17-03-18 05:53:16.574 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:16.574 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:53:16.574 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:53:16.574 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:16.574 -07 000000629 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:53:16.584 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:53:16.584 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:16.584 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:53:16.584 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:53:16.584 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:53:16.694 -07 000000629 INF: FPGA: Recv YMVTO 154378 873
17-03-18 05:53:16.694 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-18 05:53:16.694 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:53:16.694 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 873 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:53:16.694 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 05:53:16.804 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:16.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:53:19.694 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:53:19.694 -07 000000512 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:53:19.704 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:53:19.704 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:53:19.744 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:53:19.744 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:53:19.744 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3165 ms
17-03-18 05:53:19.744 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 60° ===================
17-03-18 05:53:19.744 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:53:19.744 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:53:19.754 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:53:19.754 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:53:19.754 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:53:19.754 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 05:53:19.764 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:53:19.764 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 60° ===================
17-03-18 05:53:19.764 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:19.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:53:19.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:19.794 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:53:19.794 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:53:19.794 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:53:20.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:53:20.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:53:20.114 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:53:20.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:20.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:53:20.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:53:20.284 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:20.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:20.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:20.314 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:53:20.314 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:53:20.314 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:53:20.444 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:53:20.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:21.384 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.975845,
17-03-18 05:53:21.804 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1901, R2=1976, Total=3877. Warn if over 250 bubbles per interval.
17-03-18 05:53:23.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:23.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:24.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:24.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:24.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:24.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:24.544 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:53:24.544 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:24.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:24.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:53:24.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:53:24.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:24.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:53:24.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:53:24.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:53:24.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:53:25.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:25.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:25.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:25.484 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:53:25.484 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:26.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:53:26.704 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:53:26.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:26.724 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:53:26.724 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:53:26.724 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:53:26.744 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.981281,
17-03-18 05:53:26.804 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 05:53:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1905, R2=1980, Total=3885. Warn if over 250 bubbles per interval.
17-03-18 05:53:26.864 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:53:26.884 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:53:26.884 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:53:26.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:26.954 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:53:26.954 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:53:27.054 -07 000000610 INF: =================== Cycle #143, Pumping Reagent CMS (4) ===================
17-03-18 05:53:27.054 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:27.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:27.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:53:27.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:53:27.084 -07 000000610 INF: =================== Cycle #143, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:53:27.214 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:53:27.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:28.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:28.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:29.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:29.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:29.174 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:53:29.174 -07 000000610 INF: =================== Cycle #143, Pumping Reagent CMS (4) ===================
17-03-18 05:53:29.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:29.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:53:29.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:53:29.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:29.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:53:29.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:53:29.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:53:29.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:53:29.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:30.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:30.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:30.114 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:53:30.114 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:31.334 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:53:31.334 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:53:31.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:31.354 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:53:31.354 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:53:31.354 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:53:31.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:53:31.524 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:53:31.524 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:53:31.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:31.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:53:31.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:53:31.694 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:31.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:31.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:31.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:53:31.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:53:31.724 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:53:31.804 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1905, R2=1980, Total=3885. Warn if over 250 bubbles per interval.
17-03-18 05:53:31.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:53:31.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:32.104 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.008536,
17-03-18 05:53:32.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:32.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:32.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:53:32.794 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:32.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:32.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:53:32.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:53:33.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:33.114 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:53:33.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:53:33.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:53:33.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:53:33.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:33.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:33.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:33.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:53:33.734 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:33.734 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:53:33.734 -07 000000569 INF: WaitCommand(10000) start
17-03-18 05:53:33.734 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:53:34.954 -07 000000462 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:53:34.954 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 05:53:34.984 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:53:34.984 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:53:35.114 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:53:35.154 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:36.684 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:36.714 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:36.804 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:36.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1905, R2=1980, Total=3885. Warn if over 250 bubbles per interval.
17-03-18 05:53:37.134 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:37.164 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:37.164 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:53:37.164 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:53:37.164 -07 000000462 INF: ===================  ===================
17-03-18 05:53:37.464 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.016692,
17-03-18 05:53:41.804 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:41.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1905, R2=1980, Total=3885. Warn if over 250 bubbles per interval.
17-03-18 05:53:43.494 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.997626,
17-03-18 05:53:43.744 -07 000000569 INF: WaitCommand(10000) end
17-03-18 05:53:43.744 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:43.744 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:43.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:43.774 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:53:43.774 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:53:43.774 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:53:43.904 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:53:43.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:46.804 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1905, R2=1980, Total=3885. Warn if over 250 bubbles per interval.
17-03-18 05:53:48.854 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.979922,
17-03-18 05:53:50.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:50.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:50.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:50.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:50.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:51.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:51.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:51.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:51.804 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 2
17-03-18 05:53:51.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=2, R2=4, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:53:51.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:51.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:51.904 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:53:51.904 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:52.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:52.064 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:53:52.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:53:52.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:52.224 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:53:52.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:53:52.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:53:52.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:53:52.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:52.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:52.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:52.844 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:53:52.844 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:54.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:53:54.064 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:53:54.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:54.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:53:54.084 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:53:54.084 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:53:54.214 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.003063,
17-03-18 05:53:54.294 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:53:54.314 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:53:54.314 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:53:54.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:54.384 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:53:54.384 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:53:54.484 -07 000000610 INF: =================== Cycle #143, Pumping Reagent IMT (1) ===================
17-03-18 05:53:54.484 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:54.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:54.514 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:53:54.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:53:54.514 -07 000000610 INF: =================== Cycle #143, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:53:54.644 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:53:54.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:56.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:56.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:53:56.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:56.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:56.604 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:53:56.604 -07 000000610 INF: =================== Cycle #143, Pumping Reagent IMT (1) ===================
17-03-18 05:53:56.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:56.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:53:56.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:53:56.804 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:53:56.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:53:56.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:56.924 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:53:56.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:53:56.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:53:57.054 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:53:57.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:57.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:53:57.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:53:57.544 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:53:57.544 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:53:58.764 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:53:58.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:53:58.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:58.784 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:53:58.784 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:53:58.784 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:53:59.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:53:59.034 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:53:59.034 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:53:59.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:53:59.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:53:59.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:53:59.204 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:53:59.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:53:59.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:53:59.234 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:53:59.234 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:53:59.234 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:53:59.364 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:53:59.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:54:00.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:00.314 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.008536,
17-03-18 05:54:00.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:00.324 -07 000000610 INF: LanePump: Waited 919 ms for pump motion to complete
17-03-18 05:54:00.324 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:54:00.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:54:00.484 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:54:00.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:54:00.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:54:00.644 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:54:00.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:54:00.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:54:00.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:54:00.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:01.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:01.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:01.264 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:54:01.264 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:54:01.264 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 65° ===================
17-03-18 05:54:01.264 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:54:01.264 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:54:01.264 -07 000000447 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:54:01.274 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:54:01.274 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:54:01.274 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 05:54:01.284 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:54:01.284 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 65° ===================
17-03-18 05:54:01.284 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:54:01.284 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:54:01.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:01.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:05.674 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.009895,
17-03-18 05:54:06.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:11.034 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.996267,
17-03-18 05:54:11.804 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:11.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:16.394 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.989471,
17-03-18 05:54:17.084 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:17.084 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:21.804 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:21.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:22.424 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.988112,
17-03-18 05:54:26.804 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:26.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:27.784 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.014009,
17-03-18 05:54:31.294 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:54:31.294 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:54:31.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:54:31.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:54:31.424 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:54:31.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:54:31.424 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:54:31.554 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:54:31.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:54:31.804 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:32.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:32.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:32.164 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:54:32.164 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:54:32.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:54:32.324 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:54:32.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:54:32.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:54:32.484 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:54:32.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:54:32.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:54:32.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:54:32.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:33.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:33.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:33.104 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:54:33.104 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:54:33.104 -07 000000437 INF: WaitCommand(30000) start
17-03-18 05:54:33.104 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:54:33.104 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:54:33.144 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.008536,
17-03-18 05:54:34.324 -07 000000512 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:54:34.324 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 05:54:34.354 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:54:34.354 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:54:34.484 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:54:34.524 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:54:36.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:36.864 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:36.894 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:54:37.314 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:54:37.344 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:54:37.344 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:54:37.344 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:54:37.344 -07 000000512 INF: ===================  ===================
17-03-18 05:54:38.504 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.024884,
17-03-18 05:54:41.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:43.864 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.000345,
17-03-18 05:54:46.804 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:49.224 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.011254,
17-03-18 05:54:51.814 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:54.584 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.018051,
17-03-18 05:54:56.814 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:54:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:54:59.944 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.997626,
17-03-18 05:55:01.814 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:01.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:03.114 -07 000000437 INF: WaitCommand(30000) end
17-03-18 05:55:03.114 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 22° ===================
17-03-18 05:55:03.114 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:55:03.114 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:55:03.124 -07 000000487 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:55:03.124 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 3 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:03.124 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:55:03.124 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 05:55:03.134 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:03.134 -07 000000610 INF: =================== Cycle #143, Flow Cell Temp 22° ===================
17-03-18 05:55:03.134 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:55:03.134 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:55:03.134 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:55:03.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:03.174 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:55:03.174 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:55:03.174 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:55:03.304 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:55:03.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:05.304 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.000345,
17-03-18 05:55:06.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:06.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:06.814 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:06.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:06.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:07.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:07.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:07.404 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:55:07.404 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:55:07.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:07.564 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:55:07.564 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:55:07.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:07.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:55:07.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:55:07.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:55:07.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:55:07.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:08.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:08.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:08.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:55:08.344 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:55:09.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:55:09.564 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:55:09.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:09.584 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:55:09.584 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:55:09.584 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:55:09.734 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:55:09.754 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:55:09.754 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:55:09.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:09.824 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:55:09.824 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:55:09.924 -07 000000610 INF: =================== Cycle #143, Pumping Reagent USM (2) ===================
17-03-18 05:55:09.924 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:55:09.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:09.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:55:09.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:55:09.954 -07 000000610 INF: =================== Cycle #143, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:55:10.084 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:55:10.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:10.664 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.003063,
17-03-18 05:55:11.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:11.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:11.814 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:12.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:12.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:12.044 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:55:12.044 -07 000000610 INF: =================== Cycle #143, Pumping Reagent USM (2) ===================
17-03-18 05:55:12.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:12.204 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:55:12.204 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:55:12.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:12.364 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:55:12.364 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:55:12.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:55:12.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:55:12.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:12.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:12.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:12.984 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:55:12.984 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:55:14.204 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:55:14.204 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:55:14.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:14.224 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:55:14.224 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:55:14.224 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:55:14.374 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:55:14.394 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:55:14.394 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:55:14.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:14.464 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:55:14.464 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:55:14.564 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:55:14.564 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:55:14.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:14.594 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:55:14.594 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:55:14.594 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:55:14.724 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:55:14.764 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:15.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:15.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:15.664 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:55:15.664 -07 000000610 INF: =================== Cycle #143, Pumping Reagent PR2 (3) ===================
17-03-18 05:55:15.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:15.824 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:55:15.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:55:15.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:55:15.984 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:55:15.984 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:55:15.984 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:55:16.024 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.02213,
17-03-18 05:55:16.114 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:55:16.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:16.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:16.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:16.604 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:55:16.604 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:55:16.604 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:55:16.604 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:55:16.604 -07 000000444 INF: WaitCommand(10000) start
17-03-18 05:55:17.454 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:17.454 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:17.824 -07 000000512 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:55:17.824 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 05:55:17.854 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:55:17.854 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:55:17.984 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:55:18.024 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:19.554 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:19.584 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:55:20.004 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 05:55:20.034 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:55:20.034 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:55:20.034 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:55:20.034 -07 000000512 INF: ===================  ===================
17-03-18 05:55:21.384 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.994908,
17-03-18 05:55:21.814 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:26.614 -07 000000444 INF: WaitCommand(10000) end
17-03-18 05:55:26.614 -07 000000610 INF: =================== Cycle #143, Imaging ===================
17-03-18 05:55:26.614 -07 000000610 INF: Imaging Cycle 143: ScanTilesCommand Cycle 143 time start.
17-03-18 05:55:26.614 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:55:26.614 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:26.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:55:26.644 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:55:26.644 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:55:26.744 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.007176,
17-03-18 05:55:26.814 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:26.944 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:55:26.964 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:55:26.964 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:55:27.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:55:27.034 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:55:27.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:27.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:27.034 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:55:27.034 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:27.034 -07 000000606 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:55:27.654 -07 000000462 INF: FPGA: Recv EXLED1ON 
17-03-18 05:55:27.654 -07 000000606 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 610 ms to get response, and 615 ms overall
17-03-18 05:55:27.654 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:55:27.654 -07 000000447 INF: FPGA: Recv EXLED1ADCR 22695
17-03-18 05:55:27.664 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:27.664 -07 000000606 INF: RedLED: Using Red data: Photodiode ADC 22695 --> 7.3 mW (old method), or 201.4 mW (new method). Difference = 194.1 mW
17-03-18 05:55:27.664 -07 000000606 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:55:27.664 -07 000000487 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:55:27.674 -07 000000606 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:27.674 -07 000000606 INF: RedLED: LED was on for 19 ms
17-03-18 05:55:27.674 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 635 ms.
17-03-18 05:55:27.674 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:55:27.674 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:27.674 -07 000000606 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:55:27.674 -07 000000581 INF: FPGA: Recv EXLED2ON 
17-03-18 05:55:27.684 -07 000000606 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:27.684 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:55:27.684 -07 000000455 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 05:55:27.694 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:27.694 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 05:55:27.694 -07 000000606 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:55:27.694 -07 000000444 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:55:27.704 -07 000000606 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:27.704 -07 000000606 INF: GreenLED: LED was on for 19 ms
17-03-18 05:55:27.704 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:55:27.704 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:55:27.704 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 05:55:27.714 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:27.714 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:55:28.214 -07 000000581 INF: FPGA: Recv EMOUT
17-03-18 05:55:28.214 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:55:28.214 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:55:28.214 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 05:55:28.224 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:28.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:28.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126490595667226. ------
17-03-18 05:55:28.224 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:28.224 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17844 mm
17-03-18 05:55:28.224 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:28.224 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:28.224 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:55:28.224 -07 000000447 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 05:55:28.224 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38980, sync = True, waitForSettling = False)
17-03-18 05:55:28.224 -07 000000606 INF: Z Motor: Moving to -0.178439 mm, started at -0.126491 mm, distance = -51.95 um
17-03-18 05:55:28.234 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:28.234 -07 000000606 INF: FPGA: Xmit ZDACW 38980\n [Z Motor]
17-03-18 05:55:28.234 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:55:28.244 -07 000000606 INF: FPGA: 'ZDACW 38980' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:28.244 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:28.254 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:28.254 -07 000000512 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:55:28.264 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:28.264 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:55:28.264 -07 000000447 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:28.264 -07 000000447 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:55:28.264 -07 000000447 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:55:28.264 -07 000000480 INF: FPGA: Recv ZDACR 38980
17-03-18 05:55:28.274 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:55:28.274 -07 000000606 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:55:28.274 -07 000000447 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:55:28.444 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:28.444 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:55:29.954 -07 000000437 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 05:55:29.954 -07 000000447 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1696 ms overall
17-03-18 05:55:29.954 -07 000000447 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:55:29.954 -07 000000447 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%).
17-03-18 05:55:29.954 -07 000000447 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1696 ms, distance = 15.468 mm, average velocity = 9.120 mm/sec
17-03-18 05:55:31.814 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:32.104 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.007176,
17-03-18 05:55:32.804 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:32.804 -07 000000437 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:55:32.814 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:32.814 -07 000000447 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:32.844 -07 000000447 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:32.844 -07 000000447 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:55:32.844 -07 000000447 INF: Y Motor: Moved to 59.9097 after 4612 ms
17-03-18 05:55:32.844 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178439 mm (DAC = 38980)
17-03-18 05:55:32.844 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.844 -07 000000611 INF: FPGA: Recv ZSGSRD 37072
17-03-18 05:55:32.854 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:32.854 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.854 -07 000000447 INF: FPGA: Recv ZSGSRD 37067
17-03-18 05:55:32.864 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.864 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.864 -07 000000447 INF: FPGA: Recv ZSGSRD 37061
17-03-18 05:55:32.874 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.874 -07 000000611 INF: FPGA: Recv ZSGSRD 37065
17-03-18 05:55:32.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.884 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.884 -07 000000447 INF: FPGA: Recv ZSGSRD 37069
17-03-18 05:55:32.894 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.894 -07 000000611 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:55:32.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.904 -07 000000611 INF: FPGA: Recv ZSGSRD 37069
17-03-18 05:55:32.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.914 -07 000000447 INF: FPGA: Recv ZSGSRD 37067
17-03-18 05:55:32.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.924 -07 000000581 INF: FPGA: Recv ZSGSRD 37065
17-03-18 05:55:32.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:32.934 -07 000000447 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:55:32.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.944 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:32.944 -07 000000444 INF: FPGA: Recv ZPIEZORD 33321
17-03-18 05:55:32.954 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.3 V.
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37067 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37067 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37061 (-177.5 uncal um), Max = 37072 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37067, posNoise = 5, negNoise = 6
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: After move to -0.178439, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: Settle wait time = 4615 ms, measure time = 105 ms (allowed 150 ms), total time = 4720 ms
17-03-18 05:55:32.954 -07 000000487 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:33.004 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 05:55:33.004 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:33.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:33.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:33.004 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:33.004 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:33.004 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:33.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:33.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:33.004 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:55:33.034 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:55:33.034 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:33.034 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:33.034 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:33.034 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:55:33.044 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-18 05:55:33.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:33.084 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:33.384 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:33.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:33.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:33.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575670224, 0x0, 559484976) start.
17-03-18 05:55:33.424 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:33.424 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:33.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:55:33.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575670224, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:55:33.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:33.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:33.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:55:33.624 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:33.624 -07 000000447 INF: Image SNR check: start
17-03-18 05:55:33.624 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:33.634 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:33.634 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:33.634 -07 000000447 INF: Image SNR check: pass  [peak (Max-Min)=130.37]
17-03-18 05:55:33.634 -07 000000447 INF: Autofocus start
17-03-18 05:55:33.644 -07 000000447 INF: MeasureProfile start
17-03-18 05:55:33.644 -07 000000447 INF: MeasureProfile done
17-03-18 05:55:33.654 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:55:33.654 -07 000000447 INF: Autofocus finished
17-03-18 05:55:33.834 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:33.834 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:55:33.834 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178449623469788. ----------
17-03-18 05:55:33.834 -07 000000610 INF: Cycle	143	Tile	1	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:33.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37495, sync = True, waitForSettling = True)
17-03-18 05:55:33.844 -07 000000610 INF: Z Motor: Moving to -0.171641 mm, started at -0.178450 mm, distance = 6.81 um
17-03-18 05:55:33.844 -07 000000610 INF: FPGA: Xmit ZDACW 37495\n [Z Motor]
17-03-18 05:55:33.844 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:55:33.854 -07 000000610 INF: FPGA: 'ZDACW 37495' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:33.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:33.854 -07 000000512 INF: FPGA: Recv ZDACR 37495
17-03-18 05:55:33.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:33.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:34.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.014 -07 000000455 INF: FPGA: Recv ZSGSRD 36007
17-03-18 05:55:34.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:34.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.024 -07 000000455 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:55:34.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.034 -07 000000444 INF: FPGA: Recv ZSGSRD 36008
17-03-18 05:55:34.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.044 -07 000000444 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:55:34.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.054 -07 000000444 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:55:34.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.064 -07 000000444 INF: FPGA: Recv ZSGSRD 36008
17-03-18 05:55:34.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:34.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.074 -07 000000444 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:55:34.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.084 -07 000000447 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:55:34.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.094 -07 000000012 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:55:34.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:34.104 -07 000000012 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:55:34.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:34.114 -07 000000512 INF: FPGA: Recv ZPIEZORD 31911
17-03-18 05:55:34.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:34.124 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -9.0 V.
17-03-18 05:55:34.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36009 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36008 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36004 (-170.7 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:55:34.124 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36009, posNoise = 6, negNoise = 5
17-03-18 05:55:34.124 -07 000000610 INF: Z Motor: After move to -0.171641, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:34.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:55:34.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:34.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:34.124 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:34.124 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:34.124 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:34.124 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:34.124 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:34.124 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:34.124 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:55:34.124 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:55:34.124 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:55:34.124 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:34.134 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:34.134 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:34.144 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:55:34.144 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:55:34.144 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 05:55:34.144 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:34.154 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:55:34.154 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:34.164 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:55:34.164 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-18 05:55:34.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37672 150\n [Camera]
17-03-18 05:55:34.374 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:34.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:34.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:34.824 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:34.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:34.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:34.824 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:34.824 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:34.824 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-18 05:55:34.834 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:34.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:55:35.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37672 833
17-03-18 05:55:35.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:35.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:55:35.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:55:35.214 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:35.214 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:35.214 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:55:35.214 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:55:35.214 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:35.224 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:35.224 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:55:35.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:55:35.374 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:35.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:35.374 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:35.384 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:35.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:35.384 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:35.514 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:35.514 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 05:55:35.514 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:35.514 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:55:35.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:55:35.564 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:35.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37672 150' command took 2 ms to send, 1389 ms to get response, and 1398 ms overall
17-03-18 05:55:35.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:35.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171652807023805. ------
17-03-18 05:55:35.574 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:35.574 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17790 mm
17-03-18 05:55:35.574 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:35.574 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:35.574 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:55:35.574 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:55:35.574 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38863, sync = True, waitForSettling = False)
17-03-18 05:55:35.574 -07 000000455 INF: Z Motor: Moving to -0.177903 mm, started at -0.171653 mm, distance = -6.25 um
17-03-18 05:55:35.584 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:35.584 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:35.584 -07 000000462 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:55:35.594 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:55:35.594 -07 000000012 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:35.594 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:35.594 -07 000000012 INF: Y Motor: Moving 1333 steps0
17-03-18 05:55:35.594 -07 000000455 INF: FPGA: Xmit ZDACW 38863\n [Z Motor]
17-03-18 05:55:35.594 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:55:35.604 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:35.604 -07 000000455 INF: FPGA: 'ZDACW 38863' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:55:35.614 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:35.624 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:35.624 -07 000000487 INF: FPGA: Recv ZDACR 38863
17-03-18 05:55:35.634 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:55:35.634 -07 000000455 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:55:35.804 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:35.804 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:55:35.914 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:55:35.914 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:55:35.914 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:35.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:55:35.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:55:35.924 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:35.924 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:35.924 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-18 05:55:35.924 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:35.934 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 550 ms.
17-03-18 05:55:35.994 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:55:35.994 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 05:55:36.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:36.034 -07 000000437 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:55:36.044 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:55:36.044 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:36.044 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:55:36.044 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.833 mm, average velocity = 2.077 mm/sec
17-03-18 05:55:36.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:36.994 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:36.994 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:55:37.004 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:37.004 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:37.034 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:37.034 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:55:37.034 -07 000000012 INF: Y Motor: Moved to 60.7319 after 1456 ms (table move)
17-03-18 05:55:37.034 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177903 mm (DAC = 38863)
17-03-18 05:55:37.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.044 -07 000000611 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:55:37.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:55:37.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.044 -07 000000611 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:55:37.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.054 -07 000000611 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:55:37.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.064 -07 000000611 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:55:37.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.074 -07 000000611 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:55:37.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.084 -07 000000611 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:55:37.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.094 -07 000000611 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:55:37.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.104 -07 000000611 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:55:37.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.114 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.114 -07 000000611 INF: FPGA: Recv ZSGSRD 36990
17-03-18 05:55:37.124 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:37.124 -07 000000611 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:55:37.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.134 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:37.134 -07 000000455 INF: FPGA: Recv ZPIEZORD 33234
17-03-18 05:55:37.144 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.3 V.
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36983 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36984 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36975 (-177.0 uncal um), Max = 36990 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36983, posNoise = 7, negNoise = 8
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: After move to -0.177903, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:55:37.144 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:37.194 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:55:37.194 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:37.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:37.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:37.194 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:37.194 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:37.194 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:37.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:37.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:37.194 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:37.204 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:37.204 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:37.214 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:55:37.214 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:55:37.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:37.264 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:37.464 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.971733,
17-03-18 05:55:37.564 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:37.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:37.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:37.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575670224, 0x0, 559484976) start.
