:29.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:29.284 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:29.284 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:29.284 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:29.284 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:29.284 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:29.284 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:29.284 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:29.284 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:29.284 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:29.284 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:29.294 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:29.294 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:29.294 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:29.294 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:29.294 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:46:29.304 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:46:29.304 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:46:29.304 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:46:29.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36577 150\n [Camera]
17-03-18 05:46:29.504 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:29.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:29.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:29.954 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:29.954 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:29.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:29.954 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:29.954 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:29.954 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:46:29.954 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:29.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:46:30.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36577 830
17-03-18 05:46:30.294 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:30.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:46:30.354 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:46:30.354 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:30.354 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:46:30.354 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:46:30.354 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:30.354 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:30.354 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:46:30.354 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:30.364 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:46:30.504 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:30.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:30.504 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:30.614 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:30.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:30.624 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:30.624 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:30.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:46:30.624 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:30.624 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:46:30.694 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:30.694 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:30.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36577 150' command took 4 ms to send, 1388 ms to get response, and 1394 ms overall
17-03-18 05:46:30.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:30.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166648345765373. ------
17-03-18 05:46:30.704 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:30.704 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17307 mm
17-03-18 05:46:30.704 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:31.014 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:46:31.014 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:46:31.014 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:31.024 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:31.024 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:46:31.024 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:46:31.024 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:31.024 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:31.024 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 05:46:31.024 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:46:31.034 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:46:31.034 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 05:46:31.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:31.034 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:31.044 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 329 ms to get response, and 335 ms overall
17-03-18 05:46:31.044 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:31.044 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37806, sync = True, waitForSettling = False)
17-03-18 05:46:31.044 -07 000000487 INF: Z Motor: Moving to -0.173065 mm, started at -0.166648 mm, distance = -6.42 um
17-03-18 05:46:31.054 -07 000000487 INF: FPGA: Xmit ZDACW 37806\n [Z Motor]
17-03-18 05:46:31.754 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.019446,
17-03-18 05:46:31.754 -07 000000444 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:46:31.754 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:46:31.754 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:31.754 -07 000000487 INF: FPGA: 'ZDACW 37806' command took 0 ms to send, 691 ms to get response, and 709 ms overall
17-03-18 05:46:31.754 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 701 ms to get response, and 711 ms overall
17-03-18 05:46:31.754 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 711 ms to get response, and 713 ms overall
17-03-18 05:46:31.754 -07 000000012 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:31.754 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:31.754 -07 000000012 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:46:31.774 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:31.774 -07 000000606 INF: FPGA: Recv ZDACR 37806
17-03-18 05:46:31.784 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:46:31.784 -07 000000487 INF: Z Motor: MoveAbsStepped took 737 ms (did NOT wait for settling yet))
17-03-18 05:46:31.784 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:31.794 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:31.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:32.154 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:46:32.154 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 402 ms overall
17-03-18 05:46:32.214 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:32.214 -07 000000591 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:46:32.224 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:32.224 -07 000000012 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:32.224 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:46:32.224 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.845 mm, average velocity = 2.102 mm/sec
17-03-18 05:46:33.174 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:33.174 -07 000000444 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:46:33.184 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:33.184 -07 000000012 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:33.214 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:33.214 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:33.214 -07 000000012 INF: Y Motor: Moved to 72.3481 after 2174 ms (table move)
17-03-18 05:46:33.214 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173065 mm (DAC = 37806)
17-03-18 05:46:33.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.214 -07 000000487 INF: FPGA: Recv ZSGSRD 36231
17-03-18 05:46:33.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:33.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.224 -07 000000591 INF: FPGA: Recv ZSGSRD 36229
17-03-18 05:46:33.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.234 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.234 -07 000000487 INF: FPGA: Recv ZSGSRD 36228
17-03-18 05:46:33.244 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.244 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.244 -07 000000479 INF: FPGA: Recv ZSGSRD 36230
17-03-18 05:46:33.254 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.254 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.254 -07 000000444 INF: FPGA: Recv ZSGSRD 36233
17-03-18 05:46:33.264 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.264 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.264 -07 000000591 INF: FPGA: Recv ZSGSRD 36235
17-03-18 05:46:33.274 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.274 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.274 -07 000000012 INF: FPGA: Recv ZSGSRD 36231
17-03-18 05:46:33.284 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.284 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.284 -07 000000487 INF: FPGA: Recv ZSGSRD 36232
17-03-18 05:46:33.294 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.294 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36225
17-03-18 05:46:33.304 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.304 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:33.304 -07 000000479 INF: FPGA: Recv ZSGSRD 36226
17-03-18 05:46:33.314 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.314 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:33.314 -07 000000591 INF: FPGA: Recv ZPIEZORD 32308
17-03-18 05:46:33.324 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.7 V.
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36230 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36235 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36230, posNoise = 5, negNoise = 5
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: After move to -0.173065, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: Settle wait time = 2174 ms, measure time = 104 ms (allowed 150 ms), total time = 2278 ms
17-03-18 05:46:33.324 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:33.374 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2665 ms
17-03-18 05:46:33.374 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:33.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:33.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:33.374 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:33.374 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:33.374 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:33.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:33.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:33.374 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:33.384 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:33.384 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:33.384 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:46:33.384 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:46:33.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:33.434 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:33.734 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:33.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:33.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:33.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:46:33.774 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:33.774 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:33.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:46:33.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 05:46:33.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:33.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:33.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 05:46:33.874 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:33.874 -07 000000479 INF: Autofocus start
17-03-18 05:46:33.874 -07 000000479 INF: MeasureProfile start
17-03-18 05:46:33.874 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:33.884 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:33.884 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:33.884 -07 000000479 INF: MeasureProfile done
17-03-18 05:46:33.884 -07 000000479 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:46:33.884 -07 000000479 INF: Autofocus finished
17-03-18 05:46:34.084 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:34.084 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:34.084 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173072557907134. ----------
17-03-18 05:46:34.094 -07 000000610 INF: Cycle	141	Tile	16	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:34.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36303, sync = True, waitForSettling = True)
17-03-18 05:46:34.094 -07 000000610 INF: Z Motor: Moving to -0.166184 mm, started at -0.173073 mm, distance = 6.89 um
17-03-18 05:46:34.094 -07 000000610 INF: FPGA: Xmit ZDACW 36303\n [Z Motor]
17-03-18 05:46:34.094 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:46:34.104 -07 000000610 INF: FPGA: 'ZDACW 36303' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:34.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:34.104 -07 000000561 INF: FPGA: Recv ZDACR 36303
17-03-18 05:46:34.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:34.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.264 -07 000000444 INF: FPGA: Recv ZSGSRD 35162
17-03-18 05:46:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.274 -07 000000479 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:46:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.284 -07 000000444 INF: FPGA: Recv ZSGSRD 35159
17-03-18 05:46:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35162
17-03-18 05:46:34.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.304 -07 000000487 INF: FPGA: Recv ZSGSRD 35158
17-03-18 05:46:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35159
17-03-18 05:46:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.324 -07 000000444 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:46:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35163
17-03-18 05:46:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.344 -07 000000487 INF: FPGA: Recv ZSGSRD 35156
17-03-18 05:46:34.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:34.354 -07 000000606 INF: FPGA: Recv ZSGSRD 35158
17-03-18 05:46:34.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:34.364 -07 000000012 INF: FPGA: Recv ZPIEZORD 30880
17-03-18 05:46:34.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:34.374 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-18 05:46:34.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35158 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35158 (-165.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35149 (-165.3 uncal um), Max = 35163 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:46:34.374 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35158, posNoise = 5, negNoise = 9
17-03-18 05:46:34.374 -07 000000610 INF: Z Motor: After move to -0.166184, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:34.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:46:34.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:34.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:34.374 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:34.374 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:34.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:34.374 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:34.374 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:34.374 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:34.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:34.374 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:34.374 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:34.374 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:34.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:46:34.384 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:34.384 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:34.384 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:34.394 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:46:34.394 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:34.394 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:46:34.394 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:34.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36480 150\n [Camera]
17-03-18 05:46:34.594 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:35.044 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:35.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:35.044 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:35.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:35.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:35.044 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:35.054 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:35.054 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 05:46:35.054 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:35.054 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:46:35.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36480 830
17-03-18 05:46:35.384 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:35.444 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:46:35.444 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:46:35.444 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:35.444 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:46:35.444 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:46:35.444 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:35.444 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:35.444 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:46:35.454 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:35.454 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:46:35.604 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:35.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:35.604 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:35.604 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:35.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:35.604 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:35.714 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:35.714 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:46:35.724 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:35.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:46:35.794 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:35.794 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:35.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36480 150' command took 2 ms to send, 1383 ms to get response, and 1394 ms overall
17-03-18 05:46:35.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:35.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166185802491167. ------
17-03-18 05:46:35.794 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:35.794 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17265 mm
17-03-18 05:46:35.794 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:35.804 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:46:35.804 -07 000000487 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 05:46:35.804 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:36.124 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:46:36.124 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:46:36.124 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:36.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:46:36.124 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:46:36.124 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:36.124 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:36.124 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 05:46:36.124 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:36.134 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 05:46:36.144 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37715, sync = True, waitForSettling = False)
17-03-18 05:46:36.144 -07 000000444 INF: Z Motor: Moving to -0.172648 mm, started at -0.166186 mm, distance = -6.46 um
17-03-18 05:46:36.144 -07 000000444 INF: FPGA: Xmit ZDACW 37715\n [Z Motor]
17-03-18 05:46:36.144 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:36.144 -07 000000012 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:46:36.144 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:46:36.144 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 333 ms to get response, and 341 ms overall
17-03-18 05:46:36.144 -07 000000487 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:36.144 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 343 ms to get response, and 344 ms overall
17-03-18 05:46:36.144 -07 000000487 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:36.144 -07 000000487 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:46:36.154 -07 000000444 INF: FPGA: 'ZDACW 37715' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:36.154 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:36.164 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:36.174 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:36.814 -07 000000461 INF: FPGA: Recv ZDACR 37715
17-03-18 05:46:36.814 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:36.814 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:46:36.814 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:36.814 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 650 ms to get response, and 665 ms overall
17-03-18 05:46:36.814 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 630 ms to get response, and 660 ms overall
17-03-18 05:46:36.814 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 640 ms to get response, and 661 ms overall
17-03-18 05:46:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:36.814 -07 000000444 INF: Z Motor: MoveAbsStepped took 670 ms (did NOT wait for settling yet))
17-03-18 05:46:36.864 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:36.864 -07 000000606 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:46:36.874 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:36.874 -07 000000487 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:36.874 -07 000000487 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:46:36.874 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 662 ms, distance = 0.844 mm, average velocity = 1.276 mm/sec
17-03-18 05:46:37.134 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.019446,
17-03-18 05:46:37.824 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:37.824 -07 000000606 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:46:37.834 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:37.834 -07 000000487 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:37.864 -07 000000487 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:37.864 -07 000000487 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:37.864 -07 000000487 INF: Y Motor: Moved to 73.1748 after 2061 ms (table move)
17-03-18 05:46:37.864 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172648 mm (DAC = 37715)
17-03-18 05:46:37.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.874 -07 000000444 INF: FPGA: Recv ZSGSRD 36167
17-03-18 05:46:37.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:46:37.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.874 -07 000000382 INF: FPGA: Recv ZSGSRD 36168
17-03-18 05:46:37.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:37.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.884 -07 000000487 INF: FPGA: Recv ZSGSRD 36158
17-03-18 05:46:37.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.894 -07 000000501 INF: FPGA: Recv ZSGSRD 36167
17-03-18 05:46:37.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.904 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.904 -07 000000487 INF: FPGA: Recv ZSGSRD 36159
17-03-18 05:46:37.914 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.914 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.914 -07 000000461 INF: FPGA: Recv ZSGSRD 36167
17-03-18 05:46:37.924 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.924 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.924 -07 000000487 INF: FPGA: Recv ZSGSRD 36160
17-03-18 05:46:37.934 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.934 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36167
17-03-18 05:46:37.944 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.944 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.944 -07 000000444 INF: FPGA: Recv ZSGSRD 36167
17-03-18 05:46:37.954 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.954 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:37.954 -07 000000501 INF: FPGA: Recv ZSGSRD 36162
17-03-18 05:46:37.964 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.964 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:37.964 -07 000000382 INF: FPGA: Recv ZPIEZORD 32246
17-03-18 05:46:37.974 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.755 V. Piezo Error = -8.7 V.
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36164 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36167 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36158 (-171.7 uncal um), Max = 36168 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36164, posNoise = 4, negNoise = 6
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: After move to -0.172648, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: Settle wait time = 1726 ms, measure time = 103 ms (allowed 150 ms), total time = 1829 ms
17-03-18 05:46:37.974 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:38.024 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2220 ms
17-03-18 05:46:38.024 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:38.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:38.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:38.024 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:38.034 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:38.034 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:38.034 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:38.034 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:38.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:38.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:38.034 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:38.044 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:46:38.044 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:46:38.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:38.084 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:38.384 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:38.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:38.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:38.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:46:38.424 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:38.424 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:38.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:46:38.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:46:38.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:38.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:38.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:46:38.524 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:38.524 -07 000000461 INF: Autofocus start
17-03-18 05:46:38.524 -07 000000461 INF: MeasureProfile start
17-03-18 05:46:38.524 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:38.534 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:38.534 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:38.544 -07 000000461 INF: MeasureProfile done
17-03-18 05:46:38.544 -07 000000461 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:46:38.544 -07 000000461 INF: Autofocus finished
17-03-18 05:46:38.734 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:38.734 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:38.734 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172648559905778. ----------
17-03-18 05:46:38.744 -07 000000610 INF: Cycle	141	Tile	17	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:38.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36266, sync = True, waitForSettling = True)
17-03-18 05:46:38.744 -07 000000610 INF: Z Motor: Moving to -0.166015 mm, started at -0.172649 mm, distance = 6.63 um
17-03-18 05:46:38.744 -07 000000610 INF: FPGA: Xmit ZDACW 36266\n [Z Motor]
17-03-18 05:46:38.744 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:46:38.754 -07 000000610 INF: FPGA: 'ZDACW 36266' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:38.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:38.754 -07 000000382 INF: FPGA: Recv ZDACR 36266
17-03-18 05:46:38.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:38.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.914 -07 000000444 INF: FPGA: Recv ZSGSRD 35128
17-03-18 05:46:38.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:38.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.924 -07 000000382 INF: FPGA: Recv ZSGSRD 35133
17-03-18 05:46:38.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.934 -07 000000501 INF: FPGA: Recv ZSGSRD 35136
17-03-18 05:46:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.944 -07 000000461 INF: FPGA: Recv ZSGSRD 35131
17-03-18 05:46:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35129
17-03-18 05:46:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.964 -07 000000462 INF: FPGA: Recv ZSGSRD 35139
17-03-18 05:46:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.974 -07 000000606 INF: FPGA: Recv ZSGSRD 35137
17-03-18 05:46:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.984 -07 000000382 INF: FPGA: Recv ZSGSRD 35133
17-03-18 05:46:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:38.994 -07 000000487 INF: FPGA: Recv ZSGSRD 35134
17-03-18 05:46:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:39.004 -07 000000462 INF: FPGA: Recv ZSGSRD 35132
17-03-18 05:46:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:39.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:39.014 -07 000000501 INF: FPGA: Recv ZPIEZORD 30842
17-03-18 05:46:39.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:39.024 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.5 V.
17-03-18 05:46:39.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35133 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35133 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35128 (-165.1 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:39.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35133, posNoise = 6, negNoise = 5
17-03-18 05:46:39.024 -07 000000610 INF: Z Motor: After move to -0.166015, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:39.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:46:39.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:39.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:39.024 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:39.024 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:39.024 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:39.024 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:39.024 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:39.024 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:39.024 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:39.024 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:39.024 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:39.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:39.034 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:39.034 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:39.034 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:46:39.034 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:39.044 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:46:39.044 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:39.044 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:46:39.044 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:39.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36442 150\n [Camera]
17-03-18 05:46:39.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:39.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:39.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:39.694 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:39.694 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:39.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:39.704 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:39.704 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) start.
17-03-18 05:46:39.704 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:39.704 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:39.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2340614472, 0x0, 418435064) start.
17-03-18 05:46:39.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36442 830
17-03-18 05:46:40.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:40.094 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:46:40.094 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:46:40.094 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:40.104 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:40.104 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:46:40.104 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2340614472, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:46:40.104 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:46:40.104 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:40.104 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:40.114 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:46:40.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:40.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:40.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:40.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:40.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:40.254 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:40.254 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:40.254 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:46:40.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:40.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:46:40.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:40.444 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:40.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36442 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-18 05:46:40.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:40.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166025197187623. ------
17-03-18 05:46:40.444 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:40.444 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17183 mm
17-03-18 05:46:40.444 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:40.564 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:40.564 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-18 05:46:40.564 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:46:40.564 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:46:40.564 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37535, sync = True, waitForSettling = False)
17-03-18 05:46:40.564 -07 000000461 INF: Z Motor: Moving to -0.171824 mm, started at -0.166025 mm, distance = -5.80 um
17-03-18 05:46:40.574 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:40.574 -07 000000611 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:46:40.584 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:46:40.584 -07 000000424 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:40.584 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:40.584 -07 000000424 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:46:40.584 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:40.594 -07 000000461 INF: FPGA: Xmit ZDACW 37535\n [Z Motor]
17-03-18 05:46:40.594 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:46:40.604 -07 000000461 INF: FPGA: 'ZDACW 37535' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 05:46:40.614 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:40.624 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:40.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:46:40.644 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:46:40.644 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:40.654 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:46:40.654 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:46:40.654 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:40.654 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:40.654 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:46:40.654 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:46:40.664 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:46:40.674 -07 000000625 INF: FPGA: Recv ZDACR 37535
17-03-18 05:46:40.674 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 41 ms to get response, and 71 ms overall
17-03-18 05:46:40.674 -07 000000461 INF: Z Motor: MoveAbsStepped took 106 ms (did NOT wait for settling yet))
17-03-18 05:46:40.784 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:40.784 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:46:40.984 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:46:40.984 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:46:41.024 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:41.034 -07 000000382 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:46:41.034 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:46:41.034 -07 000000424 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:41.034 -07 000000424 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:46:41.034 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.848 mm, average velocity = 2.083 mm/sec
17-03-18 05:46:41.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:41.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:41.984 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:41.984 -07 000000625 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:46:41.994 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:41.994 -07 000000424 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:42.014 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:42.014 -07 000000424 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:42.014 -07 000000424 INF: Y Motor: Moved to 74.0068 after 1449 ms (table move)
17-03-18 05:46:42.014 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171824 mm (DAC = 37535)
17-03-18 05:46:42.014 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36037
17-03-18 05:46:42.024 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 05:46:42.024 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36040
17-03-18 05:46:42.034 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:42.034 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.034 -07 000000382 INF: FPGA: Recv ZSGSRD 36035
17-03-18 05:46:42.044 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.044 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.044 -07 000000382 INF: FPGA: Recv ZSGSRD 36036
17-03-18 05:46:42.054 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.054 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.054 -07 000000625 INF: FPGA: Recv ZSGSRD 36041
17-03-18 05:46:42.064 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.064 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.064 -07 000000382 INF: FPGA: Recv ZSGSRD 36033
17-03-18 05:46:42.074 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.074 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36034
17-03-18 05:46:42.084 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.084 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.084 -07 000000625 INF: FPGA: Recv ZSGSRD 36044
17-03-18 05:46:42.094 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.094 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.094 -07 000000424 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:46:42.104 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.104 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:42.104 -07 000000625 INF: FPGA: Recv ZSGSRD 36034
17-03-18 05:46:42.114 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.114 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:42.114 -07 000000382 INF: FPGA: Recv ZPIEZORD 32043
17-03-18 05:46:42.124 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.8 V.
