17-03-18 05:48:17.724 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:17.734 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:48:17.734 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 05:48:17.734 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:17.734 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:48:17.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:17.744 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:17.744 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:48:17.744 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:48:17.744 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:48:17.854 -07 000000461 INF: FPGA: Recv YMVTO 154378 873
17-03-18 05:48:17.864 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 115 ms overall
17-03-18 05:48:17.864 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:48:17.864 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 873 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:48:17.864 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 05:48:19.034 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.020806,
17-03-18 05:48:20.864 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:48:20.864 -07 000000501 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:48:20.874 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:48:20.874 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:48:20.894 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:48:20.894 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:48:20.894 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3166 ms
17-03-18 05:48:20.904 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 60° ===================
17-03-18 05:48:20.904 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:48:20.904 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:48:20.904 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:48:20.914 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:48:20.914 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:48:20.914 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 05:48:20.924 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:48:20.924 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 60° ===================
17-03-18 05:48:20.924 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:20.924 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:48:20.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:20.954 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:48:20.954 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:48:20.954 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:48:21.254 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:48:21.274 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:48:21.274 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:48:21.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:21.344 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:48:21.344 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:48:21.444 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:21.444 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:48:21.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:21.474 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:48:21.474 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:48:21.474 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:48:21.604 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:48:21.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:21.794 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:24.394 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.020806,
17-03-18 05:48:24.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:24.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:25.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:25.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:25.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:25.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:25.704 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:48:25.704 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:25.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:25.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:48:25.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:48:25.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:26.024 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:48:26.024 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:48:26.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:48:26.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:48:26.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:26.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:26.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:26.644 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:48:26.644 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:26.794 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:27.864 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:48:27.864 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:48:27.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:27.884 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:48:27.884 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:48:27.884 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:48:28.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:48:28.034 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:48:28.034 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:48:28.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:28.104 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:48:28.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:48:28.204 -07 000000610 INF: =================== Cycle #142, Pumping Reagent CMS (4) ===================
17-03-18 05:48:28.204 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:48:28.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:28.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:48:28.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:48:28.234 -07 000000610 INF: =================== Cycle #142, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:48:28.364 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:48:28.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:29.754 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.008536,
17-03-18 05:48:29.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:29.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:30.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:30.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:30.324 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:48:30.324 -07 000000610 INF: =================== Cycle #142, Pumping Reagent CMS (4) ===================
17-03-18 05:48:30.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:30.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:48:30.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:48:30.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:30.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:48:30.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:48:30.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:48:30.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:48:30.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:31.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:31.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:31.264 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:48:31.264 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:31.794 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:32.484 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:48:32.484 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:48:32.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:32.504 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:48:32.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:48:32.504 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:48:32.654 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:48:32.674 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:48:32.674 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:48:32.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:32.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:48:32.744 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:48:32.844 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:32.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:48:32.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:32.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:48:32.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:48:32.874 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:48:33.004 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:48:33.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:33.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:33.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:33.944 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:48:33.944 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:34.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:34.104 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:48:34.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:48:34.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:34.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:48:34.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:48:34.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:48:34.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:48:34.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:34.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:34.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:34.884 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:48:34.884 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:34.884 -07 000000626 INF: WaitCommand(10000) start
17-03-18 05:48:34.884 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:48:34.884 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:48:35.114 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.000345,
17-03-18 05:48:36.104 -07 000000438 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:48:36.104 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-18 05:48:36.134 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:48:36.134 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:48:36.264 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:48:36.304 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:36.804 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:36.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:37.834 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:37.864 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:38.284 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:38.314 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:38.314 -07 000000438 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:48:38.314 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:48:38.314 -07 000000438 INF: ===================  ===================
17-03-18 05:48:40.474 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.014009,
17-03-18 05:48:41.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:44.894 -07 000000626 INF: WaitCommand(10000) end
17-03-18 05:48:44.894 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:44.894 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:48:44.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:44.924 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:48:44.924 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:48:44.924 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:48:45.054 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:48:45.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:45.834 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.009895,
17-03-18 05:48:46.804 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:48:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1892, R2=1969, Total=3861. Warn if over 250 bubbles per interval.
17-03-18 05:48:51.194 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.012614,
17-03-18 05:48:51.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:51.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:51.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:51.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:51.804 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 05:48:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1893, R2=1971, Total=3864. Warn if over 250 bubbles per interval.
17-03-18 05:48:52.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:52.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:52.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:52.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:53.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:53.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:53.054 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:48:53.054 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:48:53.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:53.214 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:48:53.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:48:53.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:53.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:48:53.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:48:53.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:48:53.504 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:48:53.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:53.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:53.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:53.994 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:48:53.994 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:55.214 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:48:55.214 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:48:55.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:55.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:48:55.234 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:48:55.234 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:48:55.444 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:48:55.464 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:48:55.464 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:48:55.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:55.534 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:48:55.534 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:48:55.634 -07 000000610 INF: =================== Cycle #142, Pumping Reagent IMT (1) ===================
17-03-18 05:48:55.634 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:48:55.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:55.664 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:48:55.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:48:55.664 -07 000000610 INF: =================== Cycle #142, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:48:55.794 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:48:55.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:56.554 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.009895,
17-03-18 05:48:56.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:48:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:48:57.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:57.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:48:57.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:57.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:57.754 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:48:57.754 -07 000000610 INF: =================== Cycle #142, Pumping Reagent IMT (1) ===================
17-03-18 05:48:57.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:57.914 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:48:57.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:48:58.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:48:58.074 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:48:58.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:48:58.074 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:48:58.204 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:48:58.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:58.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:48:58.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:48:58.694 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:48:58.694 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:48:59.914 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:48:59.914 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:48:59.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:48:59.934 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:48:59.934 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:48:59.934 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:49:00.164 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:49:00.184 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:49:00.184 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:49:00.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:49:00.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:49:00.254 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:49:00.354 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:49:00.354 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:49:00.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:00.394 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:49:00.394 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:49:00.394 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:49:00.524 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:49:00.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:49:01.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:01.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:01.464 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:49:01.464 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:49:01.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:01.624 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:49:01.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:49:01.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:01.784 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:49:01.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:49:01.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:49:01.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:01.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:49:01.914 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.016692,
17-03-18 05:49:01.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:02.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:02.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:02.404 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:49:02.404 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:49:02.404 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 65° ===================
17-03-18 05:49:02.404 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:49:02.404 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:49:02.404 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:49:02.414 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:49:02.414 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:49:02.414 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 05:49:02.424 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:49:02.424 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 65° ===================
17-03-18 05:49:02.424 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:49:02.424 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:49:06.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:07.274 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.011254,
17-03-18 05:49:11.804 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:12.634 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.986717,
17-03-18 05:49:16.804 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:16.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:17.994 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.975845,
17-03-18 05:49:21.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:23.354 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.989471,
17-03-18 05:49:26.804 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:28.714 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.019446,
17-03-18 05:49:31.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:32.434 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:49:32.434 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:49:32.434 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:49:32.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:32.564 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:49:32.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:49:32.564 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:49:32.694 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:49:32.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:49:33.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:33.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:33.304 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:49:33.304 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:49:33.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:33.464 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:49:33.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:49:33.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:49:33.624 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:49:33.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:49:33.624 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:49:33.754 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:49:33.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:34.074 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.005817,
17-03-18 05:49:34.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:34.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:34.244 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:49:34.244 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:49:34.244 -07 000000606 INF: WaitCommand(30000) start
17-03-18 05:49:34.244 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:49:34.244 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:49:35.464 -07 000000626 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:49:35.464 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 05:49:35.494 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:49:35.494 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:49:35.624 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:49:35.664 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:49:36.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:36.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:38.004 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:38.034 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:49:38.454 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 05:49:38.484 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:49:38.484 -07 000000626 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:49:38.484 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:49:38.484 -07 000000626 INF: ===================  ===================
17-03-18 05:49:39.434 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.977204,
17-03-18 05:49:41.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:45.044 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.977204,
17-03-18 05:49:46.804 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:50.414 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.004458,
17-03-18 05:49:51.804 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:49:55.784 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.974486,
17-03-18 05:49:56.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:49:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:50:01.154 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.988112,
17-03-18 05:50:01.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1894, R2=1971, Total=3865. Warn if over 250 bubbles per interval.
17-03-18 05:50:04.254 -07 000000606 INF: WaitCommand(30000) end
17-03-18 05:50:04.254 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 22° ===================
17-03-18 05:50:04.254 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:50:04.254 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:50:04.264 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:50:04.264 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:04.264 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:50:04.264 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 05:50:04.274 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:50:04.274 -07 000000610 INF: =================== Cycle #142, Flow Cell Temp 22° ===================
17-03-18 05:50:04.274 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:50:04.274 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:50:04.274 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:50:04.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:04.314 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:50:04.314 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:50:04.314 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:50:04.444 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:50:04.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:06.534 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.018051,
17-03-18 05:50:06.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:50:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1895, R2=1972, Total=3867. Warn if over 250 bubbles per interval.
17-03-18 05:50:07.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:07.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:08.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:08.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:08.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:08.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:08.544 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:50:08.544 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:50:08.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:08.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:50:08.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:50:08.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:08.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:50:08.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:50:08.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:50:08.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:50:09.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:09.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:09.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:09.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:50:09.484 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:50:10.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:50:10.704 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:50:10.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:10.724 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:50:10.724 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:50:10.724 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:50:10.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:50:10.894 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:50:10.894 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:50:10.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:10.964 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:50:10.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:50:11.064 -07 000000610 INF: =================== Cycle #142, Pumping Reagent USM (2) ===================
17-03-18 05:50:11.064 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:50:11.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:11.094 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:50:11.094 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:50:11.094 -07 000000610 INF: =================== Cycle #142, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:50:11.224 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:50:11.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:11.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-18 05:50:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1900, R2=1975, Total=3875. Warn if over 250 bubbles per interval.
17-03-18 05:50:11.894 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.019446,
17-03-18 05:50:12.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:12.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:13.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:13.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:13.184 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:50:13.184 -07 000000610 INF: =================== Cycle #142, Pumping Reagent USM (2) ===================
17-03-18 05:50:13.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:13.344 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:50:13.344 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:50:13.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:13.504 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:50:13.504 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:50:13.504 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:50:13.634 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:50:13.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:14.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:14.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:14.124 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:50:14.124 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:50:15.344 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:50:15.344 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:50:15.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:15.364 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:50:15.364 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:50:15.364 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:50:15.514 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:50:15.534 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:50:15.534 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:50:15.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:15.604 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:50:15.604 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:50:15.704 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:50:15.704 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:50:15.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:15.734 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:50:15.734 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:50:15.734 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:50:15.864 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:50:15.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:16.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:16.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:16.804 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:50:16.804 -07 000000610 INF: =================== Cycle #142, Pumping Reagent PR2 (3) ===================
17-03-18 05:50:16.804 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:16.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1900, R2=1975, Total=3875. Warn if over 250 bubbles per interval.
17-03-18 05:50:16.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:16.964 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:50:16.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:50:17.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:50:17.124 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:50:17.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:50:17.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:50:17.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:50:17.274 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.999021,
17-03-18 05:50:17.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:17.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:17.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:17.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:50:17.744 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:50:17.744 -07 000000626 INF: WaitCommand(10000) start
17-03-18 05:50:17.744 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:50:17.744 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:50:18.964 -07 000000462 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:50:18.964 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 05:50:18.994 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:50:18.994 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:50:19.124 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:50:19.164 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:20.694 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:20.724 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:50:21.144 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 05:50:21.614 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:50:21.614 -07 000000462 INF: LanePump: Waited 2449 ms for pump motion to complete
17-03-18 05:50:21.614 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:50:21.614 -07 000000462 INF: ===================  ===================
17-03-18 05:50:21.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:50:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1975, Total=3876. Warn if over 250 bubbles per interval.
17-03-18 05:50:22.634 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.994908,
17-03-18 05:50:26.804 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1975, Total=3876. Warn if over 250 bubbles per interval.
17-03-18 05:50:27.754 -07 000000626 INF: WaitCommand(10000) end
17-03-18 05:50:27.754 -07 000000610 INF: =================== Cycle #142, Imaging ===================
17-03-18 05:50:27.754 -07 000000610 INF: Imaging Cycle 142: ScanTilesCommand Cycle 142 time start.
17-03-18 05:50:27.754 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:50:27.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:27.784 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:50:27.784 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:50:27.784 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:50:28.004 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.012614,
17-03-18 05:50:28.084 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:50:28.104 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:50:28.104 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:50:28.154 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:50:28.174 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:50:28.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:28.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:28.174 -07 000000626 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:50:28.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:28.174 -07 000000626 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:50:28.174 -07 000000629 INF: FPGA: Recv EXLED1ON 
17-03-18 05:50:28.184 -07 000000626 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:50:28.184 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:50:28.184 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23160
17-03-18 05:50:28.194 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:28.194 -07 000000626 INF: RedLED: Using Red data: Photodiode ADC 23160 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 05:50:28.194 -07 000000626 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:50:28.194 -07 000000629 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:50:28.204 -07 000000626 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:28.204 -07 000000626 INF: RedLED: LED was on for 19 ms
17-03-18 05:50:28.204 -07 000000626 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:50:28.204 -07 000000626 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:50:28.204 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:28.204 -07 000000626 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:50:28.204 -07 000000438 INF: FPGA: Recv EXLED2ON 
17-03-18 05:50:28.214 -07 000000626 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:50:28.214 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:50:28.214 -07 000000462 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 05:50:28.224 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:28.224 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 05:50:28.224 -07 000000626 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:50:28.224 -07 000000462 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:50:28.234 -07 000000626 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:28.234 -07 000000626 INF: GreenLED: LED was on for 19 ms
17-03-18 05:50:28.234 -07 000000626 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:50:28.234 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:50:28.234 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 05:50:28.244 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:50:28.244 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:50:28.744 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 05:50:28.744 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:50:28.744 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:50:28.744 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-18 05:50:28.754 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:28.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:28.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126664049395053. ------
17-03-18 05:50:28.754 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:28.754 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17844 mm
17-03-18 05:50:28.754 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:28.754 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:50:28.754 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 05:50:28.754 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:28.754 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38980, sync = True, waitForSettling = False)
17-03-18 05:50:28.754 -07 000000606 INF: Z Motor: Moving to -0.178439 mm, started at -0.126664 mm, distance = -51.77 um
17-03-18 05:50:28.764 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:50:28.764 -07 000000606 INF: FPGA: Xmit ZDACW 38980\n [Z Motor]
17-03-18 05:50:28.764 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:50:28.774 -07 000000606 INF: FPGA: 'ZDACW 38980' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:28.774 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:28.774 -07 000000502 INF: FPGA: Recv ZDACR 38980
17-03-18 05:50:28.784 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:28.784 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:28.784 -07 000000606 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 05:50:28.784 -07 000000590 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:50:28.794 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:50:28.794 -07 000000438 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:28.794 -07 000000438 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:50:28.794 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:50:28.794 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:28.804 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:50:28.994 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:28.994 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 235 ms overall
17-03-18 05:50:30.484 -07 000000437 INF: FPGA: Recv YMVTO 122702 24776
17-03-18 05:50:30.484 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 05:50:30.484 -07 000000438 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:50:30.484 -07 000000438 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:50:30.484 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.467 mm, average velocity = 9.125 mm/sec
17-03-18 05:50:31.804 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:50:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:33.334 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:33.334 -07 000000569 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:50:33.344 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:33.344 -07 000000438 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:33.374 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.016692,
17-03-18 05:50:33.374 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:33.374 -07 000000438 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 05:50:33.374 -07 000000438 INF: Y Motor: Moved to 59.9097 after 4615 ms
17-03-18 05:50:33.374 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178439 mm (DAC = 38980)
17-03-18 05:50:33.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.394 -07 000000437 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:50:33.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:50:33.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.424 -07 000000626 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:50:33.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:50:33.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.434 -07 000000447 INF: FPGA: Recv ZSGSRD 37062
17-03-18 05:50:33.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.444 -07 000000447 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:50:33.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.454 -07 000000447 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:50:33.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.464 -07 000000447 INF: FPGA: Recv ZSGSRD 37070
17-03-18 05:50:33.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.474 -07 000000502 INF: FPGA: Recv ZSGSRD 37060
17-03-18 05:50:33.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.484 -07 000000447 INF: FPGA: Recv ZSGSRD 37074
17-03-18 05:50:33.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.494 -07 000000447 INF: FPGA: Recv ZSGSRD 37072
17-03-18 05:50:33.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:33.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:33.504 -07 000000502 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:50:33.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.514 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:33.514 -07 000000502 INF: FPGA: Recv ZPIEZORD 33313
17-03-18 05:50:33.524 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.3 V.
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37067 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37066 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37060 (-177.5 uncal um), Max = 37074 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37067, posNoise = 7, negNoise = 7
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: After move to -0.178439, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: Settle wait time = 4618 ms, measure time = 143 ms (allowed 150 ms), total time = 4761 ms
17-03-18 05:50:33.524 -07 000000462 INF: Z Motor: Waiting extra 7 ms after reading position to reach expected total of 150 ms
17-03-18 05:50:33.534 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 05:50:33.534 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:33.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:33.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:33.534 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:33.534 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:33.534 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:33.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:33.544 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:33.544 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:50:33.564 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:50:33.564 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:33.564 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:50:33.564 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:33.584 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:50:33.584 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 05:50:33.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:33.634 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:33.924 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:33.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:33.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:33.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575181072, 0x0, 559484976) start.
17-03-18 05:50:33.964 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:33.974 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:33.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 05:50:34.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575181072, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:50:34.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:34.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:34.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:50:34.074 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:34.074 -07 000000462 INF: Image SNR check: start
17-03-18 05:50:34.074 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:34.084 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:34.084 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:34.084 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=123.41]
17-03-18 05:50:34.084 -07 000000462 INF: Autofocus start
17-03-18 05:50:34.084 -07 000000462 INF: MeasureProfile start
17-03-18 05:50:34.104 -07 000000462 INF: MeasureProfile done
17-03-18 05:50:34.104 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:50:34.104 -07 000000462 INF: Autofocus finished
17-03-18 05:50:34.284 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:34.284 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:50:34.284 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178449623469788. ----------
17-03-18 05:50:34.284 -07 000000610 INF: Cycle	142	Tile	1	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:34.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37495, sync = True, waitForSettling = True)
17-03-18 05:50:34.294 -07 000000610 INF: Z Motor: Moving to -0.171641 mm, started at -0.178450 mm, distance = 6.81 um
17-03-18 05:50:34.294 -07 000000610 INF: FPGA: Xmit ZDACW 37495\n [Z Motor]
17-03-18 05:50:34.294 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:50:34.304 -07 000000610 INF: FPGA: 'ZDACW 37495' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:34.304 -07 000000447 INF: FPGA: Recv ZDACR 37495
17-03-18 05:50:34.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.464 -07 000000502 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:50:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36010
17-03-18 05:50:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.484 -07 000000447 INF: FPGA: Recv ZSGSRD 36006
17-03-18 05:50:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.494 -07 000000590 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:50:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.504 -07 000000447 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:50:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.514 -07 000000502 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:50:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.524 -07 000000447 INF: FPGA: Recv ZSGSRD 36010
17-03-18 05:50:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.534 -07 000000462 INF: FPGA: Recv ZSGSRD 36007
17-03-18 05:50:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.544 -07 000000462 INF: FPGA: Recv ZSGSRD 36010
17-03-18 05:50:34.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:34.554 -07 000000590 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:50:34.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:34.564 -07 000000462 INF: FPGA: Recv ZPIEZORD 31891
17-03-18 05:50:34.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:34.574 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -9.1 V.
17-03-18 05:50:34.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36009 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36004 (-170.7 uncal um), Max = 36014 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:50:34.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36009, posNoise = 5, negNoise = 5
17-03-18 05:50:34.574 -07 000000610 INF: Z Motor: After move to -0.171641, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:34.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:50:34.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:34.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:34.574 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:34.574 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:34.574 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:34.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:34.574 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:34.574 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:34.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:34.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:34.574 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:34.574 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:50:34.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:34.574 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:34.594 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:50:34.594 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:50:34.594 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:50:34.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:34.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:50:34.604 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:34.624 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:50:34.624 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 45 ms.
17-03-18 05:50:34.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37672 150\n [Camera]
17-03-18 05:50:34.824 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:35.264 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:50:35.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:50:35.274 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:35.274 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:50:35.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:50:35.274 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:35.274 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:35.274 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:50:35.284 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:35.284 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:50:35.464 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37672 832
17-03-18 05:50:35.614 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:35.674 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:50:35.674 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:50:35.674 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:35.674 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:35.674 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:50:35.674 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:50:35.674 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:50:35.674 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:35.684 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:35.684 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:50:35.824 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:50:35.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:50:35.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:35.834 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:50:35.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:50:35.834 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:35.954 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:35.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:50:35.954 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:35.954 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 589857152, 0x0, 418435064) start.
17-03-18 05:50:36.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:36.014 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:36.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37672 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-18 05:50:36.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:36.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171652807023805. ------
17-03-18 05:50:36.024 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:36.024 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17789 mm
17-03-18 05:50:36.024 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:36.024 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38860, sync = True, waitForSettling = False)
17-03-18 05:50:36.024 -07 000000590 INF: Z Motor: Moving to -0.177890 mm, started at -0.171653 mm, distance = -6.24 um
17-03-18 05:50:36.024 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:50:36.024 -07 000000606 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:50:36.024 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:36.034 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:50:36.034 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:36.034 -07 000000502 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:50:36.044 -07 000000590 INF: FPGA: Xmit ZDACW 38860\n [Z Motor]
17-03-18 05:50:36.044 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:50:36.044 -07 000000606 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:36.044 -07 000000606 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:36.044 -07 000000606 INF: Y Motor: Moving 1333 steps1
17-03-18 05:50:36.044 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:50:36.054 -07 000000590 INF: FPGA: 'ZDACW 38860' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:50:36.054 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:36.064 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:36.074 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:36.074 -07 000000502 INF: FPGA: Recv ZDACR 38860
17-03-18 05:50:36.084 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:50:36.084 -07 000000590 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:50:36.254 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:36.254 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:50:36.354 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:50:36.354 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:50:36.354 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:36.354 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 589857152, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:50:36.354 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:50:36.354 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:36.354 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:36.354 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 05:50:36.354 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:36.364 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 05:50:36.434 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:50:36.434 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:50:36.474 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:36.484 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:50:36.494 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:36.494 -07 000000606 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:36.494 -07 000000606 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:50:36.494 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 05:50:36.804 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:36.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:37.444 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:37.444 -07 000000590 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:50:37.454 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:37.454 -07 000000606 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:37.484 -07 000000606 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:37.484 -07 000000606 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:50:37.484 -07 000000606 INF: Y Motor: Moved to 60.7324 after 1456 ms (table move)
17-03-18 05:50:37.484 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177890 mm (DAC = 38860)
17-03-18 05:50:37.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:37.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36979
17-03-18 05:50:37.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:50:37.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:37.494 -07 000000437 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:50:37.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:50:37.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:37.504 -07 000000502 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:50:37.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:37.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.314 -07 000000438 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:50:38.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-18 05:50:38.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.314 -07 000000474 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:50:38.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.324 -07 000000438 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:50:38.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.334 -07 000000606 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:50:38.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.344 -07 000000474 INF: FPGA: Recv ZSGSRD 36980
17-03-18 05:50:38.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.354 -07 000000437 INF: FPGA: Recv ZSGSRD 36980
17-03-18 05:50:38.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.364 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:38.364 -07 000000474 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:50:38.374 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.374 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:38.374 -07 000000438 INF: FPGA: Recv ZPIEZORD 33217
17-03-18 05:50:38.384 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.3 V.
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36975 (-177.0 uncal um), Max = 36991 (-177.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 9, negNoise = 7
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: After move to -0.177890, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: Settle wait time = 1460 ms, measure time = 892 ms (allowed 150 ms), total time = 2352 ms
17-03-18 05:50:38.384 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 892 ms, longer than max expected time of 150 ms
17-03-18 05:50:38.384 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2356 ms
17-03-18 05:50:38.384 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:38.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:38.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:38.384 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:38.384 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:38.384 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:38.384 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:38.384 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:50:38.384 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:38.394 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:50:38.394 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:38.404 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:50:38.404 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:50:38.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:38.454 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:38.744 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:38.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:38.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:38.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) start.
17-03-18 05:50:38.784 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:38.794 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:38.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:50:38.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:50:38.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:38.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:38.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:50:38.894 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:38.894 -07 000000626 INF: Autofocus start
17-03-18 05:50:38.894 -07 000000626 INF: MeasureProfile start
17-03-18 05:50:38.894 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:38.904 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:38.904 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:38.904 -07 000000626 INF: MeasureProfile done
17-03-18 05:50:38.904 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:50:38.904 -07 000000626 INF: Autofocus finished
17-03-18 05:50:38.934 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.008536,
17-03-18 05:50:39.104 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:39.104 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:50:39.104 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177903565437739. ----------
17-03-18 05:50:39.104 -07 000000610 INF: Cycle	142	Tile	2	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:39.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37375, sync = True, waitForSettling = True)
17-03-18 05:50:39.114 -07 000000610 INF: Z Motor: Moving to -0.171092 mm, started at -0.177904 mm, distance = 6.81 um
17-03-18 05:50:39.114 -07 000000610 INF: FPGA: Xmit ZDACW 37375\n [Z Motor]
17-03-18 05:50:39.114 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:50:39.124 -07 000000610 INF: FPGA: 'ZDACW 37375' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:39.124 -07 000000606 INF: FPGA: Recv ZDACR 37375
17-03-18 05:50:39.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.284 -07 000000437 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:50:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:50:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.304 -07 000000474 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:50:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.314 -07 000000447 INF: FPGA: Recv ZSGSRD 35931
17-03-18 05:50:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.324 -07 000000462 INF: FPGA: Recv ZSGSRD 35929
17-03-18 05:50:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.334 -07 000000437 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:50:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.344 -07 000000474 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:50:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:50:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.364 -07 000000437 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:50:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:39.374 -07 000000474 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:50:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:39.384 -07 000000606 INF: FPGA: Recv ZPIEZORD 31782
17-03-18 05:50:39.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:39.394 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.1 V.
17-03-18 05:50:39.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35923 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35924 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:50:39.394 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35923, posNoise = 8, negNoise = 7
17-03-18 05:50:39.394 -07 000000610 INF: Z Motor: After move to -0.171092, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:39.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:50:39.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:39.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:39.394 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:39.394 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:39.394 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:39.394 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:39.394 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:39.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:39.394 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:39.394 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:39.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:39.394 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:39.394 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:50:39.394 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:39.404 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:39.404 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:39.414 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:50:39.414 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:50:39.414 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:50:39.414 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:50:39.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37552 150\n [Camera]
17-03-18 05:50:39.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:40.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:50:40.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:50:40.064 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:40.064 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:40.064 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:50:40.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:50:40.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:50:40.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:40.074 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:40.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:50:40.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37552 832
17-03-18 05:50:40.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:40.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:50:40.464 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:50:40.464 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:40.464 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:50:40.464 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:50:40.464 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:40.474 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:40.474 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:50:40.474 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:40.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:50:40.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:50:40.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:50:40.624 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:40.624 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:40.624 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:50:40.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:50:40.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:50:40.624 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:40.624 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:40.624 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:50:40.814 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:40.814 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:40.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37552 150' command took 2 ms to send, 1386 ms to get response, and 1397 ms overall
17-03-18 05:50:40.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:40.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171100324779614. ------
17-03-18 05:50:40.934 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:40.934 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17784 mm
17-03-18 05:50:40.934 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:40.934 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:40.934 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38848, sync = True, waitForSettling = False)
17-03-18 05:50:40.934 -07 000000502 INF: Z Motor: Moving to -0.177835 mm, started at -0.171100 mm, distance = -6.73 um
17-03-18 05:50:40.934 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:50:40.934 -07 000000474 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:50:40.944 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:40.944 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:50:40.944 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:50:40.954 -07 000000502 INF: FPGA: Xmit ZDACW 38848\n [Z Motor]
17-03-18 05:50:40.954 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:50:40.954 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:40.954 -07 000000474 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:40.954 -07 000000474 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:50:40.954 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:50:40.964 -07 000000502 INF: FPGA: 'ZDACW 38848' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:50:40.964 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:40.974 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:40.984 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:40.984 -07 000000569 INF: FPGA: Recv ZDACR 38848
17-03-18 05:50:40.994 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:50:40.994 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:50:41.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:50:41.024 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:50:41.024 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:41.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:50:41.024 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:50:41.024 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:41.024 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:41.024 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:50:41.024 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:41.034 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:50:41.164 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:41.164 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:50:41.344 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:50:41.344 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:50:41.394 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:41.404 -07 000000462 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:50:41.404 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:41.404 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:41.404 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:50:41.404 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:50:41.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:42.354 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:42.354 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:50:42.364 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:42.364 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:42.394 -07 000000474 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:42.404 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:50:42.404 -07 000000474 INF: Y Motor: Moved to 61.5630 after 1461 ms (table move)
17-03-18 05:50:42.404 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177835 mm (DAC = 38848)
17-03-18 05:50:42.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36976
17-03-18 05:50:42.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:42.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36980
17-03-18 05:50:42.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.424 -07 000000502 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:50:42.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.434 -07 000000590 INF: FPGA: Recv ZSGSRD 36979
17-03-18 05:50:42.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:50:42.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.444 -07 000000629 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:50:42.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.454 -07 000000626 INF: FPGA: Recv ZSGSRD 36963
17-03-18 05:50:42.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36978
17-03-18 05:50:42.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:50:42.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.484 -07 000000629 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:50:42.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:42.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36979
17-03-18 05:50:42.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.504 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:42.504 -07 000000629 INF: FPGA: Recv ZPIEZORD 33209
17-03-18 05:50:42.514 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.3 V.
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36974 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36963 (-176.9 uncal um), Max = 36980 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36974, posNoise = 6, negNoise = 11
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: After move to -0.177835, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:50:42.514 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:50:42.564 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:50:42.564 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:42.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:42.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:42.564 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:42.564 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:42.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:42.564 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:42.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:50:42.564 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:42.574 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:50:42.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:42.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:50:42.574 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:50:42.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:42.624 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:42.924 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:42.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:42.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:42.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575049944, 0x0, 559484976) start.
17-03-18 05:50:42.964 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:42.964 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:42.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:50:43.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575049944, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:50:43.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:43.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:43.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 05:50:43.064 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:43.064 -07 000000437 INF: Autofocus start
17-03-18 05:50:43.064 -07 000000437 INF: MeasureProfile start
17-03-18 05:50:43.064 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:43.074 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:43.074 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:43.074 -07 000000437 INF: MeasureProfile done
17-03-18 05:50:43.074 -07 000000437 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:50:43.074 -07 000000437 INF: Autofocus finished
17-03-18 05:50:43.274 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:43.274 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:50:43.274 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177852171740605. ----------
17-03-18 05:50:43.274 -07 000000610 INF: Cycle	142	Tile	3	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:43.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37363, sync = True, waitForSettling = True)
17-03-18 05:50:43.284 -07 000000610 INF: Z Motor: Moving to -0.171037 mm, started at -0.177852 mm, distance = 6.82 um
17-03-18 05:50:43.284 -07 000000610 INF: FPGA: Xmit ZDACW 37363\n [Z Motor]
17-03-18 05:50:43.284 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:50:43.294 -07 000000610 INF: FPGA: 'ZDACW 37363' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:50:43.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:43.294 -07 000000629 INF: FPGA: Recv ZDACR 37363
17-03-18 05:50:43.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.454 -07 000000629 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:50:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:50:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.474 -07 000000629 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:50:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.484 -07 000000629 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:50:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.494 -07 000000629 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:50:43.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.504 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:50:43.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.514 -07 000000437 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:50:43.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.524 -07 000000569 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:50:43.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.534 -07 000000629 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:50:43.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:43.544 -07 000000569 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:50:43.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:43.554 -07 000000569 INF: FPGA: Recv ZPIEZORD 31783
17-03-18 05:50:43.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:43.564 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 05:50:43.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35913 (-170.2 uncal um), Max = 35919 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:50:43.564 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 3, negNoise = 3
17-03-18 05:50:43.564 -07 000000610 INF: Z Motor: After move to -0.171037, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:43.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:50:43.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:43.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:43.564 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:43.564 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:43.564 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:43.564 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:43.564 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:50:43.564 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:43.564 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:43.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:43.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:43.564 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:43.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:43.574 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:43.574 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:50:43.574 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:43.584 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:50:43.584 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:50:43.584 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:50:43.584 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:50:43.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37540 150\n [Camera]
17-03-18 05:50:43.784 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:44.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:50:44.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:50:44.234 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:44.234 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:50:44.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:50:44.234 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:44.234 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:44.234 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594131328, 0x0, 391868352) start.
17-03-18 05:50:44.244 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:44.244 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:50:44.304 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.004458,
17-03-18 05:50:44.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 832
17-03-18 05:50:44.574 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:44.634 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594131328, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:50:44.634 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:50:44.634 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:44.634 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:44.634 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:50:44.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:50:44.634 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:50:44.634 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:44.634 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:44.644 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:50:44.794 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:50:44.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:50:44.794 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:44.794 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:50:44.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:50:44.794 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:44.794 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:44.794 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:50:44.804 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:44.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:50:44.984 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:44.984 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:44.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37540 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-18 05:50:44.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:44.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171055355294621. ------
17-03-18 05:50:44.984 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:44.984 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17725 mm
17-03-18 05:50:44.994 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:44.994 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:44.994 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:44.994 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:44.994 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:50:44.994 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:50:44.994 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38720, sync = True, waitForSettling = False)
17-03-18 05:50:44.994 -07 000000629 INF: Z Motor: Moving to -0.177249 mm, started at -0.171055 mm, distance = -6.19 um
17-03-18 05:50:45.004 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:45.004 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:50:45.014 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:50:45.014 -07 000000462 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:45.014 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:45.014 -07 000000462 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:50:45.014 -07 000000629 INF: FPGA: Xmit ZDACW 38720\n [Z Motor]
17-03-18 05:50:45.014 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:50:45.024 -07 000000629 INF: FPGA: 'ZDACW 38720' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:50:45.024 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:45.024 -07 000000461 INF: FPGA: Recv ZDACR 38720
17-03-18 05:50:45.034 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:45.034 -07 000000629 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:50:45.034 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:45.194 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:45.194 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:50:45.194 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:50:45.194 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:50:45.194 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:45.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:50:45.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:50:45.194 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:45.194 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:45.204 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:45.204 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:50:45.204 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:50:45.404 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:50:45.404 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:50:45.454 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:45.464 -07 000000437 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:50:45.464 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:45.464 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:45.464 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:50:45.464 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 05:50:46.414 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:46.414 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:50:46.424 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.424 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:46.454 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:46.454 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:50:46.454 -07 000000462 INF: Y Motor: Moved to 62.3950 after 1458 ms (table move)
17-03-18 05:50:46.454 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177249 mm (DAC = 38720)
17-03-18 05:50:46.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.454 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:50:46.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:50:46.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.464 -07 000000462 INF: FPGA: Recv ZSGSRD 36883
17-03-18 05:50:46.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.474 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.474 -07 000000462 INF: FPGA: Recv ZSGSRD 36878
17-03-18 05:50:46.484 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.484 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.484 -07 000000462 INF: FPGA: Recv ZSGSRD 36879
17-03-18 05:50:46.494 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.494 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.494 -07 000000424 INF: FPGA: Recv ZSGSRD 36873
17-03-18 05:50:46.504 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.504 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.504 -07 000000424 INF: FPGA: Recv ZSGSRD 36886
17-03-18 05:50:46.514 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.514 -07 000000438 INF: FPGA: Recv ZSGSRD 36877
17-03-18 05:50:46.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.524 -07 000000461 INF: FPGA: Recv ZSGSRD 36880
17-03-18 05:50:46.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.534 -07 000000462 INF: FPGA: Recv ZSGSRD 36892
17-03-18 05:50:46.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:46.544 -07 000000437 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:50:46.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:46.554 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:47.124 -07 000000424 INF: FPGA: Recv ZPIEZORD 33098
17-03-18 05:50:47.124 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:47.124 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 561 ms to get response, and 570 ms overall
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.4 V.