17-03-18 05:55:37.604 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:37.604 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:37.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 05:55:37.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575670224, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:55:37.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:37.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:37.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:55:37.704 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:37.704 -07 000000012 INF: Autofocus start
17-03-18 05:55:37.704 -07 000000012 INF: MeasureProfile start
17-03-18 05:55:37.704 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:37.714 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:37.714 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:37.714 -07 000000012 INF: MeasureProfile done
17-03-18 05:55:37.714 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:55:37.714 -07 000000012 INF: Autofocus finished
17-03-18 05:55:37.914 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:37.914 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:55:37.914 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.17790998964988. ----------
17-03-18 05:55:37.914 -07 000000610 INF: Cycle	143	Tile	2	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:37.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37377, sync = True, waitForSettling = True)
17-03-18 05:55:37.924 -07 000000610 INF: Z Motor: Moving to -0.171101 mm, started at -0.177910 mm, distance = 6.81 um
17-03-18 05:55:37.924 -07 000000610 INF: FPGA: Xmit ZDACW 37377\n [Z Motor]
17-03-18 05:55:37.924 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:55:37.934 -07 000000610 INF: FPGA: 'ZDACW 37377' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:37.934 -07 000000611 INF: FPGA: Recv ZDACR 37377
17-03-18 05:55:37.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:37.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.094 -07 000000012 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:55:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.104 -07 000000611 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:55:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.114 -07 000000462 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:55:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.124 -07 000000455 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:55:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:55:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.144 -07 000000455 INF: FPGA: Recv ZSGSRD 35932
17-03-18 05:55:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:55:38.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.164 -07 000000447 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:55:38.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.174 -07 000000455 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:55:38.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:38.184 -07 000000447 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:55:38.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:38.194 -07 000000455 INF: FPGA: Recv ZPIEZORD 31799
17-03-18 05:55:38.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:38.204 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.1 V.
17-03-18 05:55:38.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35924 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35921 (-170.2 uncal um), Max = 35932 (-170.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:55:38.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35924, posNoise = 8, negNoise = 3
17-03-18 05:55:38.204 -07 000000610 INF: Z Motor: After move to -0.171101, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:38.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:55:38.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:38.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:38.204 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:38.204 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:38.204 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:38.204 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:38.204 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:38.204 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:38.204 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:55:38.204 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:38.204 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:38.204 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:38.214 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:55:38.214 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:38.214 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:55:38.214 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:38.224 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:55:38.224 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:55:38.224 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 05:55:38.224 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:55:38.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37554 150\n [Camera]
17-03-18 05:55:38.434 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:38.874 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:38.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:38.884 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:38.884 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:38.884 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:55:38.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:38.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:38.884 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:38.884 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:38.884 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:55:39.074 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37554 833
17-03-18 05:55:39.224 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:39.284 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:55:39.284 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:55:39.284 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:39.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:55:39.284 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:55:39.284 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:39.284 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:39.284 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:55:39.284 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:39.294 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:55:39.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:39.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:39.434 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:39.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:39.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:39.444 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:39.444 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:55:39.444 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:39.444 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:39.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:55:39.624 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:55:39.634 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:39.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37554 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:55:39.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:39.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171106748991756. ------
17-03-18 05:55:39.754 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:39.754 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17785 mm
17-03-18 05:55:39.754 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:39.754 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:39.754 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:55:39.754 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:55:39.754 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38851, sync = True, waitForSettling = False)
17-03-18 05:55:39.754 -07 000000611 INF: Z Motor: Moving to -0.177848 mm, started at -0.171107 mm, distance = -6.74 um
17-03-18 05:55:39.764 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:39.764 -07 000000611 INF: FPGA: Xmit ZDACW 38851\n [Z Motor]
17-03-18 05:55:39.764 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:55:39.774 -07 000000611 INF: FPGA: 'ZDACW 38851' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:55:39.774 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:39.774 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:55:39.784 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:39.784 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:55:39.784 -07 000000480 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:39.784 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:39.784 -07 000000480 INF: Y Motor: Moving 1345 steps-22
17-03-18 05:55:39.794 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:39.794 -07 000000455 INF: FPGA: Recv ZDACR 38851
17-03-18 05:55:39.804 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:39.804 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:55:39.804 -07 000000611 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:55:39.844 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:55:39.844 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:55:39.844 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:39.844 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:55:39.844 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:55:39.844 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:39.844 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:39.844 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:39.844 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:55:39.854 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:55:39.984 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:39.984 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:55:40.174 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:55:40.174 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:55:40.224 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:40.234 -07 000000625 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:55:40.234 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:55:40.234 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:40.234 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:55:40.234 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 05:55:41.184 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:41.184 -07 000000512 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:55:41.194 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.194 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:41.224 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:41.224 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:55:41.224 -07 000000480 INF: Y Motor: Moved to 61.5625 after 1465 ms (table move)
17-03-18 05:55:41.224 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177848 mm (DAC = 38851)
17-03-18 05:55:41.224 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.224 -07 000000611 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:55:41.234 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:55:41.234 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.234 -07 000000487 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:55:41.244 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.244 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.244 -07 000000581 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:55:41.254 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.254 -07 000000012 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:55:41.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.264 -07 000000512 INF: FPGA: Recv ZSGSRD 36976
17-03-18 05:55:41.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.274 -07 000000012 INF: FPGA: Recv ZSGSRD 36978
17-03-18 05:55:41.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.284 -07 000000512 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:55:41.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36974
17-03-18 05:55:41.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.304 -07 000000437 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:55:41.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:41.314 -07 000000444 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:55:41.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:41.324 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:41.324 -07 000000581 INF: FPGA: Recv ZPIEZORD 33239
17-03-18 05:55:41.334 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.3 V.
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36975 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36975 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36978 (-177.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36975, posNoise = 3, negNoise = 5
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: After move to -0.177848, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:55:41.334 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:41.384 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:55:41.384 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:41.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:41.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:41.384 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:41.384 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:41.384 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:41.394 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:41.394 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:41.394 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:41.394 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:41.394 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:41.404 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:55:41.404 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:55:41.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:41.444 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:41.744 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:41.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:41.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:41.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:55:41.784 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:41.784 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:41.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:55:41.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:41.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:55:41.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:41.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:41.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:55:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:41.884 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:41.884 -07 000000480 INF: Autofocus start
17-03-18 05:55:41.884 -07 000000480 INF: MeasureProfile start
17-03-18 05:55:41.884 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:41.894 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:41.894 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:41.904 -07 000000480 INF: MeasureProfile done
17-03-18 05:55:41.904 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:55:41.904 -07 000000480 INF: Autofocus finished
17-03-18 05:55:42.094 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:42.094 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:55:42.094 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177858595952746. ----------
17-03-18 05:55:42.104 -07 000000610 INF: Cycle	143	Tile	3	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:42.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37366, sync = True, waitForSettling = True)
17-03-18 05:55:42.104 -07 000000610 INF: Z Motor: Moving to -0.171051 mm, started at -0.177859 mm, distance = 6.81 um
17-03-18 05:55:42.104 -07 000000610 INF: FPGA: Xmit ZDACW 37366\n [Z Motor]
17-03-18 05:55:42.104 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:55:42.114 -07 000000610 INF: FPGA: 'ZDACW 37366' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:42.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:42.114 -07 000000455 INF: FPGA: Recv ZDACR 37366
17-03-18 05:55:42.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.274 -07 000000581 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:55:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:42.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.284 -07 000000444 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:55:42.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.294 -07 000000455 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:55:42.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:55:42.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.324 -07 000000487 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:55:42.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 1 ms to get response, and 7 ms overall
17-03-18 05:55:42.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:55:42.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:42.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.334 -07 000000480 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:55:42.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.344 -07 000000012 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:55:42.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.354 -07 000000625 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:55:42.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:42.364 -07 000000611 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:55:42.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:42.374 -07 000000480 INF: FPGA: Recv ZPIEZORD 31797
17-03-18 05:55:42.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:42.384 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V.
17-03-18 05:55:42.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35914 (-170.2 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:55:42.384 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 3, negNoise = 4
17-03-18 05:55:42.384 -07 000000610 INF: Z Motor: After move to -0.171051, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:42.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:55:42.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:42.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:42.384 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:42.384 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:42.384 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:42.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:42.384 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:42.384 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:42.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:42.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:42.384 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:55:42.384 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:42.394 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:42.394 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:42.394 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:55:42.394 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:42.394 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:55:42.394 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:55:42.404 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:55:42.404 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:55:42.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37542 150\n [Camera]
17-03-18 05:55:42.604 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:42.824 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.009895,
17-03-18 05:55:43.054 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:43.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:43.054 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:43.054 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:43.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:43.054 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:43.054 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:43.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:55:43.064 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:43.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:55:43.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37542 833
17-03-18 05:55:43.394 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 984
17-03-18 05:55:43.464 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:55:43.464 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:55:43.464 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:43.464 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:55:43.464 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:55:43.464 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:43.464 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:43.464 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:55:43.464 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:43.474 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:55:43.614 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:43.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:43.614 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:43.614 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:43.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:55:43.614 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:43.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:43.614 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:43.614 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:43.614 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:55:43.804 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:55:43.804 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:43.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37542 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-18 05:55:43.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:43.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171068203718905. ------
17-03-18 05:55:43.804 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:43.804 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17726 mm
17-03-18 05:55:43.804 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:43.814 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:43.814 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:43.814 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:43.814 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:55:43.814 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:55:43.814 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38722, sync = True, waitForSettling = False)
17-03-18 05:55:43.814 -07 000000012 INF: Z Motor: Moving to -0.177258 mm, started at -0.171068 mm, distance = -6.19 um
17-03-18 05:55:43.824 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:43.824 -07 000000487 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:55:43.834 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:55:43.834 -07 000000462 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:43.834 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:43.834 -07 000000462 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:55:43.834 -07 000000012 INF: FPGA: Xmit ZDACW 38722\n [Z Motor]
17-03-18 05:55:43.834 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:55:43.844 -07 000000012 INF: FPGA: 'ZDACW 38722' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:55:43.844 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:43.844 -07 000000581 INF: FPGA: Recv ZDACR 38722
17-03-18 05:55:43.854 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:43.854 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:43.854 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:55:44.014 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:44.014 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:55:44.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:55:44.014 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:55:44.014 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:44.014 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:55:44.014 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:55:44.014 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:44.024 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:44.024 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:55:44.024 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:55:44.024 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:55:44.224 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:55:44.224 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:55:44.284 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:44.284 -07 000000625 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:55:44.294 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:44.294 -07 000000462 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:44.294 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:55:44.294 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:55:45.244 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:45.244 -07 000000625 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:55:45.254 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:45.254 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:45.284 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:45.284 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:55:45.284 -07 000000462 INF: Y Motor: Moved to 62.3945 after 1469 ms (table move)
17-03-18 05:55:45.284 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177258 mm (DAC = 38722)
17-03-18 05:55:45.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.284 -07 000000487 INF: FPGA: Recv ZSGSRD 36883
17-03-18 05:55:45.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:45.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.294 -07 000000606 INF: FPGA: Recv ZSGSRD 36878
17-03-18 05:55:45.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.304 -07 000000447 INF: FPGA: Recv ZSGSRD 36866
17-03-18 05:55:45.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.314 -07 000000606 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:55:45.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.324 -07 000000012 INF: FPGA: Recv ZSGSRD 36878
17-03-18 05:55:45.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.334 -07 000000487 INF: FPGA: Recv ZSGSRD 36880
17-03-18 05:55:45.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.344 -07 000000012 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:55:45.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.354 -07 000000611 INF: FPGA: Recv ZSGSRD 36889
17-03-18 05:55:45.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.364 -07 000000462 INF: FPGA: Recv ZSGSRD 36879
17-03-18 05:55:45.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:45.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36882
17-03-18 05:55:45.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.384 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:45.384 -07 000000487 INF: FPGA: Recv ZPIEZORD 33100
17-03-18 05:55:45.394 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.4 V.
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36880 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36881 (-176.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36866 (-176.3 uncal um), Max = 36889 (-176.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36880, posNoise = 9, negNoise = 14
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: After move to -0.177258, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: Settle wait time = 1473 ms, measure time = 105 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:55:45.394 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:45.444 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 05:55:45.444 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:45.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:45.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:45.444 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:45.444 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:45.444 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:45.444 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:45.444 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:45.444 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:45.454 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:55:45.454 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:45.464 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:55:45.464 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:55:45.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:45.514 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:45.814 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:45.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:45.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:45.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:55:45.854 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:45.854 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:45.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:55:45.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:55:45.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:45.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:45.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:55:45.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:45.954 -07 000000581 INF: Autofocus start
17-03-18 05:55:45.954 -07 000000581 INF: MeasureProfile start
17-03-18 05:55:45.954 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:45.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:45.964 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:45.964 -07 000000581 INF: MeasureProfile done
17-03-18 05:55:45.964 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:55:45.964 -07 000000581 INF: Autofocus finished
17-03-18 05:55:46.164 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:46.164 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:55:46.164 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177248295799279. ----------
17-03-18 05:55:46.164 -07 000000610 INF: Cycle	143	Tile	4	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:46.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37255, sync = True, waitForSettling = True)
17-03-18 05:55:46.174 -07 000000610 INF: Z Motor: Moving to -0.170542 mm, started at -0.177248 mm, distance = 6.71 um
17-03-18 05:55:46.174 -07 000000610 INF: FPGA: Xmit ZDACW 37255\n [Z Motor]
17-03-18 05:55:46.174 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:55:46.184 -07 000000610 INF: FPGA: 'ZDACW 37255' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:46.184 -07 000000487 INF: FPGA: Recv ZDACR 37255
17-03-18 05:55:46.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:46.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.344 -07 000000012 INF: FPGA: Recv ZSGSRD 35839
17-03-18 05:55:46.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:46.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.354 -07 000000487 INF: FPGA: Recv ZSGSRD 35844
17-03-18 05:55:46.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35838
17-03-18 05:55:46.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.374 -07 000000625 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:55:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35845
17-03-18 05:55:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35839
17-03-18 05:55:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35837
17-03-18 05:55:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.414 -07 000000512 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:55:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.424 -07 000000611 INF: FPGA: Recv ZSGSRD 35845
17-03-18 05:55:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:46.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35840
17-03-18 05:55:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:46.444 -07 000000611 INF: FPGA: Recv ZPIEZORD 31689
17-03-18 05:55:46.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:46.454 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -9.2 V.
17-03-18 05:55:46.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35839 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35839 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35845 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:55:46.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35839, posNoise = 6, negNoise = 8
17-03-18 05:55:46.454 -07 000000610 INF: Z Motor: After move to -0.170542, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:46.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:55:46.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:46.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:46.454 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:46.454 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:46.454 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:46.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:46.454 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:46.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:46.454 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:46.454 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:46.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:55:46.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:46.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:55:46.464 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:55:46.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:46.464 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:46.464 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:55:46.464 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:55:46.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:55:46.464 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:55:46.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37432 150\n [Camera]
17-03-18 05:55:46.674 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:46.814 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:47.124 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:47.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:47.124 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:47.124 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:47.124 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:55:47.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:47.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:47.124 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:47.124 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:47.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:55:47.314 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37432 833
17-03-18 05:55:47.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:47.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:55:47.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:55:47.504 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:47.504 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:55:47.504 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:55:47.504 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:47.514 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:47.514 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:47.514 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:55:47.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:55:47.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:47.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:47.684 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:47.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:47.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:55:47.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:47.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:47.684 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:47.684 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:47.684 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:55:47.874 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:55:47.874 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:47.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37432 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:55:48.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:48.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170560690959706. ------
17-03-18 05:55:48.004 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:48.004 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17697 mm
17-03-18 05:55:48.004 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:48.004 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:55:48.004 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 05:55:48.004 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:48.014 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:48.014 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38659, sync = True, waitForSettling = False)
17-03-18 05:55:48.014 -07 000000581 INF: Z Motor: Moving to -0.176970 mm, started at -0.170561 mm, distance = -6.41 um
17-03-18 05:55:48.014 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:55:48.014 -07 000000611 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:55:48.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:48.024 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:48.024 -07 000000581 INF: FPGA: Xmit ZDACW 38659\n [Z Motor]
17-03-18 05:55:48.024 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:48.024 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:55:48.024 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:55:48.034 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:48.034 -07 000000581 INF: FPGA: 'ZDACW 38659' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:55:48.044 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:48.054 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:48.054 -07 000000447 INF: FPGA: Recv ZDACR 38659
17-03-18 05:55:48.064 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:55:48.064 -07 000000581 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:55:48.084 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:55:48.084 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:55:48.084 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:48.084 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:55:48.084 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:55:48.084 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:48.094 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:48.094 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:55:48.094 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:55:48.094 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:55:48.184 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.981281,
17-03-18 05:55:48.234 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:48.234 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:55:48.414 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:55:48.414 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:55:48.464 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:48.474 -07 000000480 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:55:48.474 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:55:48.474 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:48.474 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:55:48.474 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:55:49.424 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:49.424 -07 000000447 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:55:49.434 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:49.434 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:49.464 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:49.464 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:55:49.464 -07 000000462 INF: Y Motor: Moved to 63.2227 after 1452 ms (table move)
17-03-18 05:55:49.464 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176970 mm (DAC = 38659)
17-03-18 05:55:49.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.464 -07 000000447 INF: FPGA: Recv ZSGSRD 36842
17-03-18 05:55:49.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:49.474 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.474 -07 000000512 INF: FPGA: Recv ZSGSRD 36840
17-03-18 05:55:49.484 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.484 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.484 -07 000000447 INF: FPGA: Recv ZSGSRD 36843
17-03-18 05:55:49.494 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.494 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.494 -07 000000012 INF: FPGA: Recv ZSGSRD 36832
17-03-18 05:55:49.504 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.504 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.504 -07 000000447 INF: FPGA: Recv ZSGSRD 36833
17-03-18 05:55:49.514 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.514 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.514 -07 000000012 INF: FPGA: Recv ZSGSRD 36835
17-03-18 05:55:49.524 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.524 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.524 -07 000000437 INF: FPGA: Recv ZSGSRD 36840
17-03-18 05:55:49.534 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.534 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.534 -07 000000581 INF: FPGA: Recv ZSGSRD 36835
17-03-18 05:55:49.544 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.544 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.544 -07 000000611 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:55:49.554 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.554 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:49.554 -07 000000437 INF: FPGA: Recv ZSGSRD 36840
17-03-18 05:55:49.564 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.564 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:49.564 -07 000000611 INF: FPGA: Recv ZPIEZORD 33041
17-03-18 05:55:49.574 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.4 V.
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36839 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36832 (-176.0 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 5, negNoise = 6
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: After move to -0.176970, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-18 05:55:49.574 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:49.624 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:55:49.624 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:49.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:49.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:49.624 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:49.624 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:49.624 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:49.624 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:49.624 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:49.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:49.634 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:49.634 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:49.634 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:55:49.634 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:55:49.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:49.684 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:49.984 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:49.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:49.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:49.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:55:50.024 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:50.024 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:50.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:55:50.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:55:50.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:50.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:50.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:55:50.124 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:50.124 -07 000000611 INF: Autofocus start
17-03-18 05:55:50.124 -07 000000611 INF: MeasureProfile start
17-03-18 05:55:50.124 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:50.134 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:50.134 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:50.134 -07 000000611 INF: MeasureProfile done
17-03-18 05:55:50.134 -07 000000611 INF: X=64  Z correction [um]=0.2557664
17-03-18 05:55:50.134 -07 000000611 INF: Autofocus finished
17-03-18 05:55:50.334 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:50.334 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:55:50.344 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176978478889325. ----------
17-03-18 05:55:50.344 -07 000000610 INF: Cycle	143	Tile	5	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:50.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37228, sync = True, waitForSettling = True)
17-03-18 05:55:50.354 -07 000000610 INF: Z Motor: Moving to -0.170419 mm, started at -0.176978 mm, distance = 6.56 um
17-03-18 05:55:50.354 -07 000000610 INF: FPGA: Xmit ZDACW 37228\n [Z Motor]
17-03-18 05:55:50.354 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:55:50.364 -07 000000610 INF: FPGA: 'ZDACW 37228' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:55:50.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:50.364 -07 000000447 INF: FPGA: Recv ZDACR 37228
17-03-18 05:55:50.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:50.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.524 -07 000000479 INF: FPGA: Recv ZSGSRD 35818
17-03-18 05:55:50.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:50.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.544 -07 000000447 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:55:50.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:55:50.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.554 -07 000000479 INF: FPGA: Recv ZSGSRD 35817
17-03-18 05:55:50.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:55:50.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35814
17-03-18 05:55:50.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.584 -07 000000480 INF: FPGA: Recv ZSGSRD 35823
17-03-18 05:55:50.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.594 -07 000000512 INF: FPGA: Recv ZSGSRD 35817
17-03-18 05:55:50.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.604 -07 000000480 INF: FPGA: Recv ZSGSRD 35820
17-03-18 05:55:50.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35820
17-03-18 05:55:50.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:50.624 -07 000000480 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:55:50.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:50.634 -07 000000512 INF: FPGA: Recv ZPIEZORD 31699
17-03-18 05:55:50.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:50.644 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.1 V.
17-03-18 05:55:50.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35818 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35818 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35814 (-169.5 uncal um), Max = 35823 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:55:50.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35818, posNoise = 5, negNoise = 4
17-03-18 05:55:50.644 -07 000000610 INF: Z Motor: After move to -0.170419, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:50.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:55:50.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:50.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:50.644 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:50.644 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:50.644 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:50.644 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:50.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:50.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:50.644 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:55:50.644 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:50.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:50.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:50.654 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:55:50.654 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:50.654 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:50.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:50.664 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:55:50.664 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:55:50.664 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:55:50.664 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:55:50.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37404 150\n [Camera]
17-03-18 05:55:50.864 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:51.314 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:51.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:51.314 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:51.314 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:51.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:51.314 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:51.314 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:51.314 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:55:51.324 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:51.324 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:55:51.504 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37404 833
17-03-18 05:55:51.654 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:51.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:55:51.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:55:51.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:51.714 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:51.714 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:55:51.714 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:55:51.714 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:55:51.714 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:51.724 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:51.724 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:55:51.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:51.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:51.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:51.864 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:51.864 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:51.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:55:51.874 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:51.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:51.874 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:51.874 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:51.874 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:55:52.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:55:52.064 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:52.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37404 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:55:52.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:52.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170425782504729. ------
17-03-18 05:55:52.064 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:52.064 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17673 mm
17-03-18 05:55:52.064 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:52.184 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:52.184 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 05:55:52.184 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:55:52.184 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:55:52.184 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:52.184 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38608, sync = True, waitForSettling = False)
17-03-18 05:55:52.184 -07 000000512 INF: Z Motor: Moving to -0.176736 mm, started at -0.170426 mm, distance = -6.31 um
17-03-18 05:55:52.194 -07 000000444 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:55:52.194 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:55:52.194 -07 000000480 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:52.194 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:52.194 -07 000000480 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:55:52.194 -07 000000512 INF: FPGA: Xmit ZDACW 38608\n [Z Motor]
17-03-18 05:55:52.194 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:55:52.204 -07 000000512 INF: FPGA: 'ZDACW 38608' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:55:52.204 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:52.214 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:52.224 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:52.224 -07 000000444 INF: FPGA: Recv ZDACR 38608
17-03-18 05:55:52.234 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:55:52.234 -07 000000512 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:55:52.264 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:55:52.264 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:55:52.264 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:52.264 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:55:52.264 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:55:52.274 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:52.274 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:52.274 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:55:52.274 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:55:52.284 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:55:52.404 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:52.404 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 215 ms overall
17-03-18 05:55:52.584 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 05:55:52.584 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:55:52.634 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:52.644 -07 000000455 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:55:52.644 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:55:52.644 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:52.644 -07 000000480 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:55:52.644 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:55:53.544 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.031682,
17-03-18 05:55:53.594 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:53.594 -07 000000455 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:55:53.604 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:53.604 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:53.634 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:53.634 -07 000000480 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:55:53.634 -07 000000480 INF: Y Motor: Moved to 64.0557 after 1444 ms (table move)
17-03-18 05:55:53.634 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176736 mm (DAC = 38608)
17-03-18 05:55:53.634 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.644 -07 000000447 INF: FPGA: Recv ZSGSRD 36802
17-03-18 05:55:53.644 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:55:53.644 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.644 -07 000000462 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:55:53.654 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.654 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.654 -07 000000447 INF: FPGA: Recv ZSGSRD 36809
17-03-18 05:55:53.664 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.664 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.664 -07 000000447 INF: FPGA: Recv ZSGSRD 36789
17-03-18 05:55:53.674 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.674 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.674 -07 000000462 INF: FPGA: Recv ZSGSRD 36797
17-03-18 05:55:53.684 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.684 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.684 -07 000000487 INF: FPGA: Recv ZSGSRD 36804
17-03-18 05:55:53.694 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.694 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.694 -07 000000512 INF: FPGA: Recv ZSGSRD 36802
17-03-18 05:55:53.704 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.704 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.704 -07 000000447 INF: FPGA: Recv ZSGSRD 36807
17-03-18 05:55:53.714 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.714 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.714 -07 000000480 INF: FPGA: Recv ZSGSRD 36798
17-03-18 05:55:53.724 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.724 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:53.724 -07 000000447 INF: FPGA: Recv ZSGSRD 36808
17-03-18 05:55:53.734 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.734 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:53.734 -07 000000480 INF: FPGA: Recv ZPIEZORD 32993
17-03-18 05:55:53.744 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.4 V.