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36037 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36033 (-170.9 uncal um), Max = 36044 (-171.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36037, posNoise = 7, negNoise = 4
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: After move to -0.171824, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:46:42.124 -07 000000487 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:42.174 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 05:46:42.174 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:42.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:42.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:42.174 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:42.184 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:42.184 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:42.184 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:42.184 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:46:42.184 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:42.184 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:42.184 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:42.194 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:46:42.194 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:46:42.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:42.234 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:42.494 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.98264,
17-03-18 05:46:42.534 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:42.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:42.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:42.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:46:42.574 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:42.574 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:42.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:46:42.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:46:42.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:42.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:42.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:46:42.674 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:42.674 -07 000000424 INF: Autofocus start
17-03-18 05:46:42.674 -07 000000424 INF: MeasureProfile start
17-03-18 05:46:42.674 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:42.684 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:42.684 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:42.684 -07 000000424 INF: MeasureProfile done
17-03-18 05:46:42.684 -07 000000424 INF: X=144  Z correction [um]=0.6646646
17-03-18 05:46:42.684 -07 000000424 INF: Autofocus finished
17-03-18 05:46:42.884 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:42.884 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:42.884 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.171832684963775. ----------
17-03-18 05:46:42.894 -07 000000610 INF: Cycle	141	Tile	18	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:42.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36193, sync = True, waitForSettling = True)
17-03-18 05:46:42.894 -07 000000610 INF: Z Motor: Moving to -0.165681 mm, started at -0.171833 mm, distance = 6.15 um
17-03-18 05:46:42.894 -07 000000610 INF: FPGA: Xmit ZDACW 36193\n [Z Motor]
17-03-18 05:46:42.894 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:46:42.904 -07 000000610 INF: FPGA: 'ZDACW 36193' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:42.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:42.904 -07 000000382 INF: FPGA: Recv ZDACR 36193
17-03-18 05:46:42.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:42.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35080
17-03-18 05:46:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.074 -07 000000461 INF: FPGA: Recv ZSGSRD 35082
17-03-18 05:46:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.084 -07 000000591 INF: FPGA: Recv ZSGSRD 35078
17-03-18 05:46:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.094 -07 000000625 INF: FPGA: Recv ZSGSRD 35078
17-03-18 05:46:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.104 -07 000000487 INF: FPGA: Recv ZSGSRD 35091
17-03-18 05:46:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.114 -07 000000625 INF: FPGA: Recv ZSGSRD 35085
17-03-18 05:46:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.124 -07 000000382 INF: FPGA: Recv ZSGSRD 35073
17-03-18 05:46:43.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35080
17-03-18 05:46:43.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.144 -07 000000382 INF: FPGA: Recv ZSGSRD 35076
17-03-18 05:46:43.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:43.154 -07 000000625 INF: FPGA: Recv ZSGSRD 35083
17-03-18 05:46:43.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:43.164 -07 000000487 INF: FPGA: Recv ZPIEZORD 30821
17-03-18 05:46:43.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:43.174 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.4 V.
17-03-18 05:46:43.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35081 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35080 (-164.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35073 (-164.8 uncal um), Max = 35091 (-164.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:46:43.174 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35081, posNoise = 10, negNoise = 8
17-03-18 05:46:43.174 -07 000000610 INF: Z Motor: After move to -0.165681, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:43.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:46:43.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:43.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:43.174 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:43.174 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:43.174 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:43.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:43.174 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:43.174 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:43.174 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:43.174 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:43.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:43.174 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:43.184 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:46:43.184 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:43.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:43.184 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:43.194 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:46:43.194 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:46:43.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:46:43.194 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:46:43.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36370 150\n [Camera]
17-03-18 05:46:43.394 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:43.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:43.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:43.844 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:43.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:43.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:43.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:43.854 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:43.854 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:46:43.854 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:43.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:46:44.034 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36370 830
17-03-18 05:46:44.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:44.244 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:46:44.244 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:46:44.244 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:44.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:46:44.244 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:46:44.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:44.244 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:44.244 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:46:44.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:44.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:46:44.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:44.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:44.394 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:44.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:44.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:44.404 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:44.404 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:44.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:46:44.404 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:44.404 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:46:44.584 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:44.594 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:44.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36370 150' command took 2 ms to send, 1390 ms to get response, and 1394 ms overall
17-03-18 05:46:44.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:46:44.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165691138156251. ------
17-03-18 05:46:44.594 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:44.594 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17204 mm
17-03-18 05:46:44.594 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:44.604 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:44.604 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:44.604 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:44.604 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37581, sync = True, waitForSettling = False)
17-03-18 05:46:44.604 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:46:44.604 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:46:44.604 -07 000000479 INF: Z Motor: Moving to -0.172035 mm, started at -0.165691 mm, distance = -6.34 um
17-03-18 05:46:44.614 -07 000000479 INF: FPGA: Xmit ZDACW 37581\n [Z Motor]
17-03-18 05:46:44.614 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:46:44.624 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:44.624 -07 000000479 INF: FPGA: 'ZDACW 37581' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:46:44.624 -07 000000382 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:46:44.634 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:46:44.634 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:44.634 -07 000000424 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:44.634 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:44.634 -07 000000424 INF: Y Motor: Moving 1353 steps-32
17-03-18 05:46:44.634 -07 000000382 INF: FPGA: Recv ZDACR 37581
17-03-18 05:46:44.644 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:46:44.644 -07 000000479 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:46:44.644 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:44.804 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:44.804 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:46:44.804 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:46:44.804 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:44.804 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:44.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:46:44.804 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:46:44.804 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:44.804 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:46:44.814 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:46:44.814 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:46:44.814 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:46:45.014 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:46:45.014 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:46:45.044 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:45.054 -07 000000591 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:46:45.064 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:45.064 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:45.064 -07 000000424 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:46:45.064 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-18 05:46:46.014 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:46.014 -07 000000012 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:46:46.024 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:46.024 -07 000000424 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:46.054 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:46.054 -07 000000424 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:46:46.054 -07 000000424 INF: Y Motor: Moved to 74.8306 after 1448 ms (table move)
17-03-18 05:46:46.054 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172035 mm (DAC = 37581)
17-03-18 05:46:46.064 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.064 -07 000000012 INF: FPGA: Recv ZSGSRD 36070
17-03-18 05:46:46.074 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:46:46.074 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.074 -07 000000012 INF: FPGA: Recv ZSGSRD 36067
17-03-18 05:46:46.084 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.084 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.084 -07 000000012 INF: FPGA: Recv ZSGSRD 36071
17-03-18 05:46:46.094 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.094 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.094 -07 000000012 INF: FPGA: Recv ZSGSRD 36068
17-03-18 05:46:46.104 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.104 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.104 -07 000000012 INF: FPGA: Recv ZSGSRD 36070
17-03-18 05:46:46.114 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.114 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.114 -07 000000012 INF: FPGA: Recv ZSGSRD 36067
17-03-18 05:46:46.124 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.124 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.124 -07 000000424 INF: FPGA: Recv ZSGSRD 36069
17-03-18 05:46:46.134 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.134 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.134 -07 000000012 INF: FPGA: Recv ZSGSRD 36069
17-03-18 05:46:46.144 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.144 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.144 -07 000000424 INF: FPGA: Recv ZSGSRD 36068
17-03-18 05:46:46.154 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.154 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:46.154 -07 000000424 INF: FPGA: Recv ZSGSRD 36073
17-03-18 05:46:46.164 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.164 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:46.164 -07 000000012 INF: FPGA: Recv ZPIEZORD 32129
17-03-18 05:46:46.174 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.7 V.
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36069 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36069 (-171.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36067 (-171.1 uncal um), Max = 36073 (-171.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36069, posNoise = 4, negNoise = 2
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: After move to -0.172035, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: Settle wait time = 1452 ms, measure time = 116 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:46:46.174 -07 000000487 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:46.214 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:46:46.214 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:46.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:46.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:46.214 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:46.214 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:46.214 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:46.214 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:46.214 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:46.214 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:46.224 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:46.224 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:46.224 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:46:46.224 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:46:46.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:46.274 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:46.574 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:46.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:46.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:46.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 05:46:46.614 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:46.614 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:46.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:46:46.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:46:46.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:46.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:46:46.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:46:46.714 -07 000000487 INF: Autofocus start
17-03-18 05:46:46.714 -07 000000487 INF: MeasureProfile start
17-03-18 05:46:46.714 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:46.714 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:46.724 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:46.724 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:46.724 -07 000000487 INF: MeasureProfile done
17-03-18 05:46:46.724 -07 000000487 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:46:46.724 -07 000000487 INF: Autofocus finished
17-03-18 05:46:46.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:46.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:46.924 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:46.924 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:46:46.934 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.172038259752311. ----------
17-03-18 05:46:46.934 -07 000000610 INF: Cycle	141	Tile	19	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:46.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36114, sync = True, waitForSettling = True)
17-03-18 05:46:46.934 -07 000000610 INF: Z Motor: Moving to -0.165319 mm, started at -0.172038 mm, distance = 6.72 um
17-03-18 05:46:46.934 -07 000000610 INF: FPGA: Xmit ZDACW 36114\n [Z Motor]
17-03-18 05:46:46.934 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:46:46.944 -07 000000610 INF: FPGA: 'ZDACW 36114' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:46:46.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:46.944 -07 000000012 INF: FPGA: Recv ZDACR 36114
17-03-18 05:46:46.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:46.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35029
17-03-18 05:46:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.114 -07 000000561 INF: FPGA: Recv ZSGSRD 35021
17-03-18 05:46:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35025
17-03-18 05:46:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.134 -07 000000012 INF: FPGA: Recv ZSGSRD 35028
17-03-18 05:46:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.144 -07 000000561 INF: FPGA: Recv ZSGSRD 35029
17-03-18 05:46:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.154 -07 000000487 INF: FPGA: Recv ZSGSRD 35026
17-03-18 05:46:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35018
17-03-18 05:46:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.174 -07 000000487 INF: FPGA: Recv ZSGSRD 35028
17-03-18 05:46:47.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.184 -07 000000561 INF: FPGA: Recv ZSGSRD 35024
17-03-18 05:46:47.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:47.194 -07 000000487 INF: FPGA: Recv ZSGSRD 35026
17-03-18 05:46:47.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:47.204 -07 000000012 INF: FPGA: Recv ZPIEZORD 30740
17-03-18 05:46:47.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:47.214 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.511 V. Piezo Error = -9.4 V.
17-03-18 05:46:47.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35025 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35026 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35018 (-164.4 uncal um), Max = 35029 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:46:47.214 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35025, posNoise = 4, negNoise = 7
17-03-18 05:46:47.214 -07 000000610 INF: Z Motor: After move to -0.165319, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:47.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:46:47.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:47.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:47.214 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:47.214 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:47.214 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:47.214 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:47.214 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:47.214 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:47.214 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:47.214 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:47.214 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:47.214 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:47.224 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:47.224 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:47.224 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:46:47.224 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:47.234 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:46:47.234 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:47.234 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:46:47.234 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:46:47.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36291 150\n [Camera]
17-03-18 05:46:47.434 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:47.854 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.975845,
17-03-18 05:46:47.884 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:47.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:47.884 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:47.884 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:47.884 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:46:47.884 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:47.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:47.884 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:47.894 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:47.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:46:48.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36291 830
17-03-18 05:46:48.224 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 981
17-03-18 05:46:48.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:46:48.284 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:46:48.284 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:48.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:46:48.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:46:48.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:48.284 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:48.284 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:46:48.284 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:48.294 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:46:48.444 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:48.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:48.444 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:48.444 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:48.444 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:46:48.444 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:48.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:48.444 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:48.444 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:48.444 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:46:48.634 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:46:48.634 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:48.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36291 150' command took 2 ms to send, 1384 ms to get response, and 1393 ms overall
17-03-18 05:46:48.854 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:46:48.854 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:46:48.854 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:48.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 05:46:48.854 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:46:48.854 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:48.854 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:48.854 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:46:48.854 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:46:48.854 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:46:48.864 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:46:48.984 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 127 ms.
17-03-18 05:46:48.984 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:46:49.024 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 05:46:49.034 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:46:49.034 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:46:49.034 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 05:46:49.044 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:46:49.044 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:46:49.544 -07 000000487 INF: FPGA: Recv EMIN
17-03-18 05:46:49.544 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:46:49.544 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:46:49.544 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-18 05:46:49.554 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:49.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:46:49.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.165331382276312. ------
17-03-18 05:46:49.554 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:49.554 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 05:46:49.554 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:49.564 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:49.564 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:49.564 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:46:49.564 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 05:46:49.564 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30427, sync = True, waitForSettling = False)
17-03-18 05:46:49.564 -07 000000487 INF: Z Motor: Moving to -0.139286 mm, started at -0.165331 mm, distance = 26.05 um
17-03-18 05:46:49.564 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:49.574 -07 000000487 INF: FPGA: Xmit ZDACW 30427\n [Z Motor]
17-03-18 05:46:49.574 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:46:49.584 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:49.584 -07 000000487 INF: FPGA: 'ZDACW 30427' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:46:49.584 -07 000000479 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:46:49.594 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:49.594 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:46:49.594 -07 000000455 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:49.594 -07 000000625 INF: FPGA: Recv ZDACR 30427
17-03-18 05:46:49.594 -07 000000455 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:46:49.594 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:46:49.604 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:46:49.604 -07 000000487 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:46:49.604 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:46:49.764 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:49.764 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 05:46:51.224 -07 000000438 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 05:46:51.224 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1631 ms overall
17-03-18 05:46:51.234 -07 000000455 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:46:51.234 -07 000000455 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:46:51.234 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.918 mm, average velocity = 9.147 mm/sec
17-03-18 05:46:51.904 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:53.214 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.990831,
17-03-18 05:46:54.084 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:54.084 -07 000000611 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:46:54.094 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:54.094 -07 000000455 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:54.134 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:54.134 -07 000000455 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:46:54.134 -07 000000455 INF: Y Motor: Moved to 59.9097 after 4570 ms
17-03-18 05:46:54.134 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139286 mm (DAC = 30427)
17-03-18 05:46:54.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.134 -07 000000625 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:46:54.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:46:54.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.144 -07 000000455 INF: FPGA: Recv ZSGSRD 30969
17-03-18 05:46:54.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:46:54.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.164 -07 000000625 INF: FPGA: Recv ZSGSRD 30978
17-03-18 05:46:54.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.174 -07 000000487 INF: FPGA: Recv ZSGSRD 30968
17-03-18 05:46:54.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.184 -07 000000382 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:46:54.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.194 -07 000000382 INF: FPGA: Recv ZSGSRD 30971
17-03-18 05:46:54.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:46:54.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.214 -07 000000479 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:46:54.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:54.224 -07 000000462 INF: FPGA: Recv ZSGSRD 30968
17-03-18 05:46:54.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.234 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:54.234 -07 000000611 INF: FPGA: Recv ZPIEZORD 26467
17-03-18 05:46:54.244 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.9 V.
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30972 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30968 (-138.5 uncal um), Max = 30978 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30972, posNoise = 6, negNoise = 4
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: After move to -0.139286, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: Settle wait time = 4573 ms, measure time = 105 ms (allowed 150 ms), total time = 4678 ms
17-03-18 05:46:54.244 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:54.294 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4733 ms
17-03-18 05:46:54.294 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:54.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:54.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:54.294 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:54.294 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:54.294 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:54.294 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:54.294 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:54.294 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:46:54.314 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 05:46:54.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:54.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:54.314 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:54.324 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:46:54.324 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 05:46:54.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:54.374 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:46:54.674 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:46:54.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:46:54.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:54.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:46:54.714 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:54.714 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:54.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 05:46:54.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:46:54.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:54.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:54.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:46:54.814 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:54.814 -07 000000438 INF: Image SNR check: start
17-03-18 05:46:54.814 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:54.824 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:54.824 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:54.834 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=119.56]
17-03-18 05:46:54.834 -07 000000438 INF: Autofocus start
17-03-18 05:46:54.834 -07 000000438 INF: MeasureProfile start
17-03-18 05:46:54.844 -07 000000438 INF: MeasureProfile done
17-03-18 05:46:54.844 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:46:54.844 -07 000000438 INF: Autofocus finished
17-03-18 05:46:55.024 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:55.024 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:55.024 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139294050465755. ----------
17-03-18 05:46:55.034 -07 000000610 INF: Cycle	141	Tile	1	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:55.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-18 05:46:55.034 -07 000000610 INF: Z Motor: Moving to -0.132529 mm, started at -0.139294 mm, distance = 6.76 um
17-03-18 05:46:55.034 -07 000000610 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-18 05:46:55.034 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:46:55.044 -07 000000610 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:55.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:55.044 -07 000000424 INF: FPGA: Recv ZDACR 28951
17-03-18 05:46:55.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:55.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:46:55.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:55.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.214 -07 000000424 INF: FPGA: Recv ZSGSRD 29923
17-03-18 05:46:55.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:46:55.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.234 -07 000000625 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:46:55.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.244 -07 000000625 INF: FPGA: Recv ZSGSRD 29922
17-03-18 05:46:55.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.254 -07 000000625 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:46:55.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.264 -07 000000479 INF: FPGA: Recv ZSGSRD 29921
17-03-18 05:46:55.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.274 -07 000000625 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:46:55.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:46:55.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:55.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29923
17-03-18 05:46:55.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:55.304 -07 000000479 INF: FPGA: Recv ZPIEZORD 25320
17-03-18 05:46:55.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:55.314 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -10.1 V.
17-03-18 05:46:55.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29916 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29914 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:46:55.314 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 5, negNoise = 4
17-03-18 05:46:55.314 -07 000000610 INF: Z Motor: After move to -0.132529, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:55.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:46:55.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:55.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:55.314 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:55.314 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:55.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:55.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:55.314 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:46:55.314 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:55.314 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:55.314 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:55.314 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:55.314 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:55.324 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:46:55.324 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:55.334 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 05:46:55.334 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:46:55.344 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 25 ms.