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36882 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36882 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36873 (-176.3 uncal um), Max = 36892 (-176.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36882, posNoise = 10, negNoise = 9
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: After move to -0.177249, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: Settle wait time = 1461 ms, measure time = 666 ms (allowed 150 ms), total time = 2127 ms
17-03-18 05:50:47.124 -07 000000590 INF: Z Motor: Warning: Actual position measuring time = 666 ms, longer than max expected time of 150 ms
17-03-18 05:50:47.124 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2133 ms
17-03-18 05:50:47.124 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:47.124 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:47.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:47.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:47.124 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:47.134 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:47.134 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:47.134 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:47.134 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:50:47.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:47.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:50:47.134 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:47.144 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:50:47.144 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:50:47.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:47.184 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:47.484 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:47.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:47.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:47.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) start.
17-03-18 05:50:47.524 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:47.524 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:47.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 05:50:47.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:50:47.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:47.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:47.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:50:47.624 -07 000000438 INF: Autofocus start
17-03-18 05:50:47.624 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:47.624 -07 000000438 INF: MeasureProfile start
17-03-18 05:50:47.624 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:47.634 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:50:47.634 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:47.634 -07 000000438 INF: MeasureProfile done
17-03-18 05:50:47.634 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:50:47.634 -07 000000438 INF: Autofocus finished
17-03-18 05:50:47.834 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:47.834 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:50:47.834 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177261144223563. ----------
17-03-18 05:50:47.834 -07 000000610 INF: Cycle	142	Tile	4	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:47.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37253, sync = True, waitForSettling = True)
17-03-18 05:50:47.844 -07 000000610 INF: Z Motor: Moving to -0.170533 mm, started at -0.177261 mm, distance = 6.73 um
17-03-18 05:50:47.844 -07 000000610 INF: FPGA: Xmit ZDACW 37253\n [Z Motor]
17-03-18 05:50:47.844 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:50:47.854 -07 000000610 INF: FPGA: 'ZDACW 37253' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:47.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:47.854 -07 000000462 INF: FPGA: Recv ZDACR 37253
17-03-18 05:50:47.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:47.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:48.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.014 -07 000000462 INF: FPGA: Recv ZSGSRD 35840
17-03-18 05:50:48.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:48.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.024 -07 000000462 INF: FPGA: Recv ZSGSRD 35838
17-03-18 05:50:48.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35840
17-03-18 05:50:48.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.044 -07 000000462 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:50:48.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.054 -07 000000462 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:50:48.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.064 -07 000000447 INF: FPGA: Recv ZSGSRD 35835
17-03-18 05:50:48.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:50:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35836
17-03-18 05:50:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.094 -07 000000462 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:50:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:48.104 -07 000000447 INF: FPGA: Recv ZSGSRD 35836
17-03-18 05:50:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:48.114 -07 000000629 INF: FPGA: Recv ZPIEZORD 31673
17-03-18 05:50:48.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:48.124 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-18 05:50:48.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35836 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35836 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:50:48.124 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35836, posNoise = 4, negNoise = 5
17-03-18 05:50:48.124 -07 000000610 INF: Z Motor: After move to -0.170533, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:48.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:50:48.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:48.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:48.124 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:48.124 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:48.124 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:48.124 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:48.124 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:48.124 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:48.124 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:48.124 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:48.124 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:48.124 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:48.134 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:50:48.134 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:48.134 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:48.134 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:48.144 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:50:48.144 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:50:48.144 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:50:48.144 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:50:48.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37429 150\n [Camera]
17-03-18 05:50:48.344 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:48.794 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:50:48.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:50:48.794 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:48.794 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:48.794 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:50:48.794 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:50:48.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:50:48.794 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:48.794 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:48.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:50:48.984 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37429 832
17-03-18 05:50:49.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:49.194 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:50:49.194 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:50:49.194 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:49.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:50:49.194 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:50:49.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:49.194 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:49.194 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:50:49.194 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:49.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:50:49.354 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1199
17-03-18 05:50:49.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1199
17-03-18 05:50:49.354 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:49.354 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:49.354 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:50:49.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1199
17-03-18 05:50:49.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1199
17-03-18 05:50:49.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:49.354 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:49.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:50:49.534 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:49.544 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:49.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37429 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:50:49.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:49.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170541418323281. ------
17-03-18 05:50:49.674 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.993549,
17-03-18 05:50:49.674 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17696 mm
17-03-18 05:50:49.674 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:49.674 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:50:49.674 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:50:49.674 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38657, sync = True, waitForSettling = False)
17-03-18 05:50:49.674 -07 000000629 INF: Z Motor: Moving to -0.176960 mm, started at -0.170541 mm, distance = -6.42 um
17-03-18 05:50:49.684 -07 000000629 INF: FPGA: Xmit ZDACW 38657\n [Z Motor]
17-03-18 05:50:49.684 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:50:49.694 -07 000000629 INF: FPGA: 'ZDACW 38657' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:50:49.694 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:49.694 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:49.704 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:50:49.704 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:49.704 -07 000000455 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:50:49.714 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 05:50:49.714 -07 000000590 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:49.714 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:49.714 -07 000000590 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:50:49.724 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:49.724 -07 000000424 INF: FPGA: Recv ZDACR 38657
17-03-18 05:50:49.734 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:49.734 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:50:49.734 -07 000000629 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:50:49.744 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:49.754 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:50:49.754 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:50:49.754 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:49.754 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:50:49.754 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:50:49.754 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:49.764 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:50:49.764 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:50:49.764 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:49.764 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:50:49.934 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:49.934 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:50:50.114 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:50:50.114 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:50:50.164 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:50.174 -07 000000438 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:50:50.174 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:50.174 -07 000000590 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:50.174 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:50:50.174 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.058 mm/sec
17-03-18 05:50:51.124 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:51.124 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:50:51.134 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:51.134 -07 000000590 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:51.164 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:51.164 -07 000000590 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:50:51.164 -07 000000590 INF: Y Motor: Moved to 63.2231 after 1485 ms (table move)
17-03-18 05:50:51.164 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176960 mm (DAC = 38657)
17-03-18 05:50:51.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.164 -07 000000455 INF: FPGA: Recv ZSGSRD 36836
17-03-18 05:50:51.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:50:51.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.174 -07 000000455 INF: FPGA: Recv ZSGSRD 36836
17-03-18 05:50:51.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.184 -07 000000502 INF: FPGA: Recv ZSGSRD 36842
17-03-18 05:50:51.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.194 -07 000000455 INF: FPGA: Recv ZSGSRD 36839
17-03-18 05:50:51.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.204 -07 000000438 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:50:51.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36833
17-03-18 05:50:51.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.224 -07 000000502 INF: FPGA: Recv ZSGSRD 36830
17-03-18 05:50:51.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:50:51.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.244 -07 000000590 INF: FPGA: Recv ZSGSRD 36837
17-03-18 05:50:51.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:51.254 -07 000000590 INF: FPGA: Recv ZSGSRD 36834
17-03-18 05:50:51.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.264 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:51.264 -07 000000590 INF: FPGA: Recv ZPIEZORD 33063
17-03-18 05:50:51.274 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.4 V.
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36836 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36830 (-176.0 uncal um), Max = 36842 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36836, posNoise = 6, negNoise = 6
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: After move to -0.176960, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: Settle wait time = 1487 ms, measure time = 105 ms (allowed 150 ms), total time = 1592 ms
17-03-18 05:50:51.274 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:50:51.324 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1646 ms
17-03-18 05:50:51.324 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:51.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:51.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:51.334 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:51.334 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:51.334 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:51.334 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:51.334 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:50:51.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:51.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:50:51.334 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:51.344 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:50:51.344 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:50:51.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:51.394 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:51.694 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:51.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:51.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:51.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:50:51.734 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:51.734 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:51.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 05:50:51.804 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:51.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:50:51.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:51.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:51.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:50:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:51.834 -07 000000502 INF: Autofocus start
17-03-18 05:50:51.834 -07 000000502 INF: MeasureProfile start
17-03-18 05:50:51.834 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:51.834 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:51.844 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:50:51.844 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:51.844 -07 000000502 INF: MeasureProfile done
17-03-18 05:50:51.844 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:50:51.844 -07 000000502 INF: Autofocus finished
17-03-18 05:50:52.044 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:52.044 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:50:52.044 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.176965630465042. ----------
17-03-18 05:50:52.044 -07 000000610 INF: Cycle	142	Tile	5	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:52.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37207, sync = True, waitForSettling = True)
17-03-18 05:50:52.054 -07 000000610 INF: Z Motor: Moving to -0.170323 mm, started at -0.176966 mm, distance = 6.64 um
17-03-18 05:50:52.054 -07 000000610 INF: FPGA: Xmit ZDACW 37207\n [Z Motor]
17-03-18 05:50:52.054 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:50:52.064 -07 000000610 INF: FPGA: 'ZDACW 37207' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:50:52.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:52.064 -07 000000474 INF: FPGA: Recv ZDACR 37207
17-03-18 05:50:52.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:52.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35807
17-03-18 05:50:52.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.234 -07 000000447 INF: FPGA: Recv ZSGSRD 35804
17-03-18 05:50:52.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.244 -07 000000438 INF: FPGA: Recv ZSGSRD 35807
17-03-18 05:50:52.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35800
17-03-18 05:50:52.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.264 -07 000000437 INF: FPGA: Recv ZSGSRD 35799
17-03-18 05:50:52.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.274 -07 000000424 INF: FPGA: Recv ZSGSRD 35813
17-03-18 05:50:52.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.284 -07 000000438 INF: FPGA: Recv ZSGSRD 35800
17-03-18 05:50:52.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.294 -07 000000437 INF: FPGA: Recv ZSGSRD 35802
17-03-18 05:50:52.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.304 -07 000000447 INF: FPGA: Recv ZSGSRD 35807
17-03-18 05:50:52.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:52.314 -07 000000424 INF: FPGA: Recv ZSGSRD 35802
17-03-18 05:50:52.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:52.324 -07 000000438 INF: FPGA: Recv ZPIEZORD 31675
17-03-18 05:50:52.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:52.334 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.1 V.
17-03-18 05:50:52.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35803 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35813 (-169.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:50:52.334 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 9, negNoise = 5
17-03-18 05:50:52.334 -07 000000610 INF: Z Motor: After move to -0.170323, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:52.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:50:52.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:52.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:52.334 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:52.334 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:52.334 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:52.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:52.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:52.334 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:52.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:52.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:52.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:52.334 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:52.344 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:50:52.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:52.344 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:52.344 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:52.354 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:50:52.354 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:50:52.354 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:50:52.354 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:50:52.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37384 150\n [Camera]
17-03-18 05:50:52.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:53.004 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 05:50:53.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 05:50:53.004 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:53.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 05:50:53.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 05:50:53.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:53.004 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:53.014 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:50:53.014 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:53.014 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:50:53.194 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37384 832
17-03-18 05:50:53.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:53.404 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:50:53.404 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:50:53.404 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:53.414 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:50:53.414 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:50:53.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:50:53.414 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:50:53.414 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:53.414 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:53.424 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:50:53.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:50:53.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:50:53.564 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:53.564 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:50:53.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:50:53.564 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:53.564 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:53.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:50:53.564 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:53.564 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-18 05:50:53.754 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:53.754 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:53.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37384 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:50:53.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:53.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.170335843534744. ------
17-03-18 05:50:53.754 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:53.754 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17671 mm
17-03-18 05:50:53.754 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:53.874 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:53.874 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 05:50:53.874 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:50:53.874 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:50:53.874 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:53.874 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38603, sync = True, waitForSettling = False)
17-03-18 05:50:53.874 -07 000000438 INF: Z Motor: Moving to -0.176713 mm, started at -0.170336 mm, distance = -6.38 um
17-03-18 05:50:53.874 -07 000000455 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:50:53.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:50:53.884 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:53.884 -07 000000424 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:53.884 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:53.884 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:50:53.894 -07 000000438 INF: FPGA: Xmit ZDACW 38603\n [Z Motor]
17-03-18 05:50:53.894 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:50:53.904 -07 000000438 INF: FPGA: 'ZDACW 38603' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:50:53.904 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:53.914 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:53.914 -07 000000455 INF: FPGA: Recv ZDACR 38603
17-03-18 05:50:53.924 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:50:53.924 -07 000000438 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:50:53.954 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:50:53.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:50:53.954 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:50:53.954 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:53.954 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:50:53.954 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:53.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:53.964 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:53.964 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:50:53.964 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:50:54.084 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:54.084 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-18 05:50:54.274 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:50:54.274 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:50:54.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:54.334 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:50:54.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:54.344 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:54.344 -07 000000424 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:50:54.344 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 05:50:55.094 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.974486,
17-03-18 05:50:55.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:55.294 -07 000000447 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:50:55.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:55.304 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:55.334 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:55.334 -07 000000424 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:50:55.334 -07 000000424 INF: Y Motor: Moved to 64.0562 after 1456 ms (table move)
17-03-18 05:50:55.334 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176713 mm (DAC = 38603)
17-03-18 05:50:55.334 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.334 -07 000000447 INF: FPGA: Recv ZSGSRD 36801
17-03-18 05:50:55.344 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:50:55.344 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:50:55.354 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.354 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.354 -07 000000438 INF: FPGA: Recv ZSGSRD 36794
17-03-18 05:50:55.364 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.364 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36793
17-03-18 05:50:55.374 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.374 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.374 -07 000000447 INF: FPGA: Recv ZSGSRD 36797
17-03-18 05:50:55.384 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.384 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.384 -07 000000455 INF: FPGA: Recv ZSGSRD 36796
17-03-18 05:50:55.394 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.394 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.394 -07 000000447 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:50:55.404 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.404 -07 000000424 INF: FPGA: Recv ZSGSRD 36795
17-03-18 05:50:55.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.414 -07 000000590 INF: FPGA: Recv ZSGSRD 36801
17-03-18 05:50:55.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:55.424 -07 000000462 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:50:55.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.434 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:55.434 -07 000000455 INF: FPGA: Recv ZPIEZORD 32998
17-03-18 05:50:55.444 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.4 V.
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36800 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36799 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36793 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36800, posNoise = 6, negNoise = 7
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: After move to -0.176713, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:50:55.444 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:50:55.494 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 05:50:55.494 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:55.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:55.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:55.494 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:55.494 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:55.494 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:55.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:55.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:50:55.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:55.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:50:55.504 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:55.504 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:50:55.504 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:50:55.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:55.554 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:55.854 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:55.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:55.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:55.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:50:55.894 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:50:55.894 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:55.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:50:55.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:50:55.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:55.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:50:55.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:50:55.994 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:55.994 -07 000000447 INF: Autofocus start
17-03-18 05:50:55.994 -07 000000447 INF: MeasureProfile start
17-03-18 05:50:55.994 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:56.004 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:50:56.004 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:50:56.004 -07 000000447 INF: MeasureProfile done
17-03-18 05:50:56.004 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:50:56.004 -07 000000447 INF: Autofocus finished
17-03-18 05:50:56.204 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:50:56.204 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:50:56.214 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176734358827938. ----------
17-03-18 05:50:56.214 -07 000000610 INF: Cycle	142	Tile	6	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:50:56.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37100, sync = True, waitForSettling = True)
17-03-18 05:50:56.214 -07 000000610 INF: Z Motor: Moving to -0.169833 mm, started at -0.176734 mm, distance = 6.90 um
17-03-18 05:50:56.214 -07 000000610 INF: FPGA: Xmit ZDACW 37100\n [Z Motor]
17-03-18 05:50:56.224 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:50:56.224 -07 000000610 INF: FPGA: 'ZDACW 37100' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:50:56.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:56.224 -07 000000462 INF: FPGA: Recv ZDACR 37100
17-03-18 05:50:56.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:50:56.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:50:56.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.384 -07 000000590 INF: FPGA: Recv ZSGSRD 35718
17-03-18 05:50:56.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:56.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.394 -07 000000462 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:50:56.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.404 -07 000000424 INF: FPGA: Recv ZSGSRD 35728
17-03-18 05:50:56.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35725
17-03-18 05:50:56.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.424 -07 000000462 INF: FPGA: Recv ZSGSRD 35725
17-03-18 05:50:56.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35730
17-03-18 05:50:56.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35727
17-03-18 05:50:56.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.454 -07 000000438 INF: FPGA: Recv ZSGSRD 35728
17-03-18 05:50:56.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.464 -07 000000590 INF: FPGA: Recv ZSGSRD 35722
17-03-18 05:50:56.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:56.474 -07 000000447 INF: FPGA: Recv ZSGSRD 35730
17-03-18 05:50:56.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:56.484 -07 000000438 INF: FPGA: Recv ZPIEZORD 31602
17-03-18 05:50:56.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:56.494 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.1 V.
17-03-18 05:50:56.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35726 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35718 (-168.9 uncal um), Max = 35731 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:50:56.494 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35726, posNoise = 5, negNoise = 8
17-03-18 05:50:56.494 -07 000000610 INF: Z Motor: After move to -0.169833, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:56.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 05:50:56.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:56.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:56.494 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:56.494 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:56.494 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:50:56.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:56.494 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:50:56.494 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:50:56.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:50:56.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:50:56.494 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:50:56.494 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:50:56.504 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:50:56.504 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:50:56.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:50:56.504 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:50:56.504 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:50:56.504 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:50:56.514 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:50:56.514 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:50:56.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37277 150\n [Camera]
17-03-18 05:50:56.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:50:56.804 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:50:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:50:57.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:50:57.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:50:57.164 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:57.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:50:57.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:50:57.164 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:57.164 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:57.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:50:57.174 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:57.174 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:50:57.354 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37277 833
17-03-18 05:50:57.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:50:57.544 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:50:57.544 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:50:57.544 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:57.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:50:57.544 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:50:57.544 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:57.554 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:57.554 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:50:57.554 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:50:57.554 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:50:57.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:50:57.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:50:57.714 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:50:57.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:50:57.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:50:57.724 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:50:57.724 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:50:57.724 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:50:57.724 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:50:57.724 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:50:57.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:50:57.904 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:50:57.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37277 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-18 05:50:57.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:50:57.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169834754987687. ------
17-03-18 05:50:57.914 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:50:57.914 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17622 mm
17-03-18 05:50:57.914 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:50:57.914 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38495, sync = True, waitForSettling = False)
17-03-18 05:50:57.914 -07 000000424 INF: Z Motor: Moving to -0.176219 mm, started at -0.169835 mm, distance = -6.38 um
17-03-18 05:50:57.914 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:50:57.914 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:50:57.924 -07 000000438 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:50:57.924 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:57.924 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:50:57.924 -07 000000629 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:50:57.934 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:57.934 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:50:57.934 -07 000000438 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:57.934 -07 000000438 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:50:57.934 -07 000000438 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:50:57.944 -07 000000424 INF: FPGA: Xmit ZDACW 38495\n [Z Motor]
17-03-18 05:50:57.944 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:50:57.954 -07 000000424 INF: FPGA: 'ZDACW 38495' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:50:57.954 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:50:57.964 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:50:57.964 -07 000000447 INF: FPGA: Recv ZDACR 38495
17-03-18 05:50:57.974 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:50:57.974 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:50:58.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:50:58.124 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:50:58.124 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:58.124 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:50:58.124 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:50:58.124 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:50:58.124 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:50:58.124 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:50:58.124 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:50:58.134 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:50:58.134 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:50:58.134 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 05:50:58.324 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:50:58.324 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:50:58.374 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:58.384 -07 000000590 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:50:58.384 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:50:58.384 -07 000000438 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:58.384 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:50:58.384 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 05:50:59.334 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:50:59.334 -07 000000455 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:50:59.344 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:50:59.344 -07 000000438 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:50:59.384 -07 000000438 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:50:59.384 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:50:59.384 -07 000000438 INF: Y Motor: Moved to 64.8784 after 1461 ms (table move)
17-03-18 05:50:59.384 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176219 mm (DAC = 38495)
17-03-18 05:50:59.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.384 -07 000000438 INF: FPGA: Recv ZSGSRD 36721
17-03-18 05:50:59.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:50:59.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.394 -07 000000438 INF: FPGA: Recv ZSGSRD 36726
17-03-18 05:50:59.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.404 -07 000000590 INF: FPGA: Recv ZSGSRD 36717
17-03-18 05:50:59.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.414 -07 000000502 INF: FPGA: Recv ZSGSRD 36721
17-03-18 05:50:59.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.424 -07 000000502 INF: FPGA: Recv ZSGSRD 36718
17-03-18 05:50:59.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.434 -07 000000590 INF: FPGA: Recv ZSGSRD 36717
17-03-18 05:50:59.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.444 -07 000000447 INF: FPGA: Recv ZSGSRD 36723
17-03-18 05:50:59.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.454 -07 000000447 INF: FPGA: Recv ZSGSRD 36719
17-03-18 05:50:59.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.464 -07 000000447 INF: FPGA: Recv ZSGSRD 36726
17-03-18 05:50:59.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:50:59.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36722
17-03-18 05:50:59.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.484 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:50:59.484 -07 000000590 INF: FPGA: Recv ZPIEZORD 32905
17-03-18 05:50:59.494 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.4 V.
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36721 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36721 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36717 (-175.3 uncal um), Max = 36726 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36721, posNoise = 5, negNoise = 4
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: After move to -0.176219, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:50:59.494 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:50:59.544 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:50:59.544 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:50:59.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:50:59.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:50:59.544 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:50:59.544 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:50:59.544 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:50:59.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:50:59.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:50:59.554 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:50:59.554 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:50:59.554 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:50:59.554 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:50:59.554 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:50:59.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:50:59.604 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:50:59.904 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:50:59.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:50:59.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:50:59.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-18 05:50:59.954 -07 000000462 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:50:59.954 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:50:59.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 05:51:00.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:51:00.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:00.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:51:00.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:51:00.054 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:00.054 -07 000000590 INF: Autofocus start
17-03-18 05:51:00.054 -07 000000590 INF: MeasureProfile start
17-03-18 05:51:00.054 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:00.064 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:00.064 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:00.074 -07 000000590 INF: MeasureProfile done
17-03-18 05:51:00.074 -07 000000590 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:51:00.074 -07 000000590 INF: Autofocus finished
17-03-18 05:51:00.264 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:00.264 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:00.264 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176226846068739. ----------
17-03-18 05:51:00.264 -07 000000610 INF: Cycle	142	Tile	7	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:00.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37046, sync = True, waitForSettling = True)
17-03-18 05:51:00.274 -07 000000610 INF: Z Motor: Moving to -0.169586 mm, started at -0.176227 mm, distance = 6.64 um
17-03-18 05:51:00.274 -07 000000610 INF: FPGA: Xmit ZDACW 37046\n [Z Motor]
17-03-18 05:51:00.274 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:51:00.284 -07 000000610 INF: FPGA: 'ZDACW 37046' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:00.284 -07 000000424 INF: FPGA: Recv ZDACR 37046
17-03-18 05:51:00.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:00.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.454 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.973092,
17-03-18 05:51:00.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35696
17-03-18 05:51:00.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:51:00.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.474 -07 000000462 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:51:00.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:00.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35691
17-03-18 05:51:00.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.504 -07 000000502 INF: FPGA: Recv ZSGSRD 35682
17-03-18 05:51:00.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:00.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.524 -07 000000447 INF: FPGA: Recv ZSGSRD 35693
17-03-18 05:51:00.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:00.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.544 -07 000000437 INF: FPGA: Recv ZSGSRD 35686
17-03-18 05:51:00.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:00.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.554 -07 000000447 INF: FPGA: Recv ZSGSRD 35692
17-03-18 05:51:00.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:51:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.574 -07 000000447 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:51:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:00.584 -07 000000437 INF: FPGA: Recv ZSGSRD 35684
17-03-18 05:51:00.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:00.594 -07 000000502 INF: FPGA: Recv ZPIEZORD 31531
17-03-18 05:51:00.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:00.604 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.2 V.
17-03-18 05:51:00.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35689 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35689 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35682 (-168.7 uncal um), Max = 35696 (-168.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:00.604 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35689, posNoise = 7, negNoise = 7
17-03-18 05:51:00.604 -07 000000610 INF: Z Motor: After move to -0.169586, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:00.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 05:51:00.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:00.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:00.604 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:00.604 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:00.604 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:00.604 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:00.604 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:51:00.604 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:00.604 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:00.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:00.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:00.604 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:00.604 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:00.614 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:00.614 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:00.614 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:00.624 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:51:00.624 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:00.624 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:51:00.624 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:51:00.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37222 150\n [Camera]
17-03-18 05:51:00.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:01.264 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:01.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:01.274 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:01.274 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:01.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:51:01.274 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:01.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:01.274 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:01.274 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:01.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:51:01.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37222 832
17-03-18 05:51:01.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:01.674 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:51:01.674 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:01.674 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:01.674 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:51:01.674 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:51:01.674 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:01.674 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:01.674 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:51:01.674 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:01.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:51:01.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:01.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:01.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:01.824 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:01.824 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:01.824 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:51:01.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:01.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:01.834 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:01.834 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:01.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:51:02.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:02.014 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:02.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37222 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-18 05:51:02.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:02.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169597059138442. ------
17-03-18 05:51:02.024 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:02.024 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17637 mm
17-03-18 05:51:02.024 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:02.024 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:02.034 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:02.034 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38528, sync = True, waitForSettling = False)
17-03-18 05:51:02.034 -07 000000437 INF: Z Motor: Moving to -0.176370 mm, started at -0.169597 mm, distance = -6.77 um
17-03-18 05:51:02.034 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:02.034 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:51:02.034 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:51:02.044 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:02.044 -07 000000447 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:51:02.054 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:02.054 -07 000000462 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:02.054 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:02.054 -07 000000462 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:51:02.054 -07 000000437 INF: FPGA: Xmit ZDACW 38528\n [Z Motor]
17-03-18 05:51:02.054 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:51:02.064 -07 000000437 INF: FPGA: 'ZDACW 38528' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:02.064 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:02.074 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:02.074 -07 000000569 INF: FPGA: Recv ZDACR 38528
17-03-18 05:51:02.084 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:51:02.084 -07 000000437 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:51:02.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:51:02.224 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:02.224 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:02.234 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:02.234 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:02.234 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:51:02.234 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:51:02.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:51:02.344 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 05:51:02.344 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:02.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:02.354 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 05:51:02.444 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:51:02.444 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 05:51:02.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:02.494 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:51:02.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:51:02.504 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:02.504 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:51:02.504 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-18 05:51:03.454 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:03.454 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:51:03.464 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:03.464 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:03.494 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:03.494 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:03.494 -07 000000462 INF: Y Motor: Moved to 65.7134 after 1467 ms (table move)
17-03-18 05:51:03.504 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176370 mm (DAC = 38528)
17-03-18 05:51:03.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.504 -07 000000462 INF: FPGA: Recv ZSGSRD 36739
17-03-18 05:51:03.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:03.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.514 -07 000000424 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:51:03.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.524 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.524 -07 000000462 INF: FPGA: Recv ZSGSRD 36747
17-03-18 05:51:03.534 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.534 -07 000000437 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:51:03.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.544 -07 000000437 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:51:03.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.554 -07 000000437 INF: FPGA: Recv ZSGSRD 36745
17-03-18 05:51:03.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.564 -07 000000502 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:51:03.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.574 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.574 -07 000000502 INF: FPGA: Recv ZSGSRD 36745
17-03-18 05:51:03.584 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.584 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.584 -07 000000461 INF: FPGA: Recv ZSGSRD 36748
17-03-18 05:51:03.594 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.594 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:03.594 -07 000000474 INF: FPGA: Recv ZSGSRD 36748
17-03-18 05:51:03.604 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.604 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:03.604 -07 000000447 INF: FPGA: Recv ZPIEZORD 32899
17-03-18 05:51:03.614 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.5 V.
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36744 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36745 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36744, posNoise = 8, negNoise = 6
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: After move to -0.176370, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: Settle wait time = 1471 ms, measure time = 109 ms (allowed 150 ms), total time = 1580 ms
17-03-18 05:51:03.614 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:03.664 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 05:51:03.664 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:03.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:03.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:03.664 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:03.664 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:03.664 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:03.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:03.674 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:03.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:03.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:03.674 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:03.684 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:51:03.684 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:51:03.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:03.734 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:04.034 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:04.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:04.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:04.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:04.074 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:04.074 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:04.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:51:04.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:51:04.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:04.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:04.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:51:04.174 -07 000000626 INF: Autofocus start
17-03-18 05:51:04.174 -07 000000626 INF: MeasureProfile start
17-03-18 05:51:04.174 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:04.174 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:04.184 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:04.184 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:04.184 -07 000000626 INF: MeasureProfile done
17-03-18 05:51:04.184 -07 000000626 INF: X=-32  Z correction [um]=-0.2344
17-03-18 05:51:04.184 -07 000000626 INF: Autofocus finished
17-03-18 05:51:04.384 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:04.384 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:51:04.384 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176374602948. ----------
17-03-18 05:51:04.384 -07 000000610 INF: Cycle	142	Tile	8	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:04.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36989, sync = True, waitForSettling = True)
17-03-18 05:51:04.394 -07 000000610 INF: Z Motor: Moving to -0.169325 mm, started at -0.176375 mm, distance = 7.05 um
17-03-18 05:51:04.394 -07 000000610 INF: FPGA: Xmit ZDACW 36989\n [Z Motor]
17-03-18 05:51:04.394 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:51:04.404 -07 000000610 INF: FPGA: 'ZDACW 36989' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:04.404 -07 000000626 INF: FPGA: Recv ZDACR 36989
17-03-18 05:51:04.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.564 -07 000000447 INF: FPGA: Recv ZSGSRD 35649
17-03-18 05:51:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.574 -07 000000461 INF: FPGA: Recv ZSGSRD 35649
17-03-18 05:51:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.584 -07 000000626 INF: FPGA: Recv ZSGSRD 35645
17-03-18 05:51:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.594 -07 000000461 INF: FPGA: Recv ZSGSRD 35643
17-03-18 05:51:04.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.604 -07 000000626 INF: FPGA: Recv ZSGSRD 35643
17-03-18 05:51:04.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35648
17-03-18 05:51:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.624 -07 000000626 INF: FPGA: Recv ZSGSRD 35646
17-03-18 05:51:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35642
17-03-18 05:51:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35653
17-03-18 05:51:04.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:04.654 -07 000000461 INF: FPGA: Recv ZSGSRD 35649
17-03-18 05:51:04.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:04.664 -07 000000626 INF: FPGA: Recv ZPIEZORD 31429
17-03-18 05:51:04.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:04.674 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.3 V.
17-03-18 05:51:04.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35647 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35647 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35642 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:51:04.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35647, posNoise = 6, negNoise = 5
17-03-18 05:51:04.674 -07 000000610 INF: Z Motor: After move to -0.169325, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:04.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:51:04.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:04.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:04.674 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:04.674 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:04.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:04.674 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:04.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:04.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:04.674 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:04.674 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:04.674 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:04.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:04.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:04.674 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:04.684 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:04.684 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:04.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:51:04.684 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:04.684 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:51:04.684 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:51:04.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37166 150\n [Camera]
17-03-18 05:51:04.894 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:05.334 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:05.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:05.344 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:05.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:05.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:05.344 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:05.344 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:05.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:51:05.354 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:05.354 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:51:05.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37166 832
17-03-18 05:51:05.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:05.724 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 05:51:05.724 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:51:05.724 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:05.724 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:05.724 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:51:05.724 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:51:05.724 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:05.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:05.724 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:51:05.734 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:51:05.864 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.023489,
17-03-18 05:51:05.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:05.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:05.894 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:05.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:05.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:05.904 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:05.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:05.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:51:05.904 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:05.904 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 05:51:06.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:06.084 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:06.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37166 150' command took 2 ms to send, 1388 ms to get response, and 1396 ms overall
17-03-18 05:51:06.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:06.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169327242228488. ------
17-03-18 05:51:06.214 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17566 mm
17-03-18 05:51:06.214 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:06.214 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:06.214 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:51:06.214 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:51:06.214 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38373, sync = True, waitForSettling = False)
17-03-18 05:51:06.214 -07 000000455 INF: Z Motor: Moving to -0.175660 mm, started at -0.169327 mm, distance = -6.33 um
17-03-18 05:51:06.214 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:06.224 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:06.224 -07 000000455 INF: FPGA: Xmit ZDACW 38373\n [Z Motor]
17-03-18 05:51:06.224 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:51:06.234 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:06.234 -07 000000455 INF: FPGA: 'ZDACW 38373' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:51:06.234 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:51:06.244 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:06.244 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:51:06.244 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:06.244 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:06.244 -07 000000462 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:51:06.254 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:06.254 -07 000000629 INF: FPGA: Recv ZDACR 38373
17-03-18 05:51:06.264 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:06.264 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:06.264 -07 000000455 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:51:06.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:51:06.294 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:51:06.294 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:06.294 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:51:06.294 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:51:06.294 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:06.294 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:06.294 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:51:06.294 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:06.304 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:51:06.444 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:06.444 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:51:06.634 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:51:06.634 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:51:06.694 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:06.694 -07 000000455 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:51:06.704 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:06.704 -07 000000462 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:06.704 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:51:06.704 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:51:06.804 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:07.654 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:07.654 -07 000000626 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:51:07.664 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:07.664 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:07.694 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:07.694 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:51:07.694 -07 000000462 INF: Y Motor: Moved to 66.5386 after 1475 ms (table move)
17-03-18 05:51:07.694 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175660 mm (DAC = 38373)
17-03-18 05:51:07.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36635
17-03-18 05:51:07.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:51:07.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:51:07.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:07.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.714 -07 000000424 INF: FPGA: Recv ZSGSRD 36627
17-03-18 05:51:07.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.724 -07 000000455 INF: FPGA: Recv ZSGSRD 36639
17-03-18 05:51:07.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.734 -07 000000455 INF: FPGA: Recv ZSGSRD 36624
17-03-18 05:51:07.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.744 -07 000000455 INF: FPGA: Recv ZSGSRD 36631
17-03-18 05:51:07.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.754 -07 000000455 INF: FPGA: Recv ZSGSRD 36641
17-03-18 05:51:07.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.764 -07 000000455 INF: FPGA: Recv ZSGSRD 36636
17-03-18 05:51:07.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.774 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36638
17-03-18 05:51:07.784 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.784 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:07.784 -07 000000455 INF: FPGA: Recv ZSGSRD 36632
17-03-18 05:51:07.794 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.794 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:07.794 -07 000000455 INF: FPGA: Recv ZPIEZORD 32762
17-03-18 05:51:07.804 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.6 V.