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36802 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36803 (-175.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36789 (-175.8 uncal um), Max = 36809 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36802, posNoise = 7, negNoise = 13
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: After move to -0.176736, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-18 05:55:53.744 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:53.794 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 05:55:53.794 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:53.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:53.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:53.794 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:53.794 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:53.794 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:53.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:53.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:55:53.794 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:53.804 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:53.804 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:53.804 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:55:53.804 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:55:53.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:53.854 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:54.154 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:54.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:54.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:54.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:55:54.194 -07 000000581 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:55:54.194 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:54.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 05:55:54.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:55:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:54.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:55:54.294 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:54.294 -07 000000012 INF: Autofocus start
17-03-18 05:55:54.294 -07 000000012 INF: MeasureProfile start
17-03-18 05:55:54.294 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:54.304 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:54.304 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:54.314 -07 000000012 INF: MeasureProfile done
17-03-18 05:55:54.314 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:55:54.314 -07 000000012 INF: Autofocus finished
17-03-18 05:55:54.504 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:54.504 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:55:54.504 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176747207252222. ----------
17-03-18 05:55:54.504 -07 000000610 INF: Cycle	143	Tile	6	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:54.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37105, sync = True, waitForSettling = True)
17-03-18 05:55:54.514 -07 000000610 INF: Z Motor: Moving to -0.169856 mm, started at -0.176747 mm, distance = 6.89 um
17-03-18 05:55:54.514 -07 000000610 INF: FPGA: Xmit ZDACW 37105\n [Z Motor]
17-03-18 05:55:54.514 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:55:54.524 -07 000000610 INF: FPGA: 'ZDACW 37105' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:55:54.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:54.524 -07 000000487 INF: FPGA: Recv ZDACR 37105
17-03-18 05:55:54.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.684 -07 000000444 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:55:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35734
17-03-18 05:55:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.704 -07 000000444 INF: FPGA: Recv ZSGSRD 35730
17-03-18 05:55:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.714 -07 000000444 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:55:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35723
17-03-18 05:55:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:55:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.744 -07 000000447 INF: FPGA: Recv ZSGSRD 35730
17-03-18 05:55:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.754 -07 000000447 INF: FPGA: Recv ZSGSRD 35734
17-03-18 05:55:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.764 -07 000000447 INF: FPGA: Recv ZSGSRD 35729
17-03-18 05:55:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:54.774 -07 000000447 INF: FPGA: Recv ZSGSRD 35728
17-03-18 05:55:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:54.784 -07 000000462 INF: FPGA: Recv ZPIEZORD 31545
17-03-18 05:55:54.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:54.794 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.2 V.
17-03-18 05:55:54.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35730 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35730 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35723 (-168.9 uncal um), Max = 35734 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:55:54.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35730, posNoise = 4, negNoise = 7
17-03-18 05:55:54.794 -07 000000610 INF: Z Motor: After move to -0.169856, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:54.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:55:54.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:54.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:54.794 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:54.794 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:54.794 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:54.794 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:54.794 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:54.794 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:54.804 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:55:54.804 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:54.804 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:55:54.804 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:54.804 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:55:54.804 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:54.804 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:54.804 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:54.814 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:55:54.814 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:55:54.814 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:55:54.814 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:55:54.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37281 150\n [Camera]
17-03-18 05:55:55.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:55.464 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:55.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:55.474 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:55.474 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:55.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:55.474 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:55.474 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:55.474 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:55:55.484 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:55.484 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:55:55.664 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37281 833
17-03-18 05:55:55.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:55.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:55:55.854 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:55:55.854 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:55.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:55:55.854 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:55:55.854 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:55.854 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:55.864 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:55.864 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:55:55.864 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:55:56.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:55:56.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:55:56.024 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:56.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:55:56.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:55:56.034 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:56.034 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:56.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:55:56.034 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:56.034 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:55:56.214 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:55:56.214 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:55:56.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37281 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-18 05:55:56.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:55:56.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169860451836254. ------
17-03-18 05:55:56.224 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17632 mm
17-03-18 05:55:56.224 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:55:56.224 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:55:56.224 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:55:56.224 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38518, sync = True, waitForSettling = False)
17-03-18 05:55:56.224 -07 000000480 INF: Z Motor: Moving to -0.176324 mm, started at -0.169860 mm, distance = -6.46 um
17-03-18 05:55:56.234 -07 000000480 INF: FPGA: Xmit ZDACW 38518\n [Z Motor]
17-03-18 05:55:56.234 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:55:56.244 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:56.244 -07 000000480 INF: FPGA: 'ZDACW 38518' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:55:56.244 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:56.254 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:56.254 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:55:56.254 -07 000000012 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:55:56.264 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:55:56.264 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:56.264 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:55:56.264 -07 000000462 INF: Y Motor: Moving 1338 steps-14
17-03-18 05:55:56.274 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:56.274 -07 000000447 INF: FPGA: Recv ZDACR 38518
17-03-18 05:55:56.284 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:55:56.284 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:55:56.284 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:55:56.294 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:55:56.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:55:56.424 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:55:56.434 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:56.434 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:55:56.434 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:55:56.434 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:56.434 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:55:56.434 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:55:56.434 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:55:56.444 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:55:56.484 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:55:56.484 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:55:56.664 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:55:56.664 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-18 05:55:56.714 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:56.724 -07 000000012 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:55:56.734 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:56.734 -07 000000462 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:56.734 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:55:56.734 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.837 mm, average velocity = 2.072 mm/sec
17-03-18 05:55:56.814 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:55:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:55:57.684 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:55:57.684 -07 000000012 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:55:57.694 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:57.694 -07 000000462 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:55:57.724 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:55:57.724 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:55:57.724 -07 000000462 INF: Y Motor: Moved to 64.8779 after 1493 ms (table move)
17-03-18 05:55:57.724 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176324 mm (DAC = 38518)
17-03-18 05:55:57.724 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.724 -07 000000480 INF: FPGA: Recv ZSGSRD 36741
17-03-18 05:55:57.734 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:55:57.734 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.734 -07 000000462 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:55:57.744 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.744 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.744 -07 000000447 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:55:57.754 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.754 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.754 -07 000000012 INF: FPGA: Recv ZSGSRD 36741
17-03-18 05:55:57.764 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.764 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.764 -07 000000447 INF: FPGA: Recv ZSGSRD 36729
17-03-18 05:55:57.774 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.774 -07 000000611 INF: FPGA: Recv ZSGSRD 36733
17-03-18 05:55:57.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.784 -07 000000487 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:55:57.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.794 -07 000000012 INF: FPGA: Recv ZSGSRD 36736
17-03-18 05:55:57.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.804 -07 000000611 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:55:57.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:57.814 -07 000000487 INF: FPGA: Recv ZSGSRD 36742
17-03-18 05:55:57.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.824 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:57.824 -07 000000462 INF: FPGA: Recv ZPIEZORD 32906
17-03-18 05:55:57.834 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.5 V.
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36737 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36729 (-175.4 uncal um), Max = 36742 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36737, posNoise = 5, negNoise = 8
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: After move to -0.176324, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: Settle wait time = 1496 ms, measure time = 105 ms (allowed 150 ms), total time = 1601 ms
17-03-18 05:55:57.834 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:55:57.884 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1653 ms
17-03-18 05:55:57.884 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:55:57.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:57.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:57.884 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:57.884 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:57.884 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:55:57.884 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:57.884 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:55:57.884 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:55:57.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:57.894 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:55:57.904 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:55:57.904 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:55:57.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:55:57.954 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:55:58.254 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:55:58.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:55:58.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:55:58.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:55:58.294 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:55:58.294 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:55:58.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:55:58.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:55:58.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:58.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:55:58.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:55:58.394 -07 000000512 INF: Autofocus start
17-03-18 05:55:58.394 -07 000000512 INF: MeasureProfile start
17-03-18 05:55:58.394 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:55:58.404 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:55:58.404 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:55:58.404 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:55:58.404 -07 000000512 INF: MeasureProfile done
17-03-18 05:55:58.404 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:55:58.414 -07 000000512 INF: Autofocus finished
17-03-18 05:55:58.604 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:55:58.604 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:55:58.604 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.176329633463007. ----------
17-03-18 05:55:58.604 -07 000000610 INF: Cycle	143	Tile	7	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:55:58.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37015, sync = True, waitForSettling = True)
17-03-18 05:55:58.614 -07 000000610 INF: Z Motor: Moving to -0.169444 mm, started at -0.176330 mm, distance = 6.89 um
17-03-18 05:55:58.614 -07 000000610 INF: FPGA: Xmit ZDACW 37015\n [Z Motor]
17-03-18 05:55:58.614 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:55:58.624 -07 000000610 INF: FPGA: 'ZDACW 37015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:55:58.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:55:58.624 -07 000000480 INF: FPGA: Recv ZDACR 37015
17-03-18 05:55:58.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:55:58.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.784 -07 000000455 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:55:58.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:55:58.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.794 -07 000000480 INF: FPGA: Recv ZSGSRD 35672
17-03-18 05:55:58.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.804 -07 000000480 INF: FPGA: Recv ZSGSRD 35662
17-03-18 05:55:58.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35661
17-03-18 05:55:58.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35673
17-03-18 05:55:58.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.834 -07 000000455 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:55:58.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.844 -07 000000447 INF: FPGA: Recv ZSGSRD 35664
17-03-18 05:55:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.854 -07 000000447 INF: FPGA: Recv ZSGSRD 35665
17-03-18 05:55:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.864 -07 000000447 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:55:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:55:58.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:55:58.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:55:58.884 -07 000000447 INF: FPGA: Recv ZPIEZORD 31476
17-03-18 05:55:58.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:55:58.894 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.2 V.
17-03-18 05:55:58.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35671 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35673 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:55:58.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 5, negNoise = 7
17-03-18 05:55:58.894 -07 000000610 INF: Z Motor: After move to -0.169444, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:55:58.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:55:58.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:55:58.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:55:58.894 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:55:58.894 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:55:58.894 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:55:58.894 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:55:58.894 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:55:58.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:55:58.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:55:58.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:55:58.894 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:55:58.894 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:55:58.904 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.011254,
17-03-18 05:55:58.904 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:55:58.904 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:55:58.904 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:55:58.904 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:55:58.914 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:55:58.914 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:55:58.914 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:55:58.914 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:55:58.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37191 150\n [Camera]
17-03-18 05:55:59.124 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:55:59.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:55:59.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:55:59.574 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:55:59.574 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:55:59.574 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:55:59.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:55:59.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:55:59.584 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:55:59.584 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:55:59.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:55:59.774 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37191 833
17-03-18 05:55:59.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:55:59.954 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:55:59.954 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:55:59.954 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:59.954 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:55:59.954 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:55:59.954 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:55:59.964 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:59.964 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:55:59.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:55:59.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:56:00.134 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:00.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:00.134 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:00.134 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:00.134 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:56:00.144 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:00.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:00.144 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:00.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:00.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:56:00.324 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:00.334 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:00.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37191 150' command took 2 ms to send, 1396 ms to get response, and 1422 ms overall
17-03-18 05:56:00.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:00.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169462150683465. ------
17-03-18 05:56:00.344 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:00.344 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17623 mm
17-03-18 05:56:00.344 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:00.344 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:00.344 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:56:00.344 -07 000000447 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:56:00.344 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38496, sync = True, waitForSettling = False)
17-03-18 05:56:00.344 -07 000000012 INF: Z Motor: Moving to -0.176223 mm, started at -0.169462 mm, distance = -6.76 um
17-03-18 05:56:00.354 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:00.474 -07 000000012 INF: FPGA: Xmit ZDACW 38496\n [Z Motor]
17-03-18 05:56:00.474 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:56:00.484 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:00.484 -07 000000012 INF: FPGA: 'ZDACW 38496' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 05:56:00.484 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:56:00.494 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:00.494 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-18 05:56:00.494 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:00.494 -07 000000447 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:00.494 -07 000000447 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:56:00.504 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:00.504 -07 000000512 INF: FPGA: Recv ZDACR 38496
17-03-18 05:56:00.514 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:00.514 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:00.514 -07 000000012 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 05:56:00.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:56:00.534 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:56:00.534 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:00.534 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:56:00.534 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:56:00.534 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:00.534 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:00.544 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:56:00.544 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:00.544 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:56:00.694 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:00.694 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:56:00.884 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:56:00.884 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:56:00.934 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:00.944 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:56:00.944 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:00.944 -07 000000447 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:00.944 -07 000000447 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:56:00.944 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:56:01.814 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:01.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:01.894 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:01.894 -07 000000462 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:56:01.904 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:01.904 -07 000000447 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:01.944 -07 000000447 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:01.944 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:01.944 -07 000000447 INF: Y Motor: Moved to 65.7129 after 1593 ms (table move)
17-03-18 05:56:01.944 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176223 mm (DAC = 38496)
17-03-18 05:56:01.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.944 -07 000000606 INF: FPGA: Recv ZSGSRD 36717
17-03-18 05:56:01.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:01.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.954 -07 000000012 INF: FPGA: Recv ZSGSRD 36716
17-03-18 05:56:01.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:01.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.964 -07 000000606 INF: FPGA: Recv ZSGSRD 36716
17-03-18 05:56:01.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:01.974 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.974 -07 000000581 INF: FPGA: Recv ZSGSRD 36724
17-03-18 05:56:01.984 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:01.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.984 -07 000000455 INF: FPGA: Recv ZSGSRD 36722
17-03-18 05:56:01.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:01.994 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:01.994 -07 000000581 INF: FPGA: Recv ZSGSRD 36723
17-03-18 05:56:02.004 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.004 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:02.004 -07 000000581 INF: FPGA: Recv ZSGSRD 36721
17-03-18 05:56:02.014 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.014 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:02.014 -07 000000581 INF: FPGA: Recv ZSGSRD 36726
17-03-18 05:56:02.024 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.024 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:02.024 -07 000000581 INF: FPGA: Recv ZSGSRD 36719
17-03-18 05:56:02.034 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.034 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:02.034 -07 000000581 INF: FPGA: Recv ZSGSRD 36721
17-03-18 05:56:02.044 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.044 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:02.044 -07 000000581 INF: FPGA: Recv ZPIEZORD 32894
17-03-18 05:56:02.054 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.5 V.
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36720 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36721 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36716 (-175.3 uncal um), Max = 36726 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36720, posNoise = 6, negNoise = 4
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: After move to -0.176223, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: Settle wait time = 1596 ms, measure time = 106 ms (allowed 150 ms), total time = 1702 ms
17-03-18 05:56:02.054 -07 000000487 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:02.104 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1757 ms
17-03-18 05:56:02.104 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:02.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:02.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:02.104 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:02.104 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:02.104 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:02.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:02.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:02.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:02.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:02.114 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:02.114 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:02.114 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:56:02.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:02.164 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:02.464 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:02.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:02.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:02.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:02.504 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:02.504 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:02.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:56:02.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:56:02.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:02.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:02.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:56:02.604 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:02.604 -07 000000012 INF: Autofocus start
17-03-18 05:56:02.604 -07 000000012 INF: MeasureProfile start
17-03-18 05:56:02.604 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:02.614 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:02.614 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:02.614 -07 000000012 INF: MeasureProfile done
17-03-18 05:56:02.614 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:56:02.614 -07 000000012 INF: Autofocus finished
17-03-18 05:56:02.814 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:02.814 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:02.814 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176220421856597. ----------
17-03-18 05:56:02.814 -07 000000610 INF: Cycle	143	Tile	8	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:02.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = True)
17-03-18 05:56:02.824 -07 000000610 INF: Z Motor: Moving to -0.169343 mm, started at -0.176220 mm, distance = 6.88 um
17-03-18 05:56:02.824 -07 000000610 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-18 05:56:02.824 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:56:02.834 -07 000000610 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:02.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:02.834 -07 000000625 INF: FPGA: Recv ZDACR 36993
17-03-18 05:56:02.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:02.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:02.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:02.994 -07 000000447 INF: FPGA: Recv ZSGSRD 35649
17-03-18 05:56:03.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:03.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.004 -07 000000462 INF: FPGA: Recv ZSGSRD 35649
17-03-18 05:56:03.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.014 -07 000000611 INF: FPGA: Recv ZSGSRD 35647
17-03-18 05:56:03.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.024 -07 000000447 INF: FPGA: Recv ZSGSRD 35646
17-03-18 05:56:03.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.034 -07 000000611 INF: FPGA: Recv ZSGSRD 35653
17-03-18 05:56:03.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.044 -07 000000462 INF: FPGA: Recv ZSGSRD 35651
17-03-18 05:56:03.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.054 -07 000000625 INF: FPGA: Recv ZSGSRD 35645
17-03-18 05:56:03.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.064 -07 000000447 INF: FPGA: Recv ZSGSRD 35651
17-03-18 05:56:03.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.074 -07 000000625 INF: FPGA: Recv ZSGSRD 35650
17-03-18 05:56:03.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:03.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35647
17-03-18 05:56:03.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:03.094 -07 000000611 INF: FPGA: Recv ZPIEZORD 31477
17-03-18 05:56:03.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:03.104 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.2 V.
17-03-18 05:56:03.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35649 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35649 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35645 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:56:03.104 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35649, posNoise = 4, negNoise = 4
17-03-18 05:56:03.104 -07 000000610 INF: Z Motor: After move to -0.169343, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:03.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:56:03.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:03.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:03.104 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:03.104 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:03.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:03.104 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:03.104 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:03.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:03.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:56:03.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:03.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:56:03.104 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:03.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:03.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:03.114 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:03.114 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:03.124 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:03.124 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:56:03.124 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:56:03.124 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:56:03.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37170 150\n [Camera]
17-03-18 05:56:03.324 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:03.774 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:03.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:03.774 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:03.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:03.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:03.774 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:03.774 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:03.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:03.784 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:03.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:56:03.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37170 833
17-03-18 05:56:04.114 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:04.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:56:04.174 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:56:04.174 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:04.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:56:04.174 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:56:04.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:04.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:04.174 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:56:04.184 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:04.184 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:56:04.274 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.014009,
17-03-18 05:56:04.324 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:04.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:04.334 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:04.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:04.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:04.334 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:04.334 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:04.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:56:04.344 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:04.344 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:56:04.524 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:04.524 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:04.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37170 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-18 05:56:04.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:04.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169340090652771. ------
17-03-18 05:56:04.524 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:04.524 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17568 mm
17-03-18 05:56:04.524 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:04.534 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:04.534 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:04.654 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:56:04.654 -07 000000611 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:56:04.654 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:04.654 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38378, sync = True, waitForSettling = False)
17-03-18 05:56:04.654 -07 000000447 INF: Z Motor: Moving to -0.175683 mm, started at -0.169340 mm, distance = -6.34 um
17-03-18 05:56:04.664 -07 000000447 INF: FPGA: Xmit ZDACW 38378\n [Z Motor]
17-03-18 05:56:04.664 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:56:04.674 -07 000000447 INF: FPGA: 'ZDACW 38378' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:56:04.674 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:04.674 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:56:04.684 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:04.684 -07 000000611 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:04.684 -07 000000611 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:04.684 -07 000000611 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:56:04.684 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:04.684 -07 000000606 INF: FPGA: Recv ZDACR 38378
17-03-18 05:56:04.694 -07 000000447 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:04.694 -07 000000447 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:56:04.694 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:04.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:56:04.734 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:56:04.734 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:04.734 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:56:04.734 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:56:04.734 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:04.734 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:04.734 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:56:04.734 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:56:04.744 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:56:04.854 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:04.854 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:56:05.064 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:56:05.064 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:56:05.114 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:05.124 -07 000000012 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:56:05.124 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:05.124 -07 000000611 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:05.124 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:56:05.124 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 05:56:06.074 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:06.074 -07 000000455 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:56:06.084 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.084 -07 000000611 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:06.114 -07 000000611 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:06.114 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:06.114 -07 000000611 INF: Y Motor: Moved to 66.5376 after 1463 ms (table move)
17-03-18 05:56:06.114 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175683 mm (DAC = 38378)
17-03-18 05:56:06.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.124 -07 000000625 INF: FPGA: Recv ZSGSRD 36638
17-03-18 05:56:06.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:56:06.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.124 -07 000000611 INF: FPGA: Recv ZSGSRD 36638
17-03-18 05:56:06.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.134 -07 000000512 INF: FPGA: Recv ZSGSRD 36639
17-03-18 05:56:06.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.144 -07 000000447 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:56:06.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36631
17-03-18 05:56:06.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.164 -07 000000487 INF: FPGA: Recv ZSGSRD 36638
17-03-18 05:56:06.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.174 -07 000000606 INF: FPGA: Recv ZSGSRD 36636
17-03-18 05:56:06.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.184 -07 000000512 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:56:06.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.194 -07 000000625 INF: FPGA: Recv ZSGSRD 36639
17-03-18 05:56:06.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:06.204 -07 000000611 INF: FPGA: Recv ZSGSRD 36639
17-03-18 05:56:06.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.214 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:06.214 -07 000000625 INF: FPGA: Recv ZPIEZORD 32829
17-03-18 05:56:06.224 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.4 V.
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36638 (-174.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36639 (-174.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 2, negNoise = 6
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: After move to -0.175683, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: Settle wait time = 1466 ms, measure time = 102 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:56:06.224 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:06.274 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 05:56:06.274 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:06.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:06.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:06.274 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:06.274 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:06.274 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:06.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:06.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:06.274 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:06.284 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:06.284 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:06.294 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:56:06.294 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:56:06.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:06.344 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:56:06.644 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:56:06.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:56:06.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:06.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:06.684 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:06.684 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:06.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 05:56:06.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:56:06.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:06.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:06.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:56:06.784 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:06.784 -07 000000462 INF: Autofocus start
17-03-18 05:56:06.784 -07 000000462 INF: MeasureProfile start
17-03-18 05:56:06.784 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:06.794 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:06.794 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:06.804 -07 000000462 INF: MeasureProfile done
17-03-18 05:56:06.804 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:56:06.804 -07 000000462 INF: Autofocus finished
17-03-18 05:56:06.814 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:06.994 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:06.994 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:56:06.994 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175687212248831. ----------
17-03-18 05:56:07.004 -07 000000610 INF: Cycle	143	Tile	9	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:07.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36910, sync = True, waitForSettling = True)
17-03-18 05:56:07.004 -07 000000610 INF: Z Motor: Moving to -0.168963 mm, started at -0.175687 mm, distance = 6.72 um
17-03-18 05:56:07.024 -07 000000610 INF: FPGA: Xmit ZDACW 36910\n [Z Motor]
17-03-18 05:56:07.024 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:56:07.034 -07 000000610 INF: FPGA: 'ZDACW 36910' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:56:07.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:07.034 -07 000000455 INF: FPGA: Recv ZDACR 36910
17-03-18 05:56:07.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:07.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.194 -07 000000447 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:56:07.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:07.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.204 -07 000000447 INF: FPGA: Recv ZSGSRD 35592
17-03-18 05:56:07.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.214 -07 000000625 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:56:07.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.224 -07 000000606 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:56:07.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:56:07.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35591
17-03-18 05:56:07.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35584
17-03-18 05:56:07.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.264 -07 000000625 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:56:07.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.274 -07 000000447 INF: FPGA: Recv ZSGSRD 35592
17-03-18 05:56:07.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:07.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:56:07.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:07.294 -07 000000447 INF: FPGA: Recv ZPIEZORD 31409
17-03-18 05:56:07.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:07.304 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.2 V.