17-03-18 05:46:55.344 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:55.344 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:46:55.344 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:55.354 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:46:55.354 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 05:46:55.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29128 150\n [Camera]
17-03-18 05:46:55.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:46:56.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:46:56.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:46:56.004 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:56.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:46:56.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:46:56.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:56.004 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:56.004 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:46:56.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:56.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:46:56.194 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29128 830
17-03-18 05:46:56.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:46:56.394 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:46:56.394 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:46:56.394 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:56.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:46:56.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:46:56.394 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:56.394 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:56.394 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:46:56.404 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:56.414 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:46:56.554 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:46:56.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:46:56.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:46:56.564 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:46:56.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:46:56.564 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:46:56.674 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:46:56.674 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:46:56.674 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:46:56.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:46:56.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:46:56.744 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:46:56.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29128 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-18 05:46:56.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:46:56.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132522930868339. ------
17-03-18 05:46:56.754 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:56.754 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13894 mm
17-03-18 05:46:56.754 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:46:56.754 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30352, sync = True, waitForSettling = False)
17-03-18 05:46:56.754 -07 000000438 INF: Z Motor: Moving to -0.138943 mm, started at -0.132523 mm, distance = -6.42 um
17-03-18 05:46:56.754 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:46:56.754 -07 000000625 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:46:56.754 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:56.764 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:56.764 -07 000000438 INF: FPGA: Xmit ZDACW 30352\n [Z Motor]
17-03-18 05:46:56.764 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:46:56.774 -07 000000438 INF: FPGA: 'ZDACW 30352' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:46:56.774 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:46:56.784 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:56.784 -07 000000462 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:46:56.794 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:56.794 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:46:56.794 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:56.794 -07 000000625 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:46:56.794 -07 000000625 INF: Y Motor: Moving 1333 steps0
17-03-18 05:46:56.794 -07 000000479 INF: FPGA: Recv ZDACR 30352
17-03-18 05:46:56.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:46:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:46:56.804 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:46:56.804 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:46:56.804 -07 000000438 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:46:56.974 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:46:56.974 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 215 ms overall
17-03-18 05:46:57.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:46:57.064 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:46:57.064 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:57.074 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:57.074 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:46:57.074 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:46:57.074 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:57.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:46:57.074 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 05:46:57.074 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 05:46:57.184 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:46:57.184 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 05:46:57.224 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:57.224 -07 000000455 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:46:57.234 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:57.234 -07 000000625 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:57.234 -07 000000625 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:46:57.234 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.833 mm, average velocity = 2.141 mm/sec
17-03-18 05:46:58.184 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:46:58.184 -07 000000438 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:46:58.194 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.194 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:46:58.224 -07 000000625 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:46:58.224 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:46:58.224 -07 000000625 INF: Y Motor: Moved to 60.7319 after 1467 ms (table move)
17-03-18 05:46:58.224 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138943 mm (DAC = 30352)
17-03-18 05:46:58.224 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.234 -07 000000625 INF: FPGA: Recv ZSGSRD 30928
17-03-18 05:46:58.234 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:46:58.234 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.234 -07 000000625 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:46:58.244 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:46:58.244 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.244 -07 000000625 INF: FPGA: Recv ZSGSRD 30918
17-03-18 05:46:58.254 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.264 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.264 -07 000000625 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:46:58.274 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:46:58.274 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.274 -07 000000625 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:46:58.284 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.284 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.284 -07 000000625 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:46:58.294 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.294 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:46:58.304 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.304 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.304 -07 000000455 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:46:58.314 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.314 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.314 -07 000000455 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:46:58.324 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.324 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:58.324 -07 000000455 INF: FPGA: Recv ZSGSRD 30922
17-03-18 05:46:58.334 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.334 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:58.334 -07 000000455 INF: FPGA: Recv ZPIEZORD 26652
17-03-18 05:46:58.344 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30917 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30907 (-138.1 uncal um), Max = 30928 (-138.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30917, posNoise = 11, negNoise = 10
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: After move to -0.138943, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: Settle wait time = 1471 ms, measure time = 112 ms (allowed 150 ms), total time = 1583 ms
17-03-18 05:46:58.344 -07 000000611 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 05:46:58.384 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:46:58.384 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:46:58.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:58.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:58.384 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:58.384 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:58.384 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:46:58.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:58.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:58.384 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:46:58.394 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:58.394 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:46:58.404 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:46:58.404 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:46:58.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:46:58.454 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:46:58.574 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.02213,
17-03-18 05:46:58.754 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:46:58.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:46:58.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:46:58.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 05:46:58.794 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:46:58.794 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:46:58.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:46:58.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:46:58.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:46:58.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:46:58.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:46:58.894 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:46:58.894 -07 000000461 INF: Autofocus start
17-03-18 05:46:58.894 -07 000000461 INF: MeasureProfile start
17-03-18 05:46:58.894 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:46:58.904 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:46:58.904 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:46:58.904 -07 000000461 INF: MeasureProfile done
17-03-18 05:46:58.904 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:46:58.904 -07 000000461 INF: Autofocus finished
17-03-18 05:46:59.104 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:46:59.104 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:46:59.104 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138940718797959. ----------
17-03-18 05:46:59.104 -07 000000610 INF: Cycle	141	Tile	2	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:46:59.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-18 05:46:59.114 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138941 mm, distance = 6.89 um
17-03-18 05:46:59.114 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-18 05:46:59.114 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:46:59.124 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:46:59.124 -07 000000462 INF: FPGA: Recv ZDACR 28847
17-03-18 05:46:59.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:46:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.284 -07 000000479 INF: FPGA: Recv ZSGSRD 29841
17-03-18 05:46:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:46:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.294 -07 000000462 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:46:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:46:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:46:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:46:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.334 -07 000000611 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:46:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.344 -07 000000625 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:46:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.354 -07 000000625 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:46:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.364 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:46:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:46:59.374 -07 000000625 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:46:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:46:59.384 -07 000000611 INF: FPGA: Recv ZPIEZORD 25242
17-03-18 05:46:59.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:46:59.394 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 05:46:59.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:46:59.394 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 6, negNoise = 5
17-03-18 05:46:59.394 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:46:59.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:46:59.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:46:59.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:46:59.394 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:46:59.394 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:46:59.394 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:46:59.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:46:59.394 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:46:59.394 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:46:59.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:46:59.394 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:46:59.394 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:46:59.394 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:46:59.404 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:46:59.404 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:46:59.404 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:46:59.404 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:46:59.414 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:46:59.414 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:59.414 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:46:59.414 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:46:59.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29023 150\n [Camera]
17-03-18 05:46:59.614 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:00.064 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:00.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:00.064 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:00.064 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:00.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:00.064 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:00.074 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:00.074 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:47:00.074 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:00.074 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:47:00.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 830
17-03-18 05:47:00.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:00.464 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:47:00.464 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:47:00.464 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:00.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:47:00.464 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:47:00.464 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:00.464 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:00.464 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:00.464 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:47:00.474 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:47:00.624 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:00.624 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:00.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:00.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:00.624 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:00.624 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:00.624 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:47:00.624 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:00.624 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:47:00.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:47:00.814 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:00.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29023 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-18 05:47:00.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:00.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132060387594133. ------
17-03-18 05:47:00.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:00.824 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13888 mm
17-03-18 05:47:00.824 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:00.824 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:00.824 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:47:00.824 -07 000000479 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:47:00.824 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30338, sync = True, waitForSettling = False)
17-03-18 05:47:00.824 -07 000000611 INF: Z Motor: Moving to -0.138878 mm, started at -0.132060 mm, distance = -6.82 um
17-03-18 05:47:00.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:00.834 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:00.834 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:47:00.844 -07 000000611 INF: FPGA: Xmit ZDACW 30338\n [Z Motor]
17-03-18 05:47:00.844 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:47:00.844 -07 000000479 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:00.844 -07 000000479 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:00.844 -07 000000479 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:47:00.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:47:00.854 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:00.854 -07 000000611 INF: FPGA: 'ZDACW 30338' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:47:00.864 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:00.874 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:00.874 -07 000000461 INF: FPGA: Recv ZDACR 30338
17-03-18 05:47:00.884 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:00.884 -07 000000611 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:47:01.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:47:01.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:47:01.024 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:01.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:47:01.024 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:47:01.024 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:01.034 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:01.034 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:47:01.034 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:47:01.034 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:47:01.054 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:01.054 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:47:01.234 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:47:01.234 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:47:01.284 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:01.294 -07 000000625 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:47:01.294 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:47:01.294 -07 000000479 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:01.294 -07 000000479 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:47:01.294 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 05:47:01.794 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:02.244 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:02.244 -07 000000012 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:47:02.254 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:02.254 -07 000000479 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:02.284 -07 000000479 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:02.284 -07 000000479 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:02.284 -07 000000479 INF: Y Motor: Moved to 61.5625 after 1458 ms (table move)
17-03-18 05:47:02.284 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138878 mm (DAC = 30338)
17-03-18 05:47:02.284 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.284 -07 000000462 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:47:02.294 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:47:02.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.304 -07 000000625 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:47:02.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:02.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:47:02.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.324 -07 000000591 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:47:02.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.334 -07 000000591 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:47:02.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:47:02.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.344 -07 000000012 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:47:02.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.354 -07 000000012 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:47:02.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.364 -07 000000625 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:47:02.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.374 -07 000000461 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:47:02.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:02.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:47:02.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.394 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:02.394 -07 000000461 INF: FPGA: Recv ZPIEZORD 26675
17-03-18 05:47:02.404 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30910 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30919 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30910, posNoise = 9, negNoise = 7
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: After move to -0.138878, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: Settle wait time = 1460 ms, measure time = 116 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:47:02.404 -07 000000382 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:02.444 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:47:02.444 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:02.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:02.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:02.444 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:02.444 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:02.444 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:02.444 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:02.444 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:47:02.444 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:02.454 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:02.454 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:02.464 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:47:02.464 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:47:02.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:02.514 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:02.814 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:02.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:02.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:02.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:02.854 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:02.854 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:02.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 05:47:02.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:47:02.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:02.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:02.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:47:02.954 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:02.954 -07 000000382 INF: Autofocus start
17-03-18 05:47:02.954 -07 000000382 INF: MeasureProfile start
17-03-18 05:47:02.954 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:02.964 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:02.964 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:02.964 -07 000000382 INF: MeasureProfile done
17-03-18 05:47:02.964 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:47:02.964 -07 000000382 INF: Autofocus finished
17-03-18 05:47:03.164 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:03.164 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:03.164 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138895749312966. ----------
17-03-18 05:47:03.164 -07 000000610 INF: Cycle	141	Tile	3	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:03.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28862, sync = True, waitForSettling = True)
17-03-18 05:47:03.174 -07 000000610 INF: Z Motor: Moving to -0.132122 mm, started at -0.138896 mm, distance = 6.77 um
17-03-18 05:47:03.174 -07 000000610 INF: FPGA: Xmit ZDACW 28862\n [Z Motor]
17-03-18 05:47:03.174 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:47:03.184 -07 000000610 INF: FPGA: 'ZDACW 28862' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:03.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:03.184 -07 000000625 INF: FPGA: Recv ZDACR 28862
17-03-18 05:47:03.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.344 -07 000000611 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:47:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.354 -07 000000382 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:47:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.364 -07 000000479 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:47:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.374 -07 000000625 INF: FPGA: Recv ZSGSRD 29856
17-03-18 05:47:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.384 -07 000000611 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:47:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:47:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.404 -07 000000625 INF: FPGA: Recv ZSGSRD 29856
17-03-18 05:47:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:47:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.424 -07 000000625 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:47:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:03.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:47:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:03.444 -07 000000625 INF: FPGA: Recv ZPIEZORD 25323
17-03-18 05:47:03.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:03.454 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.9 V.
17-03-18 05:47:03.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29855 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29851 (-131.3 uncal um), Max = 29863 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:03.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 8, negNoise = 4
17-03-18 05:47:03.454 -07 000000610 INF: Z Motor: After move to -0.132122, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:03.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:47:03.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:03.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:03.454 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:03.454 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:03.454 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:03.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:03.454 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:03.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:03.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:03.454 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:03.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:03.454 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:03.464 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:03.464 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:03.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:47:03.464 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:03.464 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:47:03.464 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:47:03.474 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:47:03.474 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:47:03.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29039 150\n [Camera]
17-03-18 05:47:03.674 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:03.934 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.999021,
17-03-18 05:47:04.114 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:04.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:04.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:04.114 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:04.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:47:04.124 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:04.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:04.124 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:04.124 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:04.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:47:04.314 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29039 830
17-03-18 05:47:04.454 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:04.504 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:47:04.504 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:47:04.504 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:04.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:47:04.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:47:04.504 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:04.504 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:04.504 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:47:04.504 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:04.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:47:04.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:04.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:04.674 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:04.674 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:04.674 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:47:04.674 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:04.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:04.684 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:04.684 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:04.684 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:47:04.864 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:04.864 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:04.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29039 150' command took 2 ms to send, 1386 ms to get response, and 1394 ms overall
17-03-18 05:47:04.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:04.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132118205503408. ------
17-03-18 05:47:04.874 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:04.874 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13863 mm
17-03-18 05:47:04.874 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:05.064 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:47:05.064 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:47:05.064 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:05.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:47:05.064 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:47:05.064 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:05.064 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:05.074 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:47:05.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:05.074 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:47:05.084 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:47:05.084 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:47:05.084 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:05.084 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:05.084 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 205 ms to get response, and 213 ms overall
17-03-18 05:47:05.084 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30284, sync = True, waitForSettling = False)
17-03-18 05:47:05.084 -07 000000611 INF: Z Motor: Moving to -0.138631 mm, started at -0.132118 mm, distance = -6.51 um
17-03-18 05:47:05.094 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:05.104 -07 000000611 INF: FPGA: Xmit ZDACW 30284\n [Z Motor]
17-03-18 05:47:05.814 -07 000000608 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:47:05.814 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:47:05.814 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:05.814 -07 000000611 INF: FPGA: 'ZDACW 30284' command took 0 ms to send, 700 ms to get response, and 724 ms overall
17-03-18 05:47:05.814 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:05.814 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 710 ms to get response, and 724 ms overall
17-03-18 05:47:05.814 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 720 ms to get response, and 725 ms overall
17-03-18 05:47:05.814 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:05.814 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:05.814 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:47:05.814 -07 000000606 INF: FPGA: Recv ZDACR 30284
17-03-18 05:47:05.824 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:05.824 -07 000000611 INF: Z Motor: MoveAbsStepped took 733 ms (did NOT wait for settling yet))
17-03-18 05:47:05.824 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:06.194 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:47:06.194 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 05:47:06.244 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:06.254 -07 000000608 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:47:06.264 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:06.264 -07 000000501 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:06.264 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:47:06.264 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 05:47:06.794 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:07.214 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:07.214 -07 000000608 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:47:07.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:07.224 -07 000000501 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:07.254 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:07.254 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:07.254 -07 000000501 INF: Y Motor: Moved to 62.3940 after 2167 ms (table move)
17-03-18 05:47:07.254 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138631 mm (DAC = 30284)
17-03-18 05:47:07.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30876
17-03-18 05:47:07.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:07.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:47:07.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30860
17-03-18 05:47:07.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.284 -07 000000424 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:47:07.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.294 -07 000000487 INF: FPGA: Recv ZSGSRD 30883
17-03-18 05:47:07.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.304 -07 000000608 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:47:07.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.314 -07 000000487 INF: FPGA: Recv ZSGSRD 30868
17-03-18 05:47:07.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.324 -07 000000438 INF: FPGA: Recv ZSGSRD 30872
17-03-18 05:47:07.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30863
17-03-18 05:47:07.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:07.344 -07 000000611 INF: FPGA: Recv ZSGSRD 30871
17-03-18 05:47:07.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.354 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:07.354 -07 000000424 INF: FPGA: Recv ZPIEZORD 26695
17-03-18 05:47:07.364 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.2 V.
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30869 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30868 (-137.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30860 (-137.8 uncal um), Max = 30883 (-137.9 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30869, posNoise = 14, negNoise = 9
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: After move to -0.138631, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: Settle wait time = 2169 ms, measure time = 104 ms (allowed 150 ms), total time = 2273 ms
17-03-18 05:47:07.364 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:07.414 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2537 ms
17-03-18 05:47:07.414 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:07.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:07.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:07.424 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:07.424 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:07.424 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:07.424 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:07.424 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:07.424 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:07.434 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:47:07.434 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:07.444 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:47:07.444 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:47:07.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:07.494 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:07.784 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:07.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:07.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:07.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) start.
17-03-18 05:47:07.834 -07 000000438 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:47:07.834 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:07.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 05:47:07.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:47:07.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:07.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:07.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:47:07.934 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:07.934 -07 000000438 INF: Autofocus start
17-03-18 05:47:07.934 -07 000000438 INF: MeasureProfile start
17-03-18 05:47:07.934 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:07.944 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:07.944 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:07.944 -07 000000438 INF: MeasureProfile done
17-03-18 05:47:07.944 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:47:07.944 -07 000000438 INF: Autofocus finished
17-03-18 05:47:08.144 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:08.144 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:47:08.144 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.138632356615154. ----------
17-03-18 05:47:08.154 -07 000000610 INF: Cycle	141	Tile	4	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:08.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = True)
17-03-18 05:47:08.154 -07 000000610 INF: Z Motor: Moving to -0.131797 mm, started at -0.138632 mm, distance = 6.84 um
17-03-18 05:47:08.154 -07 000000610 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-18 05:47:08.154 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:47:08.164 -07 000000610 INF: FPGA: 'ZDACW 28791' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:08.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:08.164 -07 000000608 INF: FPGA: Recv ZDACR 28791
17-03-18 05:47:08.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.324 -07 000000611 INF: FPGA: Recv ZSGSRD 29806
17-03-18 05:47:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.334 -07 000000608 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:47:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.344 -07 000000611 INF: FPGA: Recv ZSGSRD 29806
17-03-18 05:47:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29806
17-03-18 05:47:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29799
17-03-18 05:47:08.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.374 -07 000000608 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:47:08.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.384 -07 000000611 INF: FPGA: Recv ZSGSRD 29809
17-03-18 05:47:08.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29811
17-03-18 05:47:08.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.404 -07 000000487 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:47:08.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:08.414 -07 000000608 INF: FPGA: Recv ZSGSRD 29805
17-03-18 05:47:08.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:08.424 -07 000000611 INF: FPGA: Recv ZPIEZORD 25277
17-03-18 05:47:08.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:08.434 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.9 V.
17-03-18 05:47:08.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29799 (-131.0 uncal um), Max = 29811 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:47:08.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 6, negNoise = 6
17-03-18 05:47:08.434 -07 000000610 INF: Z Motor: After move to -0.131797, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:08.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:47:08.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:08.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:08.434 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:08.434 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:08.434 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:08.434 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:08.434 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:08.434 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:08.434 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:08.434 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:08.434 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:47:08.434 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:08.444 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:08.444 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:08.444 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:08.444 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:08.454 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:08.454 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:47:08.454 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:47:08.454 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:47:08.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28968 150\n [Camera]
17-03-18 05:47:08.664 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:09.104 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:09.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:09.104 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:09.104 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:09.104 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:47:09.104 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:09.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:09.104 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:09.104 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:09.104 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:47:09.294 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.973092,
17-03-18 05:47:09.294 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28968 830
17-03-18 05:47:09.444 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:09.494 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:47:09.494 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:47:09.494 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:09.494 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:09.494 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:47:09.494 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:47:09.494 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:09.504 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:09.504 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:47:09.504 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:47:09.664 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:09.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:09.664 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:09.664 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:09.664 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:47:09.664 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:09.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:09.664 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:09.664 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:09.664 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:47:09.854 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:09.854 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:09.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28968 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-18 05:47:09.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:09.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.13179699489632. ------
17-03-18 05:47:09.864 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:10.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:47:10.064 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:47:10.064 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:10.074 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:47:10.074 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:47:10.074 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:10.074 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:10.074 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:47:10.074 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:47:10.084 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:47:10.084 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13846 mm
17-03-18 05:47:10.084 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:10.094 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:10.094 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 228 ms overall
17-03-18 05:47:10.094 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:10.094 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:47:10.094 -07 000000487 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 05:47:10.104 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:10.814 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30246, sync = True, waitForSettling = False)
17-03-18 05:47:10.814 -07 000000455 INF: Z Motor: Moving to -0.138457 mm, started at -0.131797 mm, distance = -6.66 um
17-03-18 05:47:10.814 -07 000000455 INF: FPGA: Xmit ZDACW 30246\n [Z Motor]
17-03-18 05:47:11.814 -07 000000444 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:47:11.814 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:11.814 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:47:11.814 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:11.814 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1710 ms to get response, and 1719 ms overall
17-03-18 05:47:11.814 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1700 ms to get response, and 1718 ms overall
17-03-18 05:47:11.814 -07 000000487 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:11.814 -07 000000455 INF: FPGA: 'ZDACW 30246' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-18 05:47:11.814 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:11.814 -07 000000444 INF: FPGA: Recv ZDACR 30246
17-03-18 05:47:11.814 -07 000000487 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:11.814 -07 000000487 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:47:11.824 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:11.824 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:11.824 -07 000000455 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-18 05:47:12.194 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:47:12.194 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:47:12.254 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:12.254 -07 000000455 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:47:12.264 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:12.264 -07 000000487 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:12.264 -07 000000487 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:47:12.264 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-18 05:47:13.214 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:13.214 -07 000000444 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:47:13.224 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.224 -07 000000487 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:13.254 -07 000000487 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:13.254 -07 000000487 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:13.254 -07 000000487 INF: Y Motor: Moved to 63.2227 after 3159 ms (table move)
17-03-18 05:47:13.254 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138457 mm (DAC = 30246)
17-03-18 05:47:13.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30845
17-03-18 05:47:13.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:47:13.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.264 -07 000000487 INF: FPGA: Recv ZSGSRD 30853
17-03-18 05:47:13.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.274 -07 000000012 INF: FPGA: Recv ZSGSRD 30844
17-03-18 05:47:13.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.284 -07 000000444 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:47:13.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.294 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.294 -07 000000012 INF: FPGA: Recv ZSGSRD 30836
17-03-18 05:47:13.304 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.304 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.304 -07 000000438 INF: FPGA: Recv ZSGSRD 30839
17-03-18 05:47:13.314 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.314 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.314 -07 000000012 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:47:13.324 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.344 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.344 -07 000000444 INF: FPGA: Recv ZSGSRD 30848
17-03-18 05:47:13.354 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:13.354 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.354 -07 000000462 INF: FPGA: Recv ZSGSRD 30852
17-03-18 05:47:13.364 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:13.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:13.384 -07 000000455 INF: FPGA: Recv ZSGSRD 30839
17-03-18 05:47:13.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:13.394 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:13.394 -07 000000012 INF: FPGA: Recv ZPIEZORD 26692
17-03-18 05:47:13.404 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.1 V.
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30843 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30836 (-137.6 uncal um), Max = 30853 (-137.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 9, negNoise = 8
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: After move to -0.138457, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: Settle wait time = 2443 ms, measure time = 144 ms (allowed 150 ms), total time = 2587 ms
17-03-18 05:47:13.404 -07 000000608 INF: Z Motor: Waiting extra 6 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:13.414 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3321 ms
17-03-18 05:47:13.414 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:13.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:13.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:13.414 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:13.414 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:13.414 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:13.414 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:13.414 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:13.414 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:13.424 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:13.424 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:13.434 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:47:13.434 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:47:13.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:13.484 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:47:13.784 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:47:13.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:47:13.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:13.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1198817608, 0x0, 559484976) start.
17-03-18 05:47:13.814 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:13.814 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:13.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 05:47:13.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1198817608, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:47:13.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:13.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:13.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:47:14.014 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:14.014 -07 000000444 INF: Autofocus start
17-03-18 05:47:14.014 -07 000000444 INF: MeasureProfile start
17-03-18 05:47:14.014 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:14.024 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:14.024 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:14.024 -07 000000444 INF: MeasureProfile done
17-03-18 05:47:14.024 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:47:14.024 -07 000000444 INF: Autofocus finished
17-03-18 05:47:14.224 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:14.224 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:14.224 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.13847175131161. ----------
17-03-18 05:47:14.234 -07 000000610 INF: Cycle	141	Tile	5	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:14.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-18 05:47:14.234 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138472 mm, distance = 6.77 um
17-03-18 05:47:14.234 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-18 05:47:14.234 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:47:14.244 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:14.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:14.244 -07 000000012 INF: FPGA: Recv ZDACR 28770
17-03-18 05:47:14.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.404 -07 000000438 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:47:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:14.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.414 -07 000000444 INF: FPGA: Recv ZSGSRD 29794
17-03-18 05:47:14.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.424 -07 000000438 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:47:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.434 -07 000000444 INF: FPGA: Recv ZSGSRD 29789
17-03-18 05:47:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:47:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.454 -07 000000608 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:47:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.464 -07 000000625 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:47:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.474 -07 000000455 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:47:14.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.484 -07 000000625 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:47:14.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:14.494 -07 000000462 INF: FPGA: Recv ZSGSRD 29795
17-03-18 05:47:14.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:14.504 -07 000000625 INF: FPGA: Recv ZPIEZORD 25287
17-03-18 05:47:14.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:14.514 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V.