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36633 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36634 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36624 (-174.7 uncal um), Max = 36641 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36633, posNoise = 8, negNoise = 9
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: After move to -0.175660, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: Settle wait time = 1479 ms, measure time = 102 ms (allowed 150 ms), total time = 1581 ms
17-03-18 05:51:07.804 -07 000000461 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:07.854 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 05:51:07.854 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:07.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:07.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:07.854 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:07.854 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:07.854 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:07.854 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:07.864 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:07.864 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:07.864 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:07.864 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:07.874 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:51:07.874 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:51:07.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:07.924 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:08.224 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:08.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:08.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:08.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:08.264 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:08.264 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:08.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 05:51:08.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:51:08.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:08.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:08.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:51:08.364 -07 000000461 INF: Autofocus start
17-03-18 05:51:08.364 -07 000000461 INF: MeasureProfile start
17-03-18 05:51:08.364 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:08.374 -07 000000461 INF: MeasureProfile done
17-03-18 05:51:08.374 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:51:08.374 -07 000000461 INF: Autofocus finished
17-03-18 05:51:08.384 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:08.384 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-18 05:51:08.384 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:08.584 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:08.584 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:08.584 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175661515400264. ----------
17-03-18 05:51:08.584 -07 000000610 INF: Cycle	142	Tile	9	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:08.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36906, sync = True, waitForSettling = True)
17-03-18 05:51:08.594 -07 000000610 INF: Z Motor: Moving to -0.168945 mm, started at -0.175662 mm, distance = 6.72 um
17-03-18 05:51:08.594 -07 000000610 INF: FPGA: Xmit ZDACW 36906\n [Z Motor]
17-03-18 05:51:08.594 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:51:08.604 -07 000000610 INF: FPGA: 'ZDACW 36906' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:08.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:08.604 -07 000000461 INF: FPGA: Recv ZDACR 36906
17-03-18 05:51:08.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:08.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.764 -07 000000455 INF: FPGA: Recv ZSGSRD 35590
17-03-18 05:51:08.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:08.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.774 -07 000000455 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:51:08.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35586
17-03-18 05:51:08.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.794 -07 000000474 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:51:08.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35586
17-03-18 05:51:08.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35590
17-03-18 05:51:08.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.824 -07 000000474 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:51:08.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.834 -07 000000461 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:51:08.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:51:08.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:08.854 -07 000000455 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:51:08.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:08.864 -07 000000461 INF: FPGA: Recv ZPIEZORD 31381
17-03-18 05:51:08.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:08.874 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.3 V.
17-03-18 05:51:08.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35588 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35587 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35586 (-168.1 uncal um), Max = 35593 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:51:08.874 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35588, posNoise = 5, negNoise = 2
17-03-18 05:51:08.874 -07 000000610 INF: Z Motor: After move to -0.168945, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:08.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:51:08.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:08.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:08.874 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:08.874 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:08.874 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:08.874 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:08.874 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:08.874 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:08.884 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:08.884 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:08.884 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:08.884 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:08.884 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:08.884 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:08.884 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:08.884 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:08.894 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:51:08.894 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:51:08.894 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:51:08.894 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:51:08.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37083 150\n [Camera]
17-03-18 05:51:09.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:09.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:09.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:09.544 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:09.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:09.554 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:09.554 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:51:09.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:09.554 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:09.554 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:09.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:51:09.744 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37083 832
17-03-18 05:51:09.894 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:09.924 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 05:51:09.924 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:51:09.924 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:51:09.924 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:09.924 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:51:09.924 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:09.934 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:09.934 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:51:09.934 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:51:09.944 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:51:10.104 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-18 05:51:10.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-18 05:51:10.114 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:10.114 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-18 05:51:10.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-18 05:51:10.114 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:10.114 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:51:10.114 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:10.114 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:10.114 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:51:10.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:10.294 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:10.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37083 150' command took 2 ms to send, 1388 ms to get response, and 1400 ms overall
17-03-18 05:51:10.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:10.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168948213712124. ------
17-03-18 05:51:10.304 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:10.304 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17564 mm
17-03-18 05:51:10.304 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:10.304 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:10.304 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38367, sync = True, waitForSettling = False)
17-03-18 05:51:10.304 -07 000000474 INF: Z Motor: Moving to -0.175633 mm, started at -0.168948 mm, distance = -6.68 um
17-03-18 05:51:10.304 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:51:10.304 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:51:10.314 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:10.314 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:10.314 -07 000000447 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:51:10.324 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:51:10.324 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:10.324 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:10.324 -07 000000502 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:51:10.324 -07 000000474 INF: FPGA: Xmit ZDACW 38367\n [Z Motor]
17-03-18 05:51:10.324 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:51:10.334 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:10.334 -07 000000474 INF: FPGA: 'ZDACW 38367' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:51:10.344 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:10.354 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:10.354 -07 000000626 INF: FPGA: Recv ZDACR 38367
17-03-18 05:51:10.364 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:10.364 -07 000000474 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:51:10.514 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:51:10.514 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:51:10.514 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:10.514 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:51:10.514 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:51:10.514 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:10.514 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:10.524 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:10.524 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:51:10.524 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:51:10.534 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:10.534 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:51:10.714 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:51:10.714 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:51:10.764 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:10.774 -07 000000626 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:51:10.784 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:10.784 -07 000000502 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:10.784 -07 000000502 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:51:10.784 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:51:11.734 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:11.814 -07 000000626 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:51:11.814 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:11.814 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 70 ms to get response, and 80 ms overall
17-03-18 05:51:11.814 -07 000000502 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:11.844 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:11.844 -07 000000502 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:51:11.844 -07 000000502 INF: Y Motor: Moved to 67.3716 after 1535 ms (table move)
17-03-18 05:51:11.844 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175633 mm (DAC = 38367)
17-03-18 05:51:11.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.854 -07 000000462 INF: FPGA: Recv ZSGSRD 36623
17-03-18 05:51:11.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 05:51:11.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.854 -07 000000502 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:51:11.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:51:11.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.864 -07 000000462 INF: FPGA: Recv ZSGSRD 36633
17-03-18 05:51:11.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.874 -07 000000438 INF: FPGA: Recv ZSGSRD 36629
17-03-18 05:51:11.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.884 -07 000000462 INF: FPGA: Recv ZSGSRD 36627
17-03-18 05:51:11.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.894 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.894 -07 000000438 INF: FPGA: Recv ZSGSRD 36626
17-03-18 05:51:11.904 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.904 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.904 -07 000000474 INF: FPGA: Recv ZSGSRD 36635
17-03-18 05:51:11.914 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.914 -07 000000438 INF: FPGA: Recv ZSGSRD 36638
17-03-18 05:51:11.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.924 -07 000000502 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:51:11.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:11.934 -07 000000474 INF: FPGA: Recv ZSGSRD 36632
17-03-18 05:51:11.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.944 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:11.944 -07 000000626 INF: FPGA: Recv ZPIEZORD 32759
17-03-18 05:51:11.954 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.6 V.
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36630 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36628 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36623 (-174.7 uncal um), Max = 36638 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36630, posNoise = 8, negNoise = 7
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: After move to -0.175633, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: Settle wait time = 1539 ms, measure time = 102 ms (allowed 150 ms), total time = 1641 ms
17-03-18 05:51:11.954 -07 000000629 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:12.004 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1696 ms
17-03-18 05:51:12.004 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:12.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:12.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:12.004 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:12.004 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:12.004 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:12.004 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:12.004 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:12.004 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:12.014 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:12.014 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:12.024 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:51:12.024 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:51:12.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:12.064 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:12.124 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.03576,
17-03-18 05:51:12.364 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:12.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:12.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:12.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:51:12.404 -07 000000626 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:51:12.414 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:12.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 05:51:12.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:51:12.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:12.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:51:12.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:51:12.514 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:12.514 -07 000000461 INF: Autofocus start
17-03-18 05:51:12.514 -07 000000461 INF: MeasureProfile start
17-03-18 05:51:12.514 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:12.524 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:12.524 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:12.534 -07 000000461 INF: MeasureProfile done
17-03-18 05:51:12.534 -07 000000461 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:51:12.534 -07 000000461 INF: Autofocus finished
17-03-18 05:51:12.724 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:12.724 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:12.724 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175642242763839. ----------
17-03-18 05:51:12.724 -07 000000610 INF: Cycle	142	Tile	10	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:12.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36918, sync = True, waitForSettling = True)
17-03-18 05:51:12.734 -07 000000610 INF: Z Motor: Moving to -0.169000 mm, started at -0.175642 mm, distance = 6.64 um
17-03-18 05:51:12.734 -07 000000610 INF: FPGA: Xmit ZDACW 36918\n [Z Motor]
17-03-18 05:51:12.734 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:51:12.744 -07 000000610 INF: FPGA: 'ZDACW 36918' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:12.744 -07 000000626 INF: FPGA: Recv ZDACR 36918
17-03-18 05:51:12.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:12.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.904 -07 000000629 INF: FPGA: Recv ZSGSRD 35596
17-03-18 05:51:12.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:12.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.914 -07 000000438 INF: FPGA: Recv ZSGSRD 35601
17-03-18 05:51:12.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.924 -07 000000502 INF: FPGA: Recv ZSGSRD 35599
17-03-18 05:51:12.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.934 -07 000000626 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:51:12.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.944 -07 000000502 INF: FPGA: Recv ZSGSRD 35600
17-03-18 05:51:12.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.954 -07 000000461 INF: FPGA: Recv ZSGSRD 35595
17-03-18 05:51:12.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:12.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.964 -07 000000629 INF: FPGA: Recv ZSGSRD 35601
17-03-18 05:51:12.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.974 -07 000000438 INF: FPGA: Recv ZSGSRD 35597
17-03-18 05:51:12.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.984 -07 000000629 INF: FPGA: Recv ZSGSRD 35590
17-03-18 05:51:12.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:12.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:12.994 -07 000000462 INF: FPGA: Recv ZSGSRD 35597
17-03-18 05:51:13.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:13.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:13.004 -07 000000474 INF: FPGA: Recv ZPIEZORD 31380
17-03-18 05:51:13.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:13.014 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.3 V.
17-03-18 05:51:13.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35597 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35597 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35601 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:13.014 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35597, posNoise = 4, negNoise = 7
17-03-18 05:51:13.014 -07 000000610 INF: Z Motor: After move to -0.169000, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:13.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:51:13.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:13.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:13.014 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:13.014 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:13.014 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:13.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:13.014 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:13.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:13.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:51:13.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:13.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:13.014 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:13.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:51:13.024 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:13.024 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:13.024 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:13.034 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:51:13.034 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:51:13.034 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:51:13.044 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:51:13.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37095 150\n [Camera]
17-03-18 05:51:13.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:13.694 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:13.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:13.694 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:13.694 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:13.694 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:51:13.694 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:13.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:13.694 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:13.694 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:13.694 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:51:13.884 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37095 832
17-03-18 05:51:14.034 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:14.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:51:14.064 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:51:14.064 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:14.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:51:14.074 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:51:14.074 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:14.074 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:14.074 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:14.074 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:51:14.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:51:14.254 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:14.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:14.254 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:14.254 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:14.254 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:51:14.254 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:14.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:14.254 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:14.254 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:14.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:51:14.444 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:14.444 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:14.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37095 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-18 05:51:14.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:14.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.1690060316214. ------
17-03-18 05:51:14.574 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:14.574 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17533 mm
17-03-18 05:51:14.574 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:14.574 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:14.574 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:51:14.574 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:51:14.574 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38300, sync = True, waitForSettling = False)
17-03-18 05:51:14.574 -07 000000438 INF: Z Motor: Moving to -0.175326 mm, started at -0.169006 mm, distance = -6.32 um
17-03-18 05:51:14.584 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:14.584 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:14.584 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:51:14.594 -07 000000438 INF: FPGA: Xmit ZDACW 38300\n [Z Motor]
17-03-18 05:51:14.594 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:51:14.594 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:14.594 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:14.594 -07 000000461 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:51:14.594 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:51:14.604 -07 000000438 INF: FPGA: 'ZDACW 38300' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:51:14.604 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:14.614 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:14.624 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:14.624 -07 000000590 INF: FPGA: Recv ZDACR 38300
17-03-18 05:51:14.634 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:51:14.634 -07 000000438 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:51:14.654 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:51:14.654 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:14.654 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:14.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:51:14.654 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:51:14.654 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:14.654 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:14.654 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:51:14.654 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:51:14.664 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:51:14.804 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:14.804 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:51:14.984 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 05:51:14.984 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:51:15.034 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:15.044 -07 000000606 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:51:15.044 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:51:15.044 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:15.044 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 05:51:15.044 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 05:51:15.994 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:15.994 -07 000000462 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:51:16.004 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:16.004 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:16.034 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:16.034 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:16.034 -07 000000461 INF: Y Motor: Moved to 68.2046 after 1457 ms (table move)
17-03-18 05:51:16.034 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175326 mm (DAC = 38300)
17-03-18 05:51:16.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.034 -07 000000438 INF: FPGA: Recv ZSGSRD 36587
17-03-18 05:51:16.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:51:16.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.044 -07 000000569 INF: FPGA: Recv ZSGSRD 36582
17-03-18 05:51:16.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.054 -07 000000569 INF: FPGA: Recv ZSGSRD 36581
17-03-18 05:51:16.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.064 -07 000000569 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:51:16.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.074 -07 000000569 INF: FPGA: Recv ZSGSRD 36574
17-03-18 05:51:16.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.084 -07 000000569 INF: FPGA: Recv ZSGSRD 36589
17-03-18 05:51:16.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.094 -07 000000569 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:51:16.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.104 -07 000000569 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:51:16.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.114 -07 000000569 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:51:16.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:16.124 -07 000000569 INF: FPGA: Recv ZSGSRD 36585
17-03-18 05:51:16.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.134 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:16.134 -07 000000569 INF: FPGA: Recv ZPIEZORD 32723
17-03-18 05:51:16.144 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.5 V.
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36582 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36584 (-174.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36574 (-174.4 uncal um), Max = 36589 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36582, posNoise = 7, negNoise = 8
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: After move to -0.175326, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:51:16.144 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:16.194 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:51:16.194 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:16.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:16.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:16.194 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:16.194 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:16.194 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:16.194 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:16.194 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:16.194 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:16.204 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:16.204 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:16.204 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:51:16.204 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:51:16.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:16.254 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:16.554 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:16.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:16.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:16.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:16.594 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:16.594 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:16.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:51:16.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:51:16.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:16.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:16.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:51:16.694 -07 000000626 INF: Autofocus start
17-03-18 05:51:16.694 -07 000000626 INF: MeasureProfile start
17-03-18 05:51:16.694 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:16.694 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:16.704 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:16.704 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:16.704 -07 000000626 INF: MeasureProfile done
17-03-18 05:51:16.704 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:51:16.704 -07 000000626 INF: Autofocus finished
17-03-18 05:51:16.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:16.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:16.904 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:16.904 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:16.904 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175333880581034. ----------
17-03-18 05:51:16.914 -07 000000610 INF: Cycle	142	Tile	11	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:16.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36797, sync = True, waitForSettling = True)
17-03-18 05:51:16.914 -07 000000610 INF: Z Motor: Moving to -0.168446 mm, started at -0.175334 mm, distance = 6.89 um
17-03-18 05:51:16.914 -07 000000610 INF: FPGA: Xmit ZDACW 36797\n [Z Motor]
17-03-18 05:51:16.914 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:51:16.924 -07 000000610 INF: FPGA: 'ZDACW 36797' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:51:16.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:16.924 -07 000000569 INF: FPGA: Recv ZDACR 36797
17-03-18 05:51:16.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:16.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:17.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.084 -07 000000474 INF: FPGA: Recv ZSGSRD 35510
17-03-18 05:51:17.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-18 05:51:17.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.104 -07 000000502 INF: FPGA: Recv ZSGSRD 35514
17-03-18 05:51:17.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35504
17-03-18 05:51:17.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.124 -07 000000474 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:51:17.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.134 -07 000000455 INF: FPGA: Recv ZSGSRD 35519
17-03-18 05:51:17.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.144 -07 000000590 INF: FPGA: Recv ZSGSRD 35511
17-03-18 05:51:17.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35507
17-03-18 05:51:17.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.174 -07 000000502 INF: FPGA: Recv ZSGSRD 35515
17-03-18 05:51:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:17.184 -07 000000455 INF: FPGA: Recv ZSGSRD 35509
17-03-18 05:51:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:17.194 -07 000000502 INF: FPGA: Recv ZPIEZORD 31279
17-03-18 05:51:17.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:17.204 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.3 V.
17-03-18 05:51:17.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35512 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35511 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35504 (-167.5 uncal um), Max = 35519 (-167.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:51:17.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35512, posNoise = 7, negNoise = 8
17-03-18 05:51:17.204 -07 000000610 INF: Z Motor: After move to -0.168446, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:17.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 05:51:17.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:17.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:17.204 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:17.204 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:17.204 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:17.204 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:17.204 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:17.204 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:17.204 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:17.204 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:17.204 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:17.204 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:17.214 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:51:17.214 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:17.214 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:17.214 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:17.224 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:51:17.224 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:51:17.224 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:51:17.224 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:51:17.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36974 150\n [Camera]
17-03-18 05:51:17.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:17.484 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.009895,
17-03-18 05:51:17.874 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:17.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:17.874 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:17.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:17.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:17.884 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:17.884 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:17.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:51:17.884 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:17.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:51:18.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36974 832
17-03-18 05:51:18.214 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:18.264 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:51:18.264 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:51:18.264 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:18.264 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:18.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:51:18.274 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:51:18.274 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:18.274 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:51:18.274 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:18.274 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:51:18.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:18.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:18.434 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:18.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:18.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:18.434 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:18.444 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:18.444 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:51:18.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:18.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:51:18.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:18.624 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:18.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36974 150' command took 2 ms to send, 1387 ms to get response, and 1396 ms overall
17-03-18 05:51:18.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:18.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.16845997358935. ------
17-03-18 05:51:18.634 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:18.634 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17521 mm
17-03-18 05:51:18.634 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:18.754 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:18.754 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 05:51:18.754 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:18.754 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38274, sync = True, waitForSettling = False)
17-03-18 05:51:18.754 -07 000000461 INF: Z Motor: Moving to -0.175207 mm, started at -0.168460 mm, distance = -6.75 um
17-03-18 05:51:18.754 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:51:18.754 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:51:18.764 -07 000000461 INF: FPGA: Xmit ZDACW 38274\n [Z Motor]
17-03-18 05:51:18.764 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:51:18.774 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:18.774 -07 000000461 INF: FPGA: 'ZDACW 38274' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:51:18.774 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:51:18.784 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:51:18.784 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:18.784 -07 000000447 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:18.784 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:18.784 -07 000000447 INF: Y Motor: Moving 1341 steps-16
17-03-18 05:51:18.784 -07 000000437 INF: FPGA: Recv ZDACR 38274
17-03-18 05:51:18.794 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:18.794 -07 000000461 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:51:18.794 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:18.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:51:18.844 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:51:18.844 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:18.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:51:18.844 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:51:18.844 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:18.844 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:18.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:51:18.854 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:18.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:51:18.954 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:18.954 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 05:51:19.164 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:51:19.164 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:51:19.214 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:19.224 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:51:19.224 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:51:19.224 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:19.224 -07 000000447 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:51:19.224 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.165 mm/sec
17-03-18 05:51:20.174 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:20.174 -07 000000590 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:51:20.184 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.184 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:20.214 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:20.214 -07 000000447 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:20.214 -07 000000447 INF: Y Motor: Moved to 69.0264 after 1455 ms (table move)
17-03-18 05:51:20.214 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175207 mm (DAC = 38274)
17-03-18 05:51:20.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.214 -07 000000569 INF: FPGA: Recv ZSGSRD 36567
17-03-18 05:51:20.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:20.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.224 -07 000000438 INF: FPGA: Recv ZSGSRD 36569
17-03-18 05:51:20.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36564
17-03-18 05:51:20.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36557
17-03-18 05:51:20.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.254 -07 000000438 INF: FPGA: Recv ZSGSRD 36561
17-03-18 05:51:20.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.264 -07 000000461 INF: FPGA: Recv ZSGSRD 36564
17-03-18 05:51:20.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.274 -07 000000438 INF: FPGA: Recv ZSGSRD 36569
17-03-18 05:51:20.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.284 -07 000000569 INF: FPGA: Recv ZSGSRD 36563
17-03-18 05:51:20.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.294 -07 000000474 INF: FPGA: Recv ZSGSRD 36567
17-03-18 05:51:20.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:20.304 -07 000000455 INF: FPGA: Recv ZSGSRD 36569
17-03-18 05:51:20.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.314 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:20.314 -07 000000474 INF: FPGA: Recv ZPIEZORD 32717
17-03-18 05:51:20.324 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.5 V.
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36565 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36566 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36557 (-174.3 uncal um), Max = 36569 (-174.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36565, posNoise = 4, negNoise = 8
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: After move to -0.175207, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:51:20.324 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:20.374 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 05:51:20.374 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:20.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:20.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:20.374 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:20.374 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:20.374 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:20.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:20.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:20.384 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:20.384 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:20.384 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:20.384 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:51:20.384 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:51:20.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:20.434 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:20.734 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:20.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:20.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:20.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:20.774 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:20.774 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:20.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:51:20.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:51:20.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:20.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:20.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:51:20.874 -07 000000569 INF: Autofocus start
17-03-18 05:51:20.874 -07 000000569 INF: MeasureProfile start
17-03-18 05:51:20.874 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:20.874 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:20.884 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:20.884 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:20.884 -07 000000569 INF: MeasureProfile done
17-03-18 05:51:20.884 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:51:20.884 -07 000000569 INF: Autofocus finished
17-03-18 05:51:21.084 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:21.084 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:21.084 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.175224668974624. ----------
17-03-18 05:51:21.084 -07 000000610 INF: Cycle	142	Tile	12	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:21.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36771, sync = True, waitForSettling = True)
17-03-18 05:51:21.094 -07 000000610 INF: Z Motor: Moving to -0.168327 mm, started at -0.175225 mm, distance = 6.90 um
17-03-18 05:51:21.094 -07 000000610 INF: FPGA: Xmit ZDACW 36771\n [Z Motor]
17-03-18 05:51:21.094 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:51:21.104 -07 000000610 INF: FPGA: 'ZDACW 36771' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:21.104 -07 000000474 INF: FPGA: Recv ZDACR 36771
17-03-18 05:51:21.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:21.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.264 -07 000000502 INF: FPGA: Recv ZSGSRD 35494
17-03-18 05:51:21.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:21.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.274 -07 000000461 INF: FPGA: Recv ZSGSRD 35491
17-03-18 05:51:21.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.284 -07 000000502 INF: FPGA: Recv ZSGSRD 35491
17-03-18 05:51:21.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.294 -07 000000461 INF: FPGA: Recv ZSGSRD 35492
17-03-18 05:51:21.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.304 -07 000000626 INF: FPGA: Recv ZSGSRD 35495
17-03-18 05:51:21.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.314 -07 000000569 INF: FPGA: Recv ZSGSRD 35487
17-03-18 05:51:21.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.324 -07 000000437 INF: FPGA: Recv ZSGSRD 35494
17-03-18 05:51:21.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35490
17-03-18 05:51:21.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.344 -07 000000437 INF: FPGA: Recv ZSGSRD 35488
17-03-18 05:51:21.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:21.354 -07 000000569 INF: FPGA: Recv ZSGSRD 35493
17-03-18 05:51:21.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:21.364 -07 000000437 INF: FPGA: Recv ZPIEZORD 31263
17-03-18 05:51:21.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:21.374 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.3 V.
17-03-18 05:51:21.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35492 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35492 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35487 (-167.4 uncal um), Max = 35495 (-167.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:51:21.374 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35492, posNoise = 3, negNoise = 5
17-03-18 05:51:21.374 -07 000000610 INF: Z Motor: After move to -0.168327, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:21.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:51:21.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:21.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:21.374 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:21.374 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:21.374 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:21.374 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:21.374 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:21.374 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:21.374 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:51:21.374 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:21.374 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:21.374 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:21.384 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:21.384 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:21.384 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:21.384 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:21.394 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:51:21.394 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:51:21.394 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:51:21.394 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:21.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36948 150\n [Camera]
17-03-18 05:51:21.594 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:21.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:22.044 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:22.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:22.044 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:22.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:22.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:22.044 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:22.044 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:22.044 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:51:22.054 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:22.054 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:51:22.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36948 832
17-03-18 05:51:22.384 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:22.434 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:51:22.434 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:51:22.434 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:22.434 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:51:22.434 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:51:22.434 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:22.434 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:22.434 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:51:22.434 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:22.444 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:51:22.594 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:22.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:22.604 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:22.604 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:22.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:51:22.604 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:22.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:22.604 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:22.604 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:22.604 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:51:22.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:22.794 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:22.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36948 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:51:22.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:22.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168331489346515. ------
17-03-18 05:51:22.794 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:22.794 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17468 mm
17-03-18 05:51:22.794 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:22.804 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:51:22.804 -07 000000438 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:51:22.804 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:23.004 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:51:23.004 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:51:23.004 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:23.004 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:51:23.004 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:51:23.004 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:23.014 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:23.014 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:51:23.014 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:51:23.014 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:51:23.024 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38159, sync = True, waitForSettling = False)
17-03-18 05:51:23.024 -07 000000474 INF: Z Motor: Moving to -0.174681 mm, started at -0.168331 mm, distance = -6.35 um
17-03-18 05:51:23.024 -07 000000474 INF: FPGA: Xmit ZDACW 38159\n [Z Motor]
17-03-18 05:51:23.024 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:23.034 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:51:23.034 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:51:23.034 -07 000000474 INF: FPGA: 'ZDACW 38159' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:51:23.034 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:23.034 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.996267,
17-03-18 05:51:23.034 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 232 ms overall
17-03-18 05:51:23.034 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 229 ms overall
17-03-18 05:51:23.034 -07 000000438 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:23.034 -07 000000438 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:23.034 -07 000000438 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:51:23.034 -07 000000437 INF: FPGA: Recv ZDACR 38159
17-03-18 05:51:23.044 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:23.044 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:23.044 -07 000000474 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 05:51:23.054 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:23.244 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:23.244 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 05:51:23.424 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 05:51:23.424 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:51:23.474 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:23.484 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:51:23.484 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:51:23.484 -07 000000438 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:23.484 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:51:23.484 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.142 mm/sec
17-03-18 05:51:24.434 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:24.434 -07 000000462 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:51:24.444 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:24.444 -07 000000438 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:24.474 -07 000000438 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:24.474 -07 000000438 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:24.474 -07 000000438 INF: Y Motor: Moved to 69.8623 after 1670 ms (table move)
17-03-18 05:51:24.474 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174681 mm (DAC = 38159)
17-03-18 05:51:24.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.474 -07 000000629 INF: FPGA: Recv ZSGSRD 36496
17-03-18 05:51:24.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:24.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.484 -07 000000424 INF: FPGA: Recv ZSGSRD 36485
17-03-18 05:51:24.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.494 -07 000000424 INF: FPGA: Recv ZSGSRD 36478
17-03-18 05:51:24.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.504 -07 000000424 INF: FPGA: Recv ZSGSRD 36478
17-03-18 05:51:24.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.514 -07 000000606 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:51:24.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.524 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.524 -07 000000606 INF: FPGA: Recv ZSGSRD 36481
17-03-18 05:51:24.534 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.534 -07 000000455 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:51:24.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.544 -07 000000606 INF: FPGA: Recv ZSGSRD 36483
17-03-18 05:51:24.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.554 -07 000000455 INF: FPGA: Recv ZSGSRD 36486
17-03-18 05:51:24.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:24.564 -07 000000455 INF: FPGA: Recv ZSGSRD 36490
17-03-18 05:51:24.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.574 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:24.574 -07 000000629 INF: FPGA: Recv ZPIEZORD 32640
17-03-18 05:51:24.584 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.5 V.
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36484 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36482 (-173.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36478 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36484, posNoise = 12, negNoise = 6
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: After move to -0.174681, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:51:24.584 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:24.634 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1831 ms
17-03-18 05:51:24.634 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:24.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:24.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:24.634 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:24.634 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:24.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:24.634 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:24.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:51:24.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:24.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:24.644 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:24.644 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:51:24.644 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:51:24.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:24.694 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:24.994 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:24.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:24.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:25.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-18 05:51:25.034 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:25.034 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:25.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:51:25.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:51:25.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:25.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:51:25.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 05:51:25.134 -07 000000438 INF: Autofocus start
17-03-18 05:51:25.134 -07 000000438 INF: MeasureProfile start
17-03-18 05:51:25.134 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:25.144 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:25.144 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:25.144 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:25.154 -07 000000438 INF: MeasureProfile done
17-03-18 05:51:25.154 -07 000000438 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 05:51:25.154 -07 000000438 INF: Autofocus finished
17-03-18 05:51:25.344 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:25.344 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:25.344 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174704307791142. ----------
17-03-18 05:51:25.344 -07 000000610 INF: Cycle	142	Tile	13	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:25.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36565, sync = True, waitForSettling = True)
17-03-18 05:51:25.354 -07 000000610 INF: Z Motor: Moving to -0.167384 mm, started at -0.174704 mm, distance = 7.32 um
17-03-18 05:51:25.354 -07 000000610 INF: FPGA: Xmit ZDACW 36565\n [Z Motor]
17-03-18 05:51:25.354 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:51:25.364 -07 000000610 INF: FPGA: 'ZDACW 36565' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:25.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:25.364 -07 000000626 INF: FPGA: Recv ZDACR 36565
17-03-18 05:51:25.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:25.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.524 -07 000000629 INF: FPGA: Recv ZSGSRD 35349
17-03-18 05:51:25.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:25.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.534 -07 000000629 INF: FPGA: Recv ZSGSRD 35342
17-03-18 05:51:25.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.544 -07 000000438 INF: FPGA: Recv ZSGSRD 35347
17-03-18 05:51:25.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.554 -07 000000626 INF: FPGA: Recv ZSGSRD 35343
17-03-18 05:51:25.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35348
17-03-18 05:51:25.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.574 -07 000000437 INF: FPGA: Recv ZSGSRD 35349
17-03-18 05:51:25.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.584 -07 000000424 INF: FPGA: Recv ZSGSRD 35347
17-03-18 05:51:25.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.594 -07 000000437 INF: FPGA: Recv ZSGSRD 35350
17-03-18 05:51:25.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.604 -07 000000437 INF: FPGA: Recv ZSGSRD 35345
17-03-18 05:51:25.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:25.614 -07 000000437 INF: FPGA: Recv ZSGSRD 35339
17-03-18 05:51:25.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:25.624 -07 000000437 INF: FPGA: Recv ZPIEZORD 31111
17-03-18 05:51:25.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:25.634 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.3 V.