17-03-18 05:56:07.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35584 (-168.1 uncal um), Max = 35594 (-168.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:56:07.304 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 2, negNoise = 8
17-03-18 05:56:07.304 -07 000000610 INF: Z Motor: After move to -0.168963, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:07.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-18 05:56:07.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:07.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:07.304 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:07.304 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:07.304 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:07.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:07.304 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:07.304 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:07.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:07.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:07.304 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:07.304 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:07.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:07.304 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:07.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:07.314 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:07.314 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:56:07.314 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:56:07.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:07.314 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:07.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37087 150\n [Camera]
17-03-18 05:56:07.524 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:07.974 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:07.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:07.974 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:07.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:07.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:07.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:07.974 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:07.974 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:07.984 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:07.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:56:08.164 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37087 833
17-03-18 05:56:08.314 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:08.354 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:56:08.354 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:56:08.354 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:08.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:56:08.354 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:56:08.354 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:08.354 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:08.354 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:56:08.354 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:08.364 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:56:08.524 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:08.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:08.524 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:08.524 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:08.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:56:08.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:08.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:08.534 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:08.534 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:08.534 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:56:08.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:56:08.724 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:08.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37087 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:56:08.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:08.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168973910560691. ------
17-03-18 05:56:08.724 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:08.724 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17566 mm
17-03-18 05:56:08.724 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:08.734 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:56:08.734 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 05:56:08.734 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38372, sync = True, waitForSettling = False)
17-03-18 05:56:08.734 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:08.734 -07 000000512 INF: Z Motor: Moving to -0.175656 mm, started at -0.168974 mm, distance = -6.68 um
17-03-18 05:56:08.734 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:08.734 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:56:08.734 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:56:08.744 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:08.744 -07 000000012 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:08.744 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:08.744 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:08.744 -07 000000012 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:56:08.754 -07 000000512 INF: FPGA: Xmit ZDACW 38372\n [Z Motor]
17-03-18 05:56:08.754 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:56:08.764 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:08.764 -07 000000512 INF: FPGA: 'ZDACW 38372' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:08.774 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:08.774 -07 000000625 INF: FPGA: Recv ZDACR 38372
17-03-18 05:56:08.784 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:08.784 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:56:08.934 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:56:08.934 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:56:08.934 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:08.934 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:56:08.934 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:56:08.934 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:08.934 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:08.944 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:08.944 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:56:08.944 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:08.944 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:56:08.944 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:56:09.134 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:56:09.134 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:56:09.184 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:09.194 -07 000000487 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:56:09.194 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:09.194 -07 000000012 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:09.194 -07 000000012 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:56:09.194 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:56:09.634 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.000345,
17-03-18 05:56:10.144 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:10.144 -07 000000611 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:56:10.154 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:10.154 -07 000000012 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:10.184 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:10.184 -07 000000012 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:10.184 -07 000000012 INF: Y Motor: Moved to 67.3706 after 1452 ms (table move)
17-03-18 05:56:10.184 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175656 mm (DAC = 38372)
17-03-18 05:56:10.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.184 -07 000000512 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:56:10.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:10.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.194 -07 000000625 INF: FPGA: Recv ZSGSRD 36634
17-03-18 05:56:10.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.204 -07 000000444 INF: FPGA: Recv ZSGSRD 36625
17-03-18 05:56:10.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:10.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.214 -07 000000480 INF: FPGA: Recv ZSGSRD 36626
17-03-18 05:56:10.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.224 -07 000000611 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:56:10.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.234 -07 000000444 INF: FPGA: Recv ZSGSRD 36632
17-03-18 05:56:10.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.244 -07 000000611 INF: FPGA: Recv ZSGSRD 36625
17-03-18 05:56:10.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.254 -07 000000480 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:56:10.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.264 -07 000000611 INF: FPGA: Recv ZSGSRD 36641
17-03-18 05:56:10.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:10.274 -07 000000480 INF: FPGA: Recv ZSGSRD 36635
17-03-18 05:56:10.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.284 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:10.284 -07 000000512 INF: FPGA: Recv ZPIEZORD 32839
17-03-18 05:56:10.294 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.4 V.
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36632 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36633 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36625 (-174.7 uncal um), Max = 36641 (-174.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36632, posNoise = 9, negNoise = 7
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: After move to -0.175656, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:56:10.294 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:10.344 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:56:10.344 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:10.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:10.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:10.344 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:10.344 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:10.344 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:10.344 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:10.344 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:10.344 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:10.354 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:10.354 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:10.354 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:10.354 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:56:10.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:10.404 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:10.704 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:10.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:10.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:10.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:56:10.744 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:10.744 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:10.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 05:56:10.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:10.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:10.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:10.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:56:10.844 -07 000000479 INF: Autofocus start
17-03-18 05:56:10.844 -07 000000479 INF: MeasureProfile start
17-03-18 05:56:10.844 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:10.844 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:10.854 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:10.854 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:10.854 -07 000000479 INF: MeasureProfile done
17-03-18 05:56:10.854 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:56:10.854 -07 000000479 INF: Autofocus finished
17-03-18 05:56:11.054 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:11.054 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:11.054 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175655091188122. ----------
17-03-18 05:56:11.054 -07 000000610 INF: Cycle	143	Tile	10	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:11.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36905, sync = True, waitForSettling = True)
17-03-18 05:56:11.064 -07 000000610 INF: Z Motor: Moving to -0.168940 mm, started at -0.175655 mm, distance = 6.71 um
17-03-18 05:56:11.064 -07 000000610 INF: FPGA: Xmit ZDACW 36905\n [Z Motor]
17-03-18 05:56:11.064 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:56:11.074 -07 000000610 INF: FPGA: 'ZDACW 36905' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:11.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:11.074 -07 000000480 INF: FPGA: Recv ZDACR 36905
17-03-18 05:56:11.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:11.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.234 -07 000000611 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:56:11.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35586
17-03-18 05:56:11.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.254 -07 000000611 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:56:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.264 -07 000000437 INF: FPGA: Recv ZSGSRD 35586
17-03-18 05:56:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.274 -07 000000444 INF: FPGA: Recv ZSGSRD 35586
17-03-18 05:56:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.284 -07 000000487 INF: FPGA: Recv ZSGSRD 35598
17-03-18 05:56:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:56:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.304 -07 000000437 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:56:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.314 -07 000000611 INF: FPGA: Recv ZSGSRD 35591
17-03-18 05:56:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:11.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:56:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:11.334 -07 000000479 INF: FPGA: Recv ZPIEZORD 31411
17-03-18 05:56:11.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:11.344 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.2 V.
17-03-18 05:56:11.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35589 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35589 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35585 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:56:11.344 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35589, posNoise = 9, negNoise = 4
17-03-18 05:56:11.344 -07 000000610 INF: Z Motor: After move to -0.168940, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:11.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:56:11.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:11.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:11.344 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:11.344 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:11.354 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:11.354 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:11.354 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:11.354 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:11.354 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:11.354 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:11.354 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:11.354 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:11.354 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:56:11.354 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:11.354 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:56:11.354 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:11.364 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:56:11.364 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:56:11.364 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:56:11.364 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:56:11.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37081 150\n [Camera]
17-03-18 05:56:11.574 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:11.814 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:12.014 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:12.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:12.024 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:12.024 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:12.024 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:56:12.024 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:12.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:12.024 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:12.024 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:12.024 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:56:12.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37081 833
17-03-18 05:56:12.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:12.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:56:12.414 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:56:12.414 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:12.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:56:12.424 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:56:12.424 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:56:12.424 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:56:12.424 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:12.424 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:12.434 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:56:12.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:12.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:12.574 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:12.574 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:12.574 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:56:12.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:12.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:12.584 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:12.584 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:12.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:56:12.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:12.774 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:12.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37081 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-18 05:56:12.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:12.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168954637924266. ------
17-03-18 05:56:12.774 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:12.774 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17527 mm
17-03-18 05:56:12.774 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:12.904 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:12.904 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:56:12.904 -07 000000611 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 05:56:12.904 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:12.904 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 05:56:12.914 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38287, sync = True, waitForSettling = False)
17-03-18 05:56:12.914 -07 000000447 INF: Z Motor: Moving to -0.175267 mm, started at -0.168955 mm, distance = -6.31 um
17-03-18 05:56:12.914 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:12.914 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:56:12.914 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:56:12.914 -07 000000611 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:12.914 -07 000000611 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:12.914 -07 000000611 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:56:12.924 -07 000000447 INF: FPGA: Xmit ZDACW 38287\n [Z Motor]
17-03-18 05:56:12.924 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:56:12.934 -07 000000447 INF: FPGA: 'ZDACW 38287' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:12.934 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:12.944 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:12.944 -07 000000625 INF: FPGA: Recv ZDACR 38287
17-03-18 05:56:12.954 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:12.954 -07 000000447 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:56:12.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:56:12.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:56:12.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:12.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:12.974 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:56:12.974 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:56:12.974 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:12.984 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:56:12.984 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:56:12.984 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:56:13.114 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:13.114 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:56:13.304 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:56:13.304 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 05:56:13.354 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:13.364 -07 000000512 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:56:13.364 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:56:13.364 -07 000000611 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:13.364 -07 000000611 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:56:13.364 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.842 mm, average velocity = 2.159 mm/sec
17-03-18 05:56:14.314 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:14.314 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:56:14.324 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:14.324 -07 000000611 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:14.354 -07 000000611 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:14.354 -07 000000611 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:14.354 -07 000000611 INF: Y Motor: Moved to 68.2036 after 1443 ms (table move)
17-03-18 05:56:14.354 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175267 mm (DAC = 38287)
17-03-18 05:56:14.354 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.354 -07 000000447 INF: FPGA: Recv ZSGSRD 36574
17-03-18 05:56:14.364 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:14.364 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.364 -07 000000012 INF: FPGA: Recv ZSGSRD 36571
17-03-18 05:56:14.374 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.374 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.374 -07 000000591 INF: FPGA: Recv ZSGSRD 36570
17-03-18 05:56:14.384 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.384 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.384 -07 000000561 INF: FPGA: Recv ZSGSRD 36570
17-03-18 05:56:14.394 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.394 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36571
17-03-18 05:56:14.404 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.404 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.404 -07 000000625 INF: FPGA: Recv ZSGSRD 36566
17-03-18 05:56:14.414 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.414 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.414 -07 000000611 INF: FPGA: Recv ZSGSRD 36571
17-03-18 05:56:14.424 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.424 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.424 -07 000000437 INF: FPGA: Recv ZSGSRD 36577
17-03-18 05:56:14.434 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.434 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.434 -07 000000581 INF: FPGA: Recv ZSGSRD 36578
17-03-18 05:56:14.444 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.444 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:14.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36570
17-03-18 05:56:14.454 -07 000000487 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.454 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:14.454 -07 000000382 INF: FPGA: Recv ZPIEZORD 32726
17-03-18 05:56:14.464 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.5 V.
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36571 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36566 (-174.3 uncal um), Max = 36578 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 6, negNoise = 6
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: After move to -0.175267, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-18 05:56:14.464 -07 000000487 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:14.514 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:56:14.514 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:14.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:14.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:14.514 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:14.514 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:14.514 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:14.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:14.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:14.514 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:14.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:14.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:14.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:14.524 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:56:14.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:14.574 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:14.874 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:14.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:14.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:14.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:14.914 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:14.914 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:14.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:56:14.994 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.978563,
17-03-18 05:56:14.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:56:14.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:14.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:14.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:56:15.014 -07 000000462 INF: Autofocus start
17-03-18 05:56:15.014 -07 000000462 INF: MeasureProfile start
17-03-18 05:56:15.024 -07 000000462 INF: MeasureProfile done
17-03-18 05:56:15.024 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:56:15.024 -07 000000462 INF: Autofocus finished
17-03-18 05:56:15.034 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:15.034 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:15.044 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:56:15.044 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:15.244 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:15.244 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:56:15.244 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.175269638459617. ----------
17-03-18 05:56:15.254 -07 000000610 INF: Cycle	143	Tile	11	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:15.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-18 05:56:15.254 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175270 mm, distance = 6.72 um
17-03-18 05:56:15.254 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-18 05:56:15.254 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:56:15.264 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:15.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:15.264 -07 000000012 INF: FPGA: Recv ZDACR 36820
17-03-18 05:56:15.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:15.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.424 -07 000000447 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:56:15.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:15.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:56:15.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.444 -07 000000444 INF: FPGA: Recv ZSGSRD 35520
17-03-18 05:56:15.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.454 -07 000000437 INF: FPGA: Recv ZSGSRD 35528
17-03-18 05:56:15.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:56:15.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.474 -07 000000447 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:56:15.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.484 -07 000000611 INF: FPGA: Recv ZSGSRD 35528
17-03-18 05:56:15.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35521
17-03-18 05:56:15.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.504 -07 000000561 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:56:15.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:15.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:56:15.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:15.524 -07 000000608 INF: FPGA: Recv ZPIEZORD 31331
17-03-18 05:56:15.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:15.534 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 05:56:15.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35532 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:56:15.534 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 4, negNoise = 8
17-03-18 05:56:15.534 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:15.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:56:15.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:15.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:15.534 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:15.534 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:15.534 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:15.534 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:15.534 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:15.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:15.534 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:56:15.534 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:15.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:15.534 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:15.544 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:56:15.544 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:15.544 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:15.544 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:15.554 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:56:15.554 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:56:15.554 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:15.554 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:56:15.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36996 150\n [Camera]
17-03-18 05:56:15.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:16.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:16.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:16.204 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:16.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:16.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:16.204 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:16.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:16.204 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:16.214 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:16.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:56:16.394 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 833
17-03-18 05:56:16.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:16.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:56:16.584 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:56:16.584 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:16.584 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:56:16.584 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:56:16.584 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:16.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:16.594 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:16.594 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:56:16.594 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:56:16.754 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:16.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:16.764 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:16.764 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:16.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:16.764 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:16.774 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:16.774 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:56:16.774 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:16.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:56:16.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:16.944 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:56:16.954 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:16.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36996 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:56:16.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:16.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168562760983618. ------
17-03-18 05:56:16.954 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:16.954 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17531 mm
17-03-18 05:56:16.954 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:16.954 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:56:16.954 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38297, sync = True, waitForSettling = False)
17-03-18 05:56:16.954 -07 000000611 INF: Z Motor: Moving to -0.175312 mm, started at -0.168563 mm, distance = -6.75 um
17-03-18 05:56:16.954 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 05:56:16.954 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:16.964 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:16.964 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:16.964 -07 000000462 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:56:16.974 -07 000000611 INF: FPGA: Xmit ZDACW 38297\n [Z Motor]
17-03-18 05:56:16.974 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:56:16.974 -07 000000561 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:16.974 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:16.974 -07 000000561 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:56:16.974 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 05:56:16.984 -07 000000611 INF: FPGA: 'ZDACW 38297' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:56:17.104 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:17.114 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:17.124 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:17.124 -07 000000462 INF: FPGA: Recv ZDACR 38297
17-03-18 05:56:17.134 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:56:17.134 -07 000000611 INF: Z Motor: MoveAbsStepped took 172 ms (did NOT wait for settling yet))
17-03-18 05:56:17.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:56:17.164 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:56:17.164 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:17.164 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:56:17.164 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:56:17.164 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:17.174 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:17.174 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:56:17.174 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:17.174 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:56:17.304 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:17.304 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 122 ms to send, 195 ms to get response, and 344 ms overall
17-03-18 05:56:17.484 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:56:17.484 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 517 ms overall
17-03-18 05:56:17.534 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:17.544 -07 000000462 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:56:17.544 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:17.544 -07 000000561 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:17.544 -07 000000561 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:56:17.544 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 518 ms, distance = 0.839 mm, average velocity = 1.620 mm/sec
17-03-18 05:56:18.494 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:18.494 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:56:18.504 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.504 -07 000000561 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:18.534 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:18.534 -07 000000561 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:18.534 -07 000000561 INF: Y Motor: Moved to 69.0259 after 1574 ms (table move)
17-03-18 05:56:18.534 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175312 mm (DAC = 38297)
17-03-18 05:56:18.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.534 -07 000000437 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:56:18.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:18.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.544 -07 000000561 INF: FPGA: Recv ZSGSRD 36572
17-03-18 05:56:18.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.554 -07 000000611 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:56:18.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.564 -07 000000561 INF: FPGA: Recv ZSGSRD 36573
17-03-18 05:56:18.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.574 -07 000000611 INF: FPGA: Recv ZSGSRD 36574
17-03-18 05:56:18.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.584 -07 000000561 INF: FPGA: Recv ZSGSRD 36578
17-03-18 05:56:18.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.594 -07 000000611 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:56:18.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.604 -07 000000625 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:56:18.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.614 -07 000000382 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:56:18.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:18.624 -07 000000479 INF: FPGA: Recv ZSGSRD 36580
17-03-18 05:56:18.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.634 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:18.634 -07 000000561 INF: FPGA: Recv ZPIEZORD 32731
17-03-18 05:56:18.644 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.5 V.
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36579 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36576 (-174.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36572 (-174.4 uncal um), Max = 36590 (-174.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36579, posNoise = 11, negNoise = 7
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: After move to -0.175312, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: Settle wait time = 1578 ms, measure time = 104 ms (allowed 150 ms), total time = 1682 ms
17-03-18 05:56:18.644 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:18.694 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 05:56:18.694 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:18.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:18.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:18.694 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:18.694 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:18.694 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:18.694 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:18.694 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:18.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:18.704 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:18.704 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:18.714 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:56:18.714 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:56:18.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:18.764 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:19.064 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:19.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:19.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:19.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:19.094 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:19.104 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:19.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:56:19.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:56:19.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:19.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:19.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:56:19.204 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:19.204 -07 000000625 INF: Autofocus start
17-03-18 05:56:19.204 -07 000000625 INF: MeasureProfile start
17-03-18 05:56:19.204 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:19.214 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:56:19.214 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:19.214 -07 000000625 INF: MeasureProfile done
17-03-18 05:56:19.214 -07 000000625 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:56:19.214 -07 000000625 INF: Autofocus finished
17-03-18 05:56:19.414 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:19.414 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:19.414 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.175314607944609. ----------
17-03-18 05:56:19.414 -07 000000610 INF: Cycle	143	Tile	12	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:19.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36777, sync = True, waitForSettling = True)
17-03-18 05:56:19.424 -07 000000610 INF: Z Motor: Moving to -0.168354 mm, started at -0.175315 mm, distance = 6.96 um
17-03-18 05:56:19.424 -07 000000610 INF: FPGA: Xmit ZDACW 36777\n [Z Motor]
17-03-18 05:56:19.424 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:56:19.434 -07 000000610 INF: FPGA: 'ZDACW 36777' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:19.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:19.434 -07 000000512 INF: FPGA: Recv ZDACR 36777
17-03-18 05:56:19.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.594 -07 000000561 INF: FPGA: Recv ZSGSRD 35499
17-03-18 05:56:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:19.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.604 -07 000000625 INF: FPGA: Recv ZSGSRD 35496
17-03-18 05:56:19.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35497
17-03-18 05:56:19.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.624 -07 000000462 INF: FPGA: Recv ZSGSRD 35498
17-03-18 05:56:19.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.634 -07 000000561 INF: FPGA: Recv ZSGSRD 35495
17-03-18 05:56:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.644 -07 000000561 INF: FPGA: Recv ZSGSRD 35502
17-03-18 05:56:19.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35496
17-03-18 05:56:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.664 -07 000000479 INF: FPGA: Recv ZSGSRD 35493
17-03-18 05:56:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35501
17-03-18 05:56:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:19.684 -07 000000561 INF: FPGA: Recv ZSGSRD 35497
17-03-18 05:56:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:19.694 -07 000000479 INF: FPGA: Recv ZPIEZORD 31305
17-03-18 05:56:19.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:19.704 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.2 V.
17-03-18 05:56:19.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35497 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35497 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35493 (-167.5 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:56:19.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35497, posNoise = 5, negNoise = 4
17-03-18 05:56:19.704 -07 000000610 INF: Z Motor: After move to -0.168354, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:19.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:56:19.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:19.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:19.704 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:19.704 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:19.704 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:19.704 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:19.704 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:19.704 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:19.704 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:19.704 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:19.704 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:19.704 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:19.714 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:19.714 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:19.714 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:19.714 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:19.724 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:19.724 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:19.724 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:19.724 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:19.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36953 150\n [Camera]
17-03-18 05:56:19.924 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:20.354 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.018051,
17-03-18 05:56:20.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:20.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:20.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:20.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:20.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:20.374 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:20.374 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:20.374 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:56:20.374 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:20.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:20.564 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36953 833
17-03-18 05:56:20.714 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:20.744 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:56:20.744 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:56:20.744 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:20.754 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:56:20.754 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:56:20.754 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:20.754 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:20.754 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:20.754 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:56:20.764 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:56:20.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:20.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:20.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:20.934 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:20.934 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 05:56:20.934 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:20.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:20.934 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:20.934 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:20.934 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:56:21.114 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:21.124 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:21.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36953 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:56:21.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:21.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168363610407224. ------
17-03-18 05:56:21.124 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:21.124 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17463 mm
17-03-18 05:56:21.124 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:21.124 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:21.134 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:21.134 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:21.134 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:56:21.134 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:56:21.134 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38149, sync = True, waitForSettling = False)
17-03-18 05:56:21.134 -07 000000581 INF: Z Motor: Moving to -0.174635 mm, started at -0.168364 mm, distance = -6.27 um
17-03-18 05:56:21.144 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:21.144 -07 000000447 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:56:21.154 -07 000000581 INF: FPGA: Xmit ZDACW 38149\n [Z Motor]
17-03-18 05:56:21.154 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:21.154 -07 000000012 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:21.154 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:21.154 -07 000000012 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:56:21.154 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:56:21.164 -07 000000581 INF: FPGA: 'ZDACW 38149' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:56:21.164 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:21.164 -07 000000462 INF: FPGA: Recv ZDACR 38149
17-03-18 05:56:21.174 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:21.174 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:21.174 -07 000000581 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:56:21.324 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:56:21.324 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:56:21.324 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:21.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:56:21.324 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:56:21.324 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:21.324 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:21.334 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:21.334 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:56:21.334 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:21.334 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:21.334 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:56:21.544 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:56:21.544 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:56:21.594 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:21.604 -07 000000462 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:56:21.604 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:56:21.604 -07 000000012 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:21.604 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:56:21.604 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.127 mm/sec
17-03-18 05:56:21.814 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:22.554 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:22.554 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:56:22.564 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:22.564 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:22.594 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:22.594 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:56:22.594 -07 000000012 INF: Y Motor: Moved to 69.8623 after 1465 ms (table move)
17-03-18 05:56:22.604 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174635 mm (DAC = 38149)
17-03-18 05:56:22.604 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.604 -07 000000480 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:56:22.614 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.614 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.614 -07 000000382 INF: FPGA: Recv ZSGSRD 36471
17-03-18 05:56:22.624 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.624 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.624 -07 000000437 INF: FPGA: Recv ZSGSRD 36470
17-03-18 05:56:22.634 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.634 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.634 -07 000000012 INF: FPGA: Recv ZSGSRD 36470
17-03-18 05:56:22.644 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.644 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.644 -07 000000437 INF: FPGA: Recv ZSGSRD 36471
17-03-18 05:56:22.654 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.654 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.654 -07 000000561 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:56:22.664 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.664 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.664 -07 000000447 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:56:22.674 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.674 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.674 -07 000000581 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:56:22.684 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.684 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.684 -07 000000437 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:56:22.694 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.694 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:22.694 -07 000000561 INF: FPGA: Recv ZSGSRD 36472
17-03-18 05:56:22.704 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.704 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:22.704 -07 000000444 INF: FPGA: Recv ZPIEZORD 32566
17-03-18 05:56:22.714 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.6 V.