17-03-18 05:47:14.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29792 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:47:14.514 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29792, posNoise = 9, negNoise = 3
17-03-18 05:47:14.514 -07 000000610 INF: Z Motor: After move to -0.131701, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:14.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:47:14.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:14.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:14.514 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:14.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:14.514 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:14.514 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:14.514 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:14.514 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:14.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:14.514 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:14.514 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:14.514 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:14.524 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:47:14.524 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:14.524 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:14.524 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:14.534 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:47:14.534 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:14.534 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:14.534 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:14.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28947 150\n [Camera]
17-03-18 05:47:14.654 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.975845,
17-03-18 05:47:14.734 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:15.184 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:15.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:15.184 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:15.184 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:15.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:47:15.184 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:15.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:15.184 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:15.184 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:15.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:47:15.374 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28947 830
17-03-18 05:47:15.524 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:15.564 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:47:15.564 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:47:15.564 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:15.564 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:47:15.564 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:47:15.564 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:15.574 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:15.574 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:47:15.574 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:15.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:47:15.744 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:15.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:15.744 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:15.744 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:15.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:47:15.744 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:15.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:15.744 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:15.744 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:15.744 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:47:15.934 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:47:15.934 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:15.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28947 150' command took 2 ms to send, 1387 ms to get response, and 1398 ms overall
17-03-18 05:47:15.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:15.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131713480138477. ------
17-03-18 05:47:15.944 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:15.944 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13806 mm
17-03-18 05:47:15.944 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:16.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:47:16.124 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:47:16.124 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:16.124 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:47:16.124 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:47:16.124 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:16.124 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:16.134 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:47:16.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:47:16.134 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:47:16.144 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:47:16.144 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:47:16.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:16.144 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:16.144 -07 000000462 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:47:16.144 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 196 ms to get response, and 201 ms overall
17-03-18 05:47:16.144 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30159, sync = True, waitForSettling = False)
17-03-18 05:47:16.144 -07 000000462 INF: Z Motor: Moving to -0.138059 mm, started at -0.131713 mm, distance = -6.35 um
17-03-18 05:47:16.154 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:16.154 -07 000000608 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:16.154 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:16.154 -07 000000608 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:47:16.154 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:16.164 -07 000000462 INF: FPGA: Xmit ZDACW 30159\n [Z Motor]
17-03-18 05:47:16.174 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:17.064 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:47:17.064 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:17.064 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:47:17.064 -07 000000462 INF: FPGA: 'ZDACW 30159' command took 0 ms to send, 890 ms to get response, and 913 ms overall
17-03-18 05:47:17.064 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 901 ms to get response, and 914 ms overall
17-03-18 05:47:17.064 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:17.064 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 881 ms to get response, and 910 ms overall
17-03-18 05:47:17.064 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:17.064 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:17.064 -07 000000444 INF: FPGA: Recv ZDACR 30159
17-03-18 05:47:17.074 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:17.074 -07 000000462 INF: Z Motor: MoveAbsStepped took 922 ms (did NOT wait for settling yet))
17-03-18 05:47:17.114 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:17.114 -07 000000479 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:47:17.124 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:17.124 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:17.124 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:47:17.124 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 911 ms, distance = 0.840 mm, average velocity = 0.922 mm/sec
17-03-18 05:47:18.074 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:18.074 -07 000000444 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:47:18.084 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:18.084 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:18.104 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:18.114 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:18.114 -07 000000608 INF: Y Motor: Moved to 64.0557 after 1968 ms (table move)
17-03-18 05:47:18.114 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138059 mm (DAC = 30159)
17-03-18 05:47:18.114 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.114 -07 000000444 INF: FPGA: Recv ZSGSRD 30780
17-03-18 05:47:18.124 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:18.124 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.124 -07 000000461 INF: FPGA: Recv ZSGSRD 30777
17-03-18 05:47:18.134 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.134 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.134 -07 000000626 INF: FPGA: Recv ZSGSRD 30780
17-03-18 05:47:18.144 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.144 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.144 -07 000000591 INF: FPGA: Recv ZSGSRD 30781
17-03-18 05:47:18.154 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.154 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.154 -07 000000608 INF: FPGA: Recv ZSGSRD 30781
17-03-18 05:47:18.164 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.164 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.164 -07 000000462 INF: FPGA: Recv ZSGSRD 30782
17-03-18 05:47:18.174 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.174 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.174 -07 000000608 INF: FPGA: Recv ZSGSRD 30779
17-03-18 05:47:18.184 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.184 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.184 -07 000000591 INF: FPGA: Recv ZSGSRD 30781
17-03-18 05:47:18.194 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.194 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.194 -07 000000608 INF: FPGA: Recv ZSGSRD 30774
17-03-18 05:47:18.204 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.204 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:18.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30784
17-03-18 05:47:18.214 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.214 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:18.214 -07 000000444 INF: FPGA: Recv ZPIEZORD 26595
17-03-18 05:47:18.224 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V.
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30780 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30784 (-137.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30780, posNoise = 4, negNoise = 6
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: After move to -0.138059, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: Settle wait time = 1965 ms, measure time = 108 ms (allowed 150 ms), total time = 2073 ms
17-03-18 05:47:18.224 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:18.274 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2324 ms
17-03-18 05:47:18.274 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:18.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:18.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:18.274 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:18.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:18.274 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:18.274 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:18.274 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:18.274 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:18.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:18.284 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:18.294 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:47:18.294 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:47:18.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:18.344 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:18.644 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:18.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:18.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:18.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 05:47:18.684 -07 000000608 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:47:18.684 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:18.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:47:18.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:47:18.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:18.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:18.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:47:18.784 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:18.784 -07 000000608 INF: Autofocus start
17-03-18 05:47:18.784 -07 000000608 INF: MeasureProfile start
17-03-18 05:47:18.784 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:18.794 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:18.794 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:18.794 -07 000000608 INF: MeasureProfile done
17-03-18 05:47:18.794 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:47:18.794 -07 000000608 INF: Autofocus finished
17-03-18 05:47:18.994 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:18.994 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:18.994 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.138060601734537. ----------
17-03-18 05:47:18.994 -07 000000610 INF: Cycle	141	Tile	6	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:19.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28683, sync = True, waitForSettling = True)
17-03-18 05:47:19.004 -07 000000610 INF: Z Motor: Moving to -0.131302 mm, started at -0.138061 mm, distance = 6.76 um
17-03-18 05:47:19.004 -07 000000610 INF: FPGA: Xmit ZDACW 28683\n [Z Motor]
17-03-18 05:47:19.004 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:47:19.014 -07 000000610 INF: FPGA: 'ZDACW 28683' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:19.014 -07 000000608 INF: FPGA: Recv ZDACR 28683
17-03-18 05:47:19.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:47:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.184 -07 000000424 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:47:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.194 -07 000000591 INF: FPGA: Recv ZSGSRD 29724
17-03-18 05:47:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.204 -07 000000591 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:47:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29731
17-03-18 05:47:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.224 -07 000000591 INF: FPGA: Recv ZSGSRD 29731
17-03-18 05:47:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29719
17-03-18 05:47:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.244 -07 000000591 INF: FPGA: Recv ZSGSRD 29727
17-03-18 05:47:19.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:47:19.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:19.264 -07 000000608 INF: FPGA: Recv ZSGSRD 29726
17-03-18 05:47:19.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:19.274 -07 000000608 INF: FPGA: Recv ZPIEZORD 25195
17-03-18 05:47:19.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:19.284 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-18 05:47:19.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29729 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29731 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29719 (-130.5 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:47:19.284 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29729, posNoise = 4, negNoise = 10
17-03-18 05:47:19.284 -07 000000610 INF: Z Motor: After move to -0.131302, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:19.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:47:19.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:19.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:19.284 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:19.284 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:19.284 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:19.284 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:19.284 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:19.284 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:19.284 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:19.284 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:47:19.284 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:19.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:19.294 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:19.294 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:19.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:47:19.294 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:19.304 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:47:19.304 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:47:19.304 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:19.304 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:47:19.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28859 150\n [Camera]
17-03-18 05:47:19.514 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:19.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:19.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:19.954 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:19.954 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:19.954 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:47:19.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:19.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:19.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:19.954 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:19.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:47:20.014 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.990831,
17-03-18 05:47:20.144 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28859 830
17-03-18 05:47:20.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:20.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:47:20.344 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:47:20.344 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:20.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:47:20.344 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:47:20.344 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:20.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:20.354 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:20.354 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:20.354 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:47:20.514 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:20.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:20.514 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:20.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:20.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:20.644 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:20.644 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:20.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:47:20.654 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:20.654 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:47:20.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:47:20.704 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:20.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28859 150' command took 2 ms to send, 1384 ms to get response, and 1393 ms overall
17-03-18 05:47:20.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:20.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.131308754773546. ------
17-03-18 05:47:20.704 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:20.704 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13774 mm
17-03-18 05:47:20.704 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:21.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:47:21.054 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:47:21.054 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:21.054 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:47:21.054 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:47:21.054 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:21.054 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:21.064 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:21.064 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-18 05:47:21.064 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 05:47:21.074 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:47:21.074 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:47:21.074 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:21.074 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:21.074 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 368 ms to get response, and 369 ms overall
17-03-18 05:47:21.084 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:21.084 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30089, sync = True, waitForSettling = False)
17-03-18 05:47:21.084 -07 000000424 INF: Z Motor: Moving to -0.137739 mm, started at -0.131309 mm, distance = -6.43 um
17-03-18 05:47:21.094 -07 000000424 INF: FPGA: Xmit ZDACW 30089\n [Z Motor]
17-03-18 05:47:21.814 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:47:21.814 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:47:21.814 -07 000000611 INF: FPGA: 'YRDPOS' command took 2 ms to send, 730 ms to get response, and 735 ms overall
17-03-18 05:47:21.814 -07 000000424 INF: FPGA: 'ZDACW 30089' command took 0 ms to send, 710 ms to get response, and 730 ms overall
17-03-18 05:47:21.814 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:21.814 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:21.814 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 721 ms to get response, and 730 ms overall
17-03-18 05:47:21.814 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:21.814 -07 000000611 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:21.814 -07 000000501 INF: FPGA: Recv ZDACR 30089
17-03-18 05:47:21.814 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:21.814 -07 000000611 INF: Y Motor: Moving 1338 steps-14
17-03-18 05:47:21.824 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:21.824 -07 000000424 INF: Z Motor: MoveAbsStepped took 739 ms (did NOT wait for settling yet))
17-03-18 05:47:21.824 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:22.194 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:47:22.194 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:47:22.244 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:22.254 -07 000000424 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:47:22.264 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:22.264 -07 000000611 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:22.264 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:47:22.264 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.837 mm, average velocity = 2.185 mm/sec
17-03-18 05:47:23.214 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:23.214 -07 000000561 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:47:23.224 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:23.224 -07 000000611 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:23.254 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:23.254 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:47:23.254 -07 000000611 INF: Y Motor: Moved to 64.8779 after 2177 ms (table move)
17-03-18 05:47:23.254 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137739 mm (DAC = 30089)
17-03-18 05:47:23.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.264 -07 000000561 INF: FPGA: Recv ZSGSRD 30732
17-03-18 05:47:23.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:47:23.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30740
17-03-18 05:47:23.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.274 -07 000000606 INF: FPGA: Recv ZSGSRD 30727
17-03-18 05:47:23.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.284 -07 000000382 INF: FPGA: Recv ZSGSRD 30726
17-03-18 05:47:23.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.294 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.294 -07 000000611 INF: FPGA: Recv ZSGSRD 30730
17-03-18 05:47:23.304 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.304 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30736
17-03-18 05:47:23.314 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.314 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.314 -07 000000561 INF: FPGA: Recv ZSGSRD 30725
17-03-18 05:47:23.324 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.324 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:47:23.334 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.334 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.334 -07 000000611 INF: FPGA: Recv ZSGSRD 30730
17-03-18 05:47:23.344 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.344 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:23.344 -07 000000606 INF: FPGA: Recv ZSGSRD 30728
17-03-18 05:47:23.354 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.354 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:23.354 -07 000000611 INF: FPGA: Recv ZPIEZORD 26557
17-03-18 05:47:23.364 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.2 V.
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30730 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30730 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30725 (-136.9 uncal um), Max = 30740 (-137.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30730, posNoise = 10, negNoise = 5
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: After move to -0.137739, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: Settle wait time = 2176 ms, measure time = 103 ms (allowed 150 ms), total time = 2279 ms
17-03-18 05:47:23.364 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:23.414 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2700 ms
17-03-18 05:47:23.414 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:23.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:23.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:23.424 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:23.424 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:23.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:23.424 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:23.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:47:23.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:23.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:23.424 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:23.434 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:47:23.434 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:47:23.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:23.474 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:23.784 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:23.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:23.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:23.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:47:23.814 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:23.814 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:23.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:47:23.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:47:23.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:23.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:23.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:47:23.914 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:23.914 -07 000000608 INF: Autofocus start
17-03-18 05:47:23.914 -07 000000608 INF: MeasureProfile start
17-03-18 05:47:23.914 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:23.924 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:23.924 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:23.924 -07 000000608 INF: MeasureProfile done
17-03-18 05:47:23.924 -07 000000608 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:47:23.924 -07 000000608 INF: Autofocus finished
17-03-18 05:47:24.124 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:24.124 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:47:24.124 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137739391127449. ----------
17-03-18 05:47:24.134 -07 000000610 INF: Cycle	141	Tile	7	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:24.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28630, sync = True, waitForSettling = True)
17-03-18 05:47:24.134 -07 000000610 INF: Z Motor: Moving to -0.131060 mm, started at -0.137739 mm, distance = 6.68 um
17-03-18 05:47:24.134 -07 000000610 INF: FPGA: Xmit ZDACW 28630\n [Z Motor]
17-03-18 05:47:24.134 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:47:24.144 -07 000000610 INF: FPGA: 'ZDACW 28630' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:24.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:24.144 -07 000000611 INF: FPGA: Recv ZDACR 28630
17-03-18 05:47:24.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:24.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.304 -07 000000382 INF: FPGA: Recv ZSGSRD 29698
17-03-18 05:47:24.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:24.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.314 -07 000000012 INF: FPGA: Recv ZSGSRD 29691
17-03-18 05:47:24.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29692
17-03-18 05:47:24.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.334 -07 000000625 INF: FPGA: Recv ZSGSRD 29693
17-03-18 05:47:24.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.344 -07 000000611 INF: FPGA: Recv ZSGSRD 29697
17-03-18 05:47:24.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.354 -07 000000625 INF: FPGA: Recv ZSGSRD 29693
17-03-18 05:47:24.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29689
17-03-18 05:47:24.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.374 -07 000000382 INF: FPGA: Recv ZSGSRD 29688
17-03-18 05:47:24.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.384 -07 000000501 INF: FPGA: Recv ZSGSRD 29694
17-03-18 05:47:24.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:24.394 -07 000000608 INF: FPGA: Recv ZSGSRD 29690
17-03-18 05:47:24.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:24.404 -07 000000561 INF: FPGA: Recv ZPIEZORD 25148
17-03-18 05:47:24.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:24.414 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -10.0 V.
17-03-18 05:47:24.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29692 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29692 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29688 (-130.3 uncal um), Max = 29698 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:24.414 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29692, posNoise = 6, negNoise = 4
17-03-18 05:47:24.414 -07 000000610 INF: Z Motor: After move to -0.131060, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:24.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:47:24.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:24.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:24.414 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:24.414 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:24.414 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:24.414 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:24.414 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:24.414 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:24.414 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:24.414 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:24.414 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:24.414 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:24.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:47:24.424 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:24.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:24.424 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:24.434 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:47:24.434 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:47:24.434 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:47:24.434 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:47:24.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28806 150\n [Camera]
17-03-18 05:47:24.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:25.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 638
17-03-18 05:47:25.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 638
17-03-18 05:47:25.084 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:25.084 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 638
17-03-18 05:47:25.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 638
17-03-18 05:47:25.094 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:25.094 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 05:47:25.094 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:25.094 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:25.094 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-18 05:47:25.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28806 830
17-03-18 05:47:25.374 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.016692,
17-03-18 05:47:25.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:25.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:47:25.484 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:47:25.484 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:25.494 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:47:25.494 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:47:25.494 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:25.494 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:25.494 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:47:25.494 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:25.504 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:47:25.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:25.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:25.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:25.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:25.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:25.644 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:25.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:25.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:47:25.764 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:25.764 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:47:25.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:47:25.834 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:25.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28806 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:47:25.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:25.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.131071058924301. ------
17-03-18 05:47:25.834 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:25.834 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13775 mm
17-03-18 05:47:25.834 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:26.154 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:47:26.154 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:47:26.154 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:26.154 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:26.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:47:26.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:47:26.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:26.164 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:26.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 05:47:26.164 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-18 05:47:26.174 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:26.174 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 334 ms overall
17-03-18 05:47:26.174 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:47:26.174 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:47:26.174 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:26.174 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30091, sync = True, waitForSettling = False)
17-03-18 05:47:26.174 -07 000000382 INF: Z Motor: Moving to -0.137748 mm, started at -0.131071 mm, distance = -6.68 um
17-03-18 05:47:26.184 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:26.194 -07 000000382 INF: FPGA: Xmit ZDACW 30091\n [Z Motor]
17-03-18 05:47:27.064 -07 000000455 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:47:27.064 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:47:27.064 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:27.064 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:27.064 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 870 ms to get response, and 885 ms overall
17-03-18 05:47:27.064 -07 000000382 INF: FPGA: 'ZDACW 30091' command took 0 ms to send, 860 ms to get response, and 883 ms overall
17-03-18 05:47:27.064 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:27.064 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:27.064 -07 000000606 INF: FPGA: 'YRDPOS' command took 2 ms to send, 880 ms to get response, and 887 ms overall
17-03-18 05:47:27.064 -07 000000606 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:27.064 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:27.064 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:47:27.064 -07 000000608 INF: FPGA: Recv ZDACR 30091
17-03-18 05:47:27.074 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:27.074 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:27.074 -07 000000382 INF: Z Motor: MoveAbsStepped took 893 ms (did NOT wait for settling yet))
17-03-18 05:47:27.444 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:47:27.444 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:47:27.504 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:27.504 -07 000000608 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:47:27.514 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:27.514 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:27.514 -07 000000606 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:47:27.514 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.188 mm/sec
17-03-18 05:47:28.464 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:28.464 -07 000000455 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:47:28.474 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:28.474 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:28.504 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:28.514 -07 000000606 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:28.514 -07 000000606 INF: Y Motor: Moved to 65.7129 after 2336 ms (table move)
17-03-18 05:47:28.514 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137748 mm (DAC = 30091)
17-03-18 05:47:28.514 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.514 -07 000000608 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:47:28.524 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:28.524 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.524 -07 000000444 INF: FPGA: Recv ZSGSRD 30724
17-03-18 05:47:28.534 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.534 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30731
17-03-18 05:47:28.544 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.544 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.544 -07 000000487 INF: FPGA: Recv ZSGSRD 30726
17-03-18 05:47:28.554 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.554 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.554 -07 000000606 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:47:28.564 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.564 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.564 -07 000000382 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:47:28.574 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.574 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:47:28.584 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.584 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.584 -07 000000382 INF: FPGA: Recv ZSGSRD 30737
17-03-18 05:47:28.594 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.594 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.594 -07 000000438 INF: FPGA: Recv ZSGSRD 30731
17-03-18 05:47:28.604 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.604 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:28.604 -07 000000382 INF: FPGA: Recv ZSGSRD 30733
17-03-18 05:47:28.614 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.614 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:28.614 -07 000000444 INF: FPGA: Recv ZPIEZORD 26501
17-03-18 05:47:28.624 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.3 V.