17-03-18 05:51:25.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35347 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35339 (-166.5 uncal um), Max = 35350 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:25.634 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 4, negNoise = 7
17-03-18 05:51:25.634 -07 000000610 INF: Z Motor: After move to -0.167384, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:25.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:51:25.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:25.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:25.634 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:25.634 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:25.634 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:25.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:25.634 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:25.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:25.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:25.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:25.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:25.634 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:25.644 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:25.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:25.644 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:25.644 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:25.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:51:25.644 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:25.654 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:51:25.654 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:25.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36742 150\n [Camera]
17-03-18 05:51:25.854 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:26.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:26.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:26.304 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:26.304 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:26.304 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:51:26.304 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:26.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:26.304 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:26.304 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:26.304 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:51:26.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36742 832
17-03-18 05:51:26.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:26.704 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:51:26.704 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:51:26.704 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:51:26.704 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:26.704 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:26.704 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:26.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:26.704 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:26.704 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:51:26.714 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:51:26.804 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:26.864 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:26.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:26.864 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:26.864 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:26.864 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:51:26.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:26.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:26.864 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:26.864 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:26.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:51:27.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:27.054 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:27.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36742 150' command took 2 ms to send, 1392 ms to get response, and 1396 ms overall
17-03-18 05:51:27.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:27.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167393554373818. ------
17-03-18 05:51:27.054 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:27.054 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17385 mm
17-03-18 05:51:27.054 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:27.254 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:51:27.254 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:51:27.254 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:27.254 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:27.254 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:51:27.254 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:51:27.254 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:27.264 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:51:27.264 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:51:27.384 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 05:51:27.384 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:51:27.384 -07 000000437 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:51:27.384 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:27.394 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:27.394 -07 000000629 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:51:27.394 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 335 ms overall
17-03-18 05:51:27.394 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-18 05:51:27.394 -07 000000437 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:27.394 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:27.394 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37977, sync = True, waitForSettling = False)
17-03-18 05:51:27.394 -07 000000629 INF: Z Motor: Moving to -0.173848 mm, started at -0.167394 mm, distance = -6.45 um
17-03-18 05:51:27.394 -07 000000437 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:27.394 -07 000000437 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:51:27.404 -07 000000629 INF: FPGA: Xmit ZDACW 37977\n [Z Motor]
17-03-18 05:51:27.414 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:28.314 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:51:28.314 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:28.314 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:51:28.314 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 910 ms to get response, and 918 ms overall
17-03-18 05:51:28.314 -07 000000629 INF: FPGA: 'ZDACW 37977' command took 0 ms to send, 900 ms to get response, and 917 ms overall
17-03-18 05:51:28.314 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:28.314 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 890 ms to get response, and 914 ms overall
17-03-18 05:51:28.314 -07 000000424 INF: FPGA: Recv ZDACR 37977
17-03-18 05:51:28.324 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:28.324 -07 000000629 INF: Z Motor: MoveAbsStepped took 926 ms (did NOT wait for settling yet))
17-03-18 05:51:28.364 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:28.364 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:51:28.374 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:28.374 -07 000000437 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:28.374 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:51:28.374 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 915 ms, distance = 0.840 mm, average velocity = 0.918 mm/sec
17-03-18 05:51:28.624 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.018051,
17-03-18 05:51:29.324 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:29.324 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:51:29.334 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.334 -07 000000437 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:29.364 -07 000000437 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:29.364 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:29.364 -07 000000437 INF: Y Motor: Moved to 70.6880 after 1978 ms (table move)
17-03-18 05:51:29.364 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173848 mm (DAC = 37977)
17-03-18 05:51:29.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.364 -07 000000502 INF: FPGA: Recv ZSGSRD 36349
17-03-18 05:51:29.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:51:29.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.374 -07 000000437 INF: FPGA: Recv ZSGSRD 36355
17-03-18 05:51:29.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36353
17-03-18 05:51:29.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.394 -07 000000590 INF: FPGA: Recv ZSGSRD 36349
17-03-18 05:51:29.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.404 -07 000000502 INF: FPGA: Recv ZSGSRD 36353
17-03-18 05:51:29.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.414 -07 000000424 INF: FPGA: Recv ZSGSRD 36353
17-03-18 05:51:29.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.424 -07 000000590 INF: FPGA: Recv ZSGSRD 36354
17-03-18 05:51:29.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36345
17-03-18 05:51:29.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.444 -07 000000590 INF: FPGA: Recv ZSGSRD 36354
17-03-18 05:51:29.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:29.454 -07 000000447 INF: FPGA: Recv ZSGSRD 36354
17-03-18 05:51:29.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.464 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:29.464 -07 000000590 INF: FPGA: Recv ZPIEZORD 32470
17-03-18 05:51:29.474 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.795 V. Piezo Error = -8.6 V.
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36352 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36353 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36345 (-172.9 uncal um), Max = 36355 (-173.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36352, posNoise = 3, negNoise = 7
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: After move to -0.173848, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: Settle wait time = 1973 ms, measure time = 104 ms (allowed 150 ms), total time = 2077 ms
17-03-18 05:51:29.474 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:29.524 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2463 ms
17-03-18 05:51:29.524 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:29.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:29.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:29.524 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:29.524 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:29.524 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:29.524 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:29.524 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:51:29.524 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:29.534 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:29.534 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:29.544 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:51:29.544 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:51:29.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:29.594 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:29.894 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:29.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:29.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:29.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:29.934 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:29.934 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:29.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:51:30.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:51:30.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:30.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:30.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:51:30.034 -07 000000424 INF: Autofocus start
17-03-18 05:51:30.034 -07 000000424 INF: MeasureProfile start
17-03-18 05:51:30.034 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:30.034 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:30.044 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:30.044 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:30.044 -07 000000424 INF: MeasureProfile done
17-03-18 05:51:30.044 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:51:30.044 -07 000000424 INF: Autofocus finished
17-03-18 05:51:30.244 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:30.244 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:30.244 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173856311788429. ----------
17-03-18 05:51:30.244 -07 000000610 INF: Cycle	142	Tile	14	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:30.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36474, sync = True, waitForSettling = True)
17-03-18 05:51:30.254 -07 000000610 INF: Z Motor: Moving to -0.166967 mm, started at -0.173856 mm, distance = 6.89 um
17-03-18 05:51:30.254 -07 000000610 INF: FPGA: Xmit ZDACW 36474\n [Z Motor]
17-03-18 05:51:30.254 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:51:30.264 -07 000000610 INF: FPGA: 'ZDACW 36474' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:30.264 -07 000000590 INF: FPGA: Recv ZDACR 36474
17-03-18 05:51:30.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:30.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.424 -07 000000502 INF: FPGA: Recv ZSGSRD 35283
17-03-18 05:51:30.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:30.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35285
17-03-18 05:51:30.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.444 -07 000000629 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:51:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.454 -07 000000437 INF: FPGA: Recv ZSGSRD 35281
17-03-18 05:51:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.464 -07 000000437 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:51:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:51:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.484 -07 000000629 INF: FPGA: Recv ZSGSRD 35284
17-03-18 05:51:30.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.494 -07 000000590 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:51:30.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.504 -07 000000502 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:51:30.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:30.514 -07 000000447 INF: FPGA: Recv ZSGSRD 35274
17-03-18 05:51:30.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:30.524 -07 000000629 INF: FPGA: Recv ZPIEZORD 31008
17-03-18 05:51:30.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:30.534 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.4 V.
17-03-18 05:51:30.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35282 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35282 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35274 (-166.1 uncal um), Max = 35287 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:51:30.534 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35282, posNoise = 5, negNoise = 8
17-03-18 05:51:30.534 -07 000000610 INF: Z Motor: After move to -0.166967, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:30.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:51:30.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:30.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:30.534 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:30.534 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:30.534 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:30.534 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:30.534 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:30.534 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:51:30.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:30.534 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:30.534 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:30.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:30.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:30.534 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:30.544 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:30.544 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:30.554 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:51:30.554 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:51:30.554 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:51:30.554 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:51:30.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36651 150\n [Camera]
17-03-18 05:51:30.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:51:31.204 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:31.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:31.204 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:31.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:31.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:31.204 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:31.214 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:31.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:51:31.214 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:31.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:51:31.394 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36651 832
17-03-18 05:51:31.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:31.604 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:51:31.604 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:51:31.604 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:31.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:51:31.614 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:51:31.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:31.614 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:31.614 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:51:31.614 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:31.624 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:51:31.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:31.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:31.764 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:31.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:31.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:31.764 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:31.884 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:31.884 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:51:31.884 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:31.884 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:31.884 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:51:31.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:31.954 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:31.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36651 150' command took 2 ms to send, 1385 ms to get response, and 1396 ms overall
17-03-18 05:51:31.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:31.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166982404796745. ------
17-03-18 05:51:31.964 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17363 mm
17-03-18 05:51:31.964 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:31.964 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:32.284 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:51:32.284 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:51:32.284 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:32.284 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:51:32.284 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:51:32.284 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:32.294 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:32.294 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:32.294 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 05:51:32.294 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 05:51:32.304 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:51:32.304 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:51:32.304 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:32.304 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:32.304 -07 000000590 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:51:32.304 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 337 ms to get response, and 345 ms overall
17-03-18 05:51:32.304 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37929, sync = True, waitForSettling = False)
17-03-18 05:51:32.304 -07 000000590 INF: Z Motor: Moving to -0.173628 mm, started at -0.166982 mm, distance = -6.65 um
17-03-18 05:51:32.314 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:32.314 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:32.314 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:32.314 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:51:32.314 -07 000000590 INF: FPGA: Xmit ZDACW 37929\n [Z Motor]
17-03-18 05:51:32.334 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:32.344 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:33.024 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:51:33.024 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:33.024 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:51:33.024 -07 000000590 INF: FPGA: 'ZDACW 37929' command took 3 ms to send, 700 ms to get response, and 712 ms overall
17-03-18 05:51:33.024 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 680 ms to get response, and 713 ms overall
17-03-18 05:51:33.024 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 670 ms to get response, and 707 ms overall
17-03-18 05:51:33.044 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:33.044 -07 000000626 INF: FPGA: Recv ZDACR 37929
17-03-18 05:51:33.054 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:51:33.054 -07 000000590 INF: Z Motor: MoveAbsStepped took 741 ms (did NOT wait for settling yet))
17-03-18 05:51:33.074 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:33.084 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:51:33.084 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:33.084 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:33.084 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:51:33.084 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 708 ms, distance = 0.845 mm, average velocity = 1.193 mm/sec
17-03-18 05:51:33.984 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.014009,
17-03-18 05:51:34.034 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:34.034 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:51:34.044 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:34.044 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:34.074 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:34.074 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:51:34.074 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1772 ms (table move)
17-03-18 05:51:34.074 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173628 mm (DAC = 37929)
17-03-18 05:51:34.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.084 -07 000000455 INF: FPGA: Recv ZSGSRD 36315
17-03-18 05:51:34.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:51:34.084 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36317
17-03-18 05:51:34.094 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.094 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.094 -07 000000590 INF: FPGA: Recv ZSGSRD 36314
17-03-18 05:51:34.104 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.104 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.104 -07 000000606 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:51:34.114 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.114 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.114 -07 000000569 INF: FPGA: Recv ZSGSRD 36316
17-03-18 05:51:34.124 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.124 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.124 -07 000000455 INF: FPGA: Recv ZSGSRD 36317
17-03-18 05:51:34.134 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.134 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.134 -07 000000606 INF: FPGA: Recv ZSGSRD 36320
17-03-18 05:51:34.144 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.144 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.144 -07 000000438 INF: FPGA: Recv ZSGSRD 36314
17-03-18 05:51:34.154 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.154 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36315
17-03-18 05:51:34.164 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.164 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:34.164 -07 000000569 INF: FPGA: Recv ZSGSRD 36320
17-03-18 05:51:34.174 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.174 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:34.174 -07 000000438 INF: FPGA: Recv ZPIEZORD 32421
17-03-18 05:51:34.184 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.6 V.
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36317 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36314 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36317, posNoise = 5, negNoise = 3
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: After move to -0.173628, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: Settle wait time = 1768 ms, measure time = 103 ms (allowed 150 ms), total time = 1871 ms
17-03-18 05:51:34.184 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:34.234 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2268 ms
17-03-18 05:51:34.234 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:34.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:34.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:34.234 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:34.234 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:34.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:34.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:34.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:34.234 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:34.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:34.244 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:34.244 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:51:34.244 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:51:34.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:34.294 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:34.594 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:34.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:34.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:34.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 05:51:34.634 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:34.634 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:34.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:51:34.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:51:34.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:34.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:34.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:51:34.734 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:34.734 -07 000000502 INF: Autofocus start
17-03-18 05:51:34.734 -07 000000502 INF: MeasureProfile start
17-03-18 05:51:34.734 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:34.744 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:34.744 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:34.744 -07 000000502 INF: MeasureProfile done
17-03-18 05:51:34.744 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:51:34.744 -07 000000502 INF: Autofocus finished
17-03-18 05:51:34.944 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:34.944 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:34.954 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173631464363468. ----------
17-03-18 05:51:34.954 -07 000000610 INF: Cycle	142	Tile	15	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:34.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36426, sync = True, waitForSettling = True)
17-03-18 05:51:34.954 -07 000000610 INF: Z Motor: Moving to -0.166748 mm, started at -0.173631 mm, distance = 6.88 um
17-03-18 05:51:34.954 -07 000000610 INF: FPGA: Xmit ZDACW 36426\n [Z Motor]
17-03-18 05:51:34.954 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:51:34.964 -07 000000610 INF: FPGA: 'ZDACW 36426' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:34.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:34.964 -07 000000569 INF: FPGA: Recv ZDACR 36426
17-03-18 05:51:34.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:34.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:35.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.124 -07 000000455 INF: FPGA: Recv ZSGSRD 35246
17-03-18 05:51:35.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.134 -07 000000626 INF: FPGA: Recv ZSGSRD 35249
17-03-18 05:51:35.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.144 -07 000000462 INF: FPGA: Recv ZSGSRD 35245
17-03-18 05:51:35.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35248
17-03-18 05:51:35.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.164 -07 000000590 INF: FPGA: Recv ZSGSRD 35245
17-03-18 05:51:35.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35246
17-03-18 05:51:35.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.184 -07 000000462 INF: FPGA: Recv ZSGSRD 35252
17-03-18 05:51:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.194 -07 000000569 INF: FPGA: Recv ZSGSRD 35247
17-03-18 05:51:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.204 -07 000000438 INF: FPGA: Recv ZSGSRD 35254
17-03-18 05:51:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:35.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35244
17-03-18 05:51:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:35.224 -07 000000438 INF: FPGA: Recv ZPIEZORD 30982
17-03-18 05:51:35.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:35.234 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.4 V.
17-03-18 05:51:35.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35248 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35246 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35244 (-165.9 uncal um), Max = 35254 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:51:35.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35248, posNoise = 6, negNoise = 4
17-03-18 05:51:35.234 -07 000000610 INF: Z Motor: After move to -0.166748, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:35.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:51:35.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:35.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:35.234 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:35.234 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:35.234 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:35.234 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:35.234 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:35.234 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:35.234 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:35.234 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:35.234 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:35.234 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:35.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:35.244 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:35.244 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:51:35.244 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:35.254 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:51:35.254 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:51:35.254 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:51:35.254 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:51:35.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36602 150\n [Camera]
17-03-18 05:51:35.464 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:51:35.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:35.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:35.904 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:35.904 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:35.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:35.914 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:35.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:35.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:51:35.914 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:35.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-18 05:51:36.094 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36602 832
17-03-18 05:51:36.244 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:36.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:51:36.304 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:51:36.304 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:36.314 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:36.314 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:51:36.314 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:51:36.314 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:51:36.314 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:36.314 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:36.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:51:36.464 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:36.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:36.464 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:36.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:36.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:36.464 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:36.464 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:51:36.464 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:36.464 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:36.464 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:51:36.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:36.654 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:36.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36602 150' command took 2 ms to send, 1386 ms to get response, and 1396 ms overall
17-03-18 05:51:36.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:36.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.166763981583925. ------
17-03-18 05:51:36.664 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17318 mm
17-03-18 05:51:36.664 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:36.664 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:36.664 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:51:36.664 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:51:36.664 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37831, sync = True, waitForSettling = False)
17-03-18 05:51:36.664 -07 000000590 INF: Z Motor: Moving to -0.173179 mm, started at -0.166764 mm, distance = -6.42 um
17-03-18 05:51:36.664 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:36.674 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:36.674 -07 000000590 INF: FPGA: Xmit ZDACW 37831\n [Z Motor]
17-03-18 05:51:36.674 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:51:36.684 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:36.684 -07 000000590 INF: FPGA: 'ZDACW 37831' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:51:36.684 -07 000000474 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:51:36.694 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:36.694 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:51:36.694 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:36.694 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:36.694 -07 000000502 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:51:36.704 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:36.704 -07 000000569 INF: FPGA: Recv ZDACR 37831
17-03-18 05:51:36.714 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:36.714 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:36.714 -07 000000590 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:51:36.874 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:51:36.874 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:51:36.874 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:36.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:51:36.874 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:51:36.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:36.874 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:36.874 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:36.874 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:51:36.884 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:51:36.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:36.894 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:36.894 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 05:51:37.094 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:51:37.094 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 05:51:37.144 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:37.144 -07 000000461 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:51:37.154 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:37.154 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:37.154 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:51:37.154 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.110 mm/sec
17-03-18 05:51:38.104 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:38.104 -07 000000438 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:51:38.114 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.114 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:38.144 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:38.144 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:38.144 -07 000000502 INF: Y Motor: Moved to 72.3486 after 1477 ms (table move)
17-03-18 05:51:38.144 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173179 mm (DAC = 37831)
17-03-18 05:51:38.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.154 -07 000000438 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:51:38.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:51:38.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.154 -07 000000461 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:51:38.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:51:38.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.164 -07 000000606 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:51:38.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.174 -07 000000438 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:51:38.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36243
17-03-18 05:51:38.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.194 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36240
17-03-18 05:51:38.204 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.204 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.204 -07 000000438 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:51:38.214 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.214 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36254
17-03-18 05:51:38.224 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.224 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.224 -07 000000606 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:51:38.234 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.234 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:38.234 -07 000000606 INF: FPGA: Recv ZSGSRD 36246
17-03-18 05:51:38.244 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.244 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:38.244 -07 000000502 INF: FPGA: Recv ZPIEZORD 32344
17-03-18 05:51:38.254 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.6 V.
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36247 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36247 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36240 (-172.3 uncal um), Max = 36254 (-172.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36247, posNoise = 7, negNoise = 7
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: After move to -0.173179, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: Settle wait time = 1480 ms, measure time = 104 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:51:38.254 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:38.304 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 05:51:38.304 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:38.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:38.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:38.304 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:38.304 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:38.304 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:38.304 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:38.304 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:38.304 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:38.314 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:38.314 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:38.314 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:51:38.324 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:51:38.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:38.364 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:38.664 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:38.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:38.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:38.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:51:38.704 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:38.704 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:38.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:51:38.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:51:38.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:38.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:51:38.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 05:51:38.904 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:38.904 -07 000000606 INF: Autofocus start
17-03-18 05:51:38.904 -07 000000606 INF: MeasureProfile start
17-03-18 05:51:38.904 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:38.914 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:38.914 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:38.914 -07 000000606 INF: MeasureProfile done
17-03-18 05:51:38.914 -07 000000606 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:51:38.914 -07 000000606 INF: Autofocus finished
17-03-18 05:51:39.114 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:39.114 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:51:39.124 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173181769513544. ----------
17-03-18 05:51:39.124 -07 000000610 INF: Cycle	142	Tile	16	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:39.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-18 05:51:39.124 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173182 mm, distance = 6.72 um
17-03-18 05:51:39.124 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-18 05:51:39.124 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:51:39.134 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:39.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:39.134 -07 000000438 INF: FPGA: Recv ZDACR 36364
17-03-18 05:51:39.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35206
17-03-18 05:51:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.304 -07 000000437 INF: FPGA: Recv ZSGSRD 35208
17-03-18 05:51:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35201
17-03-18 05:51:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.324 -07 000000447 INF: FPGA: Recv ZSGSRD 35202
17-03-18 05:51:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.344 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.000345,
17-03-18 05:51:39.344 -07 000000424 INF: FPGA: Recv ZSGSRD 35203
17-03-18 05:51:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.354 -07 000000447 INF: FPGA: Recv ZSGSRD 35207
17-03-18 05:51:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35204
17-03-18 05:51:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.414 -07 000000629 INF: FPGA: Recv ZSGSRD 35201
17-03-18 05:51:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:39.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.424 -07 000000455 INF: FPGA: Recv ZSGSRD 35204
17-03-18 05:51:39.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:39.434 -07 000000438 INF: FPGA: Recv ZSGSRD 35204
17-03-18 05:51:39.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:39.444 -07 000000606 INF: FPGA: Recv ZPIEZORD 30939
17-03-18 05:51:39.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:39.454 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-18 05:51:39.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35201 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:51:39.454 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 4, negNoise = 3
17-03-18 05:51:39.454 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:39.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-18 05:51:39.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:39.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:39.454 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:39.454 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:39.454 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:39.454 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:39.454 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:39.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:39.454 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:39.454 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:39.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:39.454 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:39.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:39.464 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:39.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:51:39.464 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:39.474 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:51:39.474 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:51:39.474 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:51:39.474 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:51:39.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36541 150\n [Camera]
17-03-18 05:51:39.674 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:40.124 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:40.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:40.124 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:40.124 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:40.124 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:51:40.124 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:40.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:40.124 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:40.124 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:40.124 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:51:40.314 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36541 832
17-03-18 05:51:40.464 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:40.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:51:40.504 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:51:40.504 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:40.514 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:40.514 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:51:40.514 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:51:40.514 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:40.514 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:40.514 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:51:40.514 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:51:40.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:40.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:40.684 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:40.684 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:40.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:51:40.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:40.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:40.684 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:40.684 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:40.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:51:40.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:40.874 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:40.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36541 150' command took 2 ms to send, 1391 ms to get response, and 1396 ms overall
17-03-18 05:51:40.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:40.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166481316249688. ------
17-03-18 05:51:40.874 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:40.874 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17293 mm
17-03-18 05:51:40.874 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:40.884 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:51:40.884 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:51:40.884 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:40.884 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:40.884 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:40.884 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37776, sync = True, waitForSettling = False)
17-03-18 05:51:40.884 -07 000000606 INF: Z Motor: Moving to -0.172927 mm, started at -0.166481 mm, distance = -6.45 um
17-03-18 05:51:40.884 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:51:40.894 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:40.894 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:40.894 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:40.894 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:40.894 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:51:40.904 -07 000000606 INF: FPGA: Xmit ZDACW 37776\n [Z Motor]
17-03-18 05:51:40.904 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:51:40.914 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:40.914 -07 000000606 INF: FPGA: 'ZDACW 37776' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:51:40.924 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:40.924 -07 000000447 INF: FPGA: Recv ZDACR 37776
17-03-18 05:51:40.934 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:40.934 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:51:41.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:51:41.084 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:51:41.084 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:41.084 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:51:41.084 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:51:41.084 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:41.084 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:41.094 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:51:41.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:51:41.094 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:51:41.104 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:41.104 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 206 ms to get response, and 225 ms overall
17-03-18 05:51:41.284 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 05:51:41.284 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:51:41.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:41.344 -07 000000455 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:51:41.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:51:41.344 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:41.344 -07 000000424 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:51:41.344 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-18 05:51:41.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:42.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:42.294 -07 000000438 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:51:42.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:42.304 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:42.334 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:42.334 -07 000000424 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:42.334 -07 000000424 INF: Y Motor: Moved to 73.1753 after 1452 ms (table move)
17-03-18 05:51:42.334 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172927 mm (DAC = 37776)
17-03-18 05:51:42.334 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36214
17-03-18 05:51:42.344 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:42.344 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36215
17-03-18 05:51:42.354 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.354 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.354 -07 000000438 INF: FPGA: Recv ZSGSRD 36212
17-03-18 05:51:42.364 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36203
17-03-18 05:51:42.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.374 -07 000000438 INF: FPGA: Recv ZSGSRD 36215
17-03-18 05:51:42.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.384 -07 000000455 INF: FPGA: Recv ZSGSRD 36212
17-03-18 05:51:42.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.394 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36205
17-03-18 05:51:42.404 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.404 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.404 -07 000000455 INF: FPGA: Recv ZSGSRD 36208
17-03-18 05:51:42.414 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.414 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.414 -07 000000438 INF: FPGA: Recv ZSGSRD 36207
17-03-18 05:51:42.424 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.424 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:42.424 -07 000000455 INF: FPGA: Recv ZSGSRD 36216
17-03-18 05:51:42.434 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.434 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:42.434 -07 000000455 INF: FPGA: Recv ZPIEZORD 32304
17-03-18 05:51:42.444 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.6 V.
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36211 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36212 (-172.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36203 (-172.0 uncal um), Max = 36216 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36211, posNoise = 5, negNoise = 8
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: After move to -0.172927, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:51:42.444 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:42.494 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:51:42.494 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:42.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:42.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:42.494 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:42.494 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:42.494 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:42.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:42.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:42.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:42.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:42.504 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:42.504 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:51:42.504 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:51:42.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:42.564 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:42.854 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:42.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:42.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:42.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 05:51:42.894 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:42.894 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:42.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:51:42.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:51:42.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:42.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:51:42.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:51:42.994 -07 000000438 INF: Autofocus start
17-03-18 05:51:42.994 -07 000000438 INF: MeasureProfile start
17-03-18 05:51:42.994 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:42.994 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:43.004 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:43.004 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:43.004 -07 000000438 INF: MeasureProfile done
17-03-18 05:51:43.004 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:51:43.004 -07 000000438 INF: Autofocus finished
17-03-18 05:51:43.204 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:43.204 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:43.204 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172950497876441. ----------
17-03-18 05:51:43.204 -07 000000610 INF: Cycle	142	Tile	17	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:43.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36291, sync = True, waitForSettling = True)
17-03-18 05:51:43.214 -07 000000610 INF: Z Motor: Moving to -0.166130 mm, started at -0.172950 mm, distance = 6.82 um
17-03-18 05:51:43.214 -07 000000610 INF: FPGA: Xmit ZDACW 36291\n [Z Motor]
17-03-18 05:51:43.214 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:51:43.224 -07 000000610 INF: FPGA: 'ZDACW 36291' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:43.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:43.224 -07 000000629 INF: FPGA: Recv ZDACR 36291
17-03-18 05:51:43.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:43.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.384 -07 000000424 INF: FPGA: Recv ZSGSRD 35150
17-03-18 05:51:43.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:43.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35150
17-03-18 05:51:43.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.404 -07 000000629 INF: FPGA: Recv ZSGSRD 35148
17-03-18 05:51:43.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:51:43.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35152
17-03-18 05:51:43.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:43.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35151
17-03-18 05:51:43.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35148
17-03-18 05:51:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.464 -07 000000629 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:51:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.474 -07 000000438 INF: FPGA: Recv ZSGSRD 35151
17-03-18 05:51:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:43.484 -07 000000629 INF: FPGA: Recv ZSGSRD 35152
17-03-18 05:51:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:43.494 -07 000000438 INF: FPGA: Recv ZPIEZORD 30901
17-03-18 05:51:43.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:43.504 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.4 V.
17-03-18 05:51:43.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35150 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35150 (-165.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35148 (-165.3 uncal um), Max = 35152 (-165.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:51:43.504 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35150, posNoise = 2, negNoise = 2
17-03-18 05:51:43.504 -07 000000610 INF: Z Motor: After move to -0.166130, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:43.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 05:51:43.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:43.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:43.504 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:43.504 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:43.504 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:43.504 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:43.504 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:43.504 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:43.504 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:51:43.504 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:43.504 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:43.504 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:43.514 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:43.514 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:43.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:51:43.514 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:43.524 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:51:43.524 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:51:43.524 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:51:43.524 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:51:43.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36467 150\n [Camera]
17-03-18 05:51:43.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:44.174 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:44.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:44.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:44.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:44.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:51:44.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:44.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:44.174 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:44.174 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:44.174 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 05:51:44.364 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36467 832
17-03-18 05:51:44.514 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:44.564 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:51:44.564 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:51:44.564 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:44.564 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:51:44.564 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:51:44.564 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:44.574 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:44.574 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:44.574 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:51:44.574 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:51:44.734 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.004458,
17-03-18 05:51:44.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:44.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:44.734 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:44.734 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:44.734 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 05:51:44.734 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:44.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:44.734 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:44.734 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:44.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 05:51:44.924 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:51:44.924 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:44.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36467 150' command took 2 ms to send, 1384 ms to get response, and 1397 ms overall
17-03-18 05:51:44.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:44.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166134408794033. ------
17-03-18 05:51:44.924 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:44.924 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17202 mm
17-03-18 05:51:44.924 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:44.934 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:44.934 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:51:44.934 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:44.934 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37578, sync = True, waitForSettling = False)
17-03-18 05:51:44.934 -07 000000606 INF: Z Motor: Moving to -0.172021 mm, started at -0.166134 mm, distance = -5.89 um
17-03-18 05:51:44.934 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:51:44.934 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:51:44.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:44.944 -07 000000569 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:51:44.954 -07 000000606 INF: FPGA: Xmit ZDACW 37578\n [Z Motor]
17-03-18 05:51:44.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:51:44.954 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:44.954 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:44.954 -07 000000424 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:51:44.964 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:45.124 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:51:45.124 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:51:45.124 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:45.124 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:51:45.124 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:51:45.124 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:45.124 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:45.134 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:51:45.134 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:45.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:51:45.814 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:51:45.814 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:45.814 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:51:45.814 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 871 ms to get response, and 878 ms overall
17-03-18 05:51:45.814 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 841 ms to get response, and 860 ms overall
17-03-18 05:51:45.814 -07 000000606 INF: FPGA: 'ZDACW 37578' command took 0 ms to send, 850 ms to get response, and 875 ms overall
17-03-18 05:51:45.814 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:45.834 -07 000000437 INF: FPGA: Recv ZDACR 37578
17-03-18 05:51:45.834 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:51:45.834 -07 000000606 INF: Z Motor: MoveAbsStepped took 901 ms (did NOT wait for settling yet))
17-03-18 05:51:45.874 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:45.874 -07 000000590 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:51:45.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:45.884 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:45.884 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:51:45.884 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 860 ms, distance = 0.847 mm, average velocity = 0.985 mm/sec
17-03-18 05:51:46.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:46.834 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:46.834 -07 000000437 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:51:46.844 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:46.844 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:46.864 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:46.864 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:46.864 -07 000000424 INF: Y Motor: Moved to 74.0073 after 1929 ms (table move)
17-03-18 05:51:46.864 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172021 mm (DAC = 37578)
17-03-18 05:51:46.864 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.874 -07 000000569 INF: FPGA: Recv ZSGSRD 36073
17-03-18 05:51:46.874 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:51:46.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.874 -07 000000424 INF: FPGA: Recv ZSGSRD 36071
17-03-18 05:51:46.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:51:46.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.884 -07 000000437 INF: FPGA: Recv ZSGSRD 36061
17-03-18 05:51:46.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.894 -07 000000447 INF: FPGA: Recv ZSGSRD 36066
17-03-18 05:51:46.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.904 -07 000000569 INF: FPGA: Recv ZSGSRD 36065
17-03-18 05:51:46.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.914 -07 000000502 INF: FPGA: Recv ZSGSRD 36066
17-03-18 05:51:46.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.924 -07 000000438 INF: FPGA: Recv ZSGSRD 36075
17-03-18 05:51:46.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.934 -07 000000424 INF: FPGA: Recv ZSGSRD 36070
17-03-18 05:51:46.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.944 -07 000000438 INF: FPGA: Recv ZSGSRD 36071
17-03-18 05:51:46.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.954 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:46.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36064
17-03-18 05:51:46.964 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.964 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:46.964 -07 000000438 INF: FPGA: Recv ZPIEZORD 32106
17-03-18 05:51:46.974 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.8 V.
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36068 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36061 (-171.1 uncal um), Max = 36075 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36068, posNoise = 7, negNoise = 7
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: After move to -0.172021, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: Settle wait time = 1934 ms, measure time = 101 ms (allowed 150 ms), total time = 2035 ms
17-03-18 05:51:46.974 -07 000000462 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:47.024 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2090 ms
17-03-18 05:51:47.024 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:47.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:47.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:47.024 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:47.024 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:47.024 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:47.024 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:47.024 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:47.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:47.034 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:47.034 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:47.044 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:51:47.044 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:51:47.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:47.084 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:47.384 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:47.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:47.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:47.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 05:51:47.424 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:47.424 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:47.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:51:47.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:51:47.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:47.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:51:47.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:51:47.524 -07 000000437 INF: Autofocus start
17-03-18 05:51:47.524 -07 000000437 INF: MeasureProfile start
17-03-18 05:51:47.524 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:47.524 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:47.534 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:47.534 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:47.534 -07 000000437 INF: MeasureProfile done
17-03-18 05:51:47.534 -07 000000437 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:51:47.534 -07 000000437 INF: Autofocus finished
17-03-18 05:51:47.734 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:47.734 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:47.734 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172031835540169. ----------
17-03-18 05:51:47.744 -07 000000610 INF: Cycle	142	Tile	18	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:47.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36111, sync = True, waitForSettling = True)
17-03-18 05:51:47.744 -07 000000610 INF: Z Motor: Moving to -0.165306 mm, started at -0.172032 mm, distance = 6.73 um
17-03-18 05:51:47.744 -07 000000610 INF: FPGA: Xmit ZDACW 36111\n [Z Motor]
17-03-18 05:51:47.744 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 05:51:47.754 -07 000000610 INF: FPGA: 'ZDACW 36111' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:51:47.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:47.754 -07 000000438 INF: FPGA: Recv ZDACR 36111
17-03-18 05:51:47.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:47.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.914 -07 000000447 INF: FPGA: Recv ZSGSRD 35024
17-03-18 05:51:47.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:47.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.924 -07 000000474 INF: FPGA: Recv ZSGSRD 35026
17-03-18 05:51:47.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.934 -07 000000474 INF: FPGA: Recv ZSGSRD 35022
17-03-18 05:51:47.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.944 -07 000000447 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:51:47.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.954 -07 000000447 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:51:47.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35020
17-03-18 05:51:47.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.974 -07 000000590 INF: FPGA: Recv ZSGSRD 35018
17-03-18 05:51:47.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.984 -07 000000438 INF: FPGA: Recv ZSGSRD 35025
17-03-18 05:51:47.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:47.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:47.994 -07 000000569 INF: FPGA: Recv ZSGSRD 35029
17-03-18 05:51:48.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:48.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:48.004 -07 000000606 INF: FPGA: Recv ZSGSRD 35022
17-03-18 05:51:48.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:48.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:48.014 -07 000000606 INF: FPGA: Recv ZPIEZORD 30731
17-03-18 05:51:48.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:48.024 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.5 V.