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36473 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36474 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36470 (-173.7 uncal um), Max = 36479 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36473, posNoise = 6, negNoise = 3
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: After move to -0.174635, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: Settle wait time = 1468 ms, measure time = 110 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:56:22.714 -07 000000611 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:22.754 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:56:22.754 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:22.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:22.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:22.754 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:22.754 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:22.754 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:22.754 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:22.764 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:56:22.764 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:22.764 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:22.764 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:22.764 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:22.764 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:56:22.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:22.824 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:23.124 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:23.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:23.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:23.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:56:23.164 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:23.164 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:23.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 391 ms overall
17-03-18 05:56:23.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:23.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:23.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:23.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:56:23.264 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:23.264 -07 000000444 INF: Autofocus start
17-03-18 05:56:23.264 -07 000000444 INF: MeasureProfile start
17-03-18 05:56:23.264 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:23.274 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:23.274 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:23.274 -07 000000444 INF: MeasureProfile done
17-03-18 05:56:23.274 -07 000000444 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 05:56:23.274 -07 000000444 INF: Autofocus finished
17-03-18 05:56:23.474 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:23.474 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:23.474 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174633641457582. ----------
17-03-18 05:56:23.484 -07 000000610 INF: Cycle	143	Tile	13	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:23.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36555, sync = True, waitForSettling = True)
17-03-18 05:56:23.484 -07 000000610 INF: Z Motor: Moving to -0.167338 mm, started at -0.174634 mm, distance = 7.30 um
17-03-18 05:56:23.484 -07 000000610 INF: FPGA: Xmit ZDACW 36555\n [Z Motor]
17-03-18 05:56:23.484 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:56:23.494 -07 000000610 INF: FPGA: 'ZDACW 36555' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:23.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:23.494 -07 000000480 INF: FPGA: Recv ZDACR 36555
17-03-18 05:56:23.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:23.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.654 -07 000000447 INF: FPGA: Recv ZSGSRD 35337
17-03-18 05:56:23.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:23.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.664 -07 000000012 INF: FPGA: Recv ZSGSRD 35338
17-03-18 05:56:23.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35341
17-03-18 05:56:23.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.684 -07 000000447 INF: FPGA: Recv ZSGSRD 35345
17-03-18 05:56:23.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.694 -07 000000012 INF: FPGA: Recv ZSGSRD 35337
17-03-18 05:56:23.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.704 -07 000000447 INF: FPGA: Recv ZSGSRD 35340
17-03-18 05:56:23.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35343
17-03-18 05:56:23.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.724 -07 000000382 INF: FPGA: Recv ZSGSRD 35348
17-03-18 05:56:23.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.734 -07 000000480 INF: FPGA: Recv ZSGSRD 35335
17-03-18 05:56:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:23.744 -07 000000611 INF: FPGA: Recv ZSGSRD 35335
17-03-18 05:56:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:23.754 -07 000000012 INF: FPGA: Recv ZPIEZORD 31060
17-03-18 05:56:23.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:23.764 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.4 V.
17-03-18 05:56:23.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35340 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35339 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35335 (-166.5 uncal um), Max = 35348 (-166.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:56:23.764 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35340, posNoise = 8, negNoise = 5
17-03-18 05:56:23.764 -07 000000610 INF: Z Motor: After move to -0.167338, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:23.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:56:23.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:23.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:23.764 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:23.764 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:23.764 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:23.764 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:23.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:23.764 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:23.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:23.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:23.764 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:23.764 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:23.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:56:23.764 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:23.774 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:23.774 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:23.784 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:56:23.784 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:56:23.784 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:56:23.784 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:56:23.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36731 150\n [Camera]
17-03-18 05:56:23.984 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:24.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:24.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:24.434 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:24.434 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:24.434 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:56:24.434 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:24.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:24.434 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:24.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:24.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:56:24.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36731 833
17-03-18 05:56:24.774 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:24.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:56:24.814 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:56:24.814 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:24.824 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:24.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:56:24.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:56:24.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:24.824 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:56:24.824 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:24.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:56:24.994 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:24.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:24.994 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:24.994 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:24.994 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:56:24.994 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:24.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:24.994 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:24.994 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:24.994 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:56:25.184 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:25.184 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:25.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36731 150' command took 2 ms to send, 1385 ms to get response, and 1398 ms overall
17-03-18 05:56:25.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:25.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167355009100967. ------
17-03-18 05:56:25.314 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:25.314 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17373 mm
17-03-18 05:56:25.314 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:25.314 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:56:25.314 -07 000000611 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:56:25.314 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:25.324 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:25.324 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:25.324 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37951, sync = True, waitForSettling = False)
17-03-18 05:56:25.324 -07 000000382 INF: Z Motor: Moving to -0.173729 mm, started at -0.167355 mm, distance = -6.37 um
17-03-18 05:56:25.324 -07 000000561 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:56:25.334 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:25.334 -07 000000611 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:25.334 -07 000000611 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:25.334 -07 000000611 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:56:25.334 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:25.344 -07 000000382 INF: FPGA: Xmit ZDACW 37951\n [Z Motor]
17-03-18 05:56:25.344 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:56:25.354 -07 000000382 INF: FPGA: 'ZDACW 37951' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:25.354 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:25.364 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:25.364 -07 000000487 INF: FPGA: Recv ZDACR 37951
17-03-18 05:56:25.374 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:25.374 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:56:25.394 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:56:25.404 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:56:25.404 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:25.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:56:25.404 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:56:25.404 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:25.404 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:25.404 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:56:25.404 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 05:56:25.414 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:56:25.534 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:25.534 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 05:56:25.714 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.024884,
17-03-18 05:56:25.724 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:56:25.724 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:56:25.784 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:25.784 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 05:56:25.794 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:25.794 -07 000000611 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:25.794 -07 000000611 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:56:25.794 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 05:56:26.744 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:26.744 -07 000000437 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:56:26.754 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:26.754 -07 000000611 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:26.784 -07 000000611 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:26.784 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:56:26.784 -07 000000611 INF: Y Motor: Moved to 70.6875 after 1462 ms (table move)
17-03-18 05:56:26.784 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173729 mm (DAC = 37951)
17-03-18 05:56:26.784 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.784 -07 000000611 INF: FPGA: Recv ZSGSRD 36337
17-03-18 05:56:26.794 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:56:26.794 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.794 -07 000000487 INF: FPGA: Recv ZSGSRD 36330
17-03-18 05:56:26.804 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.804 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.804 -07 000000611 INF: FPGA: Recv ZSGSRD 36327
17-03-18 05:56:26.814 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.814 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.814 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:26.814 -07 000000437 INF: FPGA: Recv ZSGSRD 36329
17-03-18 05:56:26.824 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.824 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.824 -07 000000437 INF: FPGA: Recv ZSGSRD 36330
17-03-18 05:56:26.834 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.834 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.834 -07 000000447 INF: FPGA: Recv ZSGSRD 36340
17-03-18 05:56:26.844 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.844 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.844 -07 000000447 INF: FPGA: Recv ZSGSRD 36338
17-03-18 05:56:26.854 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.854 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.854 -07 000000447 INF: FPGA: Recv ZSGSRD 36336
17-03-18 05:56:26.864 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.864 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.864 -07 000000447 INF: FPGA: Recv ZSGSRD 36340
17-03-18 05:56:26.874 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.874 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:26.874 -07 000000447 INF: FPGA: Recv ZSGSRD 36329
17-03-18 05:56:26.884 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.884 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:26.884 -07 000000611 INF: FPGA: Recv ZPIEZORD 32413
17-03-18 05:56:26.894 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.7 V.
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36334 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36333 (-172.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36327 (-172.8 uncal um), Max = 36340 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36334, posNoise = 6, negNoise = 7
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: After move to -0.173729, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: Settle wait time = 1464 ms, measure time = 106 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:56:26.894 -07 000000012 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:26.944 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:56:26.944 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:26.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:26.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:26.944 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:26.944 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:26.944 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:26.944 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:26.944 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:26.944 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:26.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:26.954 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:26.964 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:56:26.964 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:56:26.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:27.014 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:27.314 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:27.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:27.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:27.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:27.354 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:27.354 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:27.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:56:27.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:27.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:27.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:27.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:56:27.454 -07 000000447 INF: Autofocus start
17-03-18 05:56:27.454 -07 000000447 INF: MeasureProfile start
17-03-18 05:56:27.454 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:27.454 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:27.464 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:27.464 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:27.464 -07 000000447 INF: MeasureProfile done
17-03-18 05:56:27.464 -07 000000447 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:56:27.464 -07 000000447 INF: Autofocus finished
17-03-18 05:56:27.664 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:27.664 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:27.664 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173740675969878. ----------
17-03-18 05:56:27.664 -07 000000610 INF: Cycle	143	Tile	14	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:27.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36484, sync = True, waitForSettling = True)
17-03-18 05:56:27.674 -07 000000610 INF: Z Motor: Moving to -0.167013 mm, started at -0.173741 mm, distance = 6.73 um
17-03-18 05:56:27.674 -07 000000610 INF: FPGA: Xmit ZDACW 36484\n [Z Motor]
17-03-18 05:56:27.674 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:56:27.684 -07 000000610 INF: FPGA: 'ZDACW 36484' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:27.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:27.684 -07 000000561 INF: FPGA: Recv ZDACR 36484
17-03-18 05:56:27.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.844 -07 000000561 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:56:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.854 -07 000000561 INF: FPGA: Recv ZSGSRD 35291
17-03-18 05:56:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.864 -07 000000561 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:56:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.874 -07 000000561 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:56:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.884 -07 000000561 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:56:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.894 -07 000000561 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:56:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.904 -07 000000561 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:56:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.914 -07 000000611 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:56:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.924 -07 000000447 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:56:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:27.934 -07 000000611 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:56:27.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:27.944 -07 000000012 INF: FPGA: Recv ZPIEZORD 31021
17-03-18 05:56:27.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:27.954 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.4 V.
17-03-18 05:56:27.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35286 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:56:27.954 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 3, negNoise = 2
17-03-18 05:56:27.954 -07 000000610 INF: Z Motor: After move to -0.167013, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:27.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:56:27.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:27.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:27.954 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:27.954 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:27.954 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:27.954 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:27.954 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:27.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:27.954 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:56:27.954 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:27.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:27.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:27.964 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:27.964 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:27.964 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:27.964 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:27.974 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:27.974 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:27.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:27.974 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:27.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36660 150\n [Camera]
17-03-18 05:56:28.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:28.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:28.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:28.624 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:28.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:28.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:28.624 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:28.624 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:28.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:28.634 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:28.634 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:56:28.814 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36660 833
17-03-18 05:56:28.964 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:29.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:56:29.004 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:56:29.004 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:29.014 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:56:29.014 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:56:29.014 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:29.014 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:29.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:56:29.014 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:56:29.024 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:56:29.174 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:29.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:29.184 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:29.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:29.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:29.184 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:29.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:29.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:56:29.194 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:29.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:56:29.374 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:56:29.374 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:29.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36660 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-18 05:56:29.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:29.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167020950069596. ------
17-03-18 05:56:29.374 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:29.374 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17367 mm
17-03-18 05:56:29.374 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:29.374 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:56:29.374 -07 000000611 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:56:29.374 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37938, sync = True, waitForSettling = False)
17-03-18 05:56:29.504 -07 000000444 INF: Z Motor: Moving to -0.173669 mm, started at -0.167021 mm, distance = -6.65 um
17-03-18 05:56:29.504 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:29.504 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 05:56:29.504 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:29.504 -07 000000437 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:56:29.514 -07 000000611 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 05:56:29.514 -07 000000611 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:29.514 -07 000000611 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:29.514 -07 000000611 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:56:29.514 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:29.524 -07 000000444 INF: FPGA: Xmit ZDACW 37938\n [Z Motor]
17-03-18 05:56:29.524 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:56:29.534 -07 000000444 INF: FPGA: 'ZDACW 37938' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:29.534 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:29.544 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:29.544 -07 000000561 INF: FPGA: Recv ZDACR 37938
17-03-18 05:56:29.554 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:29.554 -07 000000444 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:56:29.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:56:29.574 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:56:29.574 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:29.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:56:29.574 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:56:29.574 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:29.574 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:29.584 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:56:29.584 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:56:29.584 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:56:29.714 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:29.714 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:56:29.904 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:56:29.904 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:56:29.954 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:29.964 -07 000000581 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:56:29.974 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:29.974 -07 000000611 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:29.974 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:56:29.974 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 05:56:30.924 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:30.924 -07 000000561 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:56:30.934 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:30.934 -07 000000611 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:30.964 -07 000000611 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:30.964 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:30.964 -07 000000611 INF: Y Motor: Moved to 71.5176 after 1584 ms (table move)
17-03-18 05:56:30.964 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173669 mm (DAC = 37938)
17-03-18 05:56:30.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:30.964 -07 000000447 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:56:30.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:30.974 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:30.974 -07 000000480 INF: FPGA: Recv ZSGSRD 36331
17-03-18 05:56:30.984 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:30.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:30.984 -07 000000444 INF: FPGA: Recv ZSGSRD 36328
17-03-18 05:56:30.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:30.994 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:30.994 -07 000000437 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:56:31.004 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.004 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.004 -07 000000581 INF: FPGA: Recv ZSGSRD 36318
17-03-18 05:56:31.014 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.014 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.014 -07 000000437 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:56:31.024 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.024 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.024 -07 000000581 INF: FPGA: Recv ZSGSRD 36327
17-03-18 05:56:31.034 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.034 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.034 -07 000000437 INF: FPGA: Recv ZSGSRD 36330
17-03-18 05:56:31.044 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.044 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.044 -07 000000581 INF: FPGA: Recv ZSGSRD 36325
17-03-18 05:56:31.054 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.054 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:31.054 -07 000000437 INF: FPGA: Recv ZSGSRD 36325
17-03-18 05:56:31.064 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.074 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:31.074 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.030322,
17-03-18 05:56:31.074 -07 000000437 INF: FPGA: Recv ZPIEZORD 32447
17-03-18 05:56:31.084 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.6 V.
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36325 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36325 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36318 (-172.8 uncal um), Max = 36331 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36325, posNoise = 6, negNoise = 7
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: After move to -0.173669, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: Settle wait time = 1466 ms, measure time = 114 ms (allowed 150 ms), total time = 1580 ms
17-03-18 05:56:31.084 -07 000000487 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:31.124 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 05:56:31.124 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:31.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:31.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:31.124 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:31.124 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:31.124 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:31.124 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:31.124 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:56:31.124 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:31.134 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:31.134 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:31.134 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:31.134 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:56:31.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:31.184 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:31.484 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:31.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:31.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:31.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:31.524 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:31.524 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:31.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:56:31.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:56:31.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:31.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:56:31.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:56:31.624 -07 000000480 INF: Autofocus start
17-03-18 05:56:31.624 -07 000000480 INF: MeasureProfile start
17-03-18 05:56:31.624 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:31.624 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:31.634 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:31.634 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:31.634 -07 000000480 INF: MeasureProfile done
17-03-18 05:56:31.634 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:56:31.634 -07 000000480 INF: Autofocus finished
17-03-18 05:56:31.814 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:31.834 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:31.834 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:31.834 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173682858060602. ----------
17-03-18 05:56:31.834 -07 000000610 INF: Cycle	143	Tile	15	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:31.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36453, sync = True, waitForSettling = True)
17-03-18 05:56:31.844 -07 000000610 INF: Z Motor: Moving to -0.166871 mm, started at -0.173683 mm, distance = 6.81 um
17-03-18 05:56:31.844 -07 000000610 INF: FPGA: Xmit ZDACW 36453\n [Z Motor]
17-03-18 05:56:31.844 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:56:31.854 -07 000000610 INF: FPGA: 'ZDACW 36453' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:31.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:31.854 -07 000000444 INF: FPGA: Recv ZDACR 36453
17-03-18 05:56:31.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:31.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:32.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.014 -07 000000611 INF: FPGA: Recv ZSGSRD 35268
17-03-18 05:56:32.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:32.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.024 -07 000000581 INF: FPGA: Recv ZSGSRD 35265
17-03-18 05:56:32.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.034 -07 000000487 INF: FPGA: Recv ZSGSRD 35266
17-03-18 05:56:32.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.044 -07 000000581 INF: FPGA: Recv ZSGSRD 35264
17-03-18 05:56:32.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35265
17-03-18 05:56:32.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.064 -07 000000447 INF: FPGA: Recv ZSGSRD 35267
17-03-18 05:56:32.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.074 -07 000000444 INF: FPGA: Recv ZSGSRD 35267
17-03-18 05:56:32.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35267
17-03-18 05:56:32.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.094 -07 000000444 INF: FPGA: Recv ZSGSRD 35265
17-03-18 05:56:32.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:32.104 -07 000000437 INF: FPGA: Recv ZSGSRD 35264
17-03-18 05:56:32.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:32.114 -07 000000561 INF: FPGA: Recv ZPIEZORD 31023
17-03-18 05:56:32.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:32.124 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-18 05:56:32.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35266 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35266 (-166.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35264 (-166.0 uncal um), Max = 35268 (-166.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:56:32.124 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35266, posNoise = 2, negNoise = 2
17-03-18 05:56:32.124 -07 000000610 INF: Z Motor: After move to -0.166871, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:32.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:56:32.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:32.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:32.124 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:32.124 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:32.124 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:32.124 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:32.124 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:32.124 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:32.124 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:32.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:32.124 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:32.124 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:32.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:32.124 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:32.124 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:32.124 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:32.134 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:32.134 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:32.134 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:32.134 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:32.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36630 150\n [Camera]
17-03-18 05:56:32.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:32.784 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:32.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:32.794 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:32.794 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:32.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:32.794 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:32.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:32.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:56:32.794 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:32.794 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:32.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36630 833
17-03-18 05:56:33.134 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:33.194 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:56:33.194 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:56:33.194 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:33.194 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:33.194 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:56:33.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:56:33.194 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:56:33.194 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:33.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:33.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:56:33.344 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:33.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:33.344 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:33.344 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:33.344 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 05:56:33.354 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:33.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:33.354 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:33.354 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:33.354 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:56:33.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:56:33.534 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:33.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36630 150' command took 2 ms to send, 1389 ms to get response, and 1398 ms overall
17-03-18 05:56:33.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:33.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166879617402477. ------
17-03-18 05:56:33.544 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:33.544 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17331 mm
17-03-18 05:56:33.544 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:33.544 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:56:33.544 -07 000000437 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 05:56:33.544 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37859, sync = True, waitForSettling = False)
17-03-18 05:56:33.544 -07 000000447 INF: Z Motor: Moving to -0.173307 mm, started at -0.166880 mm, distance = -6.43 um
17-03-18 05:56:33.554 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:33.554 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:33.554 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:56:33.554 -07 000000480 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:56:33.564 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:33.564 -07 000000437 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:33.564 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:33.564 -07 000000437 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:33.564 -07 000000437 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:56:33.574 -07 000000447 INF: FPGA: Xmit ZDACW 37859\n [Z Motor]
17-03-18 05:56:33.574 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:56:33.584 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:33.584 -07 000000447 INF: FPGA: 'ZDACW 37859' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:56:33.594 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:33.594 -07 000000480 INF: FPGA: Recv ZDACR 37859
17-03-18 05:56:33.604 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:33.604 -07 000000447 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:56:33.754 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:56:33.754 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:56:33.754 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:33.754 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:56:33.754 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:56:33.754 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:33.754 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:33.754 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:56:33.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:33.764 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:33.764 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:56:33.764 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:56:33.954 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:56:33.954 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:56:34.004 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:34.014 -07 000000447 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:56:34.014 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:34.014 -07 000000437 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:34.014 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:56:34.014 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:56:34.964 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:34.964 -07 000000447 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:56:34.974 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:34.974 -07 000000437 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:35.004 -07 000000437 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:35.004 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:35.004 -07 000000437 INF: Y Motor: Moved to 72.3481 after 1452 ms (table move)
17-03-18 05:56:35.004 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173307 mm (DAC = 37859)
17-03-18 05:56:35.004 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.014 -07 000000012 INF: FPGA: Recv ZSGSRD 36263
17-03-18 05:56:35.014 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:56:35.014 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.014 -07 000000437 INF: FPGA: Recv ZSGSRD 36271
17-03-18 05:56:35.024 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.024 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.024 -07 000000012 INF: FPGA: Recv ZSGSRD 36258
17-03-18 05:56:35.034 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.034 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.034 -07 000000447 INF: FPGA: Recv ZSGSRD 36268
17-03-18 05:56:35.044 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.044 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.044 -07 000000480 INF: FPGA: Recv ZSGSRD 36262
17-03-18 05:56:35.054 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.054 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.054 -07 000000447 INF: FPGA: Recv ZSGSRD 36272
17-03-18 05:56:35.064 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.064 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.064 -07 000000608 INF: FPGA: Recv ZSGSRD 36274
17-03-18 05:56:35.074 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.074 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.074 -07 000000447 INF: FPGA: Recv ZSGSRD 36265
17-03-18 05:56:35.084 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.084 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.084 -07 000000480 INF: FPGA: Recv ZSGSRD 36269
17-03-18 05:56:35.094 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.094 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:35.094 -07 000000012 INF: FPGA: Recv ZSGSRD 36270
17-03-18 05:56:35.104 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:35.104 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:35.104 -07 000000444 INF: FPGA: Recv ZPIEZORD 32361
17-03-18 05:56:35.114 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.6 V.
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36267 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36268 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36258 (-172.4 uncal um), Max = 36274 (-172.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36267, posNoise = 7, negNoise = 9
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: After move to -0.173307, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: Settle wait time = 1455 ms, measure time = 106 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:56:35.114 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:35.164 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:56:35.164 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:35.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:35.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:35.164 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:35.164 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:35.164 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:35.164 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:35.164 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:56:35.164 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:35.164 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:35.164 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:35.184 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:56:35.184 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:56:35.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:35.234 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:35.524 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:35.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:35.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:35.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:56:35.564 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:35.574 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:35.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:56:35.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:35.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:35.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:35.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:56:35.674 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:35.674 -07 000000444 INF: Autofocus start
17-03-18 05:56:35.674 -07 000000444 INF: MeasureProfile start
17-03-18 05:56:35.674 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:35.684 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:35.684 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:35.684 -07 000000444 INF: MeasureProfile done
17-03-18 05:56:35.684 -07 000000444 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:56:35.684 -07 000000444 INF: Autofocus finished
17-03-18 05:56:35.884 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:35.884 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:56:35.884 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.17331025375638. ----------
17-03-18 05:56:35.884 -07 000000610 INF: Cycle	143	Tile	16	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:35.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36356, sync = True, waitForSettling = True)
17-03-18 05:56:35.894 -07 000000610 INF: Z Motor: Moving to -0.166427 mm, started at -0.173310 mm, distance = 6.88 um
17-03-18 05:56:35.894 -07 000000610 INF: FPGA: Xmit ZDACW 36356\n [Z Motor]
17-03-18 05:56:35.894 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:56:35.904 -07 000000610 INF: FPGA: 'ZDACW 36356' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:35.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:35.904 -07 000000447 INF: FPGA: Recv ZDACR 36356
17-03-18 05:56:35.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:35.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:36.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.064 -07 000000444 INF: FPGA: Recv ZSGSRD 35194
17-03-18 05:56:36.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.074 -07 000000608 INF: FPGA: Recv ZSGSRD 35202
17-03-18 05:56:36.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.084 -07 000000611 INF: FPGA: Recv ZSGSRD 35199
17-03-18 05:56:36.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.094 -07 000000437 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:56:36.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35198
17-03-18 05:56:36.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35201
17-03-18 05:56:36.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:56:36.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:36.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.144 -07 000000012 INF: FPGA: Recv ZSGSRD 35190
17-03-18 05:56:36.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35199
17-03-18 05:56:36.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:36.164 -07 000000437 INF: FPGA: Recv ZSGSRD 35201
17-03-18 05:56:36.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:36.174 -07 000000444 INF: FPGA: Recv ZPIEZORD 30941
17-03-18 05:56:36.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:36.184 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.4 V.