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30732 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30734 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30724 (-136.9 uncal um), Max = 30738 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30732, posNoise = 6, negNoise = 8
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: After move to -0.137748, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: Settle wait time = 2336 ms, measure time = 108 ms (allowed 150 ms), total time = 2444 ms
17-03-18 05:47:28.624 -07 000000611 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:28.674 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2831 ms
17-03-18 05:47:28.674 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:28.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:28.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:28.674 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:28.674 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:28.674 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:28.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:28.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:28.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:28.684 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:28.684 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:28.694 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:47:28.694 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:47:28.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:28.744 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:29.044 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:29.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:29.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:29.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:47:29.084 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:29.084 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:29.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 05:47:29.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:47:29.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:29.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:29.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:47:29.184 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:29.184 -07 000000608 INF: Autofocus start
17-03-18 05:47:29.184 -07 000000608 INF: MeasureProfile start
17-03-18 05:47:29.184 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:29.194 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:29.194 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:29.194 -07 000000608 INF: MeasureProfile done
17-03-18 05:47:29.194 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:47:29.194 -07 000000608 INF: Autofocus finished
17-03-18 05:47:29.394 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:29.394 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:29.394 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137752239551733. ----------
17-03-18 05:47:29.394 -07 000000610 INF: Cycle	141	Tile	8	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:29.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28586, sync = True, waitForSettling = True)
17-03-18 05:47:29.404 -07 000000610 INF: Z Motor: Moving to -0.130858 mm, started at -0.137752 mm, distance = 6.89 um
17-03-18 05:47:29.404 -07 000000610 INF: FPGA: Xmit ZDACW 28586\n [Z Motor]
17-03-18 05:47:29.404 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:47:29.414 -07 000000610 INF: FPGA: 'ZDACW 28586' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:29.414 -07 000000455 INF: FPGA: Recv ZDACR 28586
17-03-18 05:47:29.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:29.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.574 -07 000000444 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:47:29.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:29.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:47:29.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:29.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.594 -07 000000608 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:47:29.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.604 -07 000000606 INF: FPGA: Recv ZSGSRD 29658
17-03-18 05:47:29.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29662
17-03-18 05:47:29.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29659
17-03-18 05:47:29.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.634 -07 000000444 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:47:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.644 -07 000000438 INF: FPGA: Recv ZSGSRD 29666
17-03-18 05:47:29.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.654 -07 000000608 INF: FPGA: Recv ZSGSRD 29655
17-03-18 05:47:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:29.664 -07 000000606 INF: FPGA: Recv ZSGSRD 29656
17-03-18 05:47:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:29.674 -07 000000382 INF: FPGA: Recv ZPIEZORD 25092
17-03-18 05:47:29.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:29.684 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.0 V.
17-03-18 05:47:29.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29655 (-130.1 uncal um), Max = 29666 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:47:29.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 6, negNoise = 5
17-03-18 05:47:29.684 -07 000000610 INF: Z Motor: After move to -0.130858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:29.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:47:29.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:29.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:29.684 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:29.684 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:29.684 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:29.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:29.684 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:29.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:29.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:29.684 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:29.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:29.684 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:29.684 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:29.684 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:29.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:29.694 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:29.704 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:47:29.704 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:47:29.704 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:47:29.704 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:47:29.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28763 150\n [Camera]
17-03-18 05:47:29.904 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:30.354 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:30.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:30.354 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:30.354 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:30.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:30.354 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:30.354 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:30.354 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) start.
17-03-18 05:47:30.364 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:30.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2340614472, 0x0, 418435064) start.
17-03-18 05:47:30.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28763 830
17-03-18 05:47:30.694 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:30.734 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.041198,
17-03-18 05:47:30.744 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2340614472, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:47:30.744 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:47:30.744 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:30.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:30.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:47:30.754 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:47:30.754 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:30.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:30.754 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:47:30.754 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:47:30.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:30.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:30.914 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:30.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:30.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:30.914 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:30.914 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:30.914 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:47:31.024 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:31.024 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:47:31.104 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:31.104 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:31.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28763 150' command took 2 ms to send, 1382 ms to get response, and 1393 ms overall
17-03-18 05:47:31.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:31.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130865484135765. ------
17-03-18 05:47:31.104 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:31.104 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13717 mm
17-03-18 05:47:31.104 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:31.304 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:47:31.304 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:47:31.304 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:31.314 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:31.314 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:47:31.324 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:47:31.324 -07 000000487 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:47:31.334 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:31.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:47:31.414 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:47:31.414 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:31.424 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:47:31.424 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 05:47:31.434 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:31.434 -07 000000455 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:47:31.434 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 322 ms to get response, and 325 ms overall
17-03-18 05:47:31.434 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 92 ms to get response, and 102 ms overall
17-03-18 05:47:31.434 -07 000000487 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:31.434 -07 000000487 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:31.434 -07 000000487 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:47:31.434 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29964, sync = True, waitForSettling = False)
17-03-18 05:47:31.434 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:31.434 -07 000000455 INF: Z Motor: Moving to -0.137166 mm, started at -0.130865 mm, distance = -6.30 um
17-03-18 05:47:31.444 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:31.454 -07 000000455 INF: FPGA: Xmit ZDACW 29964\n [Z Motor]
17-03-18 05:47:32.314 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:47:32.314 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:32.314 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:32.314 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 870 ms to get response, and 877 ms overall
17-03-18 05:47:32.314 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:47:32.314 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 860 ms to get response, and 877 ms overall
17-03-18 05:47:32.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:32.314 -07 000000455 INF: FPGA: 'ZDACW 29964' command took 0 ms to send, 850 ms to get response, and 876 ms overall
17-03-18 05:47:32.314 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:32.314 -07 000000608 INF: FPGA: Recv ZDACR 29964
17-03-18 05:47:32.324 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:32.324 -07 000000455 INF: Z Motor: MoveAbsStepped took 886 ms (did NOT wait for settling yet))
17-03-18 05:47:32.374 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:32.374 -07 000000479 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:47:32.384 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:47:32.384 -07 000000487 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:32.384 -07 000000487 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:47:32.384 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 877 ms, distance = 0.840 mm, average velocity = 0.957 mm/sec
17-03-18 05:47:33.334 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:33.334 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:47:33.344 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:33.344 -07 000000487 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:33.374 -07 000000487 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:33.374 -07 000000487 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:33.374 -07 000000487 INF: Y Motor: Moved to 66.5381 after 2046 ms (table move)
17-03-18 05:47:33.374 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137166 mm (DAC = 29964)
17-03-18 05:47:33.374 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30642
17-03-18 05:47:33.384 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 05:47:33.384 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.384 -07 000000626 INF: FPGA: Recv ZSGSRD 30642
17-03-18 05:47:33.394 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:47:33.394 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.394 -07 000000487 INF: FPGA: Recv ZSGSRD 30639
17-03-18 05:47:33.404 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.404 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.404 -07 000000487 INF: FPGA: Recv ZSGSRD 30637
17-03-18 05:47:33.414 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.414 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.414 -07 000000455 INF: FPGA: Recv ZSGSRD 30635
17-03-18 05:47:33.424 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.424 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.424 -07 000000487 INF: FPGA: Recv ZSGSRD 30643
17-03-18 05:47:33.434 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.434 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.434 -07 000000455 INF: FPGA: Recv ZSGSRD 30647
17-03-18 05:47:33.444 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.444 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.444 -07 000000626 INF: FPGA: Recv ZSGSRD 30641
17-03-18 05:47:33.454 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.454 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.454 -07 000000479 INF: FPGA: Recv ZSGSRD 30638
17-03-18 05:47:33.464 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.464 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:33.464 -07 000000608 INF: FPGA: Recv ZSGSRD 30645
17-03-18 05:47:33.474 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.474 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:33.474 -07 000000479 INF: FPGA: Recv ZPIEZORD 26435
17-03-18 05:47:33.484 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.3 V.
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30642 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30647 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 6, negNoise = 6
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: After move to -0.137166, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: Settle wait time = 1945 ms, measure time = 101 ms (allowed 150 ms), total time = 2046 ms
17-03-18 05:47:33.484 -07 000000444 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:33.534 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2422 ms
17-03-18 05:47:33.534 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:33.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:33.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:33.534 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:33.534 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:33.534 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:33.534 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:33.544 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:33.544 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:33.544 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:33.544 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:33.554 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:47:33.554 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:47:33.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:33.604 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:33.904 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:33.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:33.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:33.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:33.944 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:33.944 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:33.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 05:47:34.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:47:34.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:34.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:34.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:47:34.044 -07 000000487 INF: Autofocus start
17-03-18 05:47:34.044 -07 000000487 INF: MeasureProfile start
17-03-18 05:47:34.044 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:34.044 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:34.054 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:34.054 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:34.054 -07 000000487 INF: MeasureProfile done
17-03-18 05:47:34.054 -07 000000487 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:47:34.054 -07 000000487 INF: Autofocus finished
17-03-18 05:47:34.254 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:34.254 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:34.254 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.137167636246832. ----------
17-03-18 05:47:34.254 -07 000000610 INF: Cycle	141	Tile	9	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:34.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28488, sync = True, waitForSettling = True)
17-03-18 05:47:34.264 -07 000000610 INF: Z Motor: Moving to -0.130410 mm, started at -0.137168 mm, distance = 6.76 um
17-03-18 05:47:34.264 -07 000000610 INF: FPGA: Xmit ZDACW 28488\n [Z Motor]
17-03-18 05:47:34.264 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:47:34.274 -07 000000610 INF: FPGA: 'ZDACW 28488' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:34.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:34.274 -07 000000608 INF: FPGA: Recv ZDACR 28488
17-03-18 05:47:34.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.434 -07 000000444 INF: FPGA: Recv ZSGSRD 29589
17-03-18 05:47:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.444 -07 000000626 INF: FPGA: Recv ZSGSRD 29590
17-03-18 05:47:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29589
17-03-18 05:47:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.464 -07 000000455 INF: FPGA: Recv ZSGSRD 29590
17-03-18 05:47:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.474 -07 000000462 INF: FPGA: Recv ZSGSRD 29584
17-03-18 05:47:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29585
17-03-18 05:47:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.504 -07 000000487 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:47:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.514 -07 000000444 INF: FPGA: Recv ZSGSRD 29588
17-03-18 05:47:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.524 -07 000000462 INF: FPGA: Recv ZSGSRD 29587
17-03-18 05:47:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:34.534 -07 000000608 INF: FPGA: Recv ZSGSRD 29597
17-03-18 05:47:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:34.544 -07 000000462 INF: FPGA: Recv ZPIEZORD 25072
17-03-18 05:47:34.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:34.554 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.9 V.
17-03-18 05:47:34.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29589 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29589 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29584 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:47:34.554 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29589, posNoise = 8, negNoise = 5
17-03-18 05:47:34.554 -07 000000610 INF: Z Motor: After move to -0.130410, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:34.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:47:34.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:34.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:34.554 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:34.554 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:34.554 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:34.554 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:34.554 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:34.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:34.554 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:34.554 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:34.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:34.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:34.564 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:34.564 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:34.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:34.564 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:34.574 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:47:34.574 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:47:34.574 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:47:34.574 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:47:34.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28665 150\n [Camera]
17-03-18 05:47:34.784 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:35.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:35.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:35.224 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:35.224 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:35.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:35.224 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:35.234 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:35.234 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:47:35.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:35.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:47:35.414 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28665 830
17-03-18 05:47:35.564 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:35.624 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:47:35.624 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:35.624 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:35.634 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:47:35.634 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:47:35.634 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:35.634 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:35.634 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:47:35.634 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:35.644 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:47:35.784 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:35.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:35.784 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:35.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:35.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:35.784 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:35.784 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:35.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:47:35.794 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:35.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:47:35.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:47:35.974 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:35.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28665 150' command took 2 ms to send, 1384 ms to get response, and 1395 ms overall
17-03-18 05:47:35.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:35.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.1304093650737. ------
17-03-18 05:47:35.984 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13718 mm
17-03-18 05:47:35.984 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:35.984 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:35.984 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:47:35.984 -07 000000444 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 05:47:35.984 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29967, sync = True, waitForSettling = False)
17-03-18 05:47:35.984 -07 000000608 INF: Z Motor: Moving to -0.137180 mm, started at -0.130409 mm, distance = -6.77 um
17-03-18 05:47:35.984 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:35.994 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:35.994 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:35.994 -07 000000487 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:47:36.004 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:47:36.004 -07 000000608 INF: FPGA: Xmit ZDACW 29967\n [Z Motor]
17-03-18 05:47:36.004 -07 000000444 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:36.004 -07 000000444 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:36.004 -07 000000444 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:47:36.004 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:47:36.014 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:36.014 -07 000000608 INF: FPGA: 'ZDACW 29967' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:47:36.024 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:36.034 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:36.034 -07 000000455 INF: FPGA: Recv ZDACR 29967
17-03-18 05:47:36.044 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:36.044 -07 000000608 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:47:36.094 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.019446,
17-03-18 05:47:36.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:47:36.184 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:47:36.184 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:36.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:47:36.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:36.184 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:36.184 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:36.194 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:36.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:47:36.194 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:47:36.214 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:36.214 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:47:36.394 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:47:36.394 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:47:36.454 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:36.454 -07 000000462 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:47:36.464 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:36.464 -07 000000444 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:36.464 -07 000000444 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:47:36.464 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 05:47:36.794 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:36.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:37.414 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:37.414 -07 000000479 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:47:37.424 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:37.424 -07 000000444 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:37.454 -07 000000444 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:37.454 -07 000000444 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:37.454 -07 000000444 INF: Y Motor: Moved to 67.3706 after 1469 ms (table move)
17-03-18 05:47:37.454 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137180 mm (DAC = 29967)
17-03-18 05:47:37.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.454 -07 000000462 INF: FPGA: Recv ZSGSRD 30651
17-03-18 05:47:37.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:37.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.464 -07 000000479 INF: FPGA: Recv ZSGSRD 30642
17-03-18 05:47:37.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.474 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.474 -07 000000444 INF: FPGA: Recv ZSGSRD 30644
17-03-18 05:47:37.484 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.484 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.484 -07 000000424 INF: FPGA: Recv ZSGSRD 30643
17-03-18 05:47:37.494 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.494 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.494 -07 000000626 INF: FPGA: Recv ZSGSRD 30638
17-03-18 05:47:37.504 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.504 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.504 -07 000000479 INF: FPGA: Recv ZSGSRD 30647
17-03-18 05:47:37.514 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.514 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.514 -07 000000626 INF: FPGA: Recv ZSGSRD 30648
17-03-18 05:47:37.524 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.524 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.524 -07 000000424 INF: FPGA: Recv ZSGSRD 30649
17-03-18 05:47:37.534 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.534 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.534 -07 000000626 INF: FPGA: Recv ZSGSRD 30646
17-03-18 05:47:37.544 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.544 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:37.544 -07 000000424 INF: FPGA: Recv ZSGSRD 30646
17-03-18 05:47:37.554 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:37.554 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:37.554 -07 000000479 INF: FPGA: Recv ZPIEZORD 26481
17-03-18 05:47:37.564 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.2 V.
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30645 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30646 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30638 (-136.4 uncal um), Max = 30651 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30645, posNoise = 6, negNoise = 7
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: After move to -0.137180, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:47:37.564 -07 000000625 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:37.614 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 05:47:37.614 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:37.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:37.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:37.614 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:37.614 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:37.614 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:37.614 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:37.614 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:37.614 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:37.624 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:37.624 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:37.634 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:47:37.634 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:47:37.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:37.684 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:37.984 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:37.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:37.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:37.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-18 05:47:38.024 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:38.024 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:38.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:47:38.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:47:38.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:38.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:38.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:47:38.124 -07 000000444 INF: Autofocus start
17-03-18 05:47:38.124 -07 000000444 INF: MeasureProfile start
17-03-18 05:47:38.124 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:38.124 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:38.134 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:38.134 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:38.134 -07 000000444 INF: MeasureProfile done
17-03-18 05:47:38.134 -07 000000444 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 05:47:38.134 -07 000000444 INF: Autofocus finished
17-03-18 05:47:38.334 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:38.334 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:38.334 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.1371933330954. ----------
17-03-18 05:47:38.334 -07 000000610 INF: Cycle	141	Tile	10	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:38.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28394, sync = True, waitForSettling = True)
17-03-18 05:47:38.344 -07 000000610 INF: Z Motor: Moving to -0.129979 mm, started at -0.137193 mm, distance = 7.21 um
17-03-18 05:47:38.344 -07 000000610 INF: FPGA: Xmit ZDACW 28394\n [Z Motor]
17-03-18 05:47:38.344 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:47:38.354 -07 000000610 INF: FPGA: 'ZDACW 28394' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:38.354 -07 000000444 INF: FPGA: Recv ZDACR 28394
17-03-18 05:47:38.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:38.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:47:38.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.524 -07 000000626 INF: FPGA: Recv ZSGSRD 29521
17-03-18 05:47:38.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.534 -07 000000625 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:47:38.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.544 -07 000000479 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:47:38.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.554 -07 000000625 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:47:38.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.564 -07 000000479 INF: FPGA: Recv ZSGSRD 29523
17-03-18 05:47:38.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:47:38.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.584 -07 000000479 INF: FPGA: Recv ZSGSRD 29520
17-03-18 05:47:38.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29521
17-03-18 05:47:38.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:38.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:47:38.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:38.614 -07 000000462 INF: FPGA: Recv ZPIEZORD 24988
17-03-18 05:47:38.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:38.624 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.9 V.
17-03-18 05:47:38.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29522 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29522 (-129.2 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29520 (-129.2 uncal um), Max = 29524 (-129.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:47:38.624 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29522, posNoise = 2, negNoise = 2
17-03-18 05:47:38.624 -07 000000610 INF: Z Motor: After move to -0.129979, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:38.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:47:38.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:38.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:38.624 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:38.624 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:38.624 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:38.624 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:38.624 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:38.624 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:38.624 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:38.624 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:38.624 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:38.624 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:38.624 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:38.624 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:38.634 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:47:38.634 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:38.644 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 05:47:38.644 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:38.644 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:38.644 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:38.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28570 150\n [Camera]
17-03-18 05:47:38.854 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:39.294 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:39.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:39.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:39.294 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:39.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:47:39.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:39.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:39.294 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:39.294 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:39.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:47:39.484 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28570 831
17-03-18 05:47:39.634 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:39.694 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:47:39.694 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:47:39.694 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:39.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:47:39.694 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:47:39.694 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:39.694 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:39.704 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:47:39.704 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:39.704 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:47:39.854 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:39.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:39.854 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:39.854 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:39.854 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:47:39.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:39.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:39.854 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:39.854 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:39.854 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:47:40.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:40.044 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:40.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28570 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-18 05:47:40.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:40.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.129978942860202. ------
17-03-18 05:47:40.044 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:40.044 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13637 mm
17-03-18 05:47:40.044 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:40.054 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:40.054 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:47:40.054 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29789, sync = True, waitForSettling = False)
17-03-18 05:47:40.054 -07 000000479 INF: Z Motor: Moving to -0.136365 mm, started at -0.129979 mm, distance = -6.39 um
17-03-18 05:47:40.054 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:40.054 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:47:40.054 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 05:47:40.064 -07 000000479 INF: FPGA: Xmit ZDACW 29789\n [Z Motor]
17-03-18 05:47:40.064 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:47:40.074 -07 000000479 INF: FPGA: 'ZDACW 29789' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:47:40.074 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:40.074 -07 000000462 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:47:40.084 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:47:40.084 -07 000000444 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:40.084 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:40.084 -07 000000606 INF: FPGA: Recv ZDACR 29789
17-03-18 05:47:40.084 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:40.084 -07 000000444 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:47:40.094 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:40.094 -07 000000479 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:47:40.094 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:40.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:47:40.244 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:47:40.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:40.244 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:47:40.244 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:47:40.244 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:40.254 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:40.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:47:40.254 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:47:40.254 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:40.254 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 05:47:40.254 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:47:40.464 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:47:40.464 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 05:47:40.514 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:40.524 -07 000000438 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:47:40.534 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:40.534 -07 000000444 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:40.534 -07 000000444 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:47:40.534 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.842 mm, average velocity = 2.210 mm/sec
17-03-18 05:47:41.454 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.971733,
17-03-18 05:47:41.484 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:41.484 -07 000000382 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:47:41.494 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:41.494 -07 000000444 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:41.534 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:41.534 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:41.534 -07 000000444 INF: Y Motor: Moved to 68.2036 after 1478 ms (table move)
17-03-18 05:47:41.534 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136365 mm (DAC = 29789)
17-03-18 05:47:41.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.544 -07 000000444 INF: FPGA: Recv ZSGSRD 30508
17-03-18 05:47:41.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:47:41.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.544 -07 000000444 INF: FPGA: Recv ZSGSRD 30516
17-03-18 05:47:41.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:41.554 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.554 -07 000000479 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:47:41.564 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.564 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.564 -07 000000479 INF: FPGA: Recv ZSGSRD 30518
17-03-18 05:47:41.574 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.574 -07 000000479 INF: FPGA: Recv ZSGSRD 30517
17-03-18 05:47:41.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.584 -07 000000444 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:47:41.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.594 -07 000000626 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:47:41.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.604 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.604 -07 000000591 INF: FPGA: Recv ZSGSRD 30518
17-03-18 05:47:41.614 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.614 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.614 -07 000000438 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:47:41.624 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:41.624 -07 000000626 INF: FPGA: Recv ZSGSRD 30511
17-03-18 05:47:41.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.634 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:41.634 -07 000000591 INF: FPGA: Recv ZPIEZORD 26366
17-03-18 05:47:41.644 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.1 V.