17-03-18 05:51:48.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35024 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35024 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35018 (-164.4 uncal um), Max = 35029 (-164.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:51:48.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35024, posNoise = 5, negNoise = 6
17-03-18 05:51:48.024 -07 000000610 INF: Z Motor: After move to -0.165306, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:48.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:51:48.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:48.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:48.034 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:48.034 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:48.034 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:48.034 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:48.034 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:48.034 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:51:48.034 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:48.034 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:51:48.034 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:48.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:48.034 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:51:48.034 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:48.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:51:48.034 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:48.044 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:51:48.044 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:51:48.044 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:51:48.044 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:51:48.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36288 150\n [Camera]
17-03-18 05:51:48.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:48.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:51:48.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:51:48.694 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:48.694 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:48.694 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:51:48.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:51:48.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:51:48.694 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:48.694 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:48.694 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 05:51:48.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36288 832
17-03-18 05:51:49.034 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:49.094 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:51:49.104 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:51:49.104 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:49.104 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:51:49.104 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:51:49.104 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:49.104 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:49.104 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:51:49.104 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:49.114 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:51:49.254 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:49.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:49.254 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:49.254 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:49.254 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 05:51:49.254 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:49.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:49.254 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:49.254 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:49.254 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 05:51:49.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:49.444 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:49.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36288 150' command took 2 ms to send, 1384 ms to get response, and 1397 ms overall
17-03-18 05:51:49.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:51:49.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165324958064171. ------
17-03-18 05:51:49.444 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:49.444 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17166 mm
17-03-18 05:51:49.444 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:49.454 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:49.454 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:51:49.454 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:51:49.454 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:49.454 -07 000000606 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:51:49.454 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37499, sync = True, waitForSettling = False)
17-03-18 05:51:49.454 -07 000000438 INF: Z Motor: Moving to -0.171659 mm, started at -0.165325 mm, distance = -6.33 um
17-03-18 05:51:49.464 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:49.464 -07 000000502 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:51:49.474 -07 000000438 INF: FPGA: Xmit ZDACW 37499\n [Z Motor]
17-03-18 05:51:49.474 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:51:49.474 -07 000000606 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:49.474 -07 000000606 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:51:49.474 -07 000000606 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:51:49.474 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:51:49.484 -07 000000438 INF: FPGA: 'ZDACW 37499' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:51:49.484 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:49.484 -07 000000447 INF: FPGA: Recv ZDACR 37499
17-03-18 05:51:49.494 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:49.494 -07 000000438 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 05:51:49.494 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:51:49.654 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:51:49.654 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:51:49.654 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:49.654 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:49.654 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-18 05:51:49.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:51:49.654 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:51:49.654 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:49.664 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:51:49.664 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:51:49.664 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:51:49.674 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:51:49.864 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:51:49.864 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:51:49.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:49.904 -07 000000474 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:51:49.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:49.914 -07 000000606 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:49.914 -07 000000606 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:51:49.914 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 05:51:50.094 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.981281,
17-03-18 05:51:50.864 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:50.864 -07 000000424 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:51:50.874 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.874 -07 000000606 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:50.894 -07 000000606 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:50.894 -07 000000606 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:51:50.894 -07 000000606 INF: Y Motor: Moved to 74.8311 after 1436 ms (table move)
17-03-18 05:51:50.894 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171659 mm (DAC = 37499)
17-03-18 05:51:50.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.894 -07 000000455 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:51:50.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:51:50.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.904 -07 000000629 INF: FPGA: Recv ZSGSRD 36008
17-03-18 05:51:50.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.914 -07 000000438 INF: FPGA: Recv ZSGSRD 36016
17-03-18 05:51:50.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.924 -07 000000474 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:51:50.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.934 -07 000000461 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:51:50.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.944 -07 000000569 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:51:50.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.954 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.954 -07 000000502 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:51:50.964 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.964 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.964 -07 000000424 INF: FPGA: Recv ZSGSRD 36010
17-03-18 05:51:50.974 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.974 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.974 -07 000000455 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:51:50.984 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.984 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:50.984 -07 000000437 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:51:50.994 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:50.994 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:50.994 -07 000000438 INF: FPGA: Recv ZPIEZORD 32083
17-03-18 05:51:51.004 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.7 V.
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36008 (-170.8 uncal um), Max = 36016 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 4, negNoise = 4
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: After move to -0.171659, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-18 05:51:51.004 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:51.054 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 05:51:51.054 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:51.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:51.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:51.054 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:51.054 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:51.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:51.054 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:51.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:51:51.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:51.064 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:51.064 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:51.064 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:51:51.064 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:51:51.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:51.114 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:51.414 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:51.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:51.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:51.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 05:51:51.454 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:51.454 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:51.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:51:51.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:51:51.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:51.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:51:51.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:51:51.654 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:51.654 -07 000000502 INF: Autofocus start
17-03-18 05:51:51.654 -07 000000502 INF: MeasureProfile start
17-03-18 05:51:51.654 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:51.664 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:51.664 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:51.664 -07 000000502 INF: MeasureProfile done
17-03-18 05:51:51.664 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:51:51.664 -07 000000502 INF: Autofocus finished
17-03-18 05:51:51.804 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:51.864 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:51:51.864 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:51:51.874 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171672079660231. ----------
17-03-18 05:51:51.874 -07 000000610 INF: Cycle	142	Tile	19	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:51:51.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36014, sync = True, waitForSettling = True)
17-03-18 05:51:51.874 -07 000000610 INF: Z Motor: Moving to -0.164862 mm, started at -0.171672 mm, distance = 6.81 um
17-03-18 05:51:51.874 -07 000000610 INF: FPGA: Xmit ZDACW 36014\n [Z Motor]
17-03-18 05:51:51.874 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:51:51.884 -07 000000610 INF: FPGA: 'ZDACW 36014' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:51.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:51.884 -07 000000438 INF: FPGA: Recv ZDACR 36014
17-03-18 05:51:51.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:51.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:51:52.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.044 -07 000000502 INF: FPGA: Recv ZSGSRD 34955
17-03-18 05:51:52.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:51:52.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.054 -07 000000606 INF: FPGA: Recv ZSGSRD 34954
17-03-18 05:51:52.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.064 -07 000000590 INF: FPGA: Recv ZSGSRD 34952
17-03-18 05:51:52.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.074 -07 000000447 INF: FPGA: Recv ZSGSRD 34955
17-03-18 05:51:52.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.084 -07 000000569 INF: FPGA: Recv ZSGSRD 34955
17-03-18 05:51:52.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.094 -07 000000606 INF: FPGA: Recv ZSGSRD 34952
17-03-18 05:51:52.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.104 -07 000000455 INF: FPGA: Recv ZSGSRD 34961
17-03-18 05:51:52.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.114 -07 000000382 INF: FPGA: Recv ZSGSRD 34956
17-03-18 05:51:52.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.124 -07 000000382 INF: FPGA: Recv ZSGSRD 34956
17-03-18 05:51:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:52.134 -07 000000382 INF: FPGA: Recv ZSGSRD 34949
17-03-18 05:51:52.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:52.144 -07 000000606 INF: FPGA: Recv ZPIEZORD 30653
17-03-18 05:51:52.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:52.154 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.495 V. Piezo Error = -9.5 V.
17-03-18 05:51:52.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34954 (-164.0 uncal um), Error = 0.8 uncal um, Median = 34955 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34949 (-164.0 uncal um), Max = 34961 (-164.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:51:52.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34954, posNoise = 7, negNoise = 5
17-03-18 05:51:52.154 -07 000000610 INF: Z Motor: After move to -0.164862, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:52.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:51:52.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:52.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:52.154 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:51:52.154 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:51:52.154 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:51:52.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:52.154 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:52.154 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:52.154 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:51:52.154 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:51:52.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:52.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:51:52.164 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:51:52.164 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:51:52.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:51:52.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:51:52.174 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:51:52.174 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:51:52.174 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:51:52.174 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:51:52.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36191 150\n [Camera]
17-03-18 05:51:52.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:51:52.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 643
17-03-18 05:51:52.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 643
17-03-18 05:51:52.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:52.824 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:52.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 05:51:52.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 643
17-03-18 05:51:52.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 643
17-03-18 05:51:52.824 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:52.824 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:52.824 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 05:51:53.014 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36191 832
17-03-18 05:51:53.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:51:53.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:51:53.224 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:51:53.224 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:53.224 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:53.224 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:51:53.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:51:53.224 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:51:53.224 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:53.234 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:53.234 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:51:53.374 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:51:53.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:51:53.374 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:51:53.514 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:51:53.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:51:53.524 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:51:53.524 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:51:53.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 05:51:53.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:51:53.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:51:53.564 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:51:53.564 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:51:53.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36191 150' command took 2 ms to send, 1389 ms to get response, and 1396 ms overall
17-03-18 05:51:53.924 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:51:53.924 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:51:53.924 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:53.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:51:53.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:51:53.924 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:53.924 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:53.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:51:53.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 550 ms.
17-03-18 05:51:53.924 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:51:53.934 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:51:53.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:51:53.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:51:54.014 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:51:54.014 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:51:54.014 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:51:54.024 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 05:51:54.024 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:51:54.024 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:51:54.524 -07 000000437 INF: FPGA: Recv EMIN
17-03-18 05:51:54.524 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-18 05:51:54.524 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:51:54.524 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 05:51:54.534 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:54.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:51:54.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164875263214247. ------
17-03-18 05:51:54.534 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:54.534 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 05:51:54.534 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:51:54.544 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:54.544 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:54.544 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30427, sync = True, waitForSettling = False)
17-03-18 05:51:54.544 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:51:54.544 -07 000000437 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:51:54.544 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:51:54.544 -07 000000606 INF: Z Motor: Moving to -0.139286 mm, started at -0.164875 mm, distance = 25.59 um
17-03-18 05:51:54.554 -07 000000606 INF: FPGA: Xmit ZDACW 30427\n [Z Motor]
17-03-18 05:51:54.554 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:51:54.564 -07 000000606 INF: FPGA: 'ZDACW 30427' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:51:54.564 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:54.564 -07 000000590 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:51:54.574 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:51:54.574 -07 000000437 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:54.574 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:51:54.574 -07 000000424 INF: FPGA: Recv ZDACR 30427
17-03-18 05:51:54.574 -07 000000437 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:51:54.574 -07 000000437 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:51:54.584 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:51:54.584 -07 000000606 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:51:54.584 -07 000000437 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:51:54.744 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:51:54.744 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:51:55.454 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.993549,
17-03-18 05:51:56.204 -07 000000579 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 05:51:56.204 -07 000000437 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1629 ms overall
17-03-18 05:51:56.204 -07 000000437 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:51:56.204 -07 000000437 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:51:56.204 -07 000000437 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1629 ms, distance = 14.918 mm, average velocity = 9.158 mm/sec
17-03-18 05:51:56.804 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:51:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:51:59.054 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:51:59.054 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:51:59.064 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.064 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:51:59.104 -07 000000437 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:51:59.104 -07 000000437 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:51:59.104 -07 000000437 INF: Y Motor: Moved to 59.9102 after 4560 ms
17-03-18 05:51:59.104 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139286 mm (DAC = 30427)
17-03-18 05:51:59.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.104 -07 000000579 INF: FPGA: Recv ZSGSRD 30976
17-03-18 05:51:59.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:51:59.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.114 -07 000000437 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:51:59.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.124 -07 000000606 INF: FPGA: Recv ZSGSRD 30967
17-03-18 05:51:59.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.134 -07 000000502 INF: FPGA: Recv ZSGSRD 30966
17-03-18 05:51:59.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.144 -07 000000424 INF: FPGA: Recv ZSGSRD 30977
17-03-18 05:51:59.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.154 -07 000000502 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:51:59.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.164 -07 000000561 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:51:59.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.174 -07 000000606 INF: FPGA: Recv ZSGSRD 30976
17-03-18 05:51:59.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.184 -07 000000606 INF: FPGA: Recv ZSGSRD 30978
17-03-18 05:51:59.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.194 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:51:59.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:51:59.204 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.204 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:51:59.204 -07 000000561 INF: FPGA: Recv ZPIEZORD 26441
17-03-18 05:51:59.214 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.9 V.
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30973 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30973 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30966 (-138.5 uncal um), Max = 30978 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30973, posNoise = 5, negNoise = 7
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: After move to -0.139286, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: Settle wait time = 4564 ms, measure time = 105 ms (allowed 150 ms), total time = 4669 ms
17-03-18 05:51:59.214 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:51:59.264 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4722 ms
17-03-18 05:51:59.264 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:51:59.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:51:59.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:51:59.264 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:51:59.264 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:51:59.264 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:51:59.264 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:51:59.264 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:51:59.264 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:51:59.294 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:51:59.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:51:59.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:51:59.294 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:51:59.314 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:51:59.314 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 05:51:59.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:51:59.354 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:51:59.654 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:51:59.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:51:59.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:51:59.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:51:59.694 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:51:59.694 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:51:59.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:51:59.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:51:59.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:51:59.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:51:59.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:51:59.794 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:51:59.794 -07 000000455 INF: Image SNR check: start
17-03-18 05:51:59.794 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:51:59.804 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:51:59.804 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:51:59.804 -07 000000455 INF: Image SNR check: pass  [peak (Max-Min)=106.88]
17-03-18 05:51:59.804 -07 000000455 INF: Autofocus start
17-03-18 05:51:59.804 -07 000000455 INF: MeasureProfile start
17-03-18 05:51:59.824 -07 000000455 INF: MeasureProfile done
17-03-18 05:51:59.824 -07 000000455 INF: X=13  Z correction [um]=0.03858674
17-03-18 05:51:59.824 -07 000000455 INF: Autofocus finished
17-03-18 05:52:00.004 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:00.004 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:52:00.004 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139300474677897. ----------
17-03-18 05:52:00.004 -07 000000610 INF: Cycle	142	Tile	1	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:00.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = True)
17-03-18 05:52:00.014 -07 000000610 INF: Z Motor: Moving to -0.132515 mm, started at -0.139300 mm, distance = 6.79 um
17-03-18 05:52:00.014 -07 000000610 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-18 05:52:00.014 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:52:00.024 -07 000000610 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:00.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:00.024 -07 000000382 INF: FPGA: Recv ZDACR 28948
17-03-18 05:52:00.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:00.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:52:00.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:00.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.194 -07 000000382 INF: FPGA: Recv ZSGSRD 29919
17-03-18 05:52:00.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:52:00.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.214 -07 000000382 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:52:00.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29913
17-03-18 05:52:00.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.234 -07 000000606 INF: FPGA: Recv ZSGSRD 29921
17-03-18 05:52:00.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.244 -07 000000455 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:52:00.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.254 -07 000000606 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:52:00.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.264 -07 000000606 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:52:00.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:00.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29920
17-03-18 05:52:00.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:00.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 25376
17-03-18 05:52:00.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:00.294 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.0 V.
17-03-18 05:52:00.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29917 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29917 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29911 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:00.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29917, posNoise = 4, negNoise = 6
17-03-18 05:52:00.294 -07 000000610 INF: Z Motor: After move to -0.132515, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:00.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:52:00.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:00.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:00.294 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:00.294 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:00.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:00.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:00.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:00.294 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:00.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:00.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:00.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:00.294 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:52:00.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:00.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:00.314 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:52:00.314 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:00.314 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:52:00.314 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:00.324 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:52:00.324 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:00.324 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:52:00.324 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 05:52:00.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29124 150\n [Camera]
17-03-18 05:52:00.534 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:00.814 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.999021,
17-03-18 05:52:00.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:00.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:00.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:00.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:00.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:00.984 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:00.994 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:00.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:52:01.004 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:01.004 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:52:01.174 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29124 832
17-03-18 05:52:01.324 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:01.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:52:01.374 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:52:01.374 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:01.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:52:01.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:52:01.374 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:01.374 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:01.374 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:52:01.374 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:01.384 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:52:01.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:01.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:01.534 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:01.534 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:01.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:01.544 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:01.664 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:01.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:52:01.664 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:01.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:52:01.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:01.724 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:01.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29124 150' command took 2 ms to send, 1388 ms to get response, and 1396 ms overall
17-03-18 05:52:01.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:01.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132516506656198. ------
17-03-18 05:52:01.734 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:01.734 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13890 mm
17-03-18 05:52:01.734 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:01.734 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:52:01.734 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:52:01.734 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:01.734 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30344, sync = True, waitForSettling = False)
17-03-18 05:52:01.734 -07 000000629 INF: Z Motor: Moving to -0.138906 mm, started at -0.132517 mm, distance = -6.39 um
17-03-18 05:52:01.744 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:52:01.744 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:01.744 -07 000000590 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:52:01.754 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:52:01.754 -07 000000629 INF: FPGA: Xmit ZDACW 30344\n [Z Motor]
17-03-18 05:52:01.754 -07 000000561 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:01.754 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:01.754 -07 000000561 INF: Y Motor: Moving 1332 steps1
17-03-18 05:52:01.754 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:52:01.764 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:01.764 -07 000000629 INF: FPGA: 'ZDACW 30344' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:52:01.774 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:01.784 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:01.784 -07 000000502 INF: FPGA: Recv ZDACR 30344
17-03-18 05:52:01.794 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:01.794 -07 000000629 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:52:01.804 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:01.964 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:01.964 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:52:02.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:52:02.054 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:52:02.054 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:02.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:52:02.054 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:52:02.054 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:02.064 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:02.064 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 05:52:02.064 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:02.074 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 05:52:02.144 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:52:02.144 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:52:02.184 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:02.194 -07 000000629 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:52:02.194 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:02.194 -07 000000561 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:02.194 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:52:02.194 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 05:52:03.144 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:03.144 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:52:03.154 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:03.154 -07 000000561 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:03.184 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:03.184 -07 000000561 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:03.184 -07 000000561 INF: Y Motor: Moved to 60.7324 after 1446 ms (table move)
17-03-18 05:52:03.184 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138906 mm (DAC = 30344)
17-03-18 05:52:03.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.194 -07 000000382 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:52:03.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:52:03.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:52:03.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.204 -07 000000590 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:52:03.214 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.214 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.214 -07 000000590 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:52:03.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:52:03.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.234 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.234 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:52:03.244 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.244 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.244 -07 000000561 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:52:03.254 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.254 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.254 -07 000000606 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:52:03.264 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.264 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:52:03.274 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.274 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:03.274 -07 000000561 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:52:03.284 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.284 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:03.284 -07 000000437 INF: FPGA: Recv ZPIEZORD 26676
17-03-18 05:52:03.294 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.3 V.
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30912 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30912 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30905 (-138.1 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30912, posNoise = 8, negNoise = 7
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: After move to -0.138906, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:52:03.294 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:03.344 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:52:03.344 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:03.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:03.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:03.344 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:03.344 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:03.344 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:03.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:03.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:03.344 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:03.354 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:03.354 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:03.364 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:52:03.364 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:52:03.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:03.414 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:03.714 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:03.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:03.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:03.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:52:03.754 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:03.754 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:03.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 372 ms to get response, and 384 ms overall
17-03-18 05:52:03.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:52:03.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:03.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:03.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:52:03.854 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:03.854 -07 000000590 INF: Autofocus start
17-03-18 05:52:03.854 -07 000000590 INF: MeasureProfile start
17-03-18 05:52:03.854 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:03.864 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:03.864 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:03.864 -07 000000590 INF: MeasureProfile done
17-03-18 05:52:03.864 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:52:03.864 -07 000000590 INF: Autofocus finished
17-03-18 05:52:04.064 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:04.064 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:04.064 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.13890859773725. ----------
17-03-18 05:52:04.064 -07 000000610 INF: Cycle	142	Tile	2	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:04.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28851, sync = True, waitForSettling = True)
17-03-18 05:52:04.074 -07 000000610 INF: Z Motor: Moving to -0.132071 mm, started at -0.138909 mm, distance = 6.84 um
17-03-18 05:52:04.074 -07 000000610 INF: FPGA: Xmit ZDACW 28851\n [Z Motor]
17-03-18 05:52:04.074 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:52:04.084 -07 000000610 INF: FPGA: 'ZDACW 28851' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:04.084 -07 000000590 INF: FPGA: Recv ZDACR 28851
17-03-18 05:52:04.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.244 -07 000000590 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:52:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:52:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.264 -07 000000455 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:52:04.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.274 -07 000000590 INF: FPGA: Recv ZSGSRD 29840
17-03-18 05:52:04.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.284 -07 000000590 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:52:04.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.294 -07 000000590 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:52:04.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.304 -07 000000382 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:52:04.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.314 -07 000000424 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:52:04.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.324 -07 000000424 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:52:04.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:04.334 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:52:04.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:04.344 -07 000000424 INF: FPGA: Recv ZPIEZORD 25275
17-03-18 05:52:04.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:04.354 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 05:52:04.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29840 (-131.2 uncal um), Max = 29858 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:52:04.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 8, negNoise = 10
17-03-18 05:52:04.354 -07 000000610 INF: Z Motor: After move to -0.132071, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:04.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:52:04.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:04.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:04.354 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:04.354 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:04.354 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:04.354 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:04.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:04.354 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:04.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:52:04.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:04.354 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:04.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:04.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:04.364 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:04.364 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:04.364 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:04.374 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:52:04.374 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:04.374 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:52:04.374 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:04.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29028 150\n [Camera]
17-03-18 05:52:04.574 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:05.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:05.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:05.024 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:05.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:05.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:05.024 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:05.024 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:05.024 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:52:05.034 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:05.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:52:05.214 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29028 832
17-03-18 05:52:05.364 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:05.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:52:05.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:52:05.424 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:05.424 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:05.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:52:05.424 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:52:05.424 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:52:05.424 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:05.434 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:05.434 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:52:05.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:05.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:05.584 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:05.584 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:05.584 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:52:05.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:05.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:05.584 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:05.584 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:05.584 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:52:05.774 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:05.774 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:05.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29028 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:52:05.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:05.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.1320860844427. ------
17-03-18 05:52:05.894 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13890 mm
17-03-18 05:52:05.894 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:05.904 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:05.904 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:52:05.904 -07 000000561 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:52:05.904 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30342, sync = True, waitForSettling = False)
17-03-18 05:52:05.904 -07 000000606 INF: Z Motor: Moving to -0.138897 mm, started at -0.132086 mm, distance = -6.81 um
17-03-18 05:52:05.904 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:05.914 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:52:05.914 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:05.914 -07 000000629 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:52:05.924 -07 000000606 INF: FPGA: Xmit ZDACW 30342\n [Z Motor]
17-03-18 05:52:05.924 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:52:05.924 -07 000000561 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:05.924 -07 000000561 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:05.924 -07 000000561 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:52:05.924 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:52:05.934 -07 000000606 INF: FPGA: 'ZDACW 30342' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:52:05.934 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:05.944 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:05.954 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:05.954 -07 000000502 INF: FPGA: Recv ZDACR 30342
17-03-18 05:52:05.964 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:05.964 -07 000000606 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 05:52:05.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:52:05.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:52:05.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:05.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:52:05.984 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:52:05.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:05.984 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:05.984 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:52:05.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:05.994 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:52:06.134 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:06.134 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:52:06.214 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.014009,
17-03-18 05:52:06.314 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:52:06.314 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:52:06.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:06.374 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:52:06.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:06.384 -07 000000561 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:06.384 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:52:06.384 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:52:06.804 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:07.334 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:07.334 -07 000000437 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:52:07.344 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:07.344 -07 000000561 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:07.374 -07 000000561 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:07.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:07.374 -07 000000561 INF: Y Motor: Moved to 61.5630 after 1470 ms (table move)
17-03-18 05:52:07.374 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138897 mm (DAC = 30342)
17-03-18 05:52:07.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.374 -07 000000502 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:52:07.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:07.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.384 -07 000000579 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:52:07.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:52:07.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.404 -07 000000502 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:52:07.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:52:07.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.424 -07 000000502 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:52:07.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.434 -07 000000502 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:52:07.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.444 -07 000000579 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:52:07.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.454 -07 000000502 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:52:07.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:07.464 -07 000000502 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:52:07.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.474 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:07.474 -07 000000502 INF: FPGA: Recv ZPIEZORD 26699
17-03-18 05:52:07.484 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.3 V.
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30913 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30912 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30905 (-138.1 uncal um), Max = 30921 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30913, posNoise = 8, negNoise = 8
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: After move to -0.138897, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: Settle wait time = 1472 ms, measure time = 106 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:52:07.484 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:07.534 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 05:52:07.534 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:07.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:07.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:07.534 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:07.534 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:07.534 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:07.534 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:07.534 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:07.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:07.544 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:07.544 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:07.554 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:52:07.554 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:52:07.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:07.594 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:07.894 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:07.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:07.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:07.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:07.934 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:07.934 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:07.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:52:08.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:52:08.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:08.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:52:08.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:52:08.034 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:08.034 -07 000000437 INF: Autofocus start
17-03-18 05:52:08.034 -07 000000437 INF: MeasureProfile start
17-03-18 05:52:08.034 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:08.044 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:08.044 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:08.044 -07 000000437 INF: MeasureProfile done
17-03-18 05:52:08.044 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:08.044 -07 000000437 INF: Autofocus finished
17-03-18 05:52:08.244 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:08.244 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:08.244 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138915021949391. ----------
17-03-18 05:52:08.244 -07 000000610 INF: Cycle	142	Tile	3	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:08.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28866, sync = True, waitForSettling = True)
17-03-18 05:52:08.254 -07 000000610 INF: Z Motor: Moving to -0.132140 mm, started at -0.138915 mm, distance = 6.77 um
17-03-18 05:52:08.254 -07 000000610 INF: FPGA: Xmit ZDACW 28866\n [Z Motor]
17-03-18 05:52:08.254 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:08.264 -07 000000610 INF: FPGA: 'ZDACW 28866' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:08.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:08.264 -07 000000579 INF: FPGA: Recv ZDACR 28866
17-03-18 05:52:08.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:08.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.424 -07 000000437 INF: FPGA: Recv ZSGSRD 29857
17-03-18 05:52:08.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:08.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.434 -07 000000437 INF: FPGA: Recv ZSGSRD 29859
17-03-18 05:52:08.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.444 -07 000000437 INF: FPGA: Recv ZSGSRD 29860
17-03-18 05:52:08.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.454 -07 000000579 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:52:08.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.464 -07 000000579 INF: FPGA: Recv ZSGSRD 29857
17-03-18 05:52:08.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.474 -07 000000424 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:52:08.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.484 -07 000000424 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:52:08.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.494 -07 000000579 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:52:08.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:08.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29857
17-03-18 05:52:08.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:08.514 -07 000000579 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:52:08.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:08.524 -07 000000579 INF: FPGA: Recv ZPIEZORD 25355
17-03-18 05:52:08.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:08.534 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.9 V.
17-03-18 05:52:08.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:52:08.534 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 4, negNoise = 4
17-03-18 05:52:08.534 -07 000000610 INF: Z Motor: After move to -0.132140, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:08.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:52:08.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:08.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:08.534 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:08.534 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:08.534 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:08.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:08.534 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:08.534 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:08.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:52:08.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:08.544 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:08.544 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:08.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:52:08.544 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:08.544 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:08.544 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:08.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:52:08.554 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:52:08.554 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:52:08.554 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:52:08.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29043 150\n [Camera]
17-03-18 05:52:08.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:09.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:09.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:09.204 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:09.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:09.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:09.204 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:09.204 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:09.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:52:09.204 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:09.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:09.394 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29043 832
17-03-18 05:52:09.544 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:09.574 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 05:52:09.574 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 05:52:09.574 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:09.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:52:09.584 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:52:09.584 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:09.584 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:09.584 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:52:09.584 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:09.594 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:52:09.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:09.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:09.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:09.764 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:09.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:52:09.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:09.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:09.764 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:09.764 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:09.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:52:09.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:52:09.954 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:09.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29043 150' command took 2 ms to send, 1391 ms to get response, and 1396 ms overall
17-03-18 05:52:09.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:09.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132137478139834. ------
17-03-18 05:52:09.954 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:09.954 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13865 mm
17-03-18 05:52:09.954 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:09.964 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:09.964 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:52:09.964 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:52:09.964 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:52:09.964 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:09.964 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30288, sync = True, waitForSettling = False)
17-03-18 05:52:09.964 -07 000000437 INF: Z Motor: Moving to -0.138650 mm, started at -0.132137 mm, distance = -6.51 um
17-03-18 05:52:09.974 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:09.974 -07 000000629 INF: FPGA: Recv YRDPOS 126082
17-03-18 05:52:09.984 -07 000000437 INF: FPGA: Xmit ZDACW 30288\n [Z Motor]
17-03-18 05:52:09.984 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:52:09.984 -07 000000382 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:09.984 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:52:09.984 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:09.984 -07 000000382 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:52:09.994 -07 000000437 INF: FPGA: 'ZDACW 30288' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:52:09.994 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:10.004 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:10.004 -07 000000502 INF: FPGA: Recv ZDACR 30288
17-03-18 05:52:10.014 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:10.014 -07 000000437 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:52:10.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:52:10.154 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:52:10.154 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:10.154 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:10.154 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:52:10.154 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:52:10.154 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:10.154 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:10.154 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:52:10.164 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:52:10.174 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:10.174 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 200 ms to get response, and 209 ms overall
17-03-18 05:52:10.374 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:52:10.374 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-18 05:52:10.424 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:10.424 -07 000000569 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:52:10.434 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:10.434 -07 000000382 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:10.434 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:52:10.434 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-18 05:52:11.384 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:11.384 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:52:11.394 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:11.394 -07 000000382 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:11.424 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:11.424 -07 000000382 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:52:11.424 -07 000000382 INF: Y Motor: Moved to 62.3950 after 1461 ms (table move)
17-03-18 05:52:11.424 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138650 mm (DAC = 30288)
17-03-18 05:52:11.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.424 -07 000000502 INF: FPGA: Recv ZSGSRD 30878
17-03-18 05:52:11.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:11.434 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.434 -07 000000382 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:52:11.444 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.444 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.444 -07 000000455 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:52:11.454 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.454 -07 000000382 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:52:11.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.464 -07 000000629 INF: FPGA: Recv ZSGSRD 30874
17-03-18 05:52:11.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.474 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.474 -07 000000561 INF: FPGA: Recv ZSGSRD 30879
17-03-18 05:52:11.484 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.484 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.484 -07 000000606 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:52:11.494 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.494 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.494 -07 000000629 INF: FPGA: Recv ZSGSRD 30876
17-03-18 05:52:11.504 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.504 -07 000000561 INF: FPGA: Recv ZSGSRD 30881
17-03-18 05:52:11.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:11.514 -07 000000629 INF: FPGA: Recv ZSGSRD 30868
17-03-18 05:52:11.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.524 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:11.524 -07 000000606 INF: FPGA: Recv ZPIEZORD 26666
17-03-18 05:52:11.534 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.3 V.
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30873 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30867 (-137.8 uncal um), Max = 30881 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30873, posNoise = 8, negNoise = 6
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: After move to -0.138650, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:52:11.534 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:11.574 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.985358,
17-03-18 05:52:11.584 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:52:11.584 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:11.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:11.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:11.584 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:11.584 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:11.584 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:11.584 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:11.584 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:11.584 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:11.594 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:11.594 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:11.604 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:52:11.604 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:52:11.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:11.654 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:11.804 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:11.954 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:11.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:11.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:11.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2341141320, 0x0, 559484976) start.
17-03-18 05:52:11.994 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:11.994 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:11.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 388 ms overall
17-03-18 05:52:12.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2341141320, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:52:12.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:12.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:12.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:52:12.094 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:12.094 -07 000000561 INF: Autofocus start
17-03-18 05:52:12.094 -07 000000561 INF: MeasureProfile start
17-03-18 05:52:12.094 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:12.104 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:12.104 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:12.114 -07 000000561 INF: MeasureProfile done
17-03-18 05:52:12.114 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:52:12.114 -07 000000561 INF: Autofocus finished
17-03-18 05:52:12.304 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:12.304 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:12.304 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138658053463721. ----------
17-03-18 05:52:12.304 -07 000000610 INF: Cycle	142	Tile	4	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:12.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28783, sync = True, waitForSettling = True)
17-03-18 05:52:12.314 -07 000000610 INF: Z Motor: Moving to -0.131760 mm, started at -0.138658 mm, distance = 6.90 um
17-03-18 05:52:12.314 -07 000000610 INF: FPGA: Xmit ZDACW 28783\n [Z Motor]
17-03-18 05:52:12.314 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:52:12.324 -07 000000610 INF: FPGA: 'ZDACW 28783' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:52:12.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:12.324 -07 000000382 INF: FPGA: Recv ZDACR 28783
17-03-18 05:52:12.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:12.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:52:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:12.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.494 -07 000000382 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:52:12.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29806
17-03-18 05:52:12.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:52:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29798
17-03-18 05:52:12.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.534 -07 000000382 INF: FPGA: Recv ZSGSRD 29800
17-03-18 05:52:12.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29799
17-03-18 05:52:12.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.554 -07 000000455 INF: FPGA: Recv ZSGSRD 29798
17-03-18 05:52:12.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29796
17-03-18 05:52:12.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:12.574 -07 000000606 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:52:12.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:12.584 -07 000000579 INF: FPGA: Recv ZPIEZORD 25305
17-03-18 05:52:12.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:12.594 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 05:52:12.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29796 (-131.0 uncal um), Max = 29806 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:52:12.594 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 6, negNoise = 4
17-03-18 05:52:12.594 -07 000000610 INF: Z Motor: After move to -0.131760, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:12.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:52:12.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:12.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:12.594 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:12.594 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:12.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:12.594 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:12.594 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:12.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:12.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:12.594 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:12.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:12.594 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:12.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:12.604 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:12.604 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:12.604 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:12.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:52:12.614 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:12.614 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:52:12.614 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:12.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28960 150\n [Camera]
17-03-18 05:52:12.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:13.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:13.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:13.264 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:13.264 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:13.264 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:52:13.264 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:13.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:13.264 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:13.264 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:13.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:52:13.454 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28960 832
17-03-18 05:52:13.604 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:13.654 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:52:13.654 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:52:13.654 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:13.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:52:13.654 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:52:13.654 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:13.654 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:13.654 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:13.654 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:52:13.664 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:52:13.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:13.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:13.824 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:13.824 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:13.824 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:52:13.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:13.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:13.824 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:13.824 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:13.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:52:14.014 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:14.014 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:14.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28960 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-18 05:52:14.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:14.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131764873835612. ------
17-03-18 05:52:14.134 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13842 mm
17-03-18 05:52:14.134 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:14.134 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:14.144 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:52:14.144 -07 000000437 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:52:14.144 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:14.144 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30238, sync = True, waitForSettling = False)
17-03-18 05:52:14.144 -07 000000569 INF: Z Motor: Moving to -0.138421 mm, started at -0.131765 mm, distance = -6.66 um
17-03-18 05:52:14.144 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:14.144 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:14.144 -07 000000579 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:52:14.154 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:14.154 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:14.154 -07 000000437 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:14.154 -07 000000437 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:14.154 -07 000000437 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:52:14.164 -07 000000569 INF: FPGA: Xmit ZDACW 30238\n [Z Motor]
17-03-18 05:52:14.164 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:14.174 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:14.174 -07 000000569 INF: FPGA: 'ZDACW 30238' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:52:14.184 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:14.184 -07 000000579 INF: FPGA: Recv ZDACR 30238
17-03-18 05:52:14.194 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:14.194 -07 000000569 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:52:14.224 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:52:14.224 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:52:14.224 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:14.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:52:14.224 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:52:14.224 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:14.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:14.234 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:52:14.234 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:52:14.234 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:52:14.354 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:14.354 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 05:52:14.544 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 05:52:14.544 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:52:14.594 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:14.604 -07 000000590 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:52:14.604 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:52:14.604 -07 000000437 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:14.604 -07 000000437 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:52:14.604 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 05:52:15.554 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:15.554 -07 000000502 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:52:15.564 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.564 -07 000000437 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:15.594 -07 000000437 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:15.594 -07 000000437 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:15.594 -07 000000437 INF: Y Motor: Moved to 63.2231 after 1451 ms (table move)
17-03-18 05:52:15.594 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138421 mm (DAC = 30238)
17-03-18 05:52:15.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.594 -07 000000569 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:52:15.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:15.604 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.604 -07 000000455 INF: FPGA: Recv ZSGSRD 30843
17-03-18 05:52:15.614 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.614 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.614 -07 000000502 INF: FPGA: Recv ZSGSRD 30835
17-03-18 05:52:15.624 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.624 -07 000000606 INF: FPGA: Recv ZSGSRD 30841
17-03-18 05:52:15.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.634 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.634 -07 000000569 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:52:15.644 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.644 -07 000000590 INF: FPGA: Recv ZSGSRD 30831
17-03-18 05:52:15.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.654 -07 000000437 INF: FPGA: Recv ZSGSRD 30831
17-03-18 05:52:15.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.664 -07 000000382 INF: FPGA: Recv ZSGSRD 30835
17-03-18 05:52:15.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.674 -07 000000606 INF: FPGA: Recv ZSGSRD 30844
17-03-18 05:52:15.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:15.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30839
17-03-18 05:52:15.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.694 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:15.694 -07 000000455 INF: FPGA: Recv ZPIEZORD 26675
17-03-18 05:52:15.704 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.2 V.