17-03-18 05:56:36.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35198 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35198 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35190 (-165.5 uncal um), Max = 35202 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:56:36.184 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35198, posNoise = 4, negNoise = 8
17-03-18 05:56:36.184 -07 000000610 INF: Z Motor: After move to -0.166427, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:36.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:56:36.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:36.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:36.184 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:36.184 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:36.184 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:36.184 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:36.184 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:36.184 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:36.184 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:36.184 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:36.184 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:56:36.184 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:36.184 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:36.184 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:36.184 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:36.184 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:36.204 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:56:36.204 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:56:36.204 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:56:36.204 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:56:36.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36533 150\n [Camera]
17-03-18 05:56:36.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:36.444 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.027603,
17-03-18 05:56:36.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:36.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 641
17-03-18 05:56:36.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 641
17-03-18 05:56:36.854 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:36.854 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:36.854 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:56:36.854 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 641
17-03-18 05:56:36.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 641
17-03-18 05:56:36.854 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:36.854 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:36.854 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:56:37.044 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36533 833
17-03-18 05:56:37.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:37.234 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:56:37.234 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:56:37.234 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:37.234 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:56:37.234 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:56:37.234 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:37.234 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:37.244 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:37.244 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:56:37.244 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:56:37.414 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-18 05:56:37.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-18 05:56:37.414 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:37.414 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-18 05:56:37.414 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:37.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:56:37.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-18 05:56:37.414 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:37.414 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:37.414 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:56:37.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:56:37.604 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:37.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36533 150' command took 2 ms to send, 1393 ms to get response, and 1399 ms overall
17-03-18 05:56:37.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:37.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166442770976837. ------
17-03-18 05:56:37.604 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:37.604 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17290 mm
17-03-18 05:56:37.604 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:37.614 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:56:37.614 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 05:56:37.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:37.614 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:37.614 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:56:37.614 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37770, sync = True, waitForSettling = False)
17-03-18 05:56:37.614 -07 000000608 INF: Z Motor: Moving to -0.172900 mm, started at -0.166443 mm, distance = -6.46 um
17-03-18 05:56:37.614 -07 000000012 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:56:37.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:37.624 -07 000000444 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:37.624 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:37.624 -07 000000444 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:56:37.624 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:37.634 -07 000000608 INF: FPGA: Xmit ZDACW 37770\n [Z Motor]
17-03-18 05:56:37.634 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:56:37.754 -07 000000608 INF: FPGA: 'ZDACW 37770' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 05:56:37.754 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:37.764 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:37.764 -07 000000480 INF: FPGA: Recv ZDACR 37770
17-03-18 05:56:37.774 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:56:37.774 -07 000000608 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-18 05:56:37.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:56:37.824 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:56:37.824 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:37.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:56:37.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:56:37.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:37.824 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:37.824 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:56:37.824 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:37.824 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:37.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:56:37.834 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:56:38.134 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:56:38.134 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 373 ms to get response, and 512 ms overall
17-03-18 05:56:38.184 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:38.184 -07 000000561 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:56:38.194 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:56:38.194 -07 000000444 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:38.194 -07 000000444 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:56:38.194 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 512 ms, distance = 0.844 mm, average velocity = 1.649 mm/sec
17-03-18 05:56:39.144 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:39.144 -07 000000437 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:56:39.154 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:39.154 -07 000000444 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:39.184 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:39.184 -07 000000444 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:39.184 -07 000000444 INF: Y Motor: Moved to 73.1748 after 1573 ms (table move)
17-03-18 05:56:39.184 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172900 mm (DAC = 37770)
17-03-18 05:56:39.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.204 -07 000000625 INF: FPGA: Recv ZSGSRD 36201
17-03-18 05:56:39.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:56:39.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.214 -07 000000447 INF: FPGA: Recv ZSGSRD 36208
17-03-18 05:56:39.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.234 -07 000000591 INF: FPGA: Recv ZSGSRD 36206
17-03-18 05:56:39.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:39.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.244 -07 000000012 INF: FPGA: Recv ZSGSRD 36203
17-03-18 05:56:39.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.254 -07 000000561 INF: FPGA: Recv ZSGSRD 36209
17-03-18 05:56:39.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.264 -07 000000606 INF: FPGA: Recv ZSGSRD 36199
17-03-18 05:56:39.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.274 -07 000000437 INF: FPGA: Recv ZSGSRD 36205
17-03-18 05:56:39.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.284 -07 000000479 INF: FPGA: Recv ZSGSRD 36207
17-03-18 05:56:39.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36208
17-03-18 05:56:39.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:39.304 -07 000000479 INF: FPGA: Recv ZSGSRD 36211
17-03-18 05:56:39.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.314 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:39.314 -07 000000606 INF: FPGA: Recv ZPIEZORD 32273
17-03-18 05:56:39.324 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.7 V.
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36206 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36206 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36199 (-172.0 uncal um), Max = 36211 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36206, posNoise = 5, negNoise = 7
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: After move to -0.172900, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: Settle wait time = 1576 ms, measure time = 132 ms (allowed 150 ms), total time = 1708 ms
17-03-18 05:56:39.324 -07 000000512 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:39.344 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 05:56:39.344 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:39.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:39.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:39.344 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:39.344 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:39.344 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:39.344 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:39.344 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:39.344 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:39.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:39.354 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:39.364 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:56:39.364 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:56:39.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:39.414 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:56:39.714 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:56:39.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:56:39.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:39.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:39.754 -07 000000606 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:56:39.754 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:39.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 05:56:39.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:56:39.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:39.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:56:39.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:56:39.854 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:39.854 -07 000000437 INF: Autofocus start
17-03-18 05:56:39.854 -07 000000437 INF: MeasureProfile start
17-03-18 05:56:39.854 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:39.864 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:39.864 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:39.864 -07 000000437 INF: MeasureProfile done
17-03-18 05:56:39.864 -07 000000437 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:56:39.864 -07 000000437 INF: Autofocus finished
17-03-18 05:56:40.064 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:40.064 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:40.074 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172918376815732. ----------
17-03-18 05:56:40.074 -07 000000610 INF: Cycle	143	Tile	17	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:40.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36321, sync = True, waitForSettling = True)
17-03-18 05:56:40.074 -07 000000610 INF: Z Motor: Moving to -0.166267 mm, started at -0.172918 mm, distance = 6.65 um
17-03-18 05:56:40.074 -07 000000610 INF: FPGA: Xmit ZDACW 36321\n [Z Motor]
17-03-18 05:56:40.074 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:56:40.084 -07 000000610 INF: FPGA: 'ZDACW 36321' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:40.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:40.084 -07 000000608 INF: FPGA: Recv ZDACR 36321
17-03-18 05:56:40.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:40.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35167
17-03-18 05:56:40.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:40.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-18 05:56:40.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.264 -07 000000012 INF: FPGA: Recv ZSGSRD 35173
17-03-18 05:56:40.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.274 -07 000000606 INF: FPGA: Recv ZSGSRD 35169
17-03-18 05:56:40.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.284 -07 000000012 INF: FPGA: Recv ZSGSRD 35171
17-03-18 05:56:40.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.294 -07 000000561 INF: FPGA: Recv ZSGSRD 35167
17-03-18 05:56:40.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.304 -07 000000437 INF: FPGA: Recv ZSGSRD 35173
17-03-18 05:56:40.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.314 -07 000000608 INF: FPGA: Recv ZSGSRD 35174
17-03-18 05:56:40.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:40.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.324 -07 000000012 INF: FPGA: Recv ZSGSRD 35171
17-03-18 05:56:40.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:40.334 -07 000000512 INF: FPGA: Recv ZSGSRD 35171
17-03-18 05:56:40.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:40.344 -07 000000444 INF: FPGA: Recv ZPIEZORD 30905
17-03-18 05:56:40.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:40.354 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.4 V.
17-03-18 05:56:40.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35171 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35171 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35167 (-165.4 uncal um), Max = 35174 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:56:40.354 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35171, posNoise = 3, negNoise = 4
17-03-18 05:56:40.354 -07 000000610 INF: Z Motor: After move to -0.166267, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:40.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:56:40.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:40.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:40.354 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:40.354 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:40.354 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:40.354 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:40.354 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:40.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:40.354 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:40.354 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:40.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:40.354 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:40.364 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:56:40.364 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:40.364 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:56:40.364 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:40.374 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:56:40.374 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:56:40.374 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:56:40.374 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:56:40.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36497 150\n [Camera]
17-03-18 05:56:40.574 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:41.024 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:41.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:41.024 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:41.024 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:41.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:41.024 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:41.024 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:41.024 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:41.034 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:41.034 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:56:41.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36497 833
17-03-18 05:56:41.364 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:41.404 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:56:41.404 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 05:56:41.404 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:41.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:56:41.404 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:56:41.404 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:41.404 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:41.404 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:56:41.404 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:56:41.414 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:56:41.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:41.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:41.584 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:41.584 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:41.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:41.584 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:41.584 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:41.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:56:41.594 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:41.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:56:41.774 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:41.774 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:41.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36497 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-18 05:56:41.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:41.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.16626931724901. ------
17-03-18 05:56:41.894 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:41.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:41.894 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17225 mm
17-03-18 05:56:41.894 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:41.904 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.016692,
17-03-18 05:56:41.904 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:56:41.904 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:56:41.904 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37628, sync = True, waitForSettling = False)
17-03-18 05:56:41.904 -07 000000591 INF: Z Motor: Moving to -0.172250 mm, started at -0.166269 mm, distance = -5.98 um
17-03-18 05:56:41.914 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:41.914 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:41.924 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:56:41.924 -07 000000591 INF: FPGA: Xmit ZDACW 37628\n [Z Motor]
17-03-18 05:56:41.924 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:56:41.934 -07 000000591 INF: FPGA: 'ZDACW 37628' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:56:41.934 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:41.934 -07 000000455 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:56:41.944 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 05:56:41.944 -07 000000382 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:41.944 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:41.944 -07 000000382 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:56:41.954 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:41.964 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:41.964 -07 000000455 INF: FPGA: Recv ZDACR 37628
17-03-18 05:56:41.974 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:41.974 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:56:41.974 -07 000000591 INF: Z Motor: MoveAbsStepped took 68 ms (did NOT wait for settling yet))
17-03-18 05:56:41.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:56:41.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:56:41.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:41.974 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:56:41.974 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:56:41.974 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:41.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:41.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:56:41.984 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:56:41.994 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:56:42.154 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:42.154 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 05:56:42.344 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:56:42.344 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 407 ms overall
17-03-18 05:56:42.384 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:42.394 -07 000000581 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:56:42.394 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:56:42.394 -07 000000382 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:42.394 -07 000000382 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:56:42.394 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.848 mm, average velocity = 2.083 mm/sec
17-03-18 05:56:43.344 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:43.344 -07 000000487 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:56:43.354 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.354 -07 000000382 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:43.374 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:43.374 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:43.374 -07 000000382 INF: Y Motor: Moved to 74.0068 after 1477 ms (table move)
17-03-18 05:56:43.384 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172250 mm (DAC = 37628)
17-03-18 05:56:43.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36103
17-03-18 05:56:43.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:43.394 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.394 -07 000000462 INF: FPGA: Recv ZSGSRD 36107
17-03-18 05:56:43.404 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.404 -07 000000487 INF: FPGA: Recv ZSGSRD 36094
17-03-18 05:56:43.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.414 -07 000000479 INF: FPGA: Recv ZSGSRD 36097
17-03-18 05:56:43.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.424 -07 000000437 INF: FPGA: Recv ZSGSRD 36099
17-03-18 05:56:43.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.434 -07 000000012 INF: FPGA: Recv ZSGSRD 36103
17-03-18 05:56:43.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.444 -07 000000444 INF: FPGA: Recv ZSGSRD 36104
17-03-18 05:56:43.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.454 -07 000000455 INF: FPGA: Recv ZSGSRD 36094
17-03-18 05:56:43.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.464 -07 000000606 INF: FPGA: Recv ZSGSRD 36110
17-03-18 05:56:43.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:43.474 -07 000000512 INF: FPGA: Recv ZSGSRD 36101
17-03-18 05:56:43.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.484 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:43.484 -07 000000591 INF: FPGA: Recv ZPIEZORD 32165
17-03-18 05:56:43.494 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.7 V.
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36101 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36102 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36110 (-171.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36101, posNoise = 9, negNoise = 7
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: After move to -0.172250, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: Settle wait time = 1480 ms, measure time = 108 ms (allowed 150 ms), total time = 1588 ms
17-03-18 05:56:43.494 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:43.544 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1643 ms
17-03-18 05:56:43.544 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:43.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:43.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:43.544 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:43.544 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:43.544 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:43.544 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:43.554 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:43.554 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:43.554 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:43.554 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:43.564 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:56:43.564 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:56:43.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:43.614 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:56:43.914 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:56:43.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:56:43.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:43.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:43.944 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:43.944 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:43.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 05:56:44.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:44.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:44.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:44.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:56:44.054 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:44.054 -07 000000437 INF: Autofocus start
17-03-18 05:56:44.054 -07 000000437 INF: MeasureProfile start
17-03-18 05:56:44.054 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:44.064 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:44.064 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:44.064 -07 000000437 INF: MeasureProfile done
17-03-18 05:56:44.064 -07 000000437 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:56:44.064 -07 000000437 INF: Autofocus finished
17-03-18 05:56:44.264 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:44.264 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:44.264 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172243834540847. ----------
17-03-18 05:56:44.264 -07 000000610 INF: Cycle	143	Tile	18	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:44.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36125, sync = True, waitForSettling = True)
17-03-18 05:56:44.274 -07 000000610 INF: Z Motor: Moving to -0.165370 mm, started at -0.172244 mm, distance = 6.87 um
17-03-18 05:56:44.274 -07 000000610 INF: FPGA: Xmit ZDACW 36125\n [Z Motor]
17-03-18 05:56:44.274 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:56:44.284 -07 000000610 INF: FPGA: 'ZDACW 36125' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:44.284 -07 000000437 INF: FPGA: Recv ZDACR 36125
17-03-18 05:56:44.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:44.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.444 -07 000000561 INF: FPGA: Recv ZSGSRD 35033
17-03-18 05:56:44.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.454 -07 000000608 INF: FPGA: Recv ZSGSRD 35035
17-03-18 05:56:44.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.464 -07 000000437 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:56:44.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35029
17-03-18 05:56:44.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.484 -07 000000581 INF: FPGA: Recv ZSGSRD 35035
17-03-18 05:56:44.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.494 -07 000000444 INF: FPGA: Recv ZSGSRD 35037
17-03-18 05:56:44.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.504 -07 000000382 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:56:44.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.514 -07 000000012 INF: FPGA: Recv ZSGSRD 35033
17-03-18 05:56:44.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.524 -07 000000512 INF: FPGA: Recv ZSGSRD 35039
17-03-18 05:56:44.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:44.534 -07 000000591 INF: FPGA: Recv ZSGSRD 35036
17-03-18 05:56:44.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:44.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:44.554 -07 000000012 INF: FPGA: Recv ZPIEZORD 30738
17-03-18 05:56:44.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:44.564 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.5 V.
17-03-18 05:56:44.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35034 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35034 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35029 (-164.5 uncal um), Max = 35039 (-164.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:56:44.564 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35034, posNoise = 5, negNoise = 5
17-03-18 05:56:44.564 -07 000000610 INF: Z Motor: After move to -0.165370, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:44.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 05:56:44.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:44.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:44.564 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:44.564 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:44.564 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:44.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:44.564 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:44.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:44.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:44.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:44.564 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:44.564 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:44.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:56:44.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:44.574 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:44.574 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:44.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:56:44.574 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:56:44.584 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:44.584 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:56:44.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36302 150\n [Camera]
17-03-18 05:56:44.794 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:45.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:45.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:45.244 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:45.254 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:45.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:45.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:45.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:45.254 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:45.254 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:45.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:56:45.444 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36302 833
17-03-18 05:56:45.594 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:45.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:56:45.644 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:56:45.644 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:45.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:56:45.644 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:56:45.644 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:45.644 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:45.644 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:56:45.654 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:56:45.654 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:56:45.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:45.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:45.804 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:45.804 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:45.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:56:45.804 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:45.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:45.814 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:45.814 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:45.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:56:45.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:45.994 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:45.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36302 150' command took 2 ms to send, 1388 ms to get response, and 1413 ms overall
17-03-18 05:56:46.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:56:46.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165389200185588. ------
17-03-18 05:56:46.004 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:46.004 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17174 mm
17-03-18 05:56:46.004 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:46.004 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:56:46.004 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:56:46.004 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37516, sync = True, waitForSettling = False)
17-03-18 05:56:46.004 -07 000000581 INF: Z Motor: Moving to -0.171737 mm, started at -0.165389 mm, distance = -6.35 um
17-03-18 05:56:46.004 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:46.014 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:46.014 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:46.014 -07 000000561 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:56:46.024 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:56:46.024 -07 000000512 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:46.024 -07 000000581 INF: FPGA: Xmit ZDACW 37516\n [Z Motor]
17-03-18 05:56:46.024 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:56:46.024 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:46.024 -07 000000512 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:56:46.034 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:46.034 -07 000000581 INF: FPGA: 'ZDACW 37516' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:56:46.044 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:46.054 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:46.054 -07 000000561 INF: FPGA: Recv ZDACR 37516
17-03-18 05:56:46.064 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:46.064 -07 000000581 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:56:46.204 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:56:46.204 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:56:46.204 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:46.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:56:46.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:56:46.204 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:46.214 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:46.214 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:46.214 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:56:46.214 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:56:46.234 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:46.234 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:56:46.414 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:56:46.414 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:56:46.454 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:46.454 -07 000000012 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:56:46.464 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:46.464 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:46.464 -07 000000512 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:56:46.464 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec
17-03-18 05:56:46.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:47.324 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.007176,
17-03-18 05:56:47.414 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:47.414 -07 000000455 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:56:47.424 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:47.424 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:47.444 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:47.444 -07 000000512 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:47.444 -07 000000512 INF: Y Motor: Moved to 74.8306 after 1434 ms (table move)
17-03-18 05:56:47.444 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171737 mm (DAC = 37516)
17-03-18 05:56:47.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36024
17-03-18 05:56:47.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:47.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.454 -07 000000561 INF: FPGA: Recv ZSGSRD 36025
17-03-18 05:56:47.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.464 -07 000000382 INF: FPGA: Recv ZSGSRD 36021
17-03-18 05:56:47.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.474 -07 000000561 INF: FPGA: Recv ZSGSRD 36028
17-03-18 05:56:47.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.484 -07 000000455 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:56:47.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.494 -07 000000012 INF: FPGA: Recv ZSGSRD 36028
17-03-18 05:56:47.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.504 -07 000000606 INF: FPGA: Recv ZSGSRD 36027
17-03-18 05:56:47.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.514 -07 000000581 INF: FPGA: Recv ZSGSRD 36019
17-03-18 05:56:47.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.524 -07 000000606 INF: FPGA: Recv ZSGSRD 36025
17-03-18 05:56:47.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:47.534 -07 000000581 INF: FPGA: Recv ZSGSRD 36020
17-03-18 05:56:47.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.544 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:47.544 -07 000000512 INF: FPGA: Recv ZPIEZORD 32049
17-03-18 05:56:47.554 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.8 V.
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36019 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 4, negNoise = 5
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: After move to -0.171737, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-18 05:56:47.554 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:47.604 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 05:56:47.604 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:47.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:47.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:47.604 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:47.604 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:47.604 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:47.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:47.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:56:47.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:47.614 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:47.614 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:47.624 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:56:47.624 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:56:47.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:47.664 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:47.964 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:47.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:47.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:47.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:56:48.004 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:48.004 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:48.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:56:48.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:56:48.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:48.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:48.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:56:48.114 -07 000000606 INF: Autofocus start
17-03-18 05:56:48.114 -07 000000606 INF: MeasureProfile start
17-03-18 05:56:48.114 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:48.124 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:48.124 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:56:48.124 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:48.134 -07 000000606 INF: MeasureProfile done
17-03-18 05:56:48.134 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:56:48.134 -07 000000606 INF: Autofocus finished
17-03-18 05:56:48.324 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:48.324 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:56:48.324 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171749170205932. ----------
17-03-18 05:56:48.334 -07 000000610 INF: Cycle	143	Tile	19	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:48.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36013, sync = True, waitForSettling = True)
17-03-18 05:56:48.334 -07 000000610 INF: Z Motor: Moving to -0.164857 mm, started at -0.171749 mm, distance = 6.89 um
17-03-18 05:56:48.334 -07 000000610 INF: FPGA: Xmit ZDACW 36013\n [Z Motor]
17-03-18 05:56:48.334 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:56:48.344 -07 000000610 INF: FPGA: 'ZDACW 36013' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:48.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:48.344 -07 000000455 INF: FPGA: Recv ZDACR 36013
17-03-18 05:56:48.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:48.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.504 -07 000000611 INF: FPGA: Recv ZSGSRD 34952
17-03-18 05:56:48.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:48.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.514 -07 000000012 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:56:48.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.524 -07 000000611 INF: FPGA: Recv ZSGSRD 34948
17-03-18 05:56:48.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.534 -07 000000012 INF: FPGA: Recv ZSGSRD 34946
17-03-18 05:56:48.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.544 -07 000000591 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:56:48.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.554 -07 000000455 INF: FPGA: Recv ZSGSRD 34955
17-03-18 05:56:48.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.564 -07 000000012 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:56:48.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.574 -07 000000512 INF: FPGA: Recv ZSGSRD 34956
17-03-18 05:56:48.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.584 -07 000000382 INF: FPGA: Recv ZSGSRD 34954
17-03-18 05:56:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:48.594 -07 000000606 INF: FPGA: Recv ZSGSRD 34956
17-03-18 05:56:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:48.604 -07 000000382 INF: FPGA: Recv ZPIEZORD 30632
17-03-18 05:56:48.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:48.614 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.495 V. Piezo Error = -9.5 V.