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30514 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30519 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30514, posNoise = 5, negNoise = 8
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: After move to -0.136365, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:47:41.644 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:41.694 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 05:47:41.694 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:41.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:41.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:41.694 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:41.694 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:41.694 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:41.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:41.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:41.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:41.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:41.704 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:41.704 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:47:41.704 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:47:41.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:41.754 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:41.794 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:41.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:42.054 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:42.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:42.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:42.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:42.094 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:42.094 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:42.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:47:42.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:47:42.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:42.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:42.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:47:42.194 -07 000000438 INF: Autofocus start
17-03-18 05:47:42.194 -07 000000438 INF: MeasureProfile start
17-03-18 05:47:42.194 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:42.194 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:42.204 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:42.204 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:42.204 -07 000000438 INF: MeasureProfile done
17-03-18 05:47:42.204 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:47:42.204 -07 000000438 INF: Autofocus finished
17-03-18 05:47:42.404 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:42.404 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:42.404 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.136351761304829. ----------
17-03-18 05:47:42.404 -07 000000610 INF: Cycle	141	Tile	11	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:42.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28297, sync = True, waitForSettling = True)
17-03-18 05:47:42.414 -07 000000610 INF: Z Motor: Moving to -0.129535 mm, started at -0.136352 mm, distance = 6.82 um
17-03-18 05:47:42.414 -07 000000610 INF: FPGA: Xmit ZDACW 28297\n [Z Motor]
17-03-18 05:47:42.414 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:47:42.424 -07 000000610 INF: FPGA: 'ZDACW 28297' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:42.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:42.424 -07 000000438 INF: FPGA: Recv ZDACR 28297
17-03-18 05:47:42.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29453
17-03-18 05:47:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29455
17-03-18 05:47:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29454
17-03-18 05:47:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.614 -07 000000625 INF: FPGA: Recv ZSGSRD 29455
17-03-18 05:47:42.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.624 -07 000000626 INF: FPGA: Recv ZSGSRD 29459
17-03-18 05:47:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.634 -07 000000438 INF: FPGA: Recv ZSGSRD 29450
17-03-18 05:47:42.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29451
17-03-18 05:47:42.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.654 -07 000000444 INF: FPGA: Recv ZSGSRD 29451
17-03-18 05:47:42.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.664 -07 000000591 INF: FPGA: Recv ZSGSRD 29452
17-03-18 05:47:42.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:42.674 -07 000000438 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:47:42.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:42.684 -07 000000591 INF: FPGA: Recv ZPIEZORD 24954
17-03-18 05:47:42.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:42.694 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.9 V.
17-03-18 05:47:42.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29454 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29454 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29450 (-128.7 uncal um), Max = 29459 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:42.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29454, posNoise = 5, negNoise = 4
17-03-18 05:47:42.694 -07 000000610 INF: Z Motor: After move to -0.129535, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:42.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:47:42.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:42.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:42.694 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:42.694 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:42.694 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:42.694 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:42.694 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:42.694 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:42.694 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:47:42.694 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:42.694 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:42.694 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:42.704 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:42.704 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:42.704 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:47:42.704 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:42.714 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:42.714 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:47:42.714 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:47:42.714 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:42.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28473 150\n [Camera]
17-03-18 05:47:42.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:43.364 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:43.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:43.364 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:43.364 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:43.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:43.364 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:43.374 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:43.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:47:43.374 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:43.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:47:43.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28473 830
17-03-18 05:47:43.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:43.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:47:43.754 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:47:43.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:43.754 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:43.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:47:43.764 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:47:43.764 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:43.764 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:47:43.764 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:43.764 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:47:43.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:43.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:43.924 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:43.924 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:43.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:43.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:43.934 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:43.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:47:43.934 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:43.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:47:44.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:44.114 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:44.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28473 150' command took 2 ms to send, 1384 ms to get response, and 1393 ms overall
17-03-18 05:47:44.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:44.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129542096434562. ------
17-03-18 05:47:44.244 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13617 mm
17-03-18 05:47:44.244 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:44.244 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:44.244 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:44.244 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:47:44.244 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 05:47:44.244 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29747, sync = True, waitForSettling = False)
17-03-18 05:47:44.244 -07 000000455 INF: Z Motor: Moving to -0.136173 mm, started at -0.129542 mm, distance = -6.63 um
17-03-18 05:47:44.254 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:44.254 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:44.254 -07 000000461 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:47:44.264 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:47:44.264 -07 000000444 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:44.264 -07 000000455 INF: FPGA: Xmit ZDACW 29747\n [Z Motor]
17-03-18 05:47:44.264 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:47:44.264 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:44.264 -07 000000444 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:47:44.274 -07 000000455 INF: FPGA: 'ZDACW 29747' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:47:44.274 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:44.284 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:44.294 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:44.294 -07 000000461 INF: FPGA: Recv ZDACR 29747
17-03-18 05:47:44.304 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:44.304 -07 000000455 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:47:44.324 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:47:44.324 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:47:44.324 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:44.324 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:47:44.324 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:47:44.324 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:44.334 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:44.334 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:47:44.334 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:44.344 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:47:44.474 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:44.474 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:47:44.654 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:47:44.654 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:47:44.704 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:44.714 -07 000000625 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:47:44.714 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:44.714 -07 000000444 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:44.714 -07 000000444 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:47:44.714 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 05:47:45.664 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:45.664 -07 000000501 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:47:45.674 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:45.674 -07 000000444 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:45.714 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:45.714 -07 000000444 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:45.714 -07 000000444 INF: Y Motor: Moved to 69.0259 after 1466 ms (table move)
17-03-18 05:47:45.714 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136173 mm (DAC = 29747)
17-03-18 05:47:45.714 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.714 -07 000000501 INF: FPGA: Recv ZSGSRD 30486
17-03-18 05:47:45.724 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:45.724 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.724 -07 000000591 INF: FPGA: Recv ZSGSRD 30483
17-03-18 05:47:45.734 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.734 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.734 -07 000000591 INF: FPGA: Recv ZSGSRD 30479
17-03-18 05:47:45.744 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.744 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.744 -07 000000424 INF: FPGA: Recv ZSGSRD 30483
17-03-18 05:47:45.754 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.754 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.754 -07 000000626 INF: FPGA: Recv ZSGSRD 30486
17-03-18 05:47:45.764 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.764 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.764 -07 000000626 INF: FPGA: Recv ZSGSRD 30494
17-03-18 05:47:45.774 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.774 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30492
17-03-18 05:47:45.784 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.784 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.784 -07 000000444 INF: FPGA: Recv ZSGSRD 30488
17-03-18 05:47:45.794 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.794 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.794 -07 000000424 INF: FPGA: Recv ZSGSRD 30489
17-03-18 05:47:45.804 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.804 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:45.804 -07 000000424 INF: FPGA: Recv ZSGSRD 30483
17-03-18 05:47:45.814 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.814 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:45.814 -07 000000424 INF: FPGA: Recv ZPIEZORD 26340
17-03-18 05:47:45.824 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.1 V.
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30486 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30486 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30479 (-135.3 uncal um), Max = 30494 (-135.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30486, posNoise = 8, negNoise = 7
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: After move to -0.136173, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: Settle wait time = 1469 ms, measure time = 107 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:47:45.824 -07 000000487 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:45.874 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 05:47:45.874 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:45.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:45.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:45.874 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:45.874 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:45.874 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:45.874 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:45.874 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:47:45.874 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:45.884 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:47:45.884 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:45.884 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:47:45.894 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:47:45.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:45.934 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:46.234 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:46.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:46.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:46.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:46.274 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:46.274 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:46.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:47:46.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:47:46.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:46.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:46.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:47:46.374 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:46.374 -07 000000626 INF: Autofocus start
17-03-18 05:47:46.374 -07 000000626 INF: MeasureProfile start
17-03-18 05:47:46.374 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:46.384 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:46.384 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:46.384 -07 000000626 INF: MeasureProfile done
17-03-18 05:47:46.384 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:47:46.384 -07 000000626 INF: Autofocus finished
17-03-18 05:47:46.584 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:46.584 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:46.594 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.13617188336486. ----------
17-03-18 05:47:46.594 -07 000000610 INF: Cycle	141	Tile	12	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:46.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28254, sync = True, waitForSettling = True)
17-03-18 05:47:46.594 -07 000000610 INF: Z Motor: Moving to -0.129339 mm, started at -0.136172 mm, distance = 6.83 um
17-03-18 05:47:46.594 -07 000000610 INF: FPGA: Xmit ZDACW 28254\n [Z Motor]
17-03-18 05:47:46.594 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:47:46.604 -07 000000610 INF: FPGA: 'ZDACW 28254' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:46.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:46.604 -07 000000626 INF: FPGA: Recv ZDACR 28254
17-03-18 05:47:46.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.764 -07 000000455 INF: FPGA: Recv ZSGSRD 29422
17-03-18 05:47:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.774 -07 000000501 INF: FPGA: Recv ZSGSRD 29430
17-03-18 05:47:46.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.784 -07 000000626 INF: FPGA: Recv ZSGSRD 29424
17-03-18 05:47:46.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29422
17-03-18 05:47:46.794 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:46.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:46.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.804 -07 000000438 INF: FPGA: Recv ZSGSRD 29424
17-03-18 05:47:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.824 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.990831,
17-03-18 05:47:46.824 -07 000000461 INF: FPGA: Recv ZSGSRD 29429
17-03-18 05:47:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:46.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.844 -07 000000625 INF: FPGA: Recv ZSGSRD 29429
17-03-18 05:47:46.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:46.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.854 -07 000000461 INF: FPGA: Recv ZSGSRD 29423
17-03-18 05:47:46.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.874 -07 000000561 INF: FPGA: Recv ZSGSRD 29422
17-03-18 05:47:46.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:47:46.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:46.884 -07 000000487 INF: FPGA: Recv ZSGSRD 29421
17-03-18 05:47:46.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:46.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:46.914 -07 000000444 INF: FPGA: Recv ZPIEZORD 24921
17-03-18 05:47:46.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:46.924 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.9 V.
17-03-18 05:47:46.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29425 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29424 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29421 (-128.6 uncal um), Max = 29430 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:46.924 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29425, posNoise = 5, negNoise = 4
17-03-18 05:47:46.924 -07 000000610 INF: Z Motor: After move to -0.129339, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:46.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-18 05:47:46.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:46.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:46.924 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:46.924 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:46.924 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:46.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:46.924 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:46.924 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:46.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:46.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:46.924 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:46.924 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:46.934 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:46.934 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:46.934 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 05:47:46.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:46.944 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:47:46.944 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:47:46.944 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:47:46.944 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:47:46.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28431 150\n [Camera]
17-03-18 05:47:47.154 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:47.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:47.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:47.594 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:47.594 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:47.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:47.604 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:47.604 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:47.604 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:47:47.604 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:47.604 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:47:47.794 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28431 833
17-03-18 05:47:47.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:47.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:47:47.994 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:47:47.994 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:48.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:47:48.004 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:47:48.004 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:48.004 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:48.004 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:47:48.004 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:47:48.014 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:47:48.154 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:48.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:48.154 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:48.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:48.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:48.154 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:48.154 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:48.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:47:48.154 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:48.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 05:47:48.344 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1388
17-03-18 05:47:48.344 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:48.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28431 150' command took 2 ms to send, 1385 ms to get response, and 1395 ms overall
17-03-18 05:47:48.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:48.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129355794282451. ------
17-03-18 05:47:48.354 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:48.354 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13587 mm
17-03-18 05:47:48.354 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:48.354 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:48.354 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29681, sync = True, waitForSettling = False)
17-03-18 05:47:48.354 -07 000000461 INF: Z Motor: Moving to -0.135871 mm, started at -0.129356 mm, distance = -6.52 um
17-03-18 05:47:48.354 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:47:48.354 -07 000000625 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:47:48.364 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:48.364 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:48.364 -07 000000444 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:47:48.374 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:47:48.374 -07 000000461 INF: FPGA: Xmit ZDACW 29681\n [Z Motor]
17-03-18 05:47:48.374 -07 000000625 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:48.374 -07 000000625 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:48.374 -07 000000625 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:47:48.374 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:47:48.384 -07 000000461 INF: FPGA: 'ZDACW 29681' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:47:48.384 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:48.394 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:48.404 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:48.404 -07 000000462 INF: FPGA: Recv ZDACR 29681
17-03-18 05:47:48.414 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:48.414 -07 000000461 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:47:48.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:47:48.544 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:47:48.544 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:48.544 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:47:48.544 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:47:48.544 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:48.544 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:48.554 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:48.554 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:48.554 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:47:48.584 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:48.584 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:47:48.764 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:47:48.764 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:47:48.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:48.824 -07 000000561 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:47:48.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:47:48.824 -07 000000625 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:48.824 -07 000000625 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:47:48.824 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 05:47:49.774 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:49.774 -07 000000444 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:47:49.784 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:49.784 -07 000000625 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:49.814 -07 000000625 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:49.814 -07 000000625 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:47:49.814 -07 000000625 INF: Y Motor: Moved to 69.8623 after 1456 ms (table move)
17-03-18 05:47:49.814 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135871 mm (DAC = 29681)
17-03-18 05:47:49.814 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30435
17-03-18 05:47:49.824 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:47:49.824 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30441
17-03-18 05:47:49.834 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:49.834 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.834 -07 000000561 INF: FPGA: Recv ZSGSRD 30446
17-03-18 05:47:49.844 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.844 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.844 -07 000000561 INF: FPGA: Recv ZSGSRD 30445
17-03-18 05:47:49.854 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:49.854 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.854 -07 000000461 INF: FPGA: Recv ZSGSRD 30442
17-03-18 05:47:49.864 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.864 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30436
17-03-18 05:47:49.874 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:49.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.874 -07 000000438 INF: FPGA: Recv ZSGSRD 30440
17-03-18 05:47:49.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:49.884 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.884 -07 000000625 INF: FPGA: Recv ZSGSRD 30442
17-03-18 05:47:49.894 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.894 -07 000000462 INF: FPGA: Recv ZSGSRD 30440
17-03-18 05:47:49.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:49.904 -07 000000462 INF: FPGA: Recv ZSGSRD 30439
17-03-18 05:47:49.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.914 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:49.914 -07 000000438 INF: FPGA: Recv ZPIEZORD 26283
17-03-18 05:47:49.924 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.1 V.
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30441 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30440 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30435 (-135.1 uncal um), Max = 30446 (-135.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30441, posNoise = 5, negNoise = 6
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: After move to -0.135871, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: Settle wait time = 1464 ms, measure time = 102 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:47:49.924 -07 000000487 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:49.974 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:47:49.974 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:49.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:49.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:49.974 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:49.974 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:49.974 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:49.974 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:49.974 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:47:49.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:49.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:49.984 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:49.984 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:47:49.984 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:47:49.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:50.034 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:50.334 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:50.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:50.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:50.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:47:50.374 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:50.374 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:50.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:47:50.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:47:50.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:50.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:47:50.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:47:50.474 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:50.474 -07 000000438 INF: Autofocus start
17-03-18 05:47:50.474 -07 000000438 INF: MeasureProfile start
17-03-18 05:47:50.474 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:50.484 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:50.484 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:50.494 -07 000000438 INF: MeasureProfile done
17-03-18 05:47:50.494 -07 000000438 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:47:50.494 -07 000000438 INF: Autofocus finished
17-03-18 05:47:50.684 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:50.684 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:50.684 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.13588279381848. ----------
17-03-18 05:47:50.684 -07 000000610 INF: Cycle	141	Tile	13	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:50.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28222, sync = True, waitForSettling = True)
17-03-18 05:47:50.694 -07 000000610 INF: Z Motor: Moving to -0.129192 mm, started at -0.135883 mm, distance = 6.69 um
17-03-18 05:47:50.704 -07 000000610 INF: FPGA: Xmit ZDACW 28222\n [Z Motor]
17-03-18 05:47:50.704 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:47:50.714 -07 000000610 INF: FPGA: 'ZDACW 28222' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:47:50.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:50.714 -07 000000444 INF: FPGA: Recv ZDACR 28222
17-03-18 05:47:50.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.874 -07 000000438 INF: FPGA: Recv ZSGSRD 29405
17-03-18 05:47:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:50.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29400
17-03-18 05:47:50.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29402
17-03-18 05:47:50.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.904 -07 000000438 INF: FPGA: Recv ZSGSRD 29395
17-03-18 05:47:50.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.914 -07 000000424 INF: FPGA: Recv ZSGSRD 29402
17-03-18 05:47:50.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29408
17-03-18 05:47:50.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.934 -07 000000438 INF: FPGA: Recv ZSGSRD 29397
17-03-18 05:47:50.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.944 -07 000000444 INF: FPGA: Recv ZSGSRD 29390
17-03-18 05:47:50.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.954 -07 000000438 INF: FPGA: Recv ZSGSRD 29399
17-03-18 05:47:50.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:50.964 -07 000000438 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:47:50.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:50.974 -07 000000444 INF: FPGA: Recv ZPIEZORD 24911
17-03-18 05:47:50.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:50.984 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.8 V.
17-03-18 05:47:50.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29400 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29390 (-128.4 uncal um), Max = 29408 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:47:50.984 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29400, posNoise = 8, negNoise = 10
17-03-18 05:47:50.984 -07 000000610 INF: Z Motor: After move to -0.129192, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:50.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:47:50.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:50.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:50.984 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:50.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:50.984 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:50.984 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:50.984 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:50.984 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:50.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:50.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:50.984 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:50.984 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:50.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:50.994 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:50.994 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:50.994 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:51.004 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:47:51.004 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:47:51.004 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:47:51.004 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:47:51.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28398 150\n [Camera]
17-03-18 05:47:51.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:51.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:51.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:51.654 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:51.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:51.654 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:51.654 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:51.654 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:47:51.654 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:51.654 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:51.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:47:51.794 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:51.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:51.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28398 830
17-03-18 05:47:51.994 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:52.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:47:52.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:47:52.054 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:52.064 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:47:52.064 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:47:52.064 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:52.064 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:52.064 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:47:52.064 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:52.074 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:47:52.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:47:52.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:47:52.214 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:52.214 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:52.214 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:47:52.214 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:47:52.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:47:52.214 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:52.214 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:52.214 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:47:52.234 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.993549,
17-03-18 05:47:52.404 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:52.404 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:52.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28398 150' command took 2 ms to send, 1384 ms to get response, and 1396 ms overall
17-03-18 05:47:52.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:52.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129195188978907. ------
17-03-18 05:47:52.524 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13552 mm
17-03-18 05:47:52.524 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:52.524 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:52.524 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:52.524 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:47:52.524 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:47:52.524 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-18 05:47:52.524 -07 000000487 INF: Z Motor: Moving to -0.135523 mm, started at -0.129195 mm, distance = -6.33 um
17-03-18 05:47:52.534 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:47:52.534 -07 000000487 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-18 05:47:52.534 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:47:52.544 -07 000000487 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:52.544 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:52.544 -07 000000611 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:47:52.554 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:47:52.554 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:52.554 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:52.554 -07 000000561 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:47:52.554 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:52.564 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:52.564 -07 000000611 INF: FPGA: Recv ZDACR 29605
17-03-18 05:47:52.574 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:52.574 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:52.574 -07 000000487 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:47:52.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:47:52.604 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:47:52.614 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:47:52.614 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:52.614 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:47:52.614 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:52.614 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:52.614 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:47:52.614 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:47:52.624 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:47:52.754 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:52.754 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:47:52.944 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:47:52.944 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:47:52.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:53.004 -07 000000382 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:47:53.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:47:53.004 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:53.004 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:47:53.004 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.117 mm/sec
17-03-18 05:47:53.954 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:53.954 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:47:53.964 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:53.964 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:53.994 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:53.994 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:53.994 -07 000000561 INF: Y Motor: Moved to 70.6875 after 1462 ms (table move)
17-03-18 05:47:53.994 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-18 05:47:53.994 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:53.994 -07 000000012 INF: FPGA: Recv ZSGSRD 30393
17-03-18 05:47:54.004 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:47:54.004 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.004 -07 000000561 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:47:54.014 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.014 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.014 -07 000000012 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:47:54.024 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.024 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.024 -07 000000561 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:47:54.034 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.034 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.034 -07 000000611 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:47:54.044 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.044 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.044 -07 000000561 INF: FPGA: Recv ZSGSRD 30388
17-03-18 05:47:54.054 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.054 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.054 -07 000000611 INF: FPGA: Recv ZSGSRD 30385
17-03-18 05:47:54.064 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.064 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.064 -07 000000444 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:47:54.074 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.074 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.074 -07 000000611 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:47:54.084 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.084 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:54.084 -07 000000561 INF: FPGA: Recv ZSGSRD 30389
17-03-18 05:47:54.094 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.094 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:54.094 -07 000000012 INF: FPGA: Recv ZPIEZORD 26217
17-03-18 05:47:54.104 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.2 V.