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30837 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30837 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30844 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30837, posNoise = 7, negNoise = 6
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: After move to -0.138421, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:52:15.704 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:15.754 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:52:15.754 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:15.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:15.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:15.754 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:15.754 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:15.754 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:15.754 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:15.754 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:15.754 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:15.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:15.764 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:15.774 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:52:15.774 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:52:15.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:15.824 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:16.114 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:16.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:16.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:16.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:16.154 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:16.154 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:16.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:52:16.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:52:16.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:16.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:16.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:52:16.264 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:16.264 -07 000000569 INF: Autofocus start
17-03-18 05:52:16.264 -07 000000569 INF: MeasureProfile start
17-03-18 05:52:16.264 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:16.274 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:16.274 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:16.274 -07 000000569 INF: MeasureProfile done
17-03-18 05:52:16.274 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:16.274 -07 000000569 INF: Autofocus finished
17-03-18 05:52:16.474 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:16.474 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:16.474 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138426781826618. ----------
17-03-18 05:52:16.474 -07 000000610 INF: Cycle	142	Tile	5	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:16.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28762, sync = True, waitForSettling = True)
17-03-18 05:52:16.484 -07 000000610 INF: Z Motor: Moving to -0.131664 mm, started at -0.138427 mm, distance = 6.76 um
17-03-18 05:52:16.484 -07 000000610 INF: FPGA: Xmit ZDACW 28762\n [Z Motor]
17-03-18 05:52:16.484 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:52:16.494 -07 000000610 INF: FPGA: 'ZDACW 28762' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:16.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:16.494 -07 000000590 INF: FPGA: Recv ZDACR 28762
17-03-18 05:52:16.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:16.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.654 -07 000000579 INF: FPGA: Recv ZSGSRD 29782
17-03-18 05:52:16.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:16.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.664 -07 000000590 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:52:16.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.674 -07 000000579 INF: FPGA: Recv ZSGSRD 29788
17-03-18 05:52:16.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.684 -07 000000579 INF: FPGA: Recv ZSGSRD 29783
17-03-18 05:52:16.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.694 -07 000000579 INF: FPGA: Recv ZSGSRD 29785
17-03-18 05:52:16.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.704 -07 000000424 INF: FPGA: Recv ZSGSRD 29788
17-03-18 05:52:16.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.714 -07 000000629 INF: FPGA: Recv ZSGSRD 29792
17-03-18 05:52:16.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29785
17-03-18 05:52:16.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.734 -07 000000629 INF: FPGA: Recv ZSGSRD 29783
17-03-18 05:52:16.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:16.744 -07 000000455 INF: FPGA: Recv ZSGSRD 29784
17-03-18 05:52:16.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:16.754 -07 000000629 INF: FPGA: Recv ZPIEZORD 25306
17-03-18 05:52:16.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:16.764 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.8 V.
17-03-18 05:52:16.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29785 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:52:16.764 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 6, negNoise = 4
17-03-18 05:52:16.764 -07 000000610 INF: Z Motor: After move to -0.131664, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:16.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 05:52:16.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:16.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:16.764 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:16.774 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:16.774 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:16.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:16.774 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:16.774 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:16.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:16.774 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:52:16.774 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:16.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:16.774 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:16.774 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:16.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:16.774 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:16.794 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:52:16.794 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:52:16.794 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:52:16.794 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:52:16.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28939 150\n [Camera]
17-03-18 05:52:16.804 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:16.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:16.934 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.005817,
17-03-18 05:52:16.994 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:17.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:17.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:17.444 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:17.444 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:17.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:17.444 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:17.444 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:17.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:17.454 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:17.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:52:17.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28939 832
17-03-18 05:52:17.784 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:17.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:52:17.824 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:52:17.824 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:17.824 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:52:17.824 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:52:17.824 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:17.834 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:52:17.834 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:52:17.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:52:17.834 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:52:18.004 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:18.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:18.004 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:18.004 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:18.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:18.004 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:18.004 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:18.004 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:52:18.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:18.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-18 05:52:18.194 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:52:18.194 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:18.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28939 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-18 05:52:18.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:18.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131674934865627. ------
17-03-18 05:52:18.194 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:18.194 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13807 mm
17-03-18 05:52:18.194 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:18.194 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:52:18.314 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:52:18.314 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:18.314 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:52:18.314 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:18.314 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30162, sync = True, waitForSettling = False)
17-03-18 05:52:18.314 -07 000000590 INF: Z Motor: Moving to -0.138073 mm, started at -0.131675 mm, distance = -6.40 um
17-03-18 05:52:18.324 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:18.324 -07 000000424 INF: FPGA: Recv YRDPOS 129482
17-03-18 05:52:18.324 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:18.324 -07 000000455 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:18.324 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:18.324 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 05:52:18.334 -07 000000590 INF: FPGA: Xmit ZDACW 30162\n [Z Motor]
17-03-18 05:52:18.334 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:52:18.344 -07 000000590 INF: FPGA: 'ZDACW 30162' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:52:18.344 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:18.354 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:18.354 -07 000000479 INF: FPGA: Recv ZDACR 30162
17-03-18 05:52:18.364 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:18.364 -07 000000590 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:52:18.404 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:52:18.404 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:52:18.404 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:18.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:52:18.404 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:52:18.404 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:18.404 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:18.404 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:52:18.404 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:18.414 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:52:18.524 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:18.524 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 05:52:18.714 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:52:18.714 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:52:18.774 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:18.774 -07 000000606 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:52:18.784 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:18.784 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:18.784 -07 000000455 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:52:18.784 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-18 05:52:19.734 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:19.734 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:52:19.744 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.744 -07 000000455 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:19.764 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:19.764 -07 000000455 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:52:19.764 -07 000000455 INF: Y Motor: Moved to 64.0566 after 1450 ms (table move)
17-03-18 05:52:19.774 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138073 mm (DAC = 30162)
17-03-18 05:52:19.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.774 -07 000000479 INF: FPGA: Recv ZSGSRD 30780
17-03-18 05:52:19.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:19.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.784 -07 000000629 INF: FPGA: Recv ZSGSRD 30785
17-03-18 05:52:19.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.794 -07 000000608 INF: FPGA: Recv ZSGSRD 30778
17-03-18 05:52:19.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.804 -07 000000424 INF: FPGA: Recv ZSGSRD 30777
17-03-18 05:52:19.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30780
17-03-18 05:52:19.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.824 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.824 -07 000000561 INF: FPGA: Recv ZSGSRD 30788
17-03-18 05:52:19.834 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.834 -07 000000569 INF: FPGA: Recv ZSGSRD 30790
17-03-18 05:52:19.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.844 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.844 -07 000000424 INF: FPGA: Recv ZSGSRD 30786
17-03-18 05:52:19.854 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.854 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.854 -07 000000591 INF: FPGA: Recv ZSGSRD 30782
17-03-18 05:52:19.864 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.864 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:19.864 -07 000000437 INF: FPGA: Recv ZSGSRD 30783
17-03-18 05:52:19.874 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.874 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:19.874 -07 000000608 INF: FPGA: Recv ZPIEZORD 26625
17-03-18 05:52:19.884 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.1 V.
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30783 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30782 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30777 (-137.2 uncal um), Max = 30790 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30783, posNoise = 7, negNoise = 6
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: After move to -0.138073, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: Settle wait time = 1453 ms, measure time = 113 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:52:19.884 -07 000000382 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:19.924 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 05:52:19.924 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:19.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:19.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:19.924 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:19.924 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:19.924 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:19.924 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:19.934 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:19.934 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:19.934 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:19.934 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:19.934 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:52:19.944 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:19.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:19.984 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:20.284 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:20.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:20.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:20.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:20.324 -07 000000455 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:52:20.324 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:20.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:52:20.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:52:20.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:20.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:20.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:52:20.424 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:20.424 -07 000000455 INF: Autofocus start
17-03-18 05:52:20.424 -07 000000455 INF: MeasureProfile start
17-03-18 05:52:20.424 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:20.434 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:20.434 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:20.444 -07 000000455 INF: MeasureProfile done
17-03-18 05:52:20.444 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:20.444 -07 000000455 INF: Autofocus finished
17-03-18 05:52:20.634 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:20.634 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:20.634 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138079874370963. ----------
17-03-18 05:52:20.634 -07 000000610 INF: Cycle	142	Tile	6	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:20.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28686, sync = True, waitForSettling = True)
17-03-18 05:52:20.644 -07 000000610 INF: Z Motor: Moving to -0.131316 mm, started at -0.138080 mm, distance = 6.76 um
17-03-18 05:52:20.644 -07 000000610 INF: FPGA: Xmit ZDACW 28686\n [Z Motor]
17-03-18 05:52:20.644 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:20.654 -07 000000610 INF: FPGA: 'ZDACW 28686' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:20.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:20.654 -07 000000479 INF: FPGA: Recv ZDACR 28686
17-03-18 05:52:20.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:20.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.814 -07 000000502 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:52:20.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:20.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.824 -07 000000590 INF: FPGA: Recv ZSGSRD 29736
17-03-18 05:52:20.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.834 -07 000000579 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:52:20.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.844 -07 000000629 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:52:20.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.854 -07 000000424 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:52:20.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.864 -07 000000382 INF: FPGA: Recv ZSGSRD 29737
17-03-18 05:52:20.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.874 -07 000000569 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:52:20.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.884 -07 000000479 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:52:20.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.894 -07 000000608 INF: FPGA: Recv ZSGSRD 29725
17-03-18 05:52:20.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:20.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:52:20.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:20.914 -07 000000455 INF: FPGA: Recv ZPIEZORD 25241
17-03-18 05:52:20.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:20.924 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-18 05:52:20.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29733 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29725 (-130.5 uncal um), Max = 29737 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:52:20.924 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29733, posNoise = 4, negNoise = 8
17-03-18 05:52:20.924 -07 000000610 INF: Z Motor: After move to -0.131316, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:20.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:52:20.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:20.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:20.934 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:20.934 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:20.934 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:20.934 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:20.934 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:20.934 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:20.934 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:20.934 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:52:20.934 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:20.934 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:20.934 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:52:20.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:20.934 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:20.934 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:20.944 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:52:20.944 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:52:20.944 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:52:20.944 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:20.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28863 150\n [Camera]
17-03-18 05:52:21.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:21.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:21.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:21.594 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:21.604 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:21.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:21.604 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:21.604 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:21.604 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:21.614 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:21.614 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:52:21.794 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28863 832
17-03-18 05:52:21.804 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:21.934 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:21.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:52:21.994 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:52:21.994 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:22.004 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:22.004 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:52:22.004 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:52:22.004 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:52:22.004 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:22.004 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:22.014 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:52:22.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:22.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:22.154 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:22.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:22.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:22.154 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:22.154 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:22.154 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:52:22.164 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:22.164 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:52:22.294 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.004458,
17-03-18 05:52:22.344 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:22.344 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:22.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28863 150' command took 2 ms to send, 1387 ms to get response, and 1399 ms overall
17-03-18 05:52:22.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:22.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131334451622114. ------
17-03-18 05:52:22.354 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:22.354 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13775 mm
17-03-18 05:52:22.354 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:22.354 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:52:22.354 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30092, sync = True, waitForSettling = False)
17-03-18 05:52:22.354 -07 000000569 INF: Z Motor: Moving to -0.137752 mm, started at -0.131334 mm, distance = -6.42 um
17-03-18 05:52:22.354 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:22.354 -07 000000479 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 05:52:22.364 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:22.364 -07 000000569 INF: FPGA: Xmit ZDACW 30092\n [Z Motor]
17-03-18 05:52:22.364 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 05:52:22.374 -07 000000569 INF: FPGA: 'ZDACW 30092' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:52:22.374 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:22.374 -07 000000561 INF: FPGA: Recv ZDACR 30092
17-03-18 05:52:22.384 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:22.384 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:22.384 -07 000000569 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 05:52:22.384 -07 000000590 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:52:22.394 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:22.394 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:52:22.394 -07 000000479 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:22.394 -07 000000479 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:22.394 -07 000000479 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:52:22.404 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:22.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:52:22.554 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:52:22.554 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:22.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:52:22.564 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:52:22.564 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:22.564 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:22.564 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:52:22.564 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:52:22.574 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:52:22.594 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:22.594 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:52:22.774 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:52:22.774 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:52:22.824 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:22.834 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:52:22.834 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:52:22.834 -07 000000479 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:22.834 -07 000000479 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:52:22.834 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.836 mm, average velocity = 2.160 mm/sec
17-03-18 05:52:23.784 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:23.784 -07 000000561 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:52:23.794 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:23.794 -07 000000479 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:23.824 -07 000000479 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:23.824 -07 000000479 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:23.824 -07 000000479 INF: Y Motor: Moved to 64.8784 after 1463 ms (table move)
17-03-18 05:52:23.824 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137752 mm (DAC = 30092)
17-03-18 05:52:23.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30727
17-03-18 05:52:23.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:23.834 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.834 -07 000000590 INF: FPGA: Recv ZSGSRD 30730
17-03-18 05:52:23.844 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.844 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.844 -07 000000569 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:52:23.854 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.854 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.854 -07 000000479 INF: FPGA: Recv ZSGSRD 30737
17-03-18 05:52:23.864 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.864 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30742
17-03-18 05:52:23.874 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.874 -07 000000479 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:52:23.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.884 -07 000000479 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:52:23.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.894 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.894 -07 000000579 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:52:23.904 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.904 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30731
17-03-18 05:52:23.914 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.914 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:23.914 -07 000000437 INF: FPGA: Recv ZSGSRD 30737
17-03-18 05:52:23.924 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.924 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:23.924 -07 000000479 INF: FPGA: Recv ZPIEZORD 26574
17-03-18 05:52:23.934 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.1 V.
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30733 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30732 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30727 (-136.9 uncal um), Max = 30742 (-137.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30733, posNoise = 9, negNoise = 6
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: After move to -0.137752, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: Settle wait time = 1466 ms, measure time = 107 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:52:23.934 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:23.984 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:52:23.984 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:23.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:23.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:23.984 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:23.984 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:23.984 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:23.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:23.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:23.984 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:23.994 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:23.994 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:23.994 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:52:23.994 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:24.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:24.044 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:24.344 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:24.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:24.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:24.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-18 05:52:24.384 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:24.384 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:24.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:52:24.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:52:24.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:24.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:52:24.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:52:24.484 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:24.484 -07 000000590 INF: Autofocus start
17-03-18 05:52:24.484 -07 000000590 INF: MeasureProfile start
17-03-18 05:52:24.484 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:24.494 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:24.494 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:24.494 -07 000000590 INF: MeasureProfile done
17-03-18 05:52:24.494 -07 000000590 INF: X=33  Z correction [um]=0.1347945
17-03-18 05:52:24.494 -07 000000590 INF: Autofocus finished
17-03-18 05:52:24.694 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:24.694 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:24.694 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137758663763874. ----------
17-03-18 05:52:24.694 -07 000000610 INF: Cycle	142	Tile	7	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:24.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28634, sync = True, waitForSettling = True)
17-03-18 05:52:24.704 -07 000000610 INF: Z Motor: Moving to -0.131078 mm, started at -0.137759 mm, distance = 6.68 um
17-03-18 05:52:24.704 -07 000000610 INF: FPGA: Xmit ZDACW 28634\n [Z Motor]
17-03-18 05:52:24.704 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:52:24.714 -07 000000610 INF: FPGA: 'ZDACW 28634' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:24.714 -07 000000608 INF: FPGA: Recv ZDACR 28634
17-03-18 05:52:24.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:24.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.874 -07 000000569 INF: FPGA: Recv ZSGSRD 29697
17-03-18 05:52:24.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:24.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29697
17-03-18 05:52:24.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.894 -07 000000502 INF: FPGA: Recv ZSGSRD 29688
17-03-18 05:52:24.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29689
17-03-18 05:52:24.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.914 -07 000000502 INF: FPGA: Recv ZSGSRD 29696
17-03-18 05:52:24.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.924 -07 000000579 INF: FPGA: Recv ZSGSRD 29699
17-03-18 05:52:24.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.934 -07 000000502 INF: FPGA: Recv ZSGSRD 29693
17-03-18 05:52:24.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.944 -07 000000455 INF: FPGA: Recv ZSGSRD 29693
17-03-18 05:52:24.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.954 -07 000000502 INF: FPGA: Recv ZSGSRD 29695
17-03-18 05:52:24.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:24.964 -07 000000590 INF: FPGA: Recv ZSGSRD 29697
17-03-18 05:52:24.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:24.974 -07 000000579 INF: FPGA: Recv ZPIEZORD 25170
17-03-18 05:52:24.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:24.984 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.9 V.
17-03-18 05:52:24.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29694 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29688 (-130.3 uncal um), Max = 29699 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:24.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29694, posNoise = 5, negNoise = 6
17-03-18 05:52:24.984 -07 000000610 INF: Z Motor: After move to -0.131078, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:24.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:52:24.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:24.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:24.984 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:24.984 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:24.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:24.984 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:24.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:24.984 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:24.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:24.984 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:24.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:24.984 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:24.984 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:24.984 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:24.994 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:24.994 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:25.004 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:52:25.004 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:52:25.004 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 05:52:25.004 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:52:25.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28811 150\n [Camera]
17-03-18 05:52:25.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:25.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:25.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:25.654 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:25.654 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:25.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:52:25.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:25.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:25.664 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:25.664 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:25.664 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:52:25.844 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28811 832
17-03-18 05:52:25.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:26.044 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:52:26.044 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:52:26.044 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:26.044 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:26.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:52:26.044 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:52:26.044 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:26.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:26.044 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:52:26.054 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:52:26.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:26.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:26.214 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:26.214 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:26.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:52:26.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:26.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:26.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:26.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:26.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:52:26.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:26.524 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:26.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28811 150' command took 2 ms to send, 1504 ms to get response, and 1514 ms overall
17-03-18 05:52:26.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:26.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131083907348585. ------
17-03-18 05:52:26.524 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:26.524 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13777 mm
17-03-18 05:52:26.524 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:26.534 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:26.534 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:26.534 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30095, sync = True, waitForSettling = False)
17-03-18 05:52:26.534 -07 000000437 INF: Z Motor: Moving to -0.137766 mm, started at -0.131084 mm, distance = -6.68 um
17-03-18 05:52:26.534 -07 000000437 INF: FPGA: Xmit ZDACW 30095\n [Z Motor]
17-03-18 05:52:26.534 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:52:26.534 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:52:26.534 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:26.544 -07 000000437 INF: FPGA: 'ZDACW 30095' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:26.544 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:26.554 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:26.554 -07 000000561 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:52:26.564 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:52:26.564 -07 000000569 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:26.564 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:26.564 -07 000000569 INF: Y Motor: Moving 1351 steps-29
17-03-18 05:52:26.564 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:26.564 -07 000000608 INF: FPGA: Recv ZDACR 30095
17-03-18 05:52:26.574 -07 000000437 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:26.574 -07 000000437 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:52:26.574 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:26.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:52:26.614 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:52:26.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:26.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:52:26.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:52:26.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:26.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:26.624 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:52:26.624 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:52:26.624 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:52:26.744 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:26.744 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 05:52:26.804 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:26.944 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:52:26.944 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 05:52:27.004 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:27.004 -07 000000625 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:52:27.014 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:27.014 -07 000000569 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:27.014 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:52:27.014 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-18 05:52:27.654 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.008536,
17-03-18 05:52:27.964 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:27.964 -07 000000437 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:52:27.974 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:27.974 -07 000000569 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:28.004 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:28.004 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:28.004 -07 000000569 INF: Y Motor: Moved to 65.7134 after 1474 ms (table move)
17-03-18 05:52:28.014 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137766 mm (DAC = 30095)
17-03-18 05:52:28.014 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.014 -07 000000569 INF: FPGA: Recv ZSGSRD 30742
17-03-18 05:52:28.024 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:28.024 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.024 -07 000000625 INF: FPGA: Recv ZSGSRD 30730
17-03-18 05:52:28.034 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.034 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.034 -07 000000625 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:52:28.044 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.044 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.044 -07 000000569 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:52:28.054 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.054 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.054 -07 000000606 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:52:28.064 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.064 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.064 -07 000000625 INF: FPGA: Recv ZSGSRD 30740
17-03-18 05:52:28.074 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.074 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.074 -07 000000437 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:52:28.084 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.084 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.084 -07 000000625 INF: FPGA: Recv ZSGSRD 30732
17-03-18 05:52:28.094 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.094 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.094 -07 000000437 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:52:28.104 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.104 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:28.104 -07 000000625 INF: FPGA: Recv ZSGSRD 30736
17-03-18 05:52:28.114 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.114 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:28.114 -07 000000608 INF: FPGA: Recv ZPIEZORD 26594
17-03-18 05:52:28.124 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.1 V.
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30735 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30729 (-136.9 uncal um), Max = 30742 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30735, posNoise = 7, negNoise = 6
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: After move to -0.137766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: Settle wait time = 1479 ms, measure time = 108 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:52:28.124 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:28.174 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 05:52:28.174 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:28.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:28.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:28.174 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:28.174 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:28.174 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:28.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:28.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:28.174 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:28.184 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:28.184 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:28.184 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:52:28.184 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:28.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:28.234 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:28.534 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:28.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:28.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:28.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:28.574 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:28.574 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:28.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:52:28.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:52:28.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:28.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:28.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:52:28.674 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:28.674 -07 000000579 INF: Autofocus start
17-03-18 05:52:28.674 -07 000000579 INF: MeasureProfile start
17-03-18 05:52:28.674 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:28.684 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:28.684 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:28.684 -07 000000579 INF: MeasureProfile done
17-03-18 05:52:28.684 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:52:28.684 -07 000000579 INF: Autofocus finished
17-03-18 05:52:28.884 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:28.884 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:28.884 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137771512188158. ----------
17-03-18 05:52:28.894 -07 000000610 INF: Cycle	142	Tile	8	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:28.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28590, sync = True, waitForSettling = True)
17-03-18 05:52:28.894 -07 000000610 INF: Z Motor: Moving to -0.130877 mm, started at -0.137772 mm, distance = 6.89 um
17-03-18 05:52:28.894 -07 000000610 INF: FPGA: Xmit ZDACW 28590\n [Z Motor]
17-03-18 05:52:28.894 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:28.904 -07 000000610 INF: FPGA: 'ZDACW 28590' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:28.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:28.904 -07 000000579 INF: FPGA: Recv ZDACR 28590
17-03-18 05:52:28.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:28.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:29.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.064 -07 000000606 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:52:29.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29657
17-03-18 05:52:29.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.084 -07 000000590 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:52:29.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.094 -07 000000579 INF: FPGA: Recv ZSGSRD 29657
17-03-18 05:52:29.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.104 -07 000000579 INF: FPGA: Recv ZSGSRD 29666
17-03-18 05:52:29.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29664
17-03-18 05:52:29.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.124 -07 000000579 INF: FPGA: Recv ZSGSRD 29668
17-03-18 05:52:29.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29662
17-03-18 05:52:29.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.144 -07 000000579 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:52:29.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:29.154 -07 000000625 INF: FPGA: Recv ZSGSRD 29665
17-03-18 05:52:29.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:29.164 -07 000000579 INF: FPGA: Recv ZPIEZORD 25158
17-03-18 05:52:29.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:29.174 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.9 V.
17-03-18 05:52:29.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29662 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29662 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29657 (-130.1 uncal um), Max = 29668 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:52:29.174 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29662, posNoise = 6, negNoise = 5
17-03-18 05:52:29.174 -07 000000610 INF: Z Motor: After move to -0.130877, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:29.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:52:29.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:29.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:29.174 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:29.174 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:29.174 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:29.174 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:29.174 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:29.174 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:29.174 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:29.174 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:29.174 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:29.174 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:29.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:29.184 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:29.184 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:52:29.184 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:29.184 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:52:29.184 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:29.194 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:52:29.194 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:29.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28767 150\n [Camera]
17-03-18 05:52:29.394 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:29.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:29.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:29.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:29.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:29.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:29.844 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:29.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:29.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:29.844 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:29.844 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:30.034 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28767 833
17-03-18 05:52:30.184 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:30.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:52:30.234 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:52:30.234 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:30.244 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:30.244 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:52:30.244 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:52:30.244 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:52:30.244 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:30.244 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:30.254 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:52:30.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:30.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:30.394 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:30.404 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:30.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:30.404 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:30.404 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:30.404 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:52:30.404 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:30.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:52:30.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:30.594 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:30.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28767 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:52:30.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:30.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130878332560049. ------
17-03-18 05:52:30.714 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:30.714 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13724 mm
17-03-18 05:52:30.714 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:30.714 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:30.714 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:52:30.714 -07 000000590 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:52:30.714 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29980, sync = True, waitForSettling = False)
17-03-18 05:52:30.714 -07 000000606 INF: Z Motor: Moving to -0.137240 mm, started at -0.130878 mm, distance = -6.36 um
17-03-18 05:52:30.724 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:30.724 -07 000000606 INF: FPGA: Xmit ZDACW 29980\n [Z Motor]
17-03-18 05:52:30.724 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:52:30.734 -07 000000606 INF: FPGA: 'ZDACW 29980' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:30.734 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:30.734 -07 000000625 INF: FPGA: Recv ZDACR 29980
17-03-18 05:52:30.744 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:30.744 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:30.744 -07 000000606 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 05:52:30.744 -07 000000579 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:52:30.754 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:30.754 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:52:30.754 -07 000000590 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:30.754 -07 000000590 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:30.754 -07 000000590 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:52:30.764 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:30.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:52:30.804 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:52:30.804 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:30.804 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:52:30.804 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:52:30.804 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:30.804 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:30.814 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:30.814 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:52:30.814 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:52:30.954 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:30.954 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 05:52:31.134 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:52:31.134 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 05:52:31.184 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:31.194 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:52:31.194 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:31.194 -07 000000590 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:31.194 -07 000000590 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:52:31.194 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 05:52:31.804 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:32.144 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:32.144 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:52:32.154 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:32.154 -07 000000590 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:32.184 -07 000000590 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:32.184 -07 000000590 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:52:32.184 -07 000000590 INF: Y Motor: Moved to 66.5386 after 1464 ms (table move)
17-03-18 05:52:32.184 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137240 mm (DAC = 29980)
17-03-18 05:52:32.184 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.194 -07 000000502 INF: FPGA: Recv ZSGSRD 30656
17-03-18 05:52:32.194 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:52:32.194 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30661
17-03-18 05:52:32.204 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:32.204 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.204 -07 000000606 INF: FPGA: Recv ZSGSRD 30653
17-03-18 05:52:32.214 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.214 -07 000000606 INF: FPGA: Recv ZSGSRD 30644
17-03-18 05:52:32.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.224 -07 000000424 INF: FPGA: Recv ZSGSRD 30655
17-03-18 05:52:32.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.234 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.234 -07 000000424 INF: FPGA: Recv ZSGSRD 30648
17-03-18 05:52:32.244 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30651
17-03-18 05:52:32.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.254 -07 000000424 INF: FPGA: Recv ZSGSRD 30652
17-03-18 05:52:32.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30661
17-03-18 05:52:32.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:32.274 -07 000000590 INF: FPGA: Recv ZSGSRD 30644
17-03-18 05:52:32.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.284 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:32.284 -07 000000424 INF: FPGA: Recv ZPIEZORD 26479
17-03-18 05:52:32.294 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.2 V.
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30652 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30652 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30644 (-136.4 uncal um), Max = 30661 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30652, posNoise = 9, negNoise = 8
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: After move to -0.137240, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: Settle wait time = 1469 ms, measure time = 102 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:52:32.294 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:32.344 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:52:32.344 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:32.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:32.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:32.344 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:32.344 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:32.354 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:32.354 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:32.354 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:32.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:32.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:32.354 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:32.364 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:52:32.364 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:32.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:32.404 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:32.704 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:32.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:32.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:32.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:32.744 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:32.744 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:32.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:52:32.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:52:32.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:32.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:32.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:52:32.844 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:32.844 -07 000000569 INF: Autofocus start
17-03-18 05:52:32.844 -07 000000569 INF: MeasureProfile start
17-03-18 05:52:32.844 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:32.854 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:32.854 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:32.854 -07 000000569 INF: MeasureProfile done
17-03-18 05:52:32.854 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:32.854 -07 000000569 INF: Autofocus finished
17-03-18 05:52:33.014 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.015368,
17-03-18 05:52:33.054 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:33.054 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:33.054 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137238302580392. ----------
17-03-18 05:52:33.054 -07 000000610 INF: Cycle	142	Tile	9	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:33.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28504, sync = True, waitForSettling = True)
17-03-18 05:52:33.064 -07 000000610 INF: Z Motor: Moving to -0.130483 mm, started at -0.137238 mm, distance = 6.76 um
17-03-18 05:52:33.064 -07 000000610 INF: FPGA: Xmit ZDACW 28504\n [Z Motor]
17-03-18 05:52:33.064 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:52:33.074 -07 000000610 INF: FPGA: 'ZDACW 28504' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:33.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:33.074 -07 000000569 INF: FPGA: Recv ZDACR 28504
17-03-18 05:52:33.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:33.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.234 -07 000000629 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:33.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:33.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.244 -07 000000608 INF: FPGA: Recv ZSGSRD 29606
17-03-18 05:52:33.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:52:33.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.264 -07 000000608 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:52:33.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.274 -07 000000629 INF: FPGA: Recv ZSGSRD 29604
17-03-18 05:52:33.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.284 -07 000000437 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:33.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.294 -07 000000569 INF: FPGA: Recv ZSGSRD 29598
17-03-18 05:52:33.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.304 -07 000000437 INF: FPGA: Recv ZSGSRD 29601
17-03-18 05:52:33.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29606
17-03-18 05:52:33.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:33.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29607
17-03-18 05:52:33.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:33.334 -07 000000502 INF: FPGA: Recv ZPIEZORD 25114
17-03-18 05:52:33.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:33.344 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.8 V.
17-03-18 05:52:33.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29598 (-129.7 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:33.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 3, negNoise = 6
17-03-18 05:52:33.344 -07 000000610 INF: Z Motor: After move to -0.130483, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:33.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:52:33.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:33.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:33.344 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:33.344 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:33.344 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:33.344 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:33.344 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:33.344 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:33.344 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:33.344 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:33.344 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:33.344 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:33.354 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:52:33.354 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:33.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:33.354 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:33.364 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:52:33.364 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:33.364 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:52:33.364 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:33.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28681 150\n [Camera]
17-03-18 05:52:33.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:34.014 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:34.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:34.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:34.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:34.014 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:34.014 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:34.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:34.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:34.024 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:34.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:34.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28681 832
17-03-18 05:52:34.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:34.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:52:34.414 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:52:34.414 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:34.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:52:34.414 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:52:34.414 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:34.424 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:34.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:34.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:52:34.424 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:52:34.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:34.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:34.564 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:34.574 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:34.574 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:52:34.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:34.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:34.574 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:34.574 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:34.574 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:52:34.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:52:34.764 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:34.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28681 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:52:34.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:34.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130505728255826. ------
17-03-18 05:52:34.764 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:34.764 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13725 mm
17-03-18 05:52:34.764 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:34.764 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:34.774 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:34.774 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:34.774 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:52:34.774 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:52:34.774 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29983, sync = True, waitForSettling = False)
17-03-18 05:52:34.774 -07 000000437 INF: Z Motor: Moving to -0.137253 mm, started at -0.130506 mm, distance = -6.75 um
17-03-18 05:52:34.784 -07 000000437 INF: FPGA: Xmit ZDACW 29983\n [Z Motor]
17-03-18 05:52:34.784 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:34.794 -07 000000437 INF: FPGA: 'ZDACW 29983' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:52:34.794 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:34.794 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:52:34.804 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:34.804 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:34.804 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:34.804 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:34.804 -07 000000569 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:52:34.804 -07 000000625 INF: FPGA: Recv ZDACR 29983
17-03-18 05:52:34.814 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:34.814 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:34.814 -07 000000437 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:52:34.974 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:34.974 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:34.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:52:34.974 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:52:34.974 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:34.974 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:52:34.974 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:52:34.974 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:34.974 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:34.974 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:52:34.984 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:52:34.984 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:52:35.184 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:52:35.184 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:52:35.234 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:35.244 -07 000000437 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:52:35.244 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:52:35.244 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:35.244 -07 000000569 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:52:35.244 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 05:52:36.194 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:36.194 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:52:36.204 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:36.204 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:36.234 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:36.234 -07 000000569 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:36.234 -07 000000569 INF: Y Motor: Moved to 67.3711 after 1463 ms (table move)
17-03-18 05:52:36.234 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137253 mm (DAC = 29983)
17-03-18 05:52:36.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.244 -07 000000629 INF: FPGA: Recv ZSGSRD 30654
17-03-18 05:52:36.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:52:36.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.244 -07 000000437 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:52:36.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.254 -07 000000629 INF: FPGA: Recv ZSGSRD 30653
17-03-18 05:52:36.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.264 -07 000000591 INF: FPGA: Recv ZSGSRD 30657
17-03-18 05:52:36.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.274 -07 000000579 INF: FPGA: Recv ZSGSRD 30650
17-03-18 05:52:36.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.284 -07 000000608 INF: FPGA: Recv ZSGSRD 30656
17-03-18 05:52:36.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.294 -07 000000569 INF: FPGA: Recv ZSGSRD 30651
17-03-18 05:52:36.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.304 -07 000000629 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:52:36.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.314 -07 000000502 INF: FPGA: Recv ZSGSRD 30664
17-03-18 05:52:36.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:36.324 -07 000000579 INF: FPGA: Recv ZSGSRD 30652
17-03-18 05:52:36.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.334 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:36.334 -07 000000502 INF: FPGA: Recv ZPIEZORD 26504
17-03-18 05:52:36.344 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.1 V.