17-03-18 05:56:48.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34954 (-164.0 uncal um), Error = 0.8 uncal um, Median = 34956 (-164.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34946 (-164.0 uncal um), Max = 34957 (-164.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:56:48.614 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34954, posNoise = 3, negNoise = 8
17-03-18 05:56:48.614 -07 000000610 INF: Z Motor: After move to -0.164857, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:48.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:56:48.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:48.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:48.614 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:48.614 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:48.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:48.614 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:48.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:48.614 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:48.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:48.614 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:48.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:48.614 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:48.624 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:56:48.624 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:48.624 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:48.624 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:48.634 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:56:48.634 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:56:48.634 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:56:48.634 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:56:48.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36190 150\n [Camera]
17-03-18 05:56:48.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:49.284 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:49.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:49.284 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:49.284 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:49.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:56:49.284 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:49.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:49.284 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:49.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:49.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:56:49.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36190 833
17-03-18 05:56:49.624 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:49.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:56:49.654 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:56:49.654 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:49.664 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:56:49.664 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:56:49.664 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:49.664 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:49.664 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:49.664 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:56:49.674 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:56:49.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:49.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:49.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:49.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:49.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:56:49.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:49.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:49.844 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:49.844 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:49.844 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:56:50.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:50.034 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:50.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36190 150' command took 2 ms to send, 1393 ms to get response, and 1397 ms overall
17-03-18 05:56:50.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:56:50.244 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:56:50.244 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:50.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:56:50.244 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:56:50.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:50.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:50.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:50.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:56:50.254 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:56:50.254 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:56:50.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:56:50.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:56:50.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:56:50.344 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:56:50.344 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:56:50.344 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 05:56:50.354 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:56:50.354 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:56:50.854 -07 000000561 INF: FPGA: Recv EMIN
17-03-18 05:56:50.854 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-18 05:56:50.984 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:56:50.984 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 05:56:50.994 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:56:50.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:56:50.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164875263214247. ------
17-03-18 05:56:50.994 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:50.994 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13932 mm
17-03-18 05:56:50.994 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:50.994 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:56:50.994 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:50.994 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-18 05:56:50.994 -07 000000012 INF: Z Motor: Moving to -0.139322 mm, started at -0.164875 mm, distance = 25.55 um
17-03-18 05:56:51.004 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:56:51.004 -07 000000012 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-18 05:56:51.004 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 05:56:51.004 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:56:51.014 -07 000000012 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:51.014 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:51.014 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:56:51.024 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:56:51.024 -07 000000382 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:51.024 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:51.024 -07 000000382 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:56:51.024 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:56:51.034 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:51.034 -07 000000480 INF: FPGA: Recv ZDACR 30435
17-03-18 05:56:51.044 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:51.044 -07 000000012 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:56:51.044 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:56:51.224 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:51.224 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:56:51.814 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:52.664 -07 000000606 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 05:56:52.664 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1639 ms overall
17-03-18 05:56:52.664 -07 000000382 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:56:52.664 -07 000000382 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:56:52.664 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1639 ms, distance = 14.918 mm, average velocity = 9.102 mm/sec
17-03-18 05:56:52.684 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.037119,
17-03-18 05:56:55.514 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:55.514 -07 000000606 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:56:55.524 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:55.524 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:55.564 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:55.564 -07 000000382 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:56:55.564 -07 000000382 INF: Y Motor: Moved to 59.9102 after 4563 ms
17-03-18 05:56:55.564 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-18 05:56:55.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.564 -07 000000480 INF: FPGA: Recv ZSGSRD 30976
17-03-18 05:56:55.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:56:55.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.574 -07 000000512 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:56:55.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:56:55.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30983
17-03-18 05:56:55.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.604 -07 000000591 INF: FPGA: Recv ZSGSRD 30969
17-03-18 05:56:55.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.614 -07 000000512 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:56:55.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.624 -07 000000611 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:56:55.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.634 -07 000000012 INF: FPGA: Recv ZSGSRD 30977
17-03-18 05:56:55.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.644 -07 000000591 INF: FPGA: Recv ZSGSRD 30987
17-03-18 05:56:55.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:55.654 -07 000000512 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:56:55.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.664 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:55.664 -07 000000480 INF: FPGA: Recv ZPIEZORD 26459
17-03-18 05:56:55.674 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.9 V.
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30976 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30969 (-138.5 uncal um), Max = 30987 (-138.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30976, posNoise = 11, negNoise = 7
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: After move to -0.139322, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: Settle wait time = 4566 ms, measure time = 105 ms (allowed 150 ms), total time = 4671 ms
17-03-18 05:56:55.674 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:55.724 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 05:56:55.724 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:55.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:55.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:55.724 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:55.724 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:55.724 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:55.724 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:55.734 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:55.734 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:56:55.754 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 05:56:55.754 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:55.754 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:55.754 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:55.764 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:56:55.764 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-18 05:56:55.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:56:55.814 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:56:56.114 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:56:56.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:56:56.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:56:56.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:56:56.154 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:56:56.154 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:56:56.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:56:56.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:56:56.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:56.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:56:56.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:56:56.254 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:56.254 -07 000000625 INF: Image SNR check: start
17-03-18 05:56:56.254 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:56.264 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:56.264 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:56:56.264 -07 000000625 INF: Image SNR check: pass  [peak (Max-Min)=118.46]
17-03-18 05:56:56.264 -07 000000625 INF: Autofocus start
17-03-18 05:56:56.264 -07 000000625 INF: MeasureProfile start
17-03-18 05:56:56.284 -07 000000625 INF: MeasureProfile done
17-03-18 05:56:56.284 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:56:56.284 -07 000000625 INF: Autofocus finished
17-03-18 05:56:56.464 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:56:56.464 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:56:56.464 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139319747314322. ----------
17-03-18 05:56:56.464 -07 000000610 INF: Cycle	143	Tile	1	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:56:56.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-18 05:56:56.474 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139320 mm, distance = 6.83 um
17-03-18 05:56:56.474 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-18 05:56:56.474 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:56:56.484 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:56.484 -07 000000625 INF: FPGA: Recv ZDACR 28943
17-03-18 05:56:56.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:56:56.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.644 -07 000000561 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:56:56.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:56.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.654 -07 000000382 INF: FPGA: Recv ZSGSRD 29905
17-03-18 05:56:56.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:56:56.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.674 -07 000000591 INF: FPGA: Recv ZSGSRD 29907
17-03-18 05:56:56.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.684 -07 000000611 INF: FPGA: Recv ZSGSRD 29918
17-03-18 05:56:56.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.694 -07 000000512 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:56:56.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.704 -07 000000012 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:56:56.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.714 -07 000000512 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:56:56.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:56:56.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:56.734 -07 000000512 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:56:56.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:56.744 -07 000000625 INF: FPGA: Recv ZPIEZORD 25353
17-03-18 05:56:56.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:56.754 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.0 V.
17-03-18 05:56:56.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29911 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29911 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29905 (-131.7 uncal um), Max = 29918 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:56:56.754 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29911, posNoise = 7, negNoise = 6
17-03-18 05:56:56.754 -07 000000610 INF: Z Motor: After move to -0.132493, error = 0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:56.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:56:56.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:56.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:56.754 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:56.754 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:56.754 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:56:56.754 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:56:56.754 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:56.754 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:56:56.754 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:56.754 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:56:56.754 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:56:56.754 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:56:56.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:56.764 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:56:56.764 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:56:56.764 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:56:56.774 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:56:56.774 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:56:56.784 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:56:56.784 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:56:56.784 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:56:56.784 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 05:56:56.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29119 150\n [Camera]
17-03-18 05:56:56.814 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:56:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:56:56.994 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:56:57.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:56:57.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:56:57.444 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:57.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:56:57.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:56:57.444 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:57.444 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:57.444 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:56:57.454 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:57.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:56:57.634 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29119 833
17-03-18 05:56:57.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:56:57.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:56:57.824 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:56:57.824 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:57.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:57.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:56:57.824 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:56:57.824 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:56:57.824 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:57.834 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:57.834 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:56:57.994 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:56:57.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:56:57.994 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:56:57.994 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:56:57.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:56:58.004 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:56:58.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:56:58.004 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:56:58.004 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:56:58.004 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:56:58.044 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.012614,
17-03-18 05:56:58.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:56:58.184 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:56:58.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29119 150' command took 2 ms to send, 1389 ms to get response, and 1398 ms overall
17-03-18 05:56:58.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:56:58.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132477961383347. ------
17-03-18 05:56:58.194 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:56:58.194 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13886 mm
17-03-18 05:56:58.194 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:56:58.194 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:56:58.194 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:56:58.194 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:56:58.194 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30333, sync = True, waitForSettling = False)
17-03-18 05:56:58.194 -07 000000012 INF: Z Motor: Moving to -0.138856 mm, started at -0.132478 mm, distance = -6.38 um
17-03-18 05:56:58.204 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:56:58.204 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:58.204 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:56:58.214 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:56:58.214 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:58.214 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:56:58.214 -07 000000382 INF: Y Motor: Moving 1332 steps1
17-03-18 05:56:58.334 -07 000000012 INF: FPGA: Xmit ZDACW 30333\n [Z Motor]
17-03-18 05:56:58.334 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:56:58.344 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:56:58.344 -07 000000012 INF: FPGA: 'ZDACW 30333' command took 120 ms to send, 0 ms to get response, and 142 ms overall
17-03-18 05:56:58.354 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:56:58.364 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:56:58.364 -07 000000480 INF: FPGA: Recv ZDACR 30333
17-03-18 05:56:58.374 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:56:58.374 -07 000000012 INF: Z Motor: MoveAbsStepped took 172 ms (did NOT wait for settling yet))
17-03-18 05:56:58.394 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:56:58.394 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:56:58.394 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:58.404 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:56:58.404 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:56:58.404 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:56:58.404 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:56:58.404 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:56:58.404 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:56:58.414 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:56:58.544 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:56:58.544 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 342 ms overall
17-03-18 05:56:58.724 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:56:58.724 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:56:58.774 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:58.774 -07 000000625 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:56:58.784 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:58.784 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:58.784 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:56:58.784 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 517 ms, distance = 0.832 mm, average velocity = 1.610 mm/sec
17-03-18 05:56:59.734 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:56:59.734 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:56:59.744 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:56:59.744 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:56:59.774 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:56:59.774 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:56:59.774 -07 000000382 INF: Y Motor: Moved to 60.7324 after 1577 ms (table move)
17-03-18 05:56:59.774 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138856 mm (DAC = 30333)
17-03-18 05:56:59.774 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.784 -07 000000591 INF: FPGA: Recv ZSGSRD 30904
17-03-18 05:56:59.784 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:56:59.784 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.784 -07 000000012 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:56:59.794 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:56:59.794 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.794 -07 000000480 INF: FPGA: Recv ZSGSRD 30902
17-03-18 05:56:59.804 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.804 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30898
17-03-18 05:56:59.814 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.814 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.814 -07 000000480 INF: FPGA: Recv ZSGSRD 30899
17-03-18 05:56:59.824 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.824 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.824 -07 000000512 INF: FPGA: Recv ZSGSRD 30902
17-03-18 05:56:59.834 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.834 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.834 -07 000000480 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:56:59.844 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.844 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.844 -07 000000625 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:56:59.854 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.854 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.854 -07 000000480 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:56:59.864 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.864 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:56:59.864 -07 000000382 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:56:59.874 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.874 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:56:59.874 -07 000000012 INF: FPGA: Recv ZPIEZORD 26705
17-03-18 05:56:59.884 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.2 V.
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30904 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30898 (-138.0 uncal um), Max = 30912 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30904, posNoise = 8, negNoise = 6
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: After move to -0.138856, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: Settle wait time = 1580 ms, measure time = 103 ms (allowed 150 ms), total time = 1683 ms
17-03-18 05:56:59.884 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:56:59.934 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:56:59.934 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:56:59.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:56:59.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:56:59.934 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:56:59.934 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:56:59.934 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:56:59.934 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:56:59.944 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:56:59.944 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:56:59.944 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:56:59.944 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:56:59.954 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:56:59.954 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:56:59.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:00.004 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:00.304 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:00.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:00.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:00.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:00.344 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:00.344 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:00.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:57:00.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:57:00.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:00.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:00.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:57:00.444 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:00.444 -07 000000625 INF: Autofocus start
17-03-18 05:57:00.444 -07 000000625 INF: MeasureProfile start
17-03-18 05:57:00.444 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:00.454 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:00.454 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:00.454 -07 000000625 INF: MeasureProfile done
17-03-18 05:57:00.454 -07 000000625 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:57:00.454 -07 000000625 INF: Autofocus finished
17-03-18 05:57:00.654 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:00.654 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:57:00.654 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138857204040116. ----------
17-03-18 05:57:00.654 -07 000000610 INF: Cycle	143	Tile	2	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:00.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28874, sync = True, waitForSettling = True)
17-03-18 05:57:00.664 -07 000000610 INF: Z Motor: Moving to -0.132177 mm, started at -0.138857 mm, distance = 6.68 um
17-03-18 05:57:00.684 -07 000000610 INF: FPGA: Xmit ZDACW 28874\n [Z Motor]
17-03-18 05:57:00.684 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:57:00.694 -07 000000610 INF: FPGA: 'ZDACW 28874' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:57:00.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:00.694 -07 000000480 INF: FPGA: Recv ZDACR 28874
17-03-18 05:57:00.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:00.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.854 -07 000000382 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:57:00.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:00.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.864 -07 000000012 INF: FPGA: Recv ZSGSRD 29869
17-03-18 05:57:00.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.874 -07 000000512 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:57:00.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.884 -07 000000625 INF: FPGA: Recv ZSGSRD 29866
17-03-18 05:57:00.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.894 -07 000000561 INF: FPGA: Recv ZSGSRD 29869
17-03-18 05:57:00.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:57:00.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.914 -07 000000625 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:57:00.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.924 -07 000000012 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:57:00.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.934 -07 000000591 INF: FPGA: Recv ZSGSRD 29871
17-03-18 05:57:00.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:00.944 -07 000000382 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:57:00.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:00.954 -07 000000606 INF: FPGA: Recv ZPIEZORD 25332
17-03-18 05:57:00.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:00.964 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.9 V.
17-03-18 05:57:00.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29866 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29871 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:57:00.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29866, posNoise = 5, negNoise = 5
17-03-18 05:57:00.964 -07 000000610 INF: Z Motor: After move to -0.132177, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:00.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 05:57:00.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:00.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:00.964 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:00.964 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:00.964 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:00.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:00.964 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:00.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:00.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:00.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:00.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:00.964 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:00.974 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:00.974 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:00.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:00.974 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:00.984 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:57:00.984 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:57:00.984 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:57:00.984 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:57:00.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29051 150\n [Camera]
17-03-18 05:57:01.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:01.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:01.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:01.644 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:01.644 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:01.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:01.644 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:01.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:01.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:01.644 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:01.644 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:01.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:01.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:01.834 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29051 833
17-03-18 05:57:01.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:02.044 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:57:02.044 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:57:02.044 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:02.044 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:57:02.044 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:57:02.044 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:02.044 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:02.044 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:57:02.044 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:02.054 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:57:02.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:02.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:02.194 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:02.194 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:02.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:57:02.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:02.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:02.204 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:02.204 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:02.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:57:02.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:02.394 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:02.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29051 150' command took 2 ms to send, 1389 ms to get response, and 1398 ms overall
17-03-18 05:57:02.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:02.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132188871836968. ------
17-03-18 05:57:02.394 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:02.394 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13906 mm
17-03-18 05:57:02.394 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:02.394 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30377, sync = True, waitForSettling = False)
17-03-18 05:57:02.394 -07 000000591 INF: Z Motor: Moving to -0.139057 mm, started at -0.132189 mm, distance = -6.87 um
17-03-18 05:57:02.404 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:57:02.404 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:57:02.404 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:02.404 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:57:02.404 -07 000000591 INF: FPGA: Xmit ZDACW 30377\n [Z Motor]
17-03-18 05:57:02.404 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:57:02.414 -07 000000591 INF: FPGA: 'ZDACW 30377' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:02.414 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:02.414 -07 000000606 INF: FPGA: Recv ZDACR 30377
17-03-18 05:57:02.424 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:02.424 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:02.424 -07 000000591 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 05:57:02.424 -07 000000479 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:57:02.434 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:02.434 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:02.434 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:02.434 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:57:02.434 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:02.444 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:02.604 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:57:02.604 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:57:02.604 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:02.604 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:57:02.604 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:57:02.604 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:02.604 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:02.614 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:02.614 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:57:02.614 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:57:02.634 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:02.634 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 05:57:02.814 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 05:57:02.814 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:57:02.874 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:02.874 -07 000000382 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:57:02.884 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:02.884 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:02.884 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:57:02.884 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 05:57:03.404 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.971733,
17-03-18 05:57:03.834 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:03.834 -07 000000479 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:57:03.844 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:03.844 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:03.884 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:03.884 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:03.884 -07 000000012 INF: Y Motor: Moved to 61.5630 after 1484 ms (table move)
17-03-18 05:57:03.884 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139057 mm (DAC = 30377)
17-03-18 05:57:03.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.894 -07 000000479 INF: FPGA: Recv ZSGSRD 30933
17-03-18 05:57:03.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:57:03.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.894 -07 000000479 INF: FPGA: Recv ZSGSRD 30939
17-03-18 05:57:03.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:03.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.904 -07 000000591 INF: FPGA: Recv ZSGSRD 30926
17-03-18 05:57:03.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.914 -07 000000591 INF: FPGA: Recv ZSGSRD 30929
17-03-18 05:57:03.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.924 -07 000000012 INF: FPGA: Recv ZSGSRD 30935
17-03-18 05:57:03.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.934 -07 000000012 INF: FPGA: Recv ZSGSRD 30937
17-03-18 05:57:03.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.944 -07 000000012 INF: FPGA: Recv ZSGSRD 30940
17-03-18 05:57:03.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.954 -07 000000479 INF: FPGA: Recv ZSGSRD 30944
17-03-18 05:57:03.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.964 -07 000000012 INF: FPGA: Recv ZSGSRD 30935
17-03-18 05:57:03.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.974 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:03.974 -07 000000444 INF: FPGA: Recv ZSGSRD 30936
17-03-18 05:57:03.984 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.984 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:03.984 -07 000000012 INF: FPGA: Recv ZPIEZORD 26800
17-03-18 05:57:03.994 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.635 V. Piezo Error = -9.1 V.
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30935 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30936 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30926 (-138.2 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30935, posNoise = 9, negNoise = 9
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: After move to -0.139057, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: Settle wait time = 1489 ms, measure time = 101 ms (allowed 150 ms), total time = 1590 ms
17-03-18 05:57:03.994 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:04.044 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1643 ms
17-03-18 05:57:04.044 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:04.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:04.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:04.044 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:04.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:04.044 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:04.044 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:04.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:57:04.044 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:04.054 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:04.054 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:04.054 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:57:04.054 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:57:04.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:04.104 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:04.404 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:04.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:04.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:04.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:57:04.444 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:04.444 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:04.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:57:04.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:57:04.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:04.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:04.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:57:04.544 -07 000000480 INF: Autofocus start
17-03-18 05:57:04.544 -07 000000480 INF: MeasureProfile start
17-03-18 05:57:04.544 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:04.544 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:04.554 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:04.554 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:04.554 -07 000000480 INF: MeasureProfile done
17-03-18 05:57:04.554 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:57:04.554 -07 000000480 INF: Autofocus finished
17-03-18 05:57:04.754 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:04.754 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:04.754 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.13905635461651. ----------
17-03-18 05:57:04.754 -07 000000610 INF: Cycle	143	Tile	3	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:04.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28884, sync = True, waitForSettling = True)
17-03-18 05:57:04.764 -07 000000610 INF: Z Motor: Moving to -0.132222 mm, started at -0.139056 mm, distance = 6.83 um
17-03-18 05:57:04.764 -07 000000610 INF: FPGA: Xmit ZDACW 28884\n [Z Motor]
17-03-18 05:57:04.764 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:57:04.774 -07 000000610 INF: FPGA: 'ZDACW 28884' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:04.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:04.774 -07 000000479 INF: FPGA: Recv ZDACR 28884
17-03-18 05:57:04.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:04.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:57:04.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.944 -07 000000591 INF: FPGA: Recv ZSGSRD 29872
17-03-18 05:57:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29875
17-03-18 05:57:04.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.964 -07 000000591 INF: FPGA: Recv ZSGSRD 29880
17-03-18 05:57:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.974 -07 000000444 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:57:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.984 -07 000000487 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:57:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:04.994 -07 000000444 INF: FPGA: Recv ZSGSRD 29876
17-03-18 05:57:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:05.004 -07 000000487 INF: FPGA: Recv ZSGSRD 29872
17-03-18 05:57:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:05.014 -07 000000591 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:57:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:05.024 -07 000000561 INF: FPGA: Recv ZSGSRD 29872
17-03-18 05:57:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:05.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:05.034 -07 000000480 INF: FPGA: Recv ZPIEZORD 25395
17-03-18 05:57:05.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:05.044 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.8 V.
17-03-18 05:57:05.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29872 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29872 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29867 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:57:05.044 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29872, posNoise = 8, negNoise = 5
17-03-18 05:57:05.044 -07 000000610 INF: Z Motor: After move to -0.132222, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:05.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:57:05.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:05.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:05.044 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:05.044 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:05.044 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:05.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:05.044 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:05.044 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:05.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:05.044 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:05.044 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:05.044 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:05.054 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:05.054 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:05.054 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:05.054 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:05.054 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:05.064 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:05.064 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:05.064 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:05.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29061 150\n [Camera]
17-03-18 05:57:05.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:05.714 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:05.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:05.714 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:05.714 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:05.714 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:57:05.714 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:05.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:05.714 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:05.714 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:05.714 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:57:05.904 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29061 833
17-03-18 05:57:06.054 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:06.114 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:57:06.114 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:06.114 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:06.114 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:06.114 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:57:06.114 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:57:06.114 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:57:06.114 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:06.124 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:06.124 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:57:06.274 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:06.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:06.274 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:06.274 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:06.274 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:57:06.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:06.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:06.274 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:06.274 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:06.274 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:57:06.464 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:06.464 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:06.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29061 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-18 05:57:06.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:06.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132227417109818. ------
17-03-18 05:57:06.464 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:06.464 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13871 mm
17-03-18 05:57:06.464 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:06.474 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:06.474 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:06.474 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:06.474 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:57:06.474 -07 000000625 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:57:06.474 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30301, sync = True, waitForSettling = False)
17-03-18 05:57:06.474 -07 000000382 INF: Z Motor: Moving to -0.138709 mm, started at -0.132227 mm, distance = -6.48 um
17-03-18 05:57:06.484 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:06.484 -07 000000479 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:57:06.494 -07 000000382 INF: FPGA: Xmit ZDACW 30301\n [Z Motor]
17-03-18 05:57:06.494 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:57:06.494 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:06.494 -07 000000625 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:06.494 -07 000000625 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:57:06.494 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:57:06.504 -07 000000382 INF: FPGA: 'ZDACW 30301' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:57:06.504 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:06.504 -07 000000611 INF: FPGA: Recv ZDACR 30301
17-03-18 05:57:06.514 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:06.514 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:06.514 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:57:06.674 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:06.674 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:57:06.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:57:06.674 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:57:06.674 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:06.674 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:57:06.674 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:57:06.674 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:06.684 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:06.684 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:06.684 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:57:06.684 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:57:06.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:06.884 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:57:06.884 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:57:06.934 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:06.944 -07 000000479 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:57:06.944 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:06.944 -07 000000625 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:06.944 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:57:06.944 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:57:07.894 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:07.894 -07 000000581 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:57:07.904 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:07.904 -07 000000625 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:07.934 -07 000000625 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:07.934 -07 000000625 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:57:07.934 -07 000000625 INF: Y Motor: Moved to 62.3950 after 1459 ms (table move)
17-03-18 05:57:07.934 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138709 mm (DAC = 30301)
17-03-18 05:57:07.934 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.934 -07 000000611 INF: FPGA: Recv ZSGSRD 30891
17-03-18 05:57:07.944 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:07.944 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.944 -07 000000437 INF: FPGA: Recv ZSGSRD 30888
17-03-18 05:57:07.954 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:07.954 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.954 -07 000000444 INF: FPGA: Recv ZSGSRD 30884
17-03-18 05:57:07.964 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:07.964 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.964 -07 000000480 INF: FPGA: Recv ZSGSRD 30882
17-03-18 05:57:07.974 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:07.974 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.974 -07 000000437 INF: FPGA: Recv ZSGSRD 30878
17-03-18 05:57:07.984 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:07.984 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.984 -07 000000487 INF: FPGA: Recv ZSGSRD 30879
17-03-18 05:57:07.994 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:07.994 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:07.994 -07 000000479 INF: FPGA: Recv ZSGSRD 30890
17-03-18 05:57:08.004 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.004 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:08.004 -07 000000611 INF: FPGA: Recv ZSGSRD 30886
17-03-18 05:57:08.014 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:08.014 -07 000000581 INF: FPGA: Recv ZSGSRD 30878
17-03-18 05:57:08.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:08.024 -07 000000382 INF: FPGA: Recv ZSGSRD 30885
17-03-18 05:57:08.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.034 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:08.034 -07 000000479 INF: FPGA: Recv ZPIEZORD 26741
17-03-18 05:57:08.044 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.1 V.