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30384 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30381 (-134.7 uncal um), Max = 30393 (-134.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 7, negNoise = 5
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: After move to -0.135523, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:47:54.104 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:54.154 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:47:54.154 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:54.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:54.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:54.154 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:54.154 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:54.154 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:54.154 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:54.154 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:47:54.154 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:54.154 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:54.154 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:54.164 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:47:54.164 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:47:54.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:54.214 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:54.514 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:54.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:54.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:54.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:54.554 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:54.554 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:54.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:47:54.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:47:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:54.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:47:54.654 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:54.654 -07 000000382 INF: Autofocus start
17-03-18 05:47:54.654 -07 000000382 INF: MeasureProfile start
17-03-18 05:47:54.654 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:54.664 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:54.664 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:54.664 -07 000000382 INF: MeasureProfile done
17-03-18 05:47:54.664 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:47:54.674 -07 000000382 INF: Autofocus finished
17-03-18 05:47:54.864 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:54.864 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:54.864 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135529462150683. ----------
17-03-18 05:47:54.864 -07 000000610 INF: Cycle	141	Tile	14	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:54.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28099, sync = True, waitForSettling = True)
17-03-18 05:47:54.874 -07 000000610 INF: Z Motor: Moving to -0.128629 mm, started at -0.135529 mm, distance = 6.90 um
17-03-18 05:47:54.874 -07 000000610 INF: FPGA: Xmit ZDACW 28099\n [Z Motor]
17-03-18 05:47:54.874 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:47:54.884 -07 000000610 INF: FPGA: 'ZDACW 28099' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:54.884 -07 000000487 INF: FPGA: Recv ZDACR 28099
17-03-18 05:47:54.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:54.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.044 -07 000000012 INF: FPGA: Recv ZSGSRD 29312
17-03-18 05:47:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.054 -07 000000444 INF: FPGA: Recv ZSGSRD 29315
17-03-18 05:47:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29312
17-03-18 05:47:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.074 -07 000000487 INF: FPGA: Recv ZSGSRD 29308
17-03-18 05:47:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.084 -07 000000444 INF: FPGA: Recv ZSGSRD 29313
17-03-18 05:47:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.094 -07 000000611 INF: FPGA: Recv ZSGSRD 29316
17-03-18 05:47:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.104 -07 000000382 INF: FPGA: Recv ZSGSRD 29313
17-03-18 05:47:55.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.114 -07 000000487 INF: FPGA: Recv ZSGSRD 29312
17-03-18 05:47:55.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.124 -07 000000444 INF: FPGA: Recv ZSGSRD 29308
17-03-18 05:47:55.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:55.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29313
17-03-18 05:47:55.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:55.144 -07 000000012 INF: FPGA: Recv ZPIEZORD 24778
17-03-18 05:47:55.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:55.154 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.9 V.
17-03-18 05:47:55.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29312 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29312 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29308 (-127.8 uncal um), Max = 29316 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:55.154 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29312, posNoise = 4, negNoise = 4
17-03-18 05:47:55.154 -07 000000610 INF: Z Motor: After move to -0.128629, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:55.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:47:55.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:55.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:55.154 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:55.154 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:55.154 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:55.154 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:55.154 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:55.154 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:55.154 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:55.154 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:55.154 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:55.154 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:55.154 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:55.154 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:55.164 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:47:55.164 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:55.164 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:47:55.164 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:47:55.174 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:47:55.174 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:47:55.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28276 150\n [Camera]
17-03-18 05:47:55.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:55.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:55.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:55.814 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:55.824 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:47:55.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:47:55.824 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:55.824 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:55.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:47:55.824 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:55.824 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:47:56.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28276 830
17-03-18 05:47:56.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:47:56.224 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:47:56.224 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:47:56.224 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:56.224 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:47:56.224 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:47:56.224 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:56.224 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:47:56.224 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:47:56.224 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:56.234 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:47:56.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1195
17-03-18 05:47:56.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1195
17-03-18 05:47:56.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:47:56.384 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1195
17-03-18 05:47:56.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1195
17-03-18 05:47:56.384 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:47:56.384 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:47:56.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:47:56.384 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:47:56.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:47:56.564 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:47:56.564 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:47:56.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28276 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-18 05:47:56.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:47:56.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128629858310432. ------
17-03-18 05:47:56.694 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:56.694 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13532 mm
17-03-18 05:47:56.694 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:47:56.694 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29560, sync = True, waitForSettling = False)
17-03-18 05:47:56.694 -07 000000479 INF: Z Motor: Moving to -0.135317 mm, started at -0.128630 mm, distance = -6.69 um
17-03-18 05:47:56.694 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:56.694 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:47:56.694 -07 000000444 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:47:56.704 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:47:56.704 -07 000000479 INF: FPGA: Xmit ZDACW 29560\n [Z Motor]
17-03-18 05:47:56.704 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:47:56.714 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:56.714 -07 000000479 INF: FPGA: 'ZDACW 29560' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:47:56.714 -07 000000608 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:47:56.724 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:47:56.724 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:47:56.724 -07 000000444 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:56.724 -07 000000444 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:47:56.724 -07 000000444 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:47:56.734 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:56.734 -07 000000487 INF: FPGA: Recv ZDACR 29560
17-03-18 05:47:56.744 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:47:56.744 -07 000000479 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:47:56.744 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:47:56.774 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:47:56.774 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:47:56.774 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:56.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:47:56.784 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:47:56.784 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:56.784 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:56.784 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:47:56.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:47:56.794 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:47:56.794 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:47:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:47:56.924 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:47:56.924 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:47:57.124 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:47:57.124 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 05:47:57.174 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:57.174 -07 000000479 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:47:57.184 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:47:57.184 -07 000000444 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:57.184 -07 000000444 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:47:57.184 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.845 mm, average velocity = 2.108 mm/sec
17-03-18 05:47:57.594 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.981281,
17-03-18 05:47:58.134 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:47:58.134 -07 000000561 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:47:58.144 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:58.144 -07 000000444 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:47:58.174 -07 000000444 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:47:58.174 -07 000000444 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:47:58.174 -07 000000444 INF: Y Motor: Moved to 71.5176 after 1474 ms (table move)
17-03-18 05:47:58.174 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135317 mm (DAC = 29560)
17-03-18 05:47:58.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.174 -07 000000626 INF: FPGA: Recv ZSGSRD 30355
17-03-18 05:47:58.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:58.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.184 -07 000000487 INF: FPGA: Recv ZSGSRD 30349
17-03-18 05:47:58.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.194 -07 000000608 INF: FPGA: Recv ZSGSRD 30359
17-03-18 05:47:58.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.204 -07 000000462 INF: FPGA: Recv ZSGSRD 30359
17-03-18 05:47:58.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.214 -07 000000626 INF: FPGA: Recv ZSGSRD 30350
17-03-18 05:47:58.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.224 -07 000000444 INF: FPGA: Recv ZSGSRD 30356
17-03-18 05:47:58.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.234 -07 000000608 INF: FPGA: Recv ZSGSRD 30355
17-03-18 05:47:58.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.244 -07 000000444 INF: FPGA: Recv ZSGSRD 30358
17-03-18 05:47:58.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.254 -07 000000626 INF: FPGA: Recv ZSGSRD 30350
17-03-18 05:47:58.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:58.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30346
17-03-18 05:47:58.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.274 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:58.274 -07 000000626 INF: FPGA: Recv ZPIEZORD 26198
17-03-18 05:47:58.284 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.1 V.
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30354 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30355 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30346 (-134.5 uncal um), Max = 30359 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30354, posNoise = 5, negNoise = 8
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: After move to -0.135317, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: Settle wait time = 1479 ms, measure time = 105 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:47:58.284 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:47:58.334 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 05:47:58.334 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:47:58.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:58.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:58.334 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:58.334 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:47:58.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:58.334 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:58.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:58.334 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:47:58.344 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:47:58.344 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:47:58.354 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:47:58.354 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:47:58.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:47:58.394 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:47:58.694 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:47:58.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:47:58.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:47:58.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:47:58.734 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:47:58.734 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:47:58.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:47:58.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:47:58.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:47:58.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:47:58.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:47:58.834 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:47:58.834 -07 000000444 INF: Autofocus start
17-03-18 05:47:58.834 -07 000000444 INF: MeasureProfile start
17-03-18 05:47:58.834 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:47:58.844 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:47:58.844 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:47:58.844 -07 000000444 INF: MeasureProfile done
17-03-18 05:47:58.844 -07 000000444 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 05:47:58.854 -07 000000444 INF: Autofocus finished
17-03-18 05:47:59.044 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:47:59.044 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:47:59.044 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135323887362147. ----------
17-03-18 05:47:59.044 -07 000000610 INF: Cycle	141	Tile	15	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:47:59.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27987, sync = True, waitForSettling = True)
17-03-18 05:47:59.054 -07 000000610 INF: Z Motor: Moving to -0.128116 mm, started at -0.135324 mm, distance = 7.21 um
17-03-18 05:47:59.054 -07 000000610 INF: FPGA: Xmit ZDACW 27987\n [Z Motor]
17-03-18 05:47:59.054 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:47:59.064 -07 000000610 INF: FPGA: 'ZDACW 27987' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:47:59.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:47:59.064 -07 000000608 INF: FPGA: Recv ZDACR 27987
17-03-18 05:47:59.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:47:59.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.224 -07 000000487 INF: FPGA: Recv ZSGSRD 29234
17-03-18 05:47:59.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:47:59.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.234 -07 000000608 INF: FPGA: Recv ZSGSRD 29238
17-03-18 05:47:59.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29229
17-03-18 05:47:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29230
17-03-18 05:47:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.264 -07 000000626 INF: FPGA: Recv ZSGSRD 29232
17-03-18 05:47:59.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.274 -07 000000606 INF: FPGA: Recv ZSGSRD 29238
17-03-18 05:47:59.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.284 -07 000000608 INF: FPGA: Recv ZSGSRD 29229
17-03-18 05:47:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.294 -07 000000462 INF: FPGA: Recv ZSGSRD 29231
17-03-18 05:47:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.304 -07 000000626 INF: FPGA: Recv ZSGSRD 29232
17-03-18 05:47:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:47:59.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29234
17-03-18 05:47:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:47:59.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 24731
17-03-18 05:47:59.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:47:59.334 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.9 V.
17-03-18 05:47:59.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29229 (-127.3 uncal um), Max = 29238 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:47:59.334 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 5, negNoise = 4
17-03-18 05:47:59.334 -07 000000610 INF: Z Motor: After move to -0.128116, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:47:59.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:47:59.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:47:59.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:47:59.334 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:47:59.334 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:47:59.334 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:47:59.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:47:59.334 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:47:59.334 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:47:59.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:47:59.334 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:47:59.334 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:47:59.334 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:47:59.344 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:47:59.344 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:47:59.344 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:47:59.344 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:47:59.354 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:47:59.354 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:47:59.354 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:47:59.354 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:47:59.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28164 150\n [Camera]
17-03-18 05:47:59.554 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:47:59.994 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:47:59.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:47:59.994 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:00.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:48:00.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:48:00.004 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:00.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:00.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:48:00.004 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:00.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:48:00.194 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28164 830
17-03-18 05:48:00.334 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:48:00.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:48:00.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:48:00.374 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:48:00.374 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:00.374 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:48:00.374 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:00.384 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:00.384 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:48:00.384 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:48:00.394 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:48:00.554 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:48:00.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:48:00.554 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:00.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:48:00.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:48:00.554 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:00.554 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:00.554 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:48:00.564 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:00.564 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 05:48:00.744 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:48:00.744 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:48:00.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28164 150' command took 2 ms to send, 1389 ms to get response, and 1396 ms overall
17-03-18 05:48:00.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:48:00.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128122345551233. ------
17-03-18 05:48:00.754 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:00.754 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13452 mm
17-03-18 05:48:00.754 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:48:00.754 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:00.764 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:48:00.764 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:48:00.764 -07 000000608 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 05:48:00.764 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:00.764 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29386, sync = True, waitForSettling = False)
17-03-18 05:48:00.764 -07 000000438 INF: Z Motor: Moving to -0.134520 mm, started at -0.128122 mm, distance = -6.40 um
17-03-18 05:48:00.764 -07 000000455 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:48:00.774 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:00.774 -07 000000608 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:00.774 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:48:00.774 -07 000000608 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:48:00.774 -07 000000608 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:48:00.784 -07 000000438 INF: FPGA: Xmit ZDACW 29386\n [Z Motor]
17-03-18 05:48:00.784 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:48:00.794 -07 000000438 INF: FPGA: 'ZDACW 29386' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:48:00.794 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:48:00.804 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:00.804 -07 000000479 INF: FPGA: Recv ZDACR 29386
17-03-18 05:48:00.814 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:48:00.814 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:48:00.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:48:00.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:48:00.944 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:00.944 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:00.944 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:48:00.944 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:48:00.944 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:00.954 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:00.954 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:48:00.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:48:00.974 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:48:00.974 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:48:01.164 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:48:01.174 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 05:48:01.224 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:01.224 -07 000000462 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:48:01.234 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:01.234 -07 000000608 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:01.234 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:48:01.234 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.134 mm/sec
17-03-18 05:48:01.794 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:01.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:02.184 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:02.184 -07 000000606 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:48:02.194 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:02.194 -07 000000608 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:02.224 -07 000000608 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:48:02.224 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:48:02.224 -07 000000608 INF: Y Motor: Moved to 72.3481 after 1462 ms (table move)
17-03-18 05:48:02.224 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134520 mm (DAC = 29386)
17-03-18 05:48:02.224 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.224 -07 000000561 INF: FPGA: Recv ZSGSRD 30231
17-03-18 05:48:02.234 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:48:02.234 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.234 -07 000000444 INF: FPGA: Recv ZSGSRD 30224
17-03-18 05:48:02.244 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.244 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.244 -07 000000608 INF: FPGA: Recv ZSGSRD 30220
17-03-18 05:48:02.254 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.254 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.254 -07 000000561 INF: FPGA: Recv ZSGSRD 30226
17-03-18 05:48:02.264 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.264 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30228
17-03-18 05:48:02.274 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.274 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.274 -07 000000444 INF: FPGA: Recv ZSGSRD 30227
17-03-18 05:48:02.284 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.284 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.284 -07 000000462 INF: FPGA: Recv ZSGSRD 30235
17-03-18 05:48:02.294 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.294 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.294 -07 000000444 INF: FPGA: Recv ZSGSRD 30229
17-03-18 05:48:02.304 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.304 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.304 -07 000000608 INF: FPGA: Recv ZSGSRD 30230
17-03-18 05:48:02.314 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.314 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:02.314 -07 000000444 INF: FPGA: Recv ZSGSRD 30226
17-03-18 05:48:02.324 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.324 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:02.324 -07 000000606 INF: FPGA: Recv ZPIEZORD 26039
17-03-18 05:48:02.334 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.2 V.
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30228 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30228 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30220 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30228, posNoise = 7, negNoise = 8
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: After move to -0.134520, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:48:02.334 -07 000000487 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:48:02.384 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:48:02.384 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:48:02.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:02.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:02.384 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:02.384 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:02.384 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:48:02.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:02.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:02.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:48:02.394 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:48:02.394 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:48:02.404 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:48:02.404 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:48:02.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:48:02.454 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:48:02.754 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:48:02.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:48:02.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:48:02.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:48:02.794 -07 000000424 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:48:02.794 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:48:02.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 05:48:02.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:48:02.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:02.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:48:02.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:48:02.894 -07 000000455 INF: Autofocus start
17-03-18 05:48:02.894 -07 000000455 INF: MeasureProfile start
17-03-18 05:48:02.894 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:02.894 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:02.904 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:48:02.904 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:48:02.904 -07 000000455 INF: MeasureProfile done
17-03-18 05:48:02.904 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:48:02.904 -07 000000455 INF: Autofocus finished
17-03-18 05:48:02.954 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.973092,
17-03-18 05:48:03.104 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:48:03.104 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:48:03.104 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.134514436632285. ----------
17-03-18 05:48:03.104 -07 000000610 INF: Cycle	141	Tile	16	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:48:03.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27910, sync = True, waitForSettling = True)
17-03-18 05:48:03.114 -07 000000610 INF: Z Motor: Moving to -0.127764 mm, started at -0.134514 mm, distance = 6.75 um
17-03-18 05:48:03.114 -07 000000610 INF: FPGA: Xmit ZDACW 27910\n [Z Motor]
17-03-18 05:48:03.114 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:48:03.124 -07 000000610 INF: FPGA: 'ZDACW 27910' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:03.124 -07 000000606 INF: FPGA: Recv ZDACR 27910
17-03-18 05:48:03.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:48:03.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29182
17-03-18 05:48:03.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:03.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29184
17-03-18 05:48:03.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29177
17-03-18 05:48:03.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.314 -07 000000479 INF: FPGA: Recv ZSGSRD 29175
17-03-18 05:48:03.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29185
17-03-18 05:48:03.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.334 -07 000000479 INF: FPGA: Recv ZSGSRD 29181
17-03-18 05:48:03.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.344 -07 000000626 INF: FPGA: Recv ZSGSRD 29182
17-03-18 05:48:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.354 -07 000000479 INF: FPGA: Recv ZSGSRD 29177
17-03-18 05:48:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29176
17-03-18 05:48:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:03.374 -07 000000479 INF: FPGA: Recv ZSGSRD 29183
17-03-18 05:48:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:03.384 -07 000000626 INF: FPGA: Recv ZPIEZORD 24674
17-03-18 05:48:03.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:03.394 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.9 V.
17-03-18 05:48:03.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29180 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29182 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29175 (-127.0 uncal um), Max = 29185 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:48:03.394 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29180, posNoise = 5, negNoise = 5
17-03-18 05:48:03.394 -07 000000610 INF: Z Motor: After move to -0.127764, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:03.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:48:03.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:03.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:03.394 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:03.394 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:03.394 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:48:03.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:03.394 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:48:03.394 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:48:03.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:48:03.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:48:03.394 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:48:03.394 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:48:03.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:48:03.404 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:48:03.404 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:48:03.404 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:48:03.414 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:48:03.414 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:48:03.414 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:48:03.414 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:48:03.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28086 150\n [Camera]
17-03-18 05:48:03.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:48:04.054 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:48:04.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:48:04.054 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:04.054 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:04.054 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:48:04.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:48:04.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:48:04.064 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:04.064 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:04.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:48:04.254 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28086 830
17-03-18 05:48:04.404 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:48:04.434 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:48:04.434 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:48:04.434 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:04.434 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:04.434 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:48:04.434 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:48:04.434 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:04.444 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:04.444 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:48:04.444 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:48:04.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:48:04.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:48:04.614 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:04.614 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:04.614 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:48:04.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:48:04.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:48:04.614 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:04.614 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:04.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:48:04.804 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:48:04.804 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:48:04.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28086 150' command took 2 ms to send, 1502 ms to get response, and 1509 ms overall
17-03-18 05:48:04.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:48:04.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.12778186230772. ------
17-03-18 05:48:04.924 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:04.924 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13443 mm
17-03-18 05:48:04.924 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:48:04.934 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:04.934 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:48:04.934 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:48:04.934 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:48:04.934 -07 000000625 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 05:48:04.934 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29366, sync = True, waitForSettling = False)
17-03-18 05:48:04.934 -07 000000626 INF: Z Motor: Moving to -0.134429 mm, started at -0.127782 mm, distance = -6.65 um
17-03-18 05:48:04.944 -07 000000626 INF: FPGA: Xmit ZDACW 29366\n [Z Motor]
17-03-18 05:48:04.944 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:48:04.954 -07 000000626 INF: FPGA: 'ZDACW 29366' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:48:04.954 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:04.954 -07 000000012 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:48:04.964 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:48:04.964 -07 000000625 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:04.964 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:04.964 -07 000000382 INF: FPGA: Recv ZDACR 29366
17-03-18 05:48:04.964 -07 000000625 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:48:04.964 -07 000000625 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:48:04.974 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:48:04.974 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:48:04.974 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:48:05.014 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:48:05.014 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:48:05.014 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:05.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:48:05.014 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:48:05.014 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:05.014 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:05.024 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:48:05.024 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:48:05.024 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:48:05.134 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:48:05.134 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:48:05.344 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:48:05.344 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 05:48:05.394 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:05.404 -07 000000438 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:48:05.404 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:48:05.404 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:05.404 -07 000000625 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:48:05.404 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.216 mm/sec
17-03-18 05:48:06.354 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:06.354 -07 000000608 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:48:06.364 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.364 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:06.394 -07 000000625 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:48:06.394 -07 000000625 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:48:06.394 -07 000000625 INF: Y Motor: Moved to 73.1748 after 1459 ms (table move)
17-03-18 05:48:06.394 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134429 mm (DAC = 29366)
17-03-18 05:48:06.394 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.394 -07 000000626 INF: FPGA: Recv ZSGSRD 30219
17-03-18 05:48:06.404 -07 000000606 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:48:06.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30215
17-03-18 05:48:06.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.414 -07 000000625 INF: FPGA: Recv ZSGSRD 30213
17-03-18 05:48:06.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.424 -07 000000625 INF: FPGA: Recv ZSGSRD 30210
17-03-18 05:48:06.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.434 -07 000000625 INF: FPGA: Recv ZSGSRD 30219
17-03-18 05:48:06.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.444 -07 000000012 INF: FPGA: Recv ZSGSRD 30222
17-03-18 05:48:06.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.454 -07 000000012 INF: FPGA: Recv ZSGSRD 30217
17-03-18 05:48:06.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.464 -07 000000479 INF: FPGA: Recv ZSGSRD 30209
17-03-18 05:48:06.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.474 -07 000000479 INF: FPGA: Recv ZSGSRD 30214
17-03-18 05:48:06.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:06.484 -07 000000479 INF: FPGA: Recv ZSGSRD 30222
17-03-18 05:48:06.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.494 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:06.494 -07 000000479 INF: FPGA: Recv ZPIEZORD 25990
17-03-18 05:48:06.504 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -9.3 V.