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30655 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30655 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30650 (-136.4 uncal um), Max = 30664 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30655, posNoise = 9, negNoise = 5
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: After move to -0.137253, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 103 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:52:36.344 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:36.394 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:52:36.394 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:36.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:36.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:36.394 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:36.394 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:36.394 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:36.394 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:36.394 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:36.394 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:36.404 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:36.404 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:36.404 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:52:36.404 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:36.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:36.454 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:36.754 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:36.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:36.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:36.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:52:36.794 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:36.794 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:36.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:52:36.804 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:36.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:52:36.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:36.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:52:36.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:52:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:36.894 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:36.894 -07 000000591 INF: Autofocus start
17-03-18 05:52:36.894 -07 000000591 INF: MeasureProfile start
17-03-18 05:52:36.894 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:36.904 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:52:36.904 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:36.904 -07 000000591 INF: MeasureProfile done
17-03-18 05:52:36.904 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:36.904 -07 000000591 INF: Autofocus finished
17-03-18 05:52:37.104 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:37.104 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:52:37.114 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.137257575216817. ----------
17-03-18 05:52:37.114 -07 000000610 INF: Cycle	142	Tile	10	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:37.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28507, sync = True, waitForSettling = True)
17-03-18 05:52:37.114 -07 000000610 INF: Z Motor: Moving to -0.130497 mm, started at -0.137258 mm, distance = 6.76 um
17-03-18 05:52:37.114 -07 000000610 INF: FPGA: Xmit ZDACW 28507\n [Z Motor]
17-03-18 05:52:37.114 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:52:37.124 -07 000000610 INF: FPGA: 'ZDACW 28507' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:52:37.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:37.124 -07 000000629 INF: FPGA: Recv ZDACR 28507
17-03-18 05:52:37.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:37.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.284 -07 000000606 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:37.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:37.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.294 -07 000000608 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:52:37.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:37.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.314 -07 000000608 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:52:37.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.324 -07 000000606 INF: FPGA: Recv ZSGSRD 29606
17-03-18 05:52:37.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.344 -07 000000625 INF: FPGA: Recv ZSGSRD 29604
17-03-18 05:52:37.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:37.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.374 -07 000000424 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:52:37.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:37.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:37.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:37.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.414 -07 000000629 INF: FPGA: Recv ZSGSRD 29599
17-03-18 05:52:37.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:37.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:37.424 -07 000000629 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:52:37.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:37.434 -07 000000629 INF: FPGA: Recv ZPIEZORD 25109
17-03-18 05:52:37.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:37.444 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.9 V.
17-03-18 05:52:37.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29599 (-129.7 uncal um), Max = 29606 (-129.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:52:37.444 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 2, negNoise = 5
17-03-18 05:52:37.444 -07 000000610 INF: Z Motor: After move to -0.130497, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:37.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-18 05:52:37.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:37.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:37.444 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:37.444 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:37.444 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:37.444 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:37.444 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:37.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:37.444 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:37.444 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:37.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:37.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:37.454 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:37.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:37.454 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:37.454 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:37.454 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:52:37.464 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:37.464 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:52:37.464 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:37.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28684 150\n [Camera]
17-03-18 05:52:37.664 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:38.114 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:38.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:38.114 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:38.114 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:38.114 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:52:38.114 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:38.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:38.114 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:38.114 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:38.114 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:52:38.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28684 832
17-03-18 05:52:38.374 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.012614,
17-03-18 05:52:38.454 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:38.504 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:52:38.504 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:52:38.504 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:38.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:52:38.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:52:38.514 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:38.514 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:38.514 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:52:38.514 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:38.524 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:52:38.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:38.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:38.674 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:38.674 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:38.674 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:52:38.674 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:38.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:38.674 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:38.674 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:38.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:52:38.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:38.864 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:38.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28684 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:52:38.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:38.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130505728255826. ------
17-03-18 05:52:38.994 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:38.994 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13686 mm
17-03-18 05:52:38.994 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:38.994 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:52:38.994 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:52:38.994 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29897, sync = True, waitForSettling = False)
17-03-18 05:52:38.994 -07 000000437 INF: Z Motor: Moving to -0.136860 mm, started at -0.130506 mm, distance = -6.35 um
17-03-18 05:52:38.994 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:39.004 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:39.004 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:39.004 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:52:39.014 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:52:39.014 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:39.014 -07 000000437 INF: FPGA: Xmit ZDACW 29897\n [Z Motor]
17-03-18 05:52:39.014 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:52:39.014 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:39.014 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:52:39.024 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:39.024 -07 000000437 INF: FPGA: 'ZDACW 29897' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:52:39.034 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:39.044 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:39.044 -07 000000629 INF: FPGA: Recv ZDACR 29897
17-03-18 05:52:39.054 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:39.054 -07 000000437 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:52:39.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:52:39.074 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:52:39.074 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:39.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:52:39.074 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:52:39.074 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:39.074 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:39.084 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:52:39.084 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:52:39.084 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:52:39.224 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:39.224 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:52:39.404 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:52:39.404 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:52:39.454 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:39.464 -07 000000606 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:52:39.464 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:52:39.464 -07 000000625 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:39.464 -07 000000625 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 05:52:39.464 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.842 mm, average velocity = 2.136 mm/sec
17-03-18 05:52:40.414 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:40.414 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:52:40.424 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:40.424 -07 000000625 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:40.474 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:40.474 -07 000000625 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:40.474 -07 000000625 INF: Y Motor: Moved to 68.2046 after 1478 ms (table move)
17-03-18 05:52:40.474 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136860 mm (DAC = 29897)
17-03-18 05:52:40.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.474 -07 000000382 INF: FPGA: Recv ZSGSRD 30596
17-03-18 05:52:40.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:40.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.484 -07 000000382 INF: FPGA: Recv ZSGSRD 30590
17-03-18 05:52:40.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.494 -07 000000625 INF: FPGA: Recv ZSGSRD 30589
17-03-18 05:52:40.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.504 -07 000000625 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:52:40.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.514 -07 000000625 INF: FPGA: Recv ZSGSRD 30599
17-03-18 05:52:40.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.524 -07 000000606 INF: FPGA: Recv ZSGSRD 30599
17-03-18 05:52:40.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.534 -07 000000625 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:52:40.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.544 -07 000000606 INF: FPGA: Recv ZSGSRD 30594
17-03-18 05:52:40.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.554 -07 000000608 INF: FPGA: Recv ZSGSRD 30591
17-03-18 05:52:40.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:40.564 -07 000000606 INF: FPGA: Recv ZSGSRD 30592
17-03-18 05:52:40.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.574 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:40.574 -07 000000625 INF: FPGA: Recv ZPIEZORD 26391
17-03-18 05:52:40.584 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.2 V.
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30593 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30587 (-136.0 uncal um), Max = 30599 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 6, negNoise = 6
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: After move to -0.136860, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: Settle wait time = 1483 ms, measure time = 103 ms (allowed 150 ms), total time = 1586 ms
17-03-18 05:52:40.584 -07 000000591 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:40.634 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 05:52:40.634 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:40.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:40.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:40.634 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:40.634 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:40.634 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:40.634 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:40.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:52:40.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:40.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:40.644 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:40.654 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:52:40.654 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:52:40.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:40.694 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:40.994 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:40.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:40.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:40.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:41.034 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:41.034 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:41.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:52:41.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:52:41.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:41.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:41.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:52:41.134 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:41.134 -07 000000424 INF: Autofocus start
17-03-18 05:52:41.134 -07 000000424 INF: MeasureProfile start
17-03-18 05:52:41.134 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:41.144 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:41.144 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:41.154 -07 000000424 INF: MeasureProfile done
17-03-18 05:52:41.154 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:52:41.154 -07 000000424 INF: Autofocus finished
17-03-18 05:52:41.344 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:41.344 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:41.344 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136859274064028. ----------
17-03-18 05:52:41.344 -07 000000610 INF: Cycle	142	Tile	11	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:41.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28421, sync = True, waitForSettling = True)
17-03-18 05:52:41.354 -07 000000610 INF: Z Motor: Moving to -0.130103 mm, started at -0.136859 mm, distance = 6.76 um
17-03-18 05:52:41.354 -07 000000610 INF: FPGA: Xmit ZDACW 28421\n [Z Motor]
17-03-18 05:52:41.354 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:52:41.364 -07 000000610 INF: FPGA: 'ZDACW 28421' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:41.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:41.364 -07 000000625 INF: FPGA: Recv ZDACR 28421
17-03-18 05:52:41.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:41.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.524 -07 000000625 INF: FPGA: Recv ZSGSRD 29545
17-03-18 05:52:41.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:41.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.534 -07 000000625 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:52:41.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.544 -07 000000625 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:52:41.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.554 -07 000000625 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:52:41.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.564 -07 000000625 INF: FPGA: Recv ZSGSRD 29546
17-03-18 05:52:41.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29538
17-03-18 05:52:41.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.584 -07 000000625 INF: FPGA: Recv ZSGSRD 29538
17-03-18 05:52:41.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.594 -07 000000437 INF: FPGA: Recv ZSGSRD 29548
17-03-18 05:52:41.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.604 -07 000000629 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:52:41.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:41.614 -07 000000437 INF: FPGA: Recv ZSGSRD 29548
17-03-18 05:52:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:41.624 -07 000000625 INF: FPGA: Recv ZPIEZORD 25053
17-03-18 05:52:41.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:41.634 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.8 V.
17-03-18 05:52:41.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29543 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29541 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29538 (-129.3 uncal um), Max = 29548 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:52:41.634 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29543, posNoise = 5, negNoise = 5
17-03-18 05:52:41.634 -07 000000610 INF: Z Motor: After move to -0.130103, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:41.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:52:41.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:41.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:41.634 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:41.634 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:41.634 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:41.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:41.634 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:41.634 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:41.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:52:41.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:41.634 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:52:41.634 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:41.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:41.644 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:41.644 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:41.644 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:41.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:52:41.654 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:52:41.654 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:52:41.654 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:52:41.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28598 150\n [Camera]
17-03-18 05:52:41.804 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:41.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:42.304 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:42.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:42.304 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:42.304 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:42.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:42.304 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:42.304 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:42.304 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:42.304 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:42.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:42.494 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28598 832
17-03-18 05:52:42.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:42.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:52:42.694 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:52:42.694 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:42.694 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:42.694 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:52:42.704 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:52:42.704 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:52:42.704 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:42.704 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:42.714 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:52:42.854 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:42.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:42.854 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:42.864 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:42.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:42.864 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:42.874 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:42.874 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:52:42.874 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:42.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:52:43.054 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:43.054 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:43.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28598 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:52:43.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:43.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130113851315179. ------
17-03-18 05:52:43.054 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:43.054 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13672 mm
17-03-18 05:52:43.054 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:43.054 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:52:43.054 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:52:43.054 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29866, sync = True, waitForSettling = False)
17-03-18 05:52:43.054 -07 000000579 INF: Z Motor: Moving to -0.136718 mm, started at -0.130114 mm, distance = -6.60 um
17-03-18 05:52:43.054 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:43.064 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:43.064 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:43.174 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:52:43.184 -07 000000382 INF: FPGA: 'YRDPOS' command took 118 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 05:52:43.184 -07 000000382 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:43.184 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:43.184 -07 000000382 INF: Y Motor: Moving 1341 steps-16
17-03-18 05:52:43.184 -07 000000579 INF: FPGA: Xmit ZDACW 29866\n [Z Motor]
17-03-18 05:52:43.184 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:52:43.194 -07 000000579 INF: FPGA: 'ZDACW 29866' command took 1 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 05:52:43.194 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:43.194 -07 000000502 INF: FPGA: Recv ZDACR 29866
17-03-18 05:52:43.204 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:43.204 -07 000000579 INF: Z Motor: MoveAbsStepped took 141 ms (did NOT wait for settling yet))
17-03-18 05:52:43.204 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:43.214 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:43.264 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:52:43.264 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:52:43.264 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:43.264 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:52:43.264 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:52:43.264 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:43.274 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:43.274 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:52:43.274 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:43.274 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:52:43.404 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:43.404 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 224 ms overall
17-03-18 05:52:43.584 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:52:43.584 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:52:43.634 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:43.644 -07 000000591 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:52:43.644 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:43.644 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:43.644 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:52:43.644 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.059 mm/sec
17-03-18 05:52:43.734 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.024884,
17-03-18 05:52:44.594 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:44.594 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-18 05:52:44.604 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:44.604 -07 000000382 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:44.634 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:44.634 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:52:44.634 -07 000000382 INF: Y Motor: Moved to 69.0269 after 1573 ms (table move)
17-03-18 05:52:44.634 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136718 mm (DAC = 29866)
17-03-18 05:52:44.634 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.634 -07 000000512 INF: FPGA: Recv ZSGSRD 30578
17-03-18 05:52:44.644 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:44.644 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.644 -07 000000479 INF: FPGA: Recv ZSGSRD 30570
17-03-18 05:52:44.654 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.654 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.654 -07 000000437 INF: FPGA: Recv ZSGSRD 30563
17-03-18 05:52:44.664 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.664 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.664 -07 000000424 INF: FPGA: Recv ZSGSRD 30564
17-03-18 05:52:44.674 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.674 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.674 -07 000000502 INF: FPGA: Recv ZSGSRD 30574
17-03-18 05:52:44.684 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.684 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.684 -07 000000608 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:52:44.694 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.694 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.694 -07 000000569 INF: FPGA: Recv ZSGSRD 30574
17-03-18 05:52:44.704 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.704 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.704 -07 000000579 INF: FPGA: Recv ZSGSRD 30578
17-03-18 05:52:44.714 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.714 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.714 -07 000000625 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:52:44.724 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.724 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:44.724 -07 000000437 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:52:44.734 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.734 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:44.734 -07 000000606 INF: FPGA: Recv ZPIEZORD 26390
17-03-18 05:52:44.744 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.2 V.
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30573 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30574 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30563 (-135.9 uncal um), Max = 30578 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30573, posNoise = 5, negNoise = 10
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: After move to -0.136718, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: Settle wait time = 1576 ms, measure time = 105 ms (allowed 150 ms), total time = 1681 ms
17-03-18 05:52:44.744 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:44.794 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 05:52:44.794 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:44.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:44.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:44.794 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:44.794 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:44.794 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:44.794 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:44.794 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:44.794 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:44.804 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:44.804 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:44.814 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:52:44.814 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:52:44.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:44.864 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:45.154 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:45.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:45.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:45.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:45.194 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:45.204 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:45.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:52:45.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:52:45.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:45.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:52:45.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:52:45.304 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:45.304 -07 000000455 INF: Autofocus start
17-03-18 05:52:45.304 -07 000000455 INF: MeasureProfile start
17-03-18 05:52:45.304 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:45.314 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:45.314 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:45.314 -07 000000455 INF: MeasureProfile done
17-03-18 05:52:45.314 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:52:45.314 -07 000000455 INF: Autofocus finished
17-03-18 05:52:45.514 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:45.514 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:45.514 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.136730789821193. ----------
17-03-18 05:52:45.514 -07 000000610 INF: Cycle	142	Tile	12	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:45.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28374, sync = True, waitForSettling = True)
17-03-18 05:52:45.524 -07 000000610 INF: Z Motor: Moving to -0.129888 mm, started at -0.136731 mm, distance = 6.84 um
17-03-18 05:52:45.524 -07 000000610 INF: FPGA: Xmit ZDACW 28374\n [Z Motor]
17-03-18 05:52:45.524 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:52:45.534 -07 000000610 INF: FPGA: 'ZDACW 28374' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:45.534 -07 000000579 INF: FPGA: Recv ZDACR 28374
17-03-18 05:52:45.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:45.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.694 -07 000000479 INF: FPGA: Recv ZSGSRD 29506
17-03-18 05:52:45.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:45.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.704 -07 000000424 INF: FPGA: Recv ZSGSRD 29511
17-03-18 05:52:45.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.714 -07 000000502 INF: FPGA: Recv ZSGSRD 29507
17-03-18 05:52:45.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.724 -07 000000447 INF: FPGA: Recv ZSGSRD 29512
17-03-18 05:52:45.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.734 -07 000000579 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:52:45.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29506
17-03-18 05:52:45.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.754 -07 000000502 INF: FPGA: Recv ZSGSRD 29507
17-03-18 05:52:45.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.764 -07 000000629 INF: FPGA: Recv ZSGSRD 29506
17-03-18 05:52:45.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.774 -07 000000591 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:52:45.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:45.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29505
17-03-18 05:52:45.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:45.794 -07 000000462 INF: FPGA: Recv ZPIEZORD 25005
17-03-18 05:52:45.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:45.804 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.9 V.
17-03-18 05:52:45.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29508 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29507 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29505 (-129.1 uncal um), Max = 29512 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:52:45.804 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29508, posNoise = 4, negNoise = 3
17-03-18 05:52:45.804 -07 000000610 INF: Z Motor: After move to -0.129888, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:45.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:52:45.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:45.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:45.804 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:45.804 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:45.804 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:45.804 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:45.804 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:45.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:45.804 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:52:45.804 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:45.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:45.804 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:45.814 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:45.814 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:45.814 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:45.814 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:45.824 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:52:45.824 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:52:45.824 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:52:45.824 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:52:45.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28551 150\n [Camera]
17-03-18 05:52:46.024 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:46.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:46.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:46.474 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:46.474 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:46.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:46.474 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:46.474 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:46.474 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:46.484 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:46.484 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:46.664 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28551 832
17-03-18 05:52:46.804 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:46.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:46.854 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:52:46.854 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:52:46.854 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:46.864 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:52:46.864 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:52:46.864 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:46.864 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:46.864 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:46.864 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:52:46.864 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:52:47.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:47.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:47.034 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:47.034 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:47.034 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:52:47.034 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:47.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:47.034 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:47.034 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:47.034 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:52:47.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:52:47.224 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:47.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28551 150' command took 2 ms to send, 1392 ms to get response, and 1396 ms overall
17-03-18 05:52:47.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:47.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.129889003890217. ------
17-03-18 05:52:47.224 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:47.224 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13655 mm
17-03-18 05:52:47.224 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:47.234 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29829, sync = True, waitForSettling = False)
17-03-18 05:52:47.234 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:52:47.234 -07 000000591 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 05:52:47.234 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:47.234 -07 000000512 INF: Z Motor: Moving to -0.136548 mm, started at -0.129889 mm, distance = -6.66 um
17-03-18 05:52:47.234 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:47.234 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 05:52:47.234 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-18 05:52:47.244 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:47.244 -07 000000591 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:47.244 -07 000000591 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:47.244 -07 000000591 INF: Y Motor: Moving 1353 steps-33
17-03-18 05:52:47.244 -07 000000512 INF: FPGA: Xmit ZDACW 29829\n [Z Motor]
17-03-18 05:52:47.244 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:52:47.254 -07 000000512 INF: FPGA: 'ZDACW 29829' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:52:47.254 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:47.264 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:47.274 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:47.274 -07 000000625 INF: FPGA: Recv ZDACR 29829
17-03-18 05:52:47.284 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:52:47.284 -07 000000512 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:52:47.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:52:47.424 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:52:47.424 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:47.424 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:52:47.424 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:52:47.424 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:47.424 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:47.434 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:52:47.434 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:52:47.434 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:52:47.454 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:47.454 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-18 05:52:47.634 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:52:47.634 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:52:47.684 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:47.694 -07 000000606 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:52:47.694 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:52:47.694 -07 000000591 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:47.694 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:52:47.694 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-18 05:52:48.644 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:48.644 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:52:48.654 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:48.654 -07 000000591 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:48.684 -07 000000591 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:48.684 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:48.684 -07 000000591 INF: Y Motor: Moved to 69.8628 after 1451 ms (table move)
17-03-18 05:52:48.684 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136548 mm (DAC = 29829)
17-03-18 05:52:48.684 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.684 -07 000000606 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:52:48.694 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:48.694 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.694 -07 000000591 INF: FPGA: Recv ZSGSRD 30546
17-03-18 05:52:48.704 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.704 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.704 -07 000000608 INF: FPGA: Recv ZSGSRD 30545
17-03-18 05:52:48.714 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.714 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.714 -07 000000424 INF: FPGA: Recv ZSGSRD 30543
17-03-18 05:52:48.724 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.724 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.724 -07 000000608 INF: FPGA: Recv ZSGSRD 30532
17-03-18 05:52:48.734 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.734 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.734 -07 000000625 INF: FPGA: Recv ZSGSRD 30545
17-03-18 05:52:48.744 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.744 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.744 -07 000000591 INF: FPGA: Recv ZSGSRD 30543
17-03-18 05:52:48.754 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.754 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30547
17-03-18 05:52:48.764 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.764 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.764 -07 000000382 INF: FPGA: Recv ZSGSRD 30551
17-03-18 05:52:48.774 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:48.784 -07 000000424 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:52:48.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:48.794 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:48.794 -07 000000512 INF: FPGA: Recv ZPIEZORD 26419
17-03-18 05:52:48.804 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.1 V.
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30545 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30546 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30532 (-135.7 uncal um), Max = 30551 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30545, posNoise = 6, negNoise = 13
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: After move to -0.136548, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: Settle wait time = 1453 ms, measure time = 115 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:52:48.804 -07 000000455 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:48.844 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:52:48.844 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:48.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:48.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:48.844 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:48.844 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:48.844 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:48.844 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:48.844 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:52:48.844 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:48.854 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:48.854 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:48.864 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:52:48.864 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:52:48.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:48.914 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:49.094 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.994908,
17-03-18 05:52:49.214 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:49.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:49.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:49.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-18 05:52:49.244 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:49.254 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:49.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:52:49.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:52:49.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:49.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:52:49.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:52:49.354 -07 000000455 INF: Autofocus start
17-03-18 05:52:49.354 -07 000000455 INF: MeasureProfile start
17-03-18 05:52:49.354 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:49.354 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:49.364 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:49.364 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:49.374 -07 000000455 INF: MeasureProfile done
17-03-18 05:52:49.374 -07 000000455 INF: X=-160  Z correction [um]=-0.782254
17-03-18 05:52:49.374 -07 000000455 INF: Autofocus finished
17-03-18 05:52:49.564 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:49.564 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:49.574 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136550911881223. ----------
17-03-18 05:52:49.574 -07 000000610 INF: Cycle	142	Tile	13	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:49.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28170, sync = True, waitForSettling = True)
17-03-18 05:52:49.574 -07 000000610 INF: Z Motor: Moving to -0.128954 mm, started at -0.136551 mm, distance = 7.60 um
17-03-18 05:52:49.574 -07 000000610 INF: FPGA: Xmit ZDACW 28170\n [Z Motor]
17-03-18 05:52:49.584 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:52:49.584 -07 000000610 INF: FPGA: 'ZDACW 28170' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:49.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:49.584 -07 000000455 INF: FPGA: Recv ZDACR 28170
17-03-18 05:52:49.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:49.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.744 -07 000000455 INF: FPGA: Recv ZSGSRD 29361
17-03-18 05:52:49.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:49.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.754 -07 000000625 INF: FPGA: Recv ZSGSRD 29362
17-03-18 05:52:49.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.764 -07 000000455 INF: FPGA: Recv ZSGSRD 29366
17-03-18 05:52:49.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.774 -07 000000625 INF: FPGA: Recv ZSGSRD 29364
17-03-18 05:52:49.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29363
17-03-18 05:52:49.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.794 -07 000000625 INF: FPGA: Recv ZSGSRD 29365
17-03-18 05:52:49.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.804 -07 000000424 INF: FPGA: Recv ZSGSRD 29361
17-03-18 05:52:49.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.814 -07 000000424 INF: FPGA: Recv ZSGSRD 29367
17-03-18 05:52:49.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.824 -07 000000424 INF: FPGA: Recv ZSGSRD 29362
17-03-18 05:52:49.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:49.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29361
17-03-18 05:52:49.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:49.844 -07 000000382 INF: FPGA: Recv ZPIEZORD 24878
17-03-18 05:52:49.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:49.854 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.8 V.
17-03-18 05:52:49.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29363 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29362 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29361 (-128.2 uncal um), Max = 29367 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:52:49.854 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29363, posNoise = 4, negNoise = 2
17-03-18 05:52:49.854 -07 000000610 INF: Z Motor: After move to -0.128954, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:49.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:52:49.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:49.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:49.854 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:49.854 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:49.854 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:49.854 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:49.854 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:49.854 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:49.854 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:49.854 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:49.854 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:52:49.854 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:49.864 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:49.864 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:49.864 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:49.864 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:49.874 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:52:49.874 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:52:49.874 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:52:49.874 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:52:49.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28347 150\n [Camera]
17-03-18 05:52:50.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:50.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:50.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:50.524 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:50.524 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:50.524 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:52:50.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:50.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:50.524 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:50.524 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:50.524 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:52:50.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28347 832
17-03-18 05:52:50.864 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:50.904 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:52:50.904 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:52:50.904 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:50.904 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:52:50.904 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:52:50.904 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:50.904 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:50.904 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:52:50.914 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:52:50.914 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:52:51.084 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-18 05:52:51.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-18 05:52:51.084 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:51.084 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:51.084 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:52:51.084 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-18 05:52:51.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-18 05:52:51.084 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:51.084 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:51.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:52:51.274 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:52:51.274 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:51.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28347 150' command took 2 ms to send, 1392 ms to get response, and 1399 ms overall
17-03-18 05:52:51.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:51.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.128957493129662. ------
17-03-18 05:52:51.274 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:51.274 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13521 mm
17-03-18 05:52:51.274 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:51.284 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:52:51.284 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:52:51.284 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:51.394 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29536, sync = True, waitForSettling = False)
17-03-18 05:52:51.394 -07 000000608 INF: Z Motor: Moving to -0.135207 mm, started at -0.128957 mm, distance = -6.25 um
17-03-18 05:52:51.394 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:51.394 -07 000000625 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:52:51.394 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 119 ms to get response, and 122 ms overall
17-03-18 05:52:51.404 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:51.404 -07 000000382 INF: FPGA: 'YRDPOS' command took 118 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 05:52:51.404 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:51.404 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:51.404 -07 000000382 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:52:51.414 -07 000000608 INF: FPGA: Xmit ZDACW 29536\n [Z Motor]
17-03-18 05:52:51.414 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:52:51.424 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:51.424 -07 000000608 INF: FPGA: 'ZDACW 29536' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:52:51.434 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:51.434 -07 000000591 INF: FPGA: Recv ZDACR 29536
17-03-18 05:52:51.444 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:51.444 -07 000000608 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:52:51.474 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:52:51.474 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:52:51.474 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:51.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:52:51.474 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:52:51.474 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:51.484 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:51.484 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:52:51.484 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:52:51.494 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:52:51.604 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:51.604 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:52:51.794 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:52:51.794 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:52:51.804 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:51.854 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:51.854 -07 000000590 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:52:51.864 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:51.864 -07 000000382 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:51.864 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:52:51.864 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:52:52.814 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:52.814 -07 000000608 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:52:52.824 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:52.824 -07 000000382 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:52.854 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:52.854 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:52.854 -07 000000382 INF: Y Motor: Moved to 70.6875 after 1572 ms (table move)
17-03-18 05:52:52.854 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135207 mm (DAC = 29536)
17-03-18 05:52:52.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.854 -07 000000479 INF: FPGA: Recv ZSGSRD 30348
17-03-18 05:52:52.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:52:52.864 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30337
17-03-18 05:52:52.874 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.874 -07 000000455 INF: FPGA: Recv ZSGSRD 30335
17-03-18 05:52:52.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.884 -07 000000462 INF: FPGA: Recv ZSGSRD 30330
17-03-18 05:52:52.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30335
17-03-18 05:52:52.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30335
17-03-18 05:52:52.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.914 -07 000000424 INF: FPGA: Recv ZSGSRD 30340
17-03-18 05:52:52.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.924 -07 000000462 INF: FPGA: Recv ZSGSRD 30340
17-03-18 05:52:52.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.934 -07 000000479 INF: FPGA: Recv ZSGSRD 30335
17-03-18 05:52:52.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:52.944 -07 000000447 INF: FPGA: Recv ZSGSRD 30340
17-03-18 05:52:52.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.954 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:52.954 -07 000000455 INF: FPGA: Recv ZPIEZORD 26179
17-03-18 05:52:52.964 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.507 V. Piezo Error = -9.1 V.
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30338 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30330 (-134.4 uncal um), Max = 30348 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30338, posNoise = 10, negNoise = 8
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: After move to -0.135207, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: Settle wait time = 1456 ms, measure time = 105 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:52:52.964 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:53.014 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 05:52:53.014 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:53.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:53.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:53.014 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:53.014 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:53.014 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:53.014 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:53.014 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:53.014 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:53.024 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:52:53.024 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:53.024 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:52:53.024 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:52:53.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:53.074 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:53.374 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:53.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:53.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:53.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:53.414 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:53.414 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:53.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 05:52:53.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:52:53.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:53.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:53.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:52:53.514 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:53.514 -07 000000625 INF: Autofocus start
17-03-18 05:52:53.514 -07 000000625 INF: MeasureProfile start
17-03-18 05:52:53.514 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:53.524 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:53.524 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:53.524 -07 000000625 INF: MeasureProfile done
17-03-18 05:52:53.524 -07 000000625 INF: X=48  Z correction [um]=0.2069503
17-03-18 05:52:53.524 -07 000000625 INF: Autofocus finished
17-03-18 05:52:53.724 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:53.724 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:53.724 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135221099967879. ----------
17-03-18 05:52:53.724 -07 000000610 INF: Cycle	142	Tile	14	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:53.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 05:52:53.734 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.135221 mm, distance = 6.62 um
17-03-18 05:52:53.734 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 05:52:53.734 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:52:53.744 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:53.744 -07 000000437 INF: FPGA: Recv ZDACR 28093
17-03-18 05:52:53.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:53.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.904 -07 000000579 INF: FPGA: Recv ZSGSRD 29311
17-03-18 05:52:53.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:53.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.914 -07 000000625 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:52:53.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.924 -07 000000579 INF: FPGA: Recv ZSGSRD 29311
17-03-18 05:52:53.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:52:53.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.944 -07 000000579 INF: FPGA: Recv ZSGSRD 29309
17-03-18 05:52:53.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.954 -07 000000625 INF: FPGA: Recv ZSGSRD 29311
17-03-18 05:52:53.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.964 -07 000000579 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:52:53.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.974 -07 000000625 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:52:53.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.984 -07 000000579 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:52:53.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:53.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:53.994 -07 000000629 INF: FPGA: Recv ZSGSRD 29309
17-03-18 05:52:54.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:54.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:54.004 -07 000000579 INF: FPGA: Recv ZPIEZORD 24818
17-03-18 05:52:54.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:54.014 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.8 V.
17-03-18 05:52:54.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29308 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29304 (-127.8 uncal um), Max = 29311 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:52:54.014 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 3, negNoise = 4
17-03-18 05:52:54.014 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:54.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:52:54.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:54.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:54.014 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:54.014 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:54.014 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:54.014 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:54.014 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:54.014 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:54.014 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:52:54.014 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:54.014 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:52:54.014 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:54.024 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:52:54.024 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:54.024 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:54.024 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:54.044 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 05:52:54.044 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:52:54.044 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 05:52:54.044 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:52:54.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28270 150\n [Camera]
17-03-18 05:52:54.244 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:54.454 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.986717,
17-03-18 05:52:54.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:54.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:54.694 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:54.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:54.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:54.694 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:54.694 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:54.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:54.694 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:54.704 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:54.884 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 833
17-03-18 05:52:55.034 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:55.084 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:52:55.084 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:52:55.084 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:55.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:52:55.094 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:52:55.094 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:55.094 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:55.094 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:52:55.094 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:52:55.104 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:52:55.244 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:55.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:55.244 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:55.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:55.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:55.254 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:55.254 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:55.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:52:55.254 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:55.254 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:52:55.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:52:55.444 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:55.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28270 150' command took 4 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:52:55.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:55.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128604161461865. ------
17-03-18 05:52:55.564 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:55.564 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13527 mm
17-03-18 05:52:55.564 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:55.564 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:52:55.564 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:52:55.564 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:55.574 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:52:55.574 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:55.574 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29549, sync = True, waitForSettling = False)
17-03-18 05:52:55.574 -07 000000606 INF: Z Motor: Moving to -0.135267 mm, started at -0.128604 mm, distance = -6.66 um
17-03-18 05:52:55.574 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:52:55.584 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:55.584 -07 000000629 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:55.584 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:55.584 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:55.584 -07 000000629 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:52:55.594 -07 000000606 INF: FPGA: Xmit ZDACW 29549\n [Z Motor]
17-03-18 05:52:55.594 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:55.604 -07 000000606 INF: FPGA: 'ZDACW 29549' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:52:55.604 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:55.614 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:55.614 -07 000000437 INF: FPGA: Recv ZDACR 29549
17-03-18 05:52:55.624 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:52:55.624 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:52:55.654 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:52:55.654 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:52:55.654 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:55.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:52:55.654 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:52:55.654 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:55.654 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:55.654 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:55.654 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:52:55.664 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:52:55.784 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:55.784 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:52:55.984 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:52:55.984 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-18 05:52:56.034 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:56.034 -07 000000561 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:52:56.044 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:52:56.044 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:56.044 -07 000000629 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:52:56.044 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:52:56.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:52:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:52:56.994 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:56.994 -07 000000606 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:52:57.004 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:57.004 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:57.034 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:52:57.034 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:52:57.034 -07 000000629 INF: Y Motor: Moved to 71.5181 after 1461 ms (table move)
17-03-18 05:52:57.034 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135267 mm (DAC = 29549)
17-03-18 05:52:57.034 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.044 -07 000000561 INF: FPGA: Recv ZSGSRD 30345
17-03-18 05:52:57.044 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:52:57.044 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.044 -07 000000629 INF: FPGA: Recv ZSGSRD 30357
17-03-18 05:52:57.054 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.054 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.054 -07 000000569 INF: FPGA: Recv ZSGSRD 30352
17-03-18 05:52:57.064 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:52:57.064 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.064 -07 000000437 INF: FPGA: Recv ZSGSRD 30343
17-03-18 05:52:57.074 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.074 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.074 -07 000000569 INF: FPGA: Recv ZSGSRD 30344
17-03-18 05:52:57.084 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.084 -07 000000437 INF: FPGA: Recv ZSGSRD 30349
17-03-18 05:52:57.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.094 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.094 -07 000000437 INF: FPGA: Recv ZSGSRD 30346
17-03-18 05:52:57.104 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.104 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.104 -07 000000606 INF: FPGA: Recv ZSGSRD 30345
17-03-18 05:52:57.114 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.114 -07 000000437 INF: FPGA: Recv ZSGSRD 30353
17-03-18 05:52:57.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:57.124 -07 000000606 INF: FPGA: Recv ZSGSRD 30350
17-03-18 05:52:57.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.134 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:57.134 -07 000000606 INF: FPGA: Recv ZPIEZORD 26166
17-03-18 05:52:57.144 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.2 V.