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30216 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30216 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30209 (-133.6 uncal um), Max = 30222 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30216, posNoise = 6, negNoise = 7
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: After move to -0.134429, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:48:06.504 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:48:06.554 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 05:48:06.554 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:48:06.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:06.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:06.554 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:06.554 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:48:06.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:06.554 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:06.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:06.554 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:48:06.564 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:48:06.564 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:48:06.574 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:48:06.574 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:48:06.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:48:06.624 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:48:06.794 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:06.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:06.924 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:48:06.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:48:06.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:48:06.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:48:06.964 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:48:06.964 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:48:06.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:48:07.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:48:07.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:07.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:48:07.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:48:07.064 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:07.064 -07 000000438 INF: Autofocus start
17-03-18 05:48:07.064 -07 000000438 INF: MeasureProfile start
17-03-18 05:48:07.064 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:07.074 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:48:07.074 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:48:07.084 -07 000000438 INF: MeasureProfile done
17-03-18 05:48:07.084 -07 000000438 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 05:48:07.084 -07 000000438 INF: Autofocus finished
17-03-18 05:48:07.274 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:48:07.274 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:48:07.274 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134437346086584. ----------
17-03-18 05:48:07.284 -07 000000610 INF: Cycle	141	Tile	17	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:48:07.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27827, sync = True, waitForSettling = True)
17-03-18 05:48:07.284 -07 000000610 INF: Z Motor: Moving to -0.127384 mm, started at -0.134437 mm, distance = 7.05 um
17-03-18 05:48:07.284 -07 000000610 INF: FPGA: Xmit ZDACW 27827\n [Z Motor]
17-03-18 05:48:07.284 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:48:07.294 -07 000000610 INF: FPGA: 'ZDACW 27827' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:48:07.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:07.294 -07 000000501 INF: FPGA: Recv ZDACR 27827
17-03-18 05:48:07.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:48:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.454 -07 000000561 INF: FPGA: Recv ZSGSRD 29120
17-03-18 05:48:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29124
17-03-18 05:48:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29113
17-03-18 05:48:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.484 -07 000000461 INF: FPGA: Recv ZSGSRD 29118
17-03-18 05:48:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.494 -07 000000382 INF: FPGA: Recv ZSGSRD 29115
17-03-18 05:48:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.504 -07 000000611 INF: FPGA: Recv ZSGSRD 29122
17-03-18 05:48:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29118
17-03-18 05:48:07.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.524 -07 000000501 INF: FPGA: Recv ZSGSRD 29122
17-03-18 05:48:07.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.534 -07 000000611 INF: FPGA: Recv ZSGSRD 29117
17-03-18 05:48:07.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:07.544 -07 000000626 INF: FPGA: Recv ZSGSRD 29120
17-03-18 05:48:07.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:07.554 -07 000000625 INF: FPGA: Recv ZPIEZORD 24574
17-03-18 05:48:07.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:07.564 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -10.0 V.
17-03-18 05:48:07.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29119 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29119 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29113 (-126.6 uncal um), Max = 29124 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:48:07.564 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29119, posNoise = 5, negNoise = 6
17-03-18 05:48:07.564 -07 000000610 INF: Z Motor: After move to -0.127384, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:07.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:48:07.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:07.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:07.564 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:07.564 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:48:07.564 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:48:07.564 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:48:07.564 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:07.564 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:07.564 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:48:07.564 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:48:07.564 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:07.564 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:48:07.574 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:48:07.574 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:48:07.574 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:48:07.574 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:48:07.584 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:48:07.584 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:48:07.584 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:48:07.584 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:48:07.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28004 150\n [Camera]
17-03-18 05:48:07.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:48:08.224 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:48:08.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:48:08.234 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:08.234 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:48:08.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:48:08.234 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:08.234 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:08.234 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:48:08.244 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:08.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:48:08.314 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 4.030322,
17-03-18 05:48:08.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28004 830
17-03-18 05:48:08.574 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:48:08.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:48:08.604 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:48:08.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:08.614 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:48:08.614 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 05:48:08.614 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:08.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:08.614 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:48:08.614 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:08.624 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:48:08.784 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:48:08.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:48:08.784 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:08.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:48:08.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:48:08.784 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:08.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:08.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:48:08.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:08.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:48:08.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-18 05:48:08.974 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:48:08.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28004 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-18 05:48:08.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:48:08.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127389985367072. ------
17-03-18 05:48:09.104 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13321 mm
17-03-18 05:48:09.104 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:48:09.104 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:09.104 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:09.104 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:48:09.104 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:48:09.104 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29100, sync = True, waitForSettling = False)
17-03-18 05:48:09.104 -07 000000611 INF: Z Motor: Moving to -0.133211 mm, started at -0.127390 mm, distance = -5.82 um
17-03-18 05:48:09.114 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:48:09.114 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:09.114 -07 000000012 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:48:09.124 -07 000000611 INF: FPGA: Xmit ZDACW 29100\n [Z Motor]
17-03-18 05:48:09.124 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:48:09.124 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:09.124 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:48:09.124 -07 000000625 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:48:09.124 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:48:09.134 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:48:09.134 -07 000000611 INF: FPGA: 'ZDACW 29100' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:48:09.144 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:48:09.154 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:09.154 -07 000000012 INF: FPGA: Recv ZDACR 29100
17-03-18 05:48:09.164 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:48:09.164 -07 000000611 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:48:09.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:48:09.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:48:09.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:09.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:48:09.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:48:09.184 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:09.194 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:09.194 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:09.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:48:09.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:48:09.334 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:48:09.334 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:48:09.514 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:48:09.514 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:48:09.554 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:09.564 -07 000000461 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:48:09.564 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:48:09.564 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:09.564 -07 000000625 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:48:09.564 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-18 05:48:10.514 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:10.514 -07 000000608 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:48:10.524 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.524 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:10.544 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:48:10.544 -07 000000625 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:48:10.544 -07 000000625 INF: Y Motor: Moved to 74.0068 after 1436 ms (table move)
17-03-18 05:48:10.544 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133211 mm (DAC = 29100)
17-03-18 05:48:10.544 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.554 -07 000000611 INF: FPGA: Recv ZSGSRD 30027
17-03-18 05:48:10.554 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:48:10.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.554 -07 000000479 INF: FPGA: Recv ZSGSRD 30030
17-03-18 05:48:10.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.564 -07 000000611 INF: FPGA: Recv ZSGSRD 30024
17-03-18 05:48:10.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.574 -07 000000625 INF: FPGA: Recv ZSGSRD 30024
17-03-18 05:48:10.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.584 -07 000000611 INF: FPGA: Recv ZSGSRD 30023
17-03-18 05:48:10.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.594 -07 000000012 INF: FPGA: Recv ZSGSRD 30022
17-03-18 05:48:10.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.604 -07 000000479 INF: FPGA: Recv ZSGSRD 30020
17-03-18 05:48:10.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.614 -07 000000012 INF: FPGA: Recv ZSGSRD 30025
17-03-18 05:48:10.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.624 -07 000000611 INF: FPGA: Recv ZSGSRD 30026
17-03-18 05:48:10.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:10.634 -07 000000461 INF: FPGA: Recv ZSGSRD 30033
17-03-18 05:48:10.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.644 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:10.644 -07 000000611 INF: FPGA: Recv ZPIEZORD 25793
17-03-18 05:48:10.654 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.3 V.
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30025 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30020 (-132.4 uncal um), Max = 30033 (-132.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30025, posNoise = 8, negNoise = 5
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: After move to -0.133211, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-18 05:48:10.654 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:48:10.704 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 05:48:10.704 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:48:10.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:10.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:10.704 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:10.704 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:10.704 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:48:10.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:10.714 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:10.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:48:10.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:48:10.714 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:48:10.714 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:48:10.714 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:48:10.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:48:10.764 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:48:11.064 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:48:11.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:48:11.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:48:11.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:48:11.104 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:48:11.104 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:48:11.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:48:11.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:48:11.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:11.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:48:11.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:48:11.204 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:11.204 -07 000000462 INF: Autofocus start
17-03-18 05:48:11.204 -07 000000462 INF: MeasureProfile start
17-03-18 05:48:11.204 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:11.214 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:48:11.214 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:48:11.214 -07 000000462 INF: MeasureProfile done
17-03-18 05:48:11.214 -07 000000462 INF: X=144  Z correction [um]=0.6687477
17-03-18 05:48:11.214 -07 000000462 INF: Autofocus finished
17-03-18 05:48:11.414 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:48:11.414 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:48:11.414 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133210321567508. ----------
17-03-18 05:48:11.414 -07 000000610 INF: Cycle	141	Tile	18	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:48:11.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27759, sync = True, waitForSettling = True)
17-03-18 05:48:11.424 -07 000000610 INF: Z Motor: Moving to -0.127073 mm, started at -0.133210 mm, distance = 6.14 um
17-03-18 05:48:11.424 -07 000000610 INF: FPGA: Xmit ZDACW 27759\n [Z Motor]
17-03-18 05:48:11.424 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:48:11.434 -07 000000610 INF: FPGA: 'ZDACW 27759' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:48:11.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:11.434 -07 000000606 INF: FPGA: Recv ZDACR 27759
17-03-18 05:48:11.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:48:11.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29067
17-03-18 05:48:11.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:11.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.604 -07 000000625 INF: FPGA: Recv ZSGSRD 29071
17-03-18 05:48:11.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.614 -07 000000461 INF: FPGA: Recv ZSGSRD 29072
17-03-18 05:48:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.624 -07 000000012 INF: FPGA: Recv ZSGSRD 29070
17-03-18 05:48:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.634 -07 000000012 INF: FPGA: Recv ZSGSRD 29065
17-03-18 05:48:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.644 -07 000000625 INF: FPGA: Recv ZSGSRD 29070
17-03-18 05:48:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29074
17-03-18 05:48:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.664 -07 000000012 INF: FPGA: Recv ZSGSRD 29069
17-03-18 05:48:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.674 -07 000000479 INF: FPGA: Recv ZSGSRD 29072
17-03-18 05:48:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:11.684 -07 000000591 INF: FPGA: Recv ZSGSRD 29071
17-03-18 05:48:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:11.694 -07 000000012 INF: FPGA: Recv ZPIEZORD 24525
17-03-18 05:48:11.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:11.704 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.236 V. Piezo Error = -10.0 V.
17-03-18 05:48:11.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29070 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29070 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29065 (-126.3 uncal um), Max = 29074 (-126.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:48:11.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29070, posNoise = 4, negNoise = 5
17-03-18 05:48:11.704 -07 000000610 INF: Z Motor: After move to -0.127073, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:11.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:48:11.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:11.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:11.704 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:48:11.704 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:11.704 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:11.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:11.704 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:48:11.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:48:11.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:11.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:48:11.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:48:11.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:48:11.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:48:11.714 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:48:11.714 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:48:11.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:48:11.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:48:11.724 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:48:11.724 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:48:11.724 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:48:11.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 27936 150\n [Camera]
17-03-18 05:48:11.794 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:11.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:11.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:48:12.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:48:12.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:48:12.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:12.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:48:12.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:48:12.384 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:12.384 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:48:12.384 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:12.384 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:12.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:48:12.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27936 830
17-03-18 05:48:12.714 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:48:12.764 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:48:12.764 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:48:12.764 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:12.764 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:48:12.764 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:48:12.764 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:12.764 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:12.764 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:48:12.774 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:12.774 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:48:12.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:48:12.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:48:12.934 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:12.934 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:48:12.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:48:12.934 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:12.934 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:12.934 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:48:12.934 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:12.934 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 05:48:13.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:48:13.124 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:48:13.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 27936 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:48:13.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:48:13.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.127075198972126. ------
17-03-18 05:48:13.124 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:13.124 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13348 mm
17-03-18 05:48:13.124 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:48:13.134 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:13.134 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:48:13.134 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:48:13.134 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29160, sync = True, waitForSettling = False)
17-03-18 05:48:13.134 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:48:13.134 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:48:13.134 -07 000000487 INF: Z Motor: Moving to -0.133486 mm, started at -0.127075 mm, distance = -6.41 um
17-03-18 05:48:13.144 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:13.144 -07 000000012 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:48:13.154 -07 000000487 INF: FPGA: Xmit ZDACW 29160\n [Z Motor]
17-03-18 05:48:13.154 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:48:13.154 -07 000000444 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:13.154 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:48:13.154 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:48:13.154 -07 000000444 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:48:13.164 -07 000000487 INF: FPGA: 'ZDACW 29160' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:48:13.164 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:13.164 -07 000000625 INF: FPGA: Recv ZDACR 29160
17-03-18 05:48:13.174 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:13.174 -07 000000487 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:48:13.174 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:48:13.334 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:48:13.334 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:48:13.334 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:13.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:48:13.334 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:48:13.334 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:13.334 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:48:13.334 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:13.334 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:48:13.334 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:13.334 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:48:13.344 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:48:13.554 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 05:48:13.554 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 05:48:13.584 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:13.584 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:48:13.594 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:48:13.594 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:13.594 -07 000000444 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:48:13.594 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.136 mm/sec
17-03-18 05:48:13.674 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.994908,
17-03-18 05:48:14.544 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:14.544 -07 000000424 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:48:14.554 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:14.554 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:14.574 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:48:14.574 -07 000000444 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:48:14.574 -07 000000444 INF: Y Motor: Moved to 74.8306 after 1439 ms (table move)
17-03-18 05:48:14.574 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133486 mm (DAC = 29160)
17-03-18 05:48:14.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.574 -07 000000444 INF: FPGA: Recv ZSGSRD 30071
17-03-18 05:48:14.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:48:14.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.584 -07 000000444 INF: FPGA: Recv ZSGSRD 30068
17-03-18 05:48:14.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.594 -07 000000462 INF: FPGA: Recv ZSGSRD 30060
17-03-18 05:48:14.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.604 -07 000000625 INF: FPGA: Recv ZSGSRD 30069
17-03-18 05:48:14.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.614 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.614 -07 000000625 INF: FPGA: Recv ZSGSRD 30075
17-03-18 05:48:14.624 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.624 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.624 -07 000000625 INF: FPGA: Recv ZSGSRD 30070
17-03-18 05:48:14.634 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.634 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.634 -07 000000625 INF: FPGA: Recv ZSGSRD 30067
17-03-18 05:48:14.644 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.644 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.644 -07 000000625 INF: FPGA: Recv ZSGSRD 30068
17-03-18 05:48:14.654 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.654 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.654 -07 000000625 INF: FPGA: Recv ZSGSRD 30070
17-03-18 05:48:14.664 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.664 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:14.664 -07 000000625 INF: FPGA: Recv ZSGSRD 30067
17-03-18 05:48:14.674 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.674 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:14.674 -07 000000461 INF: FPGA: Recv ZPIEZORD 25892
17-03-18 05:48:14.684 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.2 V.
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30068 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30068 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30060 (-132.6 uncal um), Max = 30075 (-132.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30068, posNoise = 7, negNoise = 8
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: After move to -0.133486, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-18 05:48:14.684 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:48:14.734 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 05:48:14.734 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:48:14.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:14.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:14.734 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:14.734 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:48:14.734 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:14.734 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:14.734 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:48:14.734 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:48:14.744 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:48:14.744 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:48:14.744 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:48:14.744 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:48:14.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:48:14.794 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:48:15.094 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:48:15.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:48:15.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:48:15.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:48:15.134 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:48:15.134 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:48:15.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:48:15.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:48:15.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:15.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:48:15.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:48:15.234 -07 000000462 INF: Autofocus start
17-03-18 05:48:15.234 -07 000000462 INF: MeasureProfile start
17-03-18 05:48:15.234 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:48:15.234 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:48:15.244 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:48:15.244 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:48:15.254 -07 000000462 INF: MeasureProfile done
17-03-18 05:48:15.254 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:48:15.254 -07 000000462 INF: Autofocus finished
17-03-18 05:48:15.444 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:48:15.444 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:48:15.454 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133486562689603. ----------
17-03-18 05:48:15.454 -07 000000610 INF: Cycle	141	Tile	19	Exposure Settings		A	445	G	214	T	214	C	445
17-03-18 05:48:15.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27667, sync = True, waitForSettling = True)
17-03-18 05:48:15.454 -07 000000610 INF: Z Motor: Moving to -0.126651 mm, started at -0.133487 mm, distance = 6.84 um
17-03-18 05:48:15.454 -07 000000610 INF: FPGA: Xmit ZDACW 27667\n [Z Motor]
17-03-18 05:48:15.454 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:48:15.464 -07 000000610 INF: FPGA: 'ZDACW 27667' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:48:15.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:48:15.464 -07 000000444 INF: FPGA: Recv ZDACR 27667
17-03-18 05:48:15.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:48:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29006
17-03-18 05:48:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29005
17-03-18 05:48:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.644 -07 000000501 INF: FPGA: Recv ZSGSRD 29003
17-03-18 05:48:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.654 -07 000000461 INF: FPGA: Recv ZSGSRD 29006
17-03-18 05:48:15.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.664 -07 000000462 INF: FPGA: Recv ZSGSRD 29009
17-03-18 05:48:15.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.674 -07 000000461 INF: FPGA: Recv ZSGSRD 29003
17-03-18 05:48:15.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.684 -07 000000438 INF: FPGA: Recv ZSGSRD 29009
17-03-18 05:48:15.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.694 -07 000000608 INF: FPGA: Recv ZSGSRD 29005
17-03-18 05:48:15.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.704 -07 000000462 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:48:15.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:48:15.714 -07 000000424 INF: FPGA: Recv ZSGSRD 29010
17-03-18 05:48:15.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:48:15.724 -07 000000438 INF: FPGA: Recv ZPIEZORD 24469
17-03-18 05:48:15.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:15.734 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.222 V. Piezo Error = -9.9 V.
17-03-18 05:48:15.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29006 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29006 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29000 (-125.9 uncal um), Max = 29010 (-125.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:48:15.734 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29006, posNoise = 4, negNoise = 6
17-03-18 05:48:15.734 -07 000000610 INF: Z Motor: After move to -0.126651, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:48:15.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:48:15.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:48:15.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:48:15.734 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:48:15.734 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:48:15.734 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:48:15.734 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:48:15.734 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:48:15.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:48:15.734 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:48:15.734 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:48:15.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:48:15.734 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:48:15.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:48:15.744 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:48:15.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:48:15.744 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:48:15.754 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:48:15.754 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:48:15.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:48:15.754 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:48:15.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 27844 150\n [Camera]
17-03-18 05:48:15.954 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:48:16.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 638
17-03-18 05:48:16.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 638
17-03-18 05:48:16.394 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:16.404 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:16.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:48:16.404 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 638
17-03-18 05:48:16.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 638
17-03-18 05:48:16.404 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:16.404 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:16.404 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:48:16.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27844 830
17-03-18 05:48:16.744 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:48:16.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:48:16.774 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:48:16.774 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:48:16.774 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:16.774 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:48:16.774 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:16.784 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:16.784 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:48:16.784 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:48:16.794 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:48:16.794 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:16.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 140. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:16.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-18 05:48:16.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-18 05:48:16.954 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:48:16.954 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:48:16.954 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:48:16.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-18 05:48:16.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-18 05:48:16.954 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:48:16.954 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:48:16.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:48:17.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:48:17.144 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:48:17.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 27844 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-18 05:48:17.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:48:17.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:48:17.364 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:17.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:48:17.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:48:17.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:48:17.364 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:48:17.364 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:48:17.364 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:48:17.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:48:17.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:48:17.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 134 ms.
17-03-18 05:48:17.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:48:17.544 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:48:17.554 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 05:48:17.554 -07 000000610 INF: Imaging Cycle 141: ScanTilesCommand Cycle 141 time end. Duration was 167046 ms.
17-03-18 05:48:17.554 -07 000000610 INF: =================== Cycle #141 ===================
17-03-18 05:48:17.554 -07 000000610 INF: ===================  ===================
17-03-18 05:48:17.554 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:48:17.564 -07 000000625 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 05:48:17.564 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:48:17.564 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 05:48:17.564 -07 000000461 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 141, FrontChillerTemperature: 3.994908, FrontChillerHeatSinkTemperature: 0.527405, AmbientTemperature: 18.76236, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.512, GreenLEDSensorTemperature: 27.06955, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 05:48:17.674 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.