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30348 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30348 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30343 (-134.5 uncal um), Max = 30357 (-134.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30348, posNoise = 9, negNoise = 5
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: After move to -0.135267, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: Settle wait time = 1463 ms, measure time = 106 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:52:57.144 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:52:57.194 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:52:57.194 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:52:57.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:57.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:57.194 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:57.194 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:57.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:52:57.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:57.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:52:57.194 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:52:57.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:57.204 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:52:57.214 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:52:57.214 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:52:57.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:52:57.264 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:52:57.564 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:52:57.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:52:57.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:52:57.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:52:57.594 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:52:57.604 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:52:57.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:52:57.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:52:57.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:57.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:52:57.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:52:57.704 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:57.704 -07 000000629 INF: Autofocus start
17-03-18 05:52:57.704 -07 000000629 INF: MeasureProfile start
17-03-18 05:52:57.704 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:57.714 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:52:57.714 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:52:57.724 -07 000000629 INF: MeasureProfile done
17-03-18 05:52:57.724 -07 000000629 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:52:57.724 -07 000000629 INF: Autofocus finished
17-03-18 05:52:57.914 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:52:57.914 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:52:57.914 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135285342089297. ----------
17-03-18 05:52:57.914 -07 000000610 INF: Cycle	142	Tile	15	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:52:57.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28090, sync = True, waitForSettling = True)
17-03-18 05:52:57.924 -07 000000610 INF: Z Motor: Moving to -0.128588 mm, started at -0.135285 mm, distance = 6.70 um
17-03-18 05:52:57.924 -07 000000610 INF: FPGA: Xmit ZDACW 28090\n [Z Motor]
17-03-18 05:52:57.924 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:52:57.934 -07 000000610 INF: FPGA: 'ZDACW 28090' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:57.934 -07 000000569 INF: FPGA: Recv ZDACR 28090
17-03-18 05:52:57.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:57.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:52:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.094 -07 000000590 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:52:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:52:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.104 -07 000000455 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:52:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.114 -07 000000579 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:52:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.124 -07 000000579 INF: FPGA: Recv ZSGSRD 29312
17-03-18 05:52:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.134 -07 000000579 INF: FPGA: Recv ZSGSRD 29313
17-03-18 05:52:58.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.144 -07 000000579 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:52:58.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.154 -07 000000579 INF: FPGA: Recv ZSGSRD 29311
17-03-18 05:52:58.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.164 -07 000000579 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:52:58.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.174 -07 000000579 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:52:58.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:52:58.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:52:58.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:52:58.194 -07 000000579 INF: FPGA: Recv ZPIEZORD 24831
17-03-18 05:52:58.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:52:58.204 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.8 V.
17-03-18 05:52:58.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29306 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29304 (-127.8 uncal um), Max = 29313 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:52:58.204 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 5, negNoise = 4
17-03-18 05:52:58.204 -07 000000610 INF: Z Motor: After move to -0.128588, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:52:58.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:52:58.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:52:58.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:52:58.204 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:52:58.204 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:52:58.204 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:52:58.204 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:52:58.204 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:52:58.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:52:58.204 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:52:58.204 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:52:58.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:52:58.204 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:52:58.214 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:52:58.214 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:52:58.214 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:52:58.214 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:52:58.224 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:52:58.224 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:58.224 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:52:58.224 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:52:58.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28267 150\n [Camera]
17-03-18 05:52:58.424 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:52:58.864 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:52:58.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:52:58.874 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:58.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:52:58.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:52:58.874 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:58.874 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:58.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:52:58.874 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:58.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:52:59.064 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28267 832
17-03-18 05:52:59.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:52:59.254 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:52:59.254 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:52:59.254 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:59.254 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:52:59.254 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:52:59.254 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:59.254 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:59.254 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:52:59.254 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:59.264 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:52:59.424 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:52:59.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:52:59.424 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:52:59.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:52:59.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:52:59.434 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:52:59.434 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:52:59.434 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:52:59.434 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:52:59.434 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:52:59.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-18 05:52:59.614 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:52:59.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28267 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-18 05:52:59.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:52:59.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128604161461865. ------
17-03-18 05:52:59.624 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:52:59.624 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13504 mm
17-03-18 05:52:59.624 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:52:59.624 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:52:59.624 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:52:59.624 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-18 05:52:59.624 -07 000000590 INF: Z Motor: Moving to -0.135042 mm, started at -0.128604 mm, distance = -6.44 um
17-03-18 05:52:59.624 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:52:59.634 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:52:59.634 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:52:59.634 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:52:59.644 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:52:59.644 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:52:59.644 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:52:59.644 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:52:59.644 -07 000000561 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:52:59.654 -07 000000590 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-18 05:52:59.654 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:52:59.664 -07 000000590 INF: FPGA: 'ZDACW 29500' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:52:59.664 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:52:59.674 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:52:59.674 -07 000000608 INF: FPGA: Recv ZDACR 29500
17-03-18 05:52:59.684 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:52:59.684 -07 000000590 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:52:59.814 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.98264,
17-03-18 05:52:59.834 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:52:59.834 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:52:59.834 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:59.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:52:59.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:52:59.834 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:52:59.834 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:59.834 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:52:59.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:52:59.844 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:52:59.844 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-18 05:52:59.844 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:53:00.044 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:53:00.044 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 398 ms overall
17-03-18 05:53:00.094 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:00.094 -07 000000512 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:53:00.104 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:53:00.104 -07 000000561 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:00.104 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:53:00.104 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 05:53:01.054 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:01.054 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:53:01.064 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:01.064 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:01.094 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:53:01.094 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:53:01.094 -07 000000561 INF: Y Motor: Moved to 72.3491 after 1466 ms (table move)
17-03-18 05:53:01.094 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-18 05:53:01.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.094 -07 000000437 INF: FPGA: Recv ZSGSRD 30314
17-03-18 05:53:01.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:53:01.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.104 -07 000000561 INF: FPGA: Recv ZSGSRD 30310
17-03-18 05:53:01.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.114 -07 000000608 INF: FPGA: Recv ZSGSRD 30307
17-03-18 05:53:01.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.124 -07 000000561 INF: FPGA: Recv ZSGSRD 30304
17-03-18 05:53:01.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.134 -07 000000437 INF: FPGA: Recv ZSGSRD 30310
17-03-18 05:53:01.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:53:01.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.154 -07 000000590 INF: FPGA: Recv ZSGSRD 30313
17-03-18 05:53:01.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.164 -07 000000569 INF: FPGA: Recv ZSGSRD 30314
17-03-18 05:53:01.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.174 -07 000000579 INF: FPGA: Recv ZSGSRD 30304
17-03-18 05:53:01.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:01.184 -07 000000625 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:53:01.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.194 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:01.194 -07 000000608 INF: FPGA: Recv ZPIEZORD 26164
17-03-18 05:53:01.204 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.1 V.
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30311 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30304 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30311, posNoise = 5, negNoise = 7
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: After move to -0.135042, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:53:01.204 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:53:01.254 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:53:01.254 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:53:01.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:01.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:01.254 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:01.254 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:01.254 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:53:01.254 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:01.254 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:53:01.254 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:53:01.264 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:53:01.264 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:53:01.264 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:53:01.264 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:53:01.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:53:01.314 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:53:01.614 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:53:01.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:53:01.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:53:01.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:53:01.654 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:53:01.654 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:53:01.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:53:01.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:53:01.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:01.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:53:01.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:53:01.754 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:01.754 -07 000000590 INF: Autofocus start
17-03-18 05:53:01.754 -07 000000590 INF: MeasureProfile start
17-03-18 05:53:01.754 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:01.764 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:53:01.764 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:53:01.764 -07 000000590 INF: MeasureProfile done
17-03-18 05:53:01.764 -07 000000590 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:53:01.764 -07 000000590 INF: Autofocus finished
17-03-18 05:53:01.804 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:53:01.964 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:53:01.964 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:53:01.964 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135047646240051. ----------
17-03-18 05:53:01.964 -07 000000610 INF: Cycle	142	Tile	16	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:53:01.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27978, sync = True, waitForSettling = True)
17-03-18 05:53:01.974 -07 000000610 INF: Z Motor: Moving to -0.128075 mm, started at -0.135048 mm, distance = 6.97 um
17-03-18 05:53:01.974 -07 000000610 INF: FPGA: Xmit ZDACW 27978\n [Z Motor]
17-03-18 05:53:01.974 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:53:01.984 -07 000000610 INF: FPGA: 'ZDACW 27978' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:53:01.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:01.984 -07 000000437 INF: FPGA: Recv ZDACR 27978
17-03-18 05:53:01.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:01.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:53:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.144 -07 000000608 INF: FPGA: Recv ZSGSRD 29224
17-03-18 05:53:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.154 -07 000000590 INF: FPGA: Recv ZSGSRD 29224
17-03-18 05:53:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.164 -07 000000579 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:53:02.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.174 -07 000000455 INF: FPGA: Recv ZSGSRD 29225
17-03-18 05:53:02.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29228
17-03-18 05:53:02.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.194 -07 000000608 INF: FPGA: Recv ZSGSRD 29228
17-03-18 05:53:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.204 -07 000000437 INF: FPGA: Recv ZSGSRD 29226
17-03-18 05:53:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.214 -07 000000561 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:53:02.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29221
17-03-18 05:53:02.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:02.234 -07 000000590 INF: FPGA: Recv ZSGSRD 29222
17-03-18 05:53:02.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:02.244 -07 000000579 INF: FPGA: Recv ZPIEZORD 24750
17-03-18 05:53:02.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:02.254 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.8 V.
17-03-18 05:53:02.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29226 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29226 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29221 (-127.3 uncal um), Max = 29233 (-127.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:53:02.254 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29226, posNoise = 7, negNoise = 5
17-03-18 05:53:02.254 -07 000000610 INF: Z Motor: After move to -0.128075, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:02.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:53:02.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:02.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:02.254 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:02.254 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:02.254 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:53:02.254 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:02.254 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:53:02.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:53:02.254 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:53:02.254 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:53:02.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:53:02.254 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:53:02.254 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:53:02.254 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:53:02.264 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:53:02.264 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:53:02.264 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:53:02.264 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:53:02.274 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:53:02.274 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:53:02.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28155 150\n [Camera]
17-03-18 05:53:02.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:53:02.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:53:02.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:53:02.924 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:02.924 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:02.924 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:53:02.924 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:53:02.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:53:02.924 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:02.924 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:02.924 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:53:03.114 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28155 832
17-03-18 05:53:03.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:53:03.324 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:53:03.324 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:53:03.324 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:03.334 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:53:03.334 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:53:03.334 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:03.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:03.334 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:53:03.334 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:03.344 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:53:03.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-18 05:53:03.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-18 05:53:03.484 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:03.484 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:03.484 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:53:03.484 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-18 05:53:03.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-18 05:53:03.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:03.494 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:03.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:53:03.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:53:03.674 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:53:03.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28155 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-18 05:53:03.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:53:03.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128077376066241. ------
17-03-18 05:53:03.804 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:03.804 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13461 mm
17-03-18 05:53:03.804 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:53:03.804 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:53:03.814 -07 000000455 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:53:03.814 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:03.814 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:53:03.814 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29405, sync = True, waitForSettling = False)
17-03-18 05:53:03.814 -07 000000569 INF: Z Motor: Moving to -0.134607 mm, started at -0.128077 mm, distance = -6.53 um
17-03-18 05:53:03.814 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:53:03.824 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:03.824 -07 000000437 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:53:03.834 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:53:03.834 -07 000000455 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:03.834 -07 000000455 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:53:03.834 -07 000000455 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:53:03.834 -07 000000569 INF: FPGA: Xmit ZDACW 29405\n [Z Motor]
17-03-18 05:53:03.834 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:53:03.844 -07 000000569 INF: FPGA: 'ZDACW 29405' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:53:03.844 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:03.844 -07 000000561 INF: FPGA: Recv ZDACR 29405
17-03-18 05:53:03.854 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:03.854 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:53:03.854 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:53:03.884 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:53:03.884 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:53:03.884 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:03.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:53:03.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:53:03.894 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:03.894 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:03.894 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:53:03.894 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:53:03.904 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:53:04.014 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:53:04.014 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:53:04.224 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:53:04.224 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:53:04.274 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:04.284 -07 000000479 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:53:04.284 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 05:53:04.284 -07 000000455 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:04.284 -07 000000455 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:53:04.284 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 05:53:05.174 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.983999,
17-03-18 05:53:05.234 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:05.234 -07 000000437 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:53:05.244 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:05.244 -07 000000455 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:05.274 -07 000000455 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:53:05.274 -07 000000455 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:53:05.274 -07 000000455 INF: Y Motor: Moved to 73.1753 after 1461 ms (table move)
17-03-18 05:53:05.274 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134607 mm (DAC = 29405)
17-03-18 05:53:05.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.274 -07 000000591 INF: FPGA: Recv ZSGSRD 30246
17-03-18 05:53:05.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:53:05.284 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.284 -07 000000437 INF: FPGA: Recv ZSGSRD 30236
17-03-18 05:53:05.294 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.294 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.294 -07 000000561 INF: FPGA: Recv ZSGSRD 30242
17-03-18 05:53:05.304 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.304 -07 000000591 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:53:05.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.314 -07 000000561 INF: FPGA: Recv ZSGSRD 30246
17-03-18 05:53:05.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.324 -07 000000437 INF: FPGA: Recv ZSGSRD 30243
17-03-18 05:53:05.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.334 -07 000000455 INF: FPGA: Recv ZSGSRD 30244
17-03-18 05:53:05.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.344 -07 000000437 INF: FPGA: Recv ZSGSRD 30239
17-03-18 05:53:05.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.354 -07 000000591 INF: FPGA: Recv ZSGSRD 30238
17-03-18 05:53:05.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:05.364 -07 000000625 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:53:05.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.374 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:05.374 -07 000000479 INF: FPGA: Recv ZPIEZORD 26075
17-03-18 05:53:05.384 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -9.2 V.
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30243 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30244 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30236 (-133.8 uncal um), Max = 30247 (-133.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30243, posNoise = 4, negNoise = 7
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: After move to -0.134607, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:53:05.384 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:53:05.434 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:53:05.434 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:53:05.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:05.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:05.434 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:05.444 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:05.444 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:53:05.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:05.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 5 ms.
17-03-18 05:53:05.444 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:53:05.454 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:53:05.454 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:53:05.464 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:53:05.464 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:53:05.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:53:05.504 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:53:05.804 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:53:05.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:53:05.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:53:05.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:53:05.844 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:53:05.844 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:53:05.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:53:05.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:53:05.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:05.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:53:05.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:53:05.944 -07 000000591 INF: Autofocus start
17-03-18 05:53:05.944 -07 000000591 INF: MeasureProfile start
17-03-18 05:53:05.944 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:05.944 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:05.954 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:53:05.954 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:53:05.954 -07 000000591 INF: MeasureProfile done
17-03-18 05:53:05.954 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:53:05.954 -07 000000591 INF: Autofocus finished
17-03-18 05:53:06.154 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:53:06.154 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:53:06.154 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134610799814412. ----------
17-03-18 05:53:06.164 -07 000000610 INF: Cycle	142	Tile	17	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:53:06.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27929, sync = True, waitForSettling = True)
17-03-18 05:53:06.164 -07 000000610 INF: Z Motor: Moving to -0.127851 mm, started at -0.134611 mm, distance = 6.76 um
17-03-18 05:53:06.164 -07 000000610 INF: FPGA: Xmit ZDACW 27929\n [Z Motor]
17-03-18 05:53:06.164 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:53:06.174 -07 000000610 INF: FPGA: 'ZDACW 27929' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:53:06.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:06.174 -07 000000437 INF: FPGA: Recv ZDACR 27929
17-03-18 05:53:06.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:53:06.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.334 -07 000000455 INF: FPGA: Recv ZSGSRD 29192
17-03-18 05:53:06.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:06.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.344 -07 000000479 INF: FPGA: Recv ZSGSRD 29194
17-03-18 05:53:06.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.354 -07 000000625 INF: FPGA: Recv ZSGSRD 29191
17-03-18 05:53:06.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29192
17-03-18 05:53:06.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.374 -07 000000437 INF: FPGA: Recv ZSGSRD 29193
17-03-18 05:53:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.384 -07 000000479 INF: FPGA: Recv ZSGSRD 29187
17-03-18 05:53:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29189
17-03-18 05:53:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29196
17-03-18 05:53:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.414 -07 000000590 INF: FPGA: Recv ZSGSRD 29192
17-03-18 05:53:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:06.424 -07 000000455 INF: FPGA: Recv ZSGSRD 29192
17-03-18 05:53:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:06.434 -07 000000590 INF: FPGA: Recv ZPIEZORD 24707
17-03-18 05:53:06.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:06.444 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.8 V.
17-03-18 05:53:06.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29192 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29192 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29187 (-127.1 uncal um), Max = 29196 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:53:06.444 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29192, posNoise = 4, negNoise = 5
17-03-18 05:53:06.444 -07 000000610 INF: Z Motor: After move to -0.127851, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:06.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:53:06.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:06.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:06.444 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:06.444 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:06.444 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:53:06.444 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:06.444 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:53:06.444 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:53:06.444 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:53:06.444 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:53:06.444 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:53:06.444 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:53:06.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:53:06.454 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:53:06.454 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:53:06.454 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:53:06.464 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:53:06.464 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:53:06.464 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:53:06.464 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:53:06.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28106 150\n [Camera]
17-03-18 05:53:06.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:53:06.804 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:53:07.114 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:53:07.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:53:07.114 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:07.114 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:53:07.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:53:07.114 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:07.114 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:07.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:53:07.124 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:07.124 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:53:07.304 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28106 832
17-03-18 05:53:07.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:53:07.494 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 05:53:07.494 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 05:53:07.494 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:07.494 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:07.494 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:53:07.494 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:53:07.494 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:07.494 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:07.494 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:53:07.504 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:53:07.674 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:53:07.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:53:07.674 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:07.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:53:07.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:53:07.674 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:07.684 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:07.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:53:07.684 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:07.684 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:53:07.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:53:07.864 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:53:07.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28106 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-18 05:53:07.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:53:07.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127858952853421. ------
17-03-18 05:53:07.864 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:07.864 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13412 mm
17-03-18 05:53:07.864 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:53:07.984 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:07.984 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 05:53:07.984 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:53:07.984 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:53:07.984 -07 000000591 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:53:07.984 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29298, sync = True, waitForSettling = False)
17-03-18 05:53:07.984 -07 000000455 INF: Z Motor: Moving to -0.134118 mm, started at -0.127859 mm, distance = -6.26 um
17-03-18 05:53:07.994 -07 000000455 INF: FPGA: Xmit ZDACW 29298\n [Z Motor]
17-03-18 05:53:07.994 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:53:08.004 -07 000000455 INF: FPGA: 'ZDACW 29298' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:53:08.004 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:08.004 -07 000000437 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:53:08.014 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:08.014 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:53:08.014 -07 000000591 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:08.014 -07 000000591 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:53:08.014 -07 000000591 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:53:08.014 -07 000000502 INF: FPGA: Recv ZDACR 29298
17-03-18 05:53:08.024 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:53:08.024 -07 000000455 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:53:08.024 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:53:08.074 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:53:08.074 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:53:08.074 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:08.084 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:53:08.084 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:53:08.084 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:08.084 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:53:08.084 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:08.084 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:53:08.084 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:53:08.184 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:53:08.184 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 05:53:08.394 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 05:53:08.394 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:53:08.434 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:08.444 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:53:08.454 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:08.454 -07 000000591 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:08.454 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:53:08.454 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.189 mm/sec
17-03-18 05:53:09.404 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:09.404 -07 000000502 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:53:09.414 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.414 -07 000000591 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:09.434 -07 000000591 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:53:09.434 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:53:09.434 -07 000000591 INF: Y Motor: Moved to 74.0073 after 1447 ms (table move)
17-03-18 05:53:09.434 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134118 mm (DAC = 29298)
17-03-18 05:53:09.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30170
17-03-18 05:53:09.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 05:53:09.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.444 -07 000000424 INF: FPGA: Recv ZSGSRD 30161
17-03-18 05:53:09.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:53:09.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.454 -07 000000437 INF: FPGA: Recv ZSGSRD 30158
17-03-18 05:53:09.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30165
17-03-18 05:53:09.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.474 -07 000000437 INF: FPGA: Recv ZSGSRD 30163
17-03-18 05:53:09.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.484 -07 000000606 INF: FPGA: Recv ZSGSRD 30173
17-03-18 05:53:09.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.494 -07 000000437 INF: FPGA: Recv ZSGSRD 30169
17-03-18 05:53:09.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.504 -07 000000606 INF: FPGA: Recv ZSGSRD 30174
17-03-18 05:53:09.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.514 -07 000000437 INF: FPGA: Recv ZSGSRD 30171
17-03-18 05:53:09.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:09.524 -07 000000502 INF: FPGA: Recv ZSGSRD 30165
17-03-18 05:53:09.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:09.544 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:09.544 -07 000000606 INF: FPGA: Recv ZPIEZORD 26008
17-03-18 05:53:09.554 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.471 V. Piezo Error = -9.1 V.
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30167 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30167 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30158 (-133.3 uncal um), Max = 30174 (-133.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30167, posNoise = 7, negNoise = 9
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: After move to -0.134118, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: Settle wait time = 1451 ms, measure time = 111 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:53:09.554 -07 000000608 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 05:53:09.594 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-18 05:53:09.594 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:53:09.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:09.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:09.594 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:09.594 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:09.594 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:53:09.594 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:09.594 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:53:09.594 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:53:09.604 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:53:09.604 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:53:09.604 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:53:09.604 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:53:09.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:53:09.654 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:53:09.954 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:53:09.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:53:09.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:53:09.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:53:09.994 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:53:09.994 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:53:09.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:53:10.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:53:10.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:10.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:53:10.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:53:10.094 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:10.094 -07 000000590 INF: Autofocus start
17-03-18 05:53:10.094 -07 000000590 INF: MeasureProfile start
17-03-18 05:53:10.094 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:10.104 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:53:10.104 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:53:10.104 -07 000000590 INF: MeasureProfile done
17-03-18 05:53:10.104 -07 000000590 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 05:53:10.104 -07 000000590 INF: Autofocus finished
17-03-18 05:53:10.304 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:53:10.304 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:53:10.304 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.134122559691638. ----------
17-03-18 05:53:10.304 -07 000000610 INF: Cycle	142	Tile	18	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:53:10.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27708, sync = True, waitForSettling = True)
17-03-18 05:53:10.314 -07 000000610 INF: Z Motor: Moving to -0.126839 mm, started at -0.134123 mm, distance = 7.28 um
17-03-18 05:53:10.314 -07 000000610 INF: FPGA: Xmit ZDACW 27708\n [Z Motor]
17-03-18 05:53:10.314 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:53:10.324 -07 000000610 INF: FPGA: 'ZDACW 27708' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:53:10.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:10.324 -07 000000590 INF: FPGA: Recv ZDACR 27708
17-03-18 05:53:10.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:53:10.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.484 -07 000000606 INF: FPGA: Recv ZSGSRD 29031
17-03-18 05:53:10.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:10.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.494 -07 000000447 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:53:10.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.504 -07 000000437 INF: FPGA: Recv ZSGSRD 29043
17-03-18 05:53:10.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.514 -07 000000455 INF: FPGA: Recv ZSGSRD 29025
17-03-18 05:53:10.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.534 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 3.979922,
17-03-18 05:53:10.534 -07 000000437 INF: FPGA: Recv ZSGSRD 29037
17-03-18 05:53:10.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:53:10.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29031
17-03-18 05:53:10.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:53:10.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.574 -07 000000447 INF: FPGA: Recv ZSGSRD 29038
17-03-18 05:53:10.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.604 -07 000000437 INF: FPGA: Recv ZSGSRD 29033
17-03-18 05:53:10.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:53:10.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.614 -07 000000608 INF: FPGA: Recv ZSGSRD 29032
17-03-18 05:53:10.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:10.624 -07 000000382 INF: FPGA: Recv ZSGSRD 29032
17-03-18 05:53:10.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:10.634 -07 000000606 INF: FPGA: Recv ZPIEZORD 24532
17-03-18 05:53:10.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:10.644 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -9.9 V.
17-03-18 05:53:10.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29034 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29032 (-126.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29025 (-126.0 uncal um), Max = 29043 (-126.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:53:10.644 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29034, posNoise = 9, negNoise = 9
17-03-18 05:53:10.644 -07 000000610 INF: Z Motor: After move to -0.126839, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:10.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 05:53:10.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:10.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:10.644 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:10.644 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:53:10.644 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:53:10.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:53:10.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:10.644 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:10.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:53:10.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:53:10.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:53:10.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:53:10.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:53:10.654 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:53:10.654 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:53:10.654 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:53:10.664 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:53:10.664 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:53:10.664 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:53:10.664 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:53:10.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 27885 150\n [Camera]
17-03-18 05:53:10.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:53:11.314 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:53:11.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:53:11.314 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:11.314 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:53:11.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:53:11.314 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:11.314 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:11.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:53:11.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:11.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-18 05:53:11.504 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27885 832
17-03-18 05:53:11.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:53:11.714 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:53:11.714 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:53:11.714 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:11.714 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:11.714 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:53:11.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:53:11.724 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:53:11.724 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:11.724 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:11.734 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:53:11.804 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 141. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:53:11.874 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:53:11.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:53:11.874 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:11.874 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:11.874 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:53:11.874 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:53:11.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:53:11.874 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:11.874 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:11.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:53:12.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:53:12.064 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:53:12.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 27885 150' command took 2 ms to send, 1385 ms to get response, and 1397 ms overall
17-03-18 05:53:12.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:53:12.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126843927335023. ------
17-03-18 05:53:12.074 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 05:53:12.074 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:53:12.074 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:12.074 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:53:12.074 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:53:12.074 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29103, sync = True, waitForSettling = False)
17-03-18 05:53:12.074 -07 000000437 INF: Z Motor: Moving to -0.133225 mm, started at -0.126844 mm, distance = -6.38 um
17-03-18 05:53:12.074 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:12.084 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:53:12.084 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:12.084 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:53:12.094 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:53:12.094 -07 000000437 INF: FPGA: Xmit ZDACW 29103\n [Z Motor]
17-03-18 05:53:12.094 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:12.094 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:53:12.094 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:53:12.094 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:53:12.104 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:53:12.104 -07 000000437 INF: FPGA: 'ZDACW 29103' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:53:12.114 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:53:12.124 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:12.124 -07 000000512 INF: FPGA: Recv ZDACR 29103
17-03-18 05:53:12.134 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:53:12.134 -07 000000437 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:53:12.274 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:53:12.274 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:53:12.274 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:12.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:53:12.284 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:53:12.284 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:12.284 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:12.284 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:53:12.284 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:53:12.294 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:53:12.304 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:53:12.304 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:53:12.484 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:53:12.484 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:53:12.524 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:12.524 -07 000000608 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:53:12.534 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:12.534 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:12.534 -07 000000455 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:53:12.534 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:53:13.484 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:13.484 -07 000000629 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:53:13.494 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:13.494 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:13.514 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:53:13.514 -07 000000455 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:53:13.514 -07 000000455 INF: Y Motor: Moved to 74.8311 after 1436 ms (table move)
17-03-18 05:53:13.514 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133225 mm (DAC = 29103)
17-03-18 05:53:13.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.514 -07 000000569 INF: FPGA: Recv ZSGSRD 30028
17-03-18 05:53:13.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:53:13.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.524 -07 000000455 INF: FPGA: Recv ZSGSRD 30021
17-03-18 05:53:13.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.534 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.534 -07 000000569 INF: FPGA: Recv ZSGSRD 30026
17-03-18 05:53:13.544 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.544 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30022
17-03-18 05:53:13.554 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.554 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.554 -07 000000455 INF: FPGA: Recv ZSGSRD 30032
17-03-18 05:53:13.564 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.564 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.564 -07 000000455 INF: FPGA: Recv ZSGSRD 30036
17-03-18 05:53:13.574 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.574 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.574 -07 000000569 INF: FPGA: Recv ZSGSRD 30027
17-03-18 05:53:13.584 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.584 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.584 -07 000000455 INF: FPGA: Recv ZSGSRD 30028
17-03-18 05:53:13.594 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.594 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.594 -07 000000569 INF: FPGA: Recv ZSGSRD 30027
17-03-18 05:53:13.604 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.604 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:13.604 -07 000000608 INF: FPGA: Recv ZSGSRD 30029
17-03-18 05:53:13.614 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.614 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:13.614 -07 000000455 INF: FPGA: Recv ZPIEZORD 25877
17-03-18 05:53:13.624 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.1 V.
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30028 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30021 (-132.4 uncal um), Max = 30036 (-132.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30028, posNoise = 8, negNoise = 7
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: After move to -0.133225, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-18 05:53:13.624 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:53:13.674 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 05:53:13.674 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:53:13.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:13.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:13.674 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:13.674 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:13.674 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:53:13.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:13.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:53:13.674 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:53:13.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:53:13.684 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:53:13.684 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:53:13.684 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:53:13.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:53:13.734 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:53:14.034 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:53:14.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:53:14.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:53:14.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-18 05:53:14.074 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:53:14.074 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:53:14.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:53:14.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:53:14.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:14.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:53:14.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:53:14.174 -07 000000447 INF: Autofocus start
17-03-18 05:53:14.174 -07 000000447 INF: MeasureProfile start
17-03-18 05:53:14.174 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:53:14.174 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:53:14.184 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:53:14.184 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:53:14.184 -07 000000447 INF: MeasureProfile done
17-03-18 05:53:14.184 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:53:14.184 -07 000000447 INF: Autofocus finished
17-03-18 05:53:14.384 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:53:14.384 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:53:14.384 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133229594203933. ----------
17-03-18 05:53:14.384 -07 000000610 INF: Cycle	142	Tile	19	Exposure Settings		A	447	G	215	T	215	C	447
17-03-18 05:53:14.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27628, sync = True, waitForSettling = True)
17-03-18 05:53:14.394 -07 000000610 INF: Z Motor: Moving to -0.126473 mm, started at -0.133230 mm, distance = 6.76 um
17-03-18 05:53:14.394 -07 000000610 INF: FPGA: Xmit ZDACW 27628\n [Z Motor]
17-03-18 05:53:14.394 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:53:14.404 -07 000000610 INF: FPGA: 'ZDACW 27628' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:53:14.404 -07 000000606 INF: FPGA: Recv ZDACR 27628
17-03-18 05:53:14.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:53:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.564 -07 000000606 INF: FPGA: Recv ZSGSRD 28980
17-03-18 05:53:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.574 -07 000000606 INF: FPGA: Recv ZSGSRD 28981
17-03-18 05:53:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.584 -07 000000606 INF: FPGA: Recv ZSGSRD 28980
17-03-18 05:53:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.604 -07 000000382 INF: FPGA: Recv ZSGSRD 28979
17-03-18 05:53:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:53:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.614 -07 000000382 INF: FPGA: Recv ZSGSRD 28982
17-03-18 05:53:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.624 -07 000000629 INF: FPGA: Recv ZSGSRD 28975
17-03-18 05:53:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.634 -07 000000629 INF: FPGA: Recv ZSGSRD 28973
17-03-18 05:53:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.644 -07 000000629 INF: FPGA: Recv ZSGSRD 28974
17-03-18 05:53:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.654 -07 000000447 INF: FPGA: Recv ZSGSRD 28983
17-03-18 05:53:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:53:14.664 -07 000000447 INF: FPGA: Recv ZSGSRD 28979
17-03-18 05:53:14.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:53:14.674 -07 000000447 INF: FPGA: Recv ZPIEZORD 24452
17-03-18 05:53:14.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:53:14.684 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.216 V. Piezo Error = -9.9 V.
17-03-18 05:53:14.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28979 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28980 (-125.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28973 (-125.7 uncal um), Max = 28983 (-125.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:53:14.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28979, posNoise = 4, negNoise = 6
17-03-18 05:53:14.684 -07 000000610 INF: Z Motor: After move to -0.126473, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:53:14.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 05:53:14.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:53:14.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:53:14.684 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:53:14.684 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:53:14.684 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:53:14.684 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:53:14.684 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:53:14.684 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:53:14.684 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:53:14.684 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:53:14.684 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:53:14.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:53:14.684 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:53:14.684 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:53:14.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:53:14.684 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:53:14.704 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:53:14.704 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:53:14.704 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:53:14.704 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:53:14.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 27804 150\n [Camera]
17-03-18 05:53:14.904 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:53:15.354 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-18 05:53:15.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-18 05:53:15.354 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:15.354 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:15.354 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:53:15.354 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-18 05:53:15.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-18 05:53:15.354 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:15.354 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:15.354 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:53:15.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27804 832
17-03-18 05:53:15.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-18 05:53:15.744 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:53:15.744 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:53:15.744 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:15.754 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:53:15.754 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:53:15.754 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:15.754 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:15.754 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:53:15.754 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:15.764 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:53:15.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-18 05:53:15.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-18 05:53:15.914 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:53:15.914 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:53:15.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:53:15.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-18 05:53:15.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-18 05:53:15.914 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:53:15.914 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:53:15.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:53:15.924 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.005817,
17-03-18 05:53:16.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:53:16.104 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:53:16.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 27804 150' command took 2 ms to send, 1384 ms to get response, and 1396 ms overall
17-03-18 05:53:16.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:53:16.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:53:16.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:16.304 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:53:16.304 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:53:16.304 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:53:16.304 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:53:16.304 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:53:16.304 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:53:16.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:53:16.314 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:53:16.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 05:53:16.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:53:16.394 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:53:16.404 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 05:53:16.404 -07 000000610 INF: Imaging Cycle 142: ScanTilesCommand Cycle 142 time end. Duration was 168647 ms.
17-03-18 05:53:16.404 -07 000000610 INF: =================== Cycle #142 ===================
17-03-18 05:53:16.404 -07 000000610 INF: ===================  ===================
17-03-18 05:53:16.404 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:53:16.414 -07 000000629 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 05:53:16.414 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:53:16.414 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 05:53:16.414 -07 000000382 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 142, FrontChillerTemperature: 4.005817, FrontChillerHeatSinkTemperature: 0.613056, AmbientTemperature: 18.71265, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.39075, GreenLEDSensorTemperature: 27.43289, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 05:53:16.524 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.