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30884 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30884 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30878 (-137.9 uncal um), Max = 30891 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30884, posNoise = 7, negNoise = 6
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: After move to -0.138709, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:57:08.044 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:08.094 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:57:08.094 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:08.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:08.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:08.094 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:08.094 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:08.094 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:08.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:08.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:08.094 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:08.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:08.104 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:08.104 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:57:08.104 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:57:08.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:08.164 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:57:08.464 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:57:08.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:57:08.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:08.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 05:57:08.494 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:08.504 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:08.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 05:57:08.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:57:08.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:08.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:57:08.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:57:08.604 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:08.604 -07 000000012 INF: Autofocus start
17-03-18 05:57:08.604 -07 000000012 INF: MeasureProfile start
17-03-18 05:57:08.604 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:08.614 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:57:08.614 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:08.614 -07 000000012 INF: MeasureProfile done
17-03-18 05:57:08.614 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:57:08.614 -07 000000012 INF: Autofocus finished
17-03-18 05:57:08.764 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.983999,
17-03-18 05:57:08.814 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:08.814 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:08.814 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.13872871979728. ----------
17-03-18 05:57:08.814 -07 000000610 INF: Cycle	143	Tile	4	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:08.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28796, sync = True, waitForSettling = True)
17-03-18 05:57:08.824 -07 000000610 INF: Z Motor: Moving to -0.131820 mm, started at -0.138729 mm, distance = 6.91 um
17-03-18 05:57:08.824 -07 000000610 INF: FPGA: Xmit ZDACW 28796\n [Z Motor]
17-03-18 05:57:08.824 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:57:08.834 -07 000000610 INF: FPGA: 'ZDACW 28796' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:08.834 -07 000000462 INF: FPGA: Recv ZDACR 28796
17-03-18 05:57:08.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:08.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:08.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:08.994 -07 000000444 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:57:09.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:09.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.004 -07 000000437 INF: FPGA: Recv ZSGSRD 29814
17-03-18 05:57:09.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.014 -07 000000455 INF: FPGA: Recv ZSGSRD 29809
17-03-18 05:57:09.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.024 -07 000000462 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:57:09.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.034 -07 000000012 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:57:09.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.044 -07 000000561 INF: FPGA: Recv ZSGSRD 29811
17-03-18 05:57:09.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:09.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.054 -07 000000611 INF: FPGA: Recv ZSGSRD 29807
17-03-18 05:57:09.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.064 -07 000000487 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:57:09.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.074 -07 000000437 INF: FPGA: Recv ZSGSRD 29809
17-03-18 05:57:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:09.084 -07 000000444 INF: FPGA: Recv ZSGSRD 29815
17-03-18 05:57:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:09.094 -07 000000462 INF: FPGA: Recv ZPIEZORD 25314
17-03-18 05:57:09.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:09.104 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V.
17-03-18 05:57:09.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29809 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29803 (-131.0 uncal um), Max = 29815 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:57:09.104 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29809, posNoise = 6, negNoise = 6
17-03-18 05:57:09.104 -07 000000610 INF: Z Motor: After move to -0.131820, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:09.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 05:57:09.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:09.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:09.114 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:09.114 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:09.114 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:09.114 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:09.114 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:09.114 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:09.114 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:09.114 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:09.114 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:09.114 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:09.124 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:57:09.124 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:57:09.124 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:09.124 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:09.134 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:57:09.134 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:57:09.134 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:57:09.134 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:57:09.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28973 150\n [Camera]
17-03-18 05:57:09.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:09.784 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:09.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:09.784 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:09.784 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:09.784 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:57:09.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:09.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:09.794 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:09.794 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:09.794 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:57:09.984 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28973 833
17-03-18 05:57:10.124 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:10.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:57:10.184 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:10.184 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:10.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:57:10.184 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:57:10.184 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:10.194 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:10.194 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:57:10.194 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:10.194 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:57:10.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:10.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:10.344 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:10.344 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:10.344 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:57:10.344 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:10.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:10.344 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:10.344 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:10.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:57:10.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:10.534 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:10.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28973 150' command took 2 ms to send, 1387 ms to get response, and 1398 ms overall
17-03-18 05:57:10.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:10.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131822691744887. ------
17-03-18 05:57:10.544 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:10.544 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13853 mm
17-03-18 05:57:10.544 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:10.544 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:10.544 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:57:10.544 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:57:10.544 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = False)
17-03-18 05:57:10.544 -07 000000462 INF: Z Motor: Moving to -0.138531 mm, started at -0.131823 mm, distance = -6.71 um
17-03-18 05:57:10.554 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:57:10.554 -07 000000462 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-18 05:57:10.554 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:57:10.564 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:10.564 -07 000000462 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:57:10.564 -07 000000591 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:57:10.574 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:57:10.574 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:10.574 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:10.574 -07 000000581 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:57:10.574 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:10.584 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:10.584 -07 000000382 INF: FPGA: Recv ZDACR 30262
17-03-18 05:57:10.594 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:10.594 -07 000000462 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:57:10.594 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:10.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:57:10.744 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:57:10.744 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:10.744 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:57:10.744 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:10.744 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:10.744 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:10.754 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:57:10.754 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:57:10.754 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:57:10.774 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:10.774 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:57:10.964 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:57:10.964 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 05:57:11.024 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:11.024 -07 000000479 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:57:11.034 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:11.034 -07 000000581 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:11.034 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:57:11.034 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 05:57:11.814 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:11.984 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:11.984 -07 000000382 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:57:11.994 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:11.994 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:12.024 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:12.024 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:57:12.024 -07 000000581 INF: Y Motor: Moved to 63.2231 after 1474 ms (table move)
17-03-18 05:57:12.024 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138531 mm (DAC = 30262)
17-03-18 05:57:12.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.024 -07 000000382 INF: FPGA: Recv ZSGSRD 30863
17-03-18 05:57:12.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:12.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.034 -07 000000512 INF: FPGA: Recv ZSGSRD 30861
17-03-18 05:57:12.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:12.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.044 -07 000000591 INF: FPGA: Recv ZSGSRD 30849
17-03-18 05:57:12.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.054 -07 000000561 INF: FPGA: Recv ZSGSRD 30848
17-03-18 05:57:12.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.064 -07 000000382 INF: FPGA: Recv ZSGSRD 30851
17-03-18 05:57:12.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.074 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30852
17-03-18 05:57:12.084 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.084 -07 000000591 INF: FPGA: Recv ZSGSRD 30855
17-03-18 05:57:12.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.094 -07 000000479 INF: FPGA: Recv ZSGSRD 30858
17-03-18 05:57:12.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.104 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.104 -07 000000581 INF: FPGA: Recv ZSGSRD 30865
17-03-18 05:57:12.114 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.114 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:12.114 -07 000000512 INF: FPGA: Recv ZSGSRD 30852
17-03-18 05:57:12.124 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.124 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:12.124 -07 000000382 INF: FPGA: Recv ZPIEZORD 26687
17-03-18 05:57:12.134 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.2 V.
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30855 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30848 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30855, posNoise = 10, negNoise = 7
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: After move to -0.138531, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: Settle wait time = 1477 ms, measure time = 105 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:57:12.134 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:12.184 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 05:57:12.184 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:12.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:12.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:12.184 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:12.184 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:12.184 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:12.184 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:12.184 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:12.184 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:12.194 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:12.194 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:12.204 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:57:12.204 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:57:12.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:12.244 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:12.544 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:12.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:12.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:12.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:57:12.584 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:12.584 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:12.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:57:12.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:57:12.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:12.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:57:12.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:57:12.684 -07 000000012 INF: Autofocus start
17-03-18 05:57:12.684 -07 000000012 INF: MeasureProfile start
17-03-18 05:57:12.684 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:12.694 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:12.694 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:12.694 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:12.704 -07 000000012 INF: MeasureProfile done
17-03-18 05:57:12.704 -07 000000012 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 05:57:12.704 -07 000000012 INF: Autofocus finished
17-03-18 05:57:12.894 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:12.894 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:12.894 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138542417645169. ----------
17-03-18 05:57:12.894 -07 000000610 INF: Cycle	143	Tile	5	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:12.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28672, sync = True, waitForSettling = True)
17-03-18 05:57:12.904 -07 000000610 INF: Z Motor: Moving to -0.131252 mm, started at -0.138542 mm, distance = 7.29 um
17-03-18 05:57:12.904 -07 000000610 INF: FPGA: Xmit ZDACW 28672\n [Z Motor]
17-03-18 05:57:12.904 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:57:12.914 -07 000000610 INF: FPGA: 'ZDACW 28672' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:12.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:12.914 -07 000000512 INF: FPGA: Recv ZDACR 28672
17-03-18 05:57:12.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:12.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:13.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.074 -07 000000012 INF: FPGA: Recv ZSGSRD 29718
17-03-18 05:57:13.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:13.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.084 -07 000000581 INF: FPGA: Recv ZSGSRD 29717
17-03-18 05:57:13.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.094 -07 000000479 INF: FPGA: Recv ZSGSRD 29725
17-03-18 05:57:13.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.104 -07 000000561 INF: FPGA: Recv ZSGSRD 29719
17-03-18 05:57:13.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29721
17-03-18 05:57:13.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.124 -07 000000382 INF: FPGA: Recv ZSGSRD 29722
17-03-18 05:57:13.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.134 -07 000000591 INF: FPGA: Recv ZSGSRD 29717
17-03-18 05:57:13.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.144 -07 000000437 INF: FPGA: Recv ZSGSRD 29720
17-03-18 05:57:13.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29713
17-03-18 05:57:13.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:13.164 -07 000000382 INF: FPGA: Recv ZSGSRD 29723
17-03-18 05:57:13.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:13.174 -07 000000479 INF: FPGA: Recv ZPIEZORD 25214
17-03-18 05:57:13.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:13.184 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.9 V.
17-03-18 05:57:13.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29720 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29720 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29713 (-130.4 uncal um), Max = 29725 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:13.184 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29720, posNoise = 5, negNoise = 7
17-03-18 05:57:13.184 -07 000000610 INF: Z Motor: After move to -0.131252, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:13.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 05:57:13.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:13.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:13.194 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:13.194 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:13.194 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:13.194 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:13.194 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:13.194 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:13.194 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:13.194 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:13.194 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:13.194 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:13.194 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:13.194 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:13.194 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:13.194 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:13.204 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:13.204 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:13.204 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:13.204 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:13.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28849 150\n [Camera]
17-03-18 05:57:13.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:13.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:13.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:13.854 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:13.854 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:13.854 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:57:13.864 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:13.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:13.864 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:13.864 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:13.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:57:14.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28849 833
17-03-18 05:57:14.124 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.963579,
17-03-18 05:57:14.194 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:14.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:57:14.234 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:57:14.234 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:14.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:57:14.234 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:57:14.234 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:14.244 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:14.244 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:57:14.244 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:14.244 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:57:14.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:14.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:14.414 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:14.414 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:14.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:57:14.424 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:14.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:14.424 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:14.424 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:14.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:57:14.604 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:14.604 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:14.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28849 150' command took 2 ms to send, 1387 ms to get response, and 1398 ms overall
17-03-18 05:57:14.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:14.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131250936864271. ------
17-03-18 05:57:14.614 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13766 mm
17-03-18 05:57:14.614 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:14.614 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:14.614 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:57:14.614 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30072, sync = True, waitForSettling = False)
17-03-18 05:57:14.614 -07 000000611 INF: Z Motor: Moving to -0.137661 mm, started at -0.131251 mm, distance = -6.41 um
17-03-18 05:57:14.614 -07 000000012 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:57:14.624 -07 000000611 INF: FPGA: Xmit ZDACW 30072\n [Z Motor]
17-03-18 05:57:14.624 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:14.624 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:14.624 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:57:14.634 -07 000000611 INF: FPGA: 'ZDACW 30072' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:14.634 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:14.644 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:14.644 -07 000000625 INF: FPGA: Recv YRDPOS 129482
17-03-18 05:57:14.654 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:14.654 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:57:14.654 -07 000000012 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:14.654 -07 000000382 INF: FPGA: Recv ZDACR 30072
17-03-18 05:57:14.654 -07 000000012 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:14.654 -07 000000012 INF: Y Motor: Moving 1342 steps-20
17-03-18 05:57:14.664 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:14.664 -07 000000611 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:57:14.664 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:14.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:57:14.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:57:14.814 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:14.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:57:14.824 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:57:14.824 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:14.824 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:14.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:14.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:57:14.834 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:57:14.834 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:14.834 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 05:57:15.034 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 05:57:15.034 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:57:15.084 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:15.094 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:57:15.094 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:15.094 -07 000000012 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:15.094 -07 000000012 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:57:15.094 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-18 05:57:16.044 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:16.044 -07 000000479 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:57:16.054 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.054 -07 000000012 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:16.084 -07 000000012 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:16.084 -07 000000012 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:16.084 -07 000000012 INF: Y Motor: Moved to 64.0562 after 1462 ms (table move)
17-03-18 05:57:16.084 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137661 mm (DAC = 30072)
17-03-18 05:57:16.084 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.084 -07 000000591 INF: FPGA: Recv ZSGSRD 30721
17-03-18 05:57:16.094 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:57:16.094 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.094 -07 000000480 INF: FPGA: Recv ZSGSRD 30716
17-03-18 05:57:16.104 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.104 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.104 -07 000000561 INF: FPGA: Recv ZSGSRD 30716
17-03-18 05:57:16.114 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.114 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.114 -07 000000462 INF: FPGA: Recv ZSGSRD 30719
17-03-18 05:57:16.124 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.124 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.124 -07 000000608 INF: FPGA: Recv ZSGSRD 30717
17-03-18 05:57:16.134 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.134 -07 000000480 INF: FPGA: Recv ZSGSRD 30716
17-03-18 05:57:16.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.144 -07 000000608 INF: FPGA: Recv ZSGSRD 30718
17-03-18 05:57:16.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.154 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.154 -07 000000462 INF: FPGA: Recv ZSGSRD 30723
17-03-18 05:57:16.164 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.164 -07 000000608 INF: FPGA: Recv ZSGSRD 30725
17-03-18 05:57:16.174 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.174 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:16.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30720
17-03-18 05:57:16.184 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.184 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:16.184 -07 000000382 INF: FPGA: Recv ZPIEZORD 26572
17-03-18 05:57:16.194 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.1 V.
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30719 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30718 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30716 (-136.9 uncal um), Max = 30725 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30719, posNoise = 6, negNoise = 3
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: After move to -0.137661, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:57:16.194 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:16.244 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:57:16.244 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:16.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:16.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:16.244 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:16.244 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:16.244 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:16.244 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:16.244 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:16.244 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:16.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:16.254 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:16.254 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:57:16.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:57:16.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:16.304 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:16.604 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:16.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:16.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:16.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 05:57:16.644 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:16.644 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:16.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:57:16.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:57:16.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:16.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:57:16.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:57:16.744 -07 000000480 INF: Autofocus start
17-03-18 05:57:16.744 -07 000000480 INF: MeasureProfile start
17-03-18 05:57:16.754 -07 000000480 INF: MeasureProfile done
17-03-18 05:57:16.754 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:57:16.754 -07 000000480 INF: Autofocus finished
17-03-18 05:57:16.764 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:16.764 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:16.774 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:57:16.774 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:16.814 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:16.974 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:16.974 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:16.974 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.13766872479389. ----------
17-03-18 05:57:16.974 -07 000000610 INF: Cycle	143	Tile	6	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:16.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28613, sync = True, waitForSettling = True)
17-03-18 05:57:16.984 -07 000000610 INF: Z Motor: Moving to -0.130982 mm, started at -0.137669 mm, distance = 6.69 um
17-03-18 05:57:16.984 -07 000000610 INF: FPGA: Xmit ZDACW 28613\n [Z Motor]
17-03-18 05:57:16.984 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:57:16.994 -07 000000610 INF: FPGA: 'ZDACW 28613' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:16.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:16.994 -07 000000581 INF: FPGA: Recv ZDACR 28613
17-03-18 05:57:17.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:17.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.154 -07 000000608 INF: FPGA: Recv ZSGSRD 29681
17-03-18 05:57:17.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:17.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.164 -07 000000608 INF: FPGA: Recv ZSGSRD 29686
17-03-18 05:57:17.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:57:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.184 -07 000000608 INF: FPGA: Recv ZSGSRD 29675
17-03-18 05:57:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:57:17.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29682
17-03-18 05:57:17.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.214 -07 000000480 INF: FPGA: Recv ZSGSRD 29677
17-03-18 05:57:17.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.224 -07 000000480 INF: FPGA: Recv ZSGSRD 29673
17-03-18 05:57:17.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.234 -07 000000561 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:57:17.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:17.244 -07 000000581 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:57:17.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:17.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:17.254 -07 000000480 INF: FPGA: Recv ZPIEZORD 25197
17-03-18 05:57:17.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:17.264 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-18 05:57:17.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29679 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29673 (-130.2 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:57:17.264 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29679, posNoise = 7, negNoise = 6
17-03-18 05:57:17.264 -07 000000610 INF: Z Motor: After move to -0.130982, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:17.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:57:17.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:17.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:17.264 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:17.264 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:17.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:17.264 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:17.264 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:17.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:17.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:17.264 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:17.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:17.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:17.274 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:17.274 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:17.274 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:57:17.274 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:17.284 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:57:17.284 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:57:17.284 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:57:17.284 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:57:17.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28789 150\n [Camera]
17-03-18 05:57:17.494 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:17.944 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:17.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:17.944 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:17.944 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:17.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:57:17.944 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:17.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:17.944 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:17.944 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:17.944 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:57:18.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28789 833
17-03-18 05:57:18.284 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:18.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:57:18.344 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:57:18.344 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:18.344 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:18.344 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:57:18.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:57:18.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:57:18.344 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:18.354 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:18.354 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:57:18.494 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:18.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:18.504 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:18.504 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:18.504 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:57:18.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:18.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:18.504 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:18.504 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:18.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 05:57:18.694 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:18.694 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:18.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28789 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-18 05:57:18.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:18.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130987544166458. ------
17-03-18 05:57:18.694 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:18.694 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13755 mm
17-03-18 05:57:18.694 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:18.694 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:57:18.694 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30047, sync = True, waitForSettling = False)
17-03-18 05:57:18.694 -07 000000382 INF: Z Motor: Moving to -0.137546 mm, started at -0.130988 mm, distance = -6.56 um
17-03-18 05:57:18.694 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:18.704 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:18.704 -07 000000479 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:57:18.704 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:18.704 -07 000000591 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:57:18.714 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:18.714 -07 000000479 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:18.714 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:18.714 -07 000000479 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:18.714 -07 000000479 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:57:18.724 -07 000000382 INF: FPGA: Xmit ZDACW 30047\n [Z Motor]
17-03-18 05:57:18.724 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:57:18.734 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:18.734 -07 000000382 INF: FPGA: 'ZDACW 30047' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:57:18.744 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:18.744 -07 000000462 INF: FPGA: Recv ZDACR 30047
17-03-18 05:57:18.754 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:18.754 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:57:18.914 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:18.914 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:57:18.914 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 415 ms.
17-03-18 05:57:18.914 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 05:57:18.914 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:18.924 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:57:18.924 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-18 05:57:19.044 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:57:19.044 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 539 ms.
17-03-18 05:57:19.044 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:19.044 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:57:19.054 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 548 ms.
17-03-18 05:57:19.104 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:57:19.104 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 05:57:19.154 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:19.164 -07 000000561 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:57:19.164 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:57:19.164 -07 000000479 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:19.164 -07 000000479 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:57:19.164 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.836 mm, average velocity = 2.145 mm/sec
17-03-18 05:57:19.484 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.997626,
17-03-18 05:57:20.114 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:20.114 -07 000000444 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:57:20.124 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:20.124 -07 000000479 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:20.154 -07 000000479 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:20.154 -07 000000479 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:57:20.154 -07 000000479 INF: Y Motor: Moved to 64.8784 after 1454 ms (table move)
17-03-18 05:57:20.154 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137546 mm (DAC = 30047)
17-03-18 05:57:20.154 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.154 -07 000000479 INF: FPGA: Recv ZSGSRD 30698
17-03-18 05:57:20.164 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:20.164 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.164 -07 000000444 INF: FPGA: Recv ZSGSRD 30701
17-03-18 05:57:20.174 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.174 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.174 -07 000000591 INF: FPGA: Recv ZSGSRD 30700
17-03-18 05:57:20.184 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.184 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.184 -07 000000462 INF: FPGA: Recv ZSGSRD 30705
17-03-18 05:57:20.194 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.194 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.194 -07 000000462 INF: FPGA: Recv ZSGSRD 30701
17-03-18 05:57:20.204 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.204 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.204 -07 000000444 INF: FPGA: Recv ZSGSRD 30702
17-03-18 05:57:20.214 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.214 -07 000000581 INF: FPGA: Recv ZSGSRD 30691
17-03-18 05:57:20.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.224 -07 000000581 INF: FPGA: Recv ZSGSRD 30697
17-03-18 05:57:20.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.234 -07 000000581 INF: FPGA: Recv ZSGSRD 30710
17-03-18 05:57:20.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:20.244 -07 000000581 INF: FPGA: Recv ZSGSRD 30702
17-03-18 05:57:20.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.254 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:20.254 -07 000000581 INF: FPGA: Recv ZPIEZORD 26550
17-03-18 05:57:20.264 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.1 V.
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30701 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30701 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30710 (-136.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30701, posNoise = 9, negNoise = 10
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: After move to -0.137546, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:57:20.264 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:20.314 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:57:20.314 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:20.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:20.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:20.314 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:20.314 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:20.314 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:20.314 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:20.314 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:20.314 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:20.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:20.324 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:20.334 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:57:20.334 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 05:57:20.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:20.384 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:20.684 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:20.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:20.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:20.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:20.724 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:20.724 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:20.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:57:20.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:57:20.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:20.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:20.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:57:20.824 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:20.824 -07 000000591 INF: Autofocus start
17-03-18 05:57:20.824 -07 000000591 INF: MeasureProfile start
17-03-18 05:57:20.824 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:20.834 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:20.834 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:20.834 -07 000000591 INF: MeasureProfile done
17-03-18 05:57:20.834 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:57:20.834 -07 000000591 INF: Autofocus finished
17-03-18 05:57:21.034 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:21.034 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:21.034 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137553088975338. ----------
17-03-18 05:57:21.034 -07 000000610 INF: Cycle	143	Tile	7	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:21.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28571, sync = True, waitForSettling = True)
17-03-18 05:57:21.044 -07 000000610 INF: Z Motor: Moving to -0.130790 mm, started at -0.137553 mm, distance = 6.76 um
17-03-18 05:57:21.044 -07 000000610 INF: FPGA: Xmit ZDACW 28571\n [Z Motor]
17-03-18 05:57:21.044 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:57:21.054 -07 000000610 INF: FPGA: 'ZDACW 28571' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:21.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:21.054 -07 000000561 INF: FPGA: Recv ZDACR 28571
17-03-18 05:57:21.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:21.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29648
17-03-18 05:57:21.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.224 -07 000000608 INF: FPGA: Recv ZSGSRD 29643
17-03-18 05:57:21.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.234 -07 000000561 INF: FPGA: Recv ZSGSRD 29651
17-03-18 05:57:21.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.244 -07 000000591 INF: FPGA: Recv ZSGSRD 29647
17-03-18 05:57:21.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.254 -07 000000012 INF: FPGA: Recv ZSGSRD 29651
17-03-18 05:57:21.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.264 -07 000000561 INF: FPGA: Recv ZSGSRD 29650
17-03-18 05:57:21.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.274 -07 000000012 INF: FPGA: Recv ZSGSRD 29649
17-03-18 05:57:21.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.284 -07 000000561 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:57:21.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29646
17-03-18 05:57:21.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:21.304 -07 000000561 INF: FPGA: Recv ZSGSRD 29646
17-03-18 05:57:21.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:21.314 -07 000000012 INF: FPGA: Recv ZPIEZORD 25157
17-03-18 05:57:21.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:21.324 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.9 V.
17-03-18 05:57:21.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29648 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29648 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29643 (-130.0 uncal um), Max = 29654 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:57:21.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29648, posNoise = 6, negNoise = 5
17-03-18 05:57:21.324 -07 000000610 INF: Z Motor: After move to -0.130790, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:21.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:57:21.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:21.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:21.324 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:21.324 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:21.324 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:21.324 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:21.324 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:21.324 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:21.324 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:21.324 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:21.324 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:21.324 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:21.334 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:21.334 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:21.334 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:21.334 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:21.334 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:21.334 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:21.344 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:57:21.344 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:21.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28748 150\n [Camera]
17-03-18 05:57:21.544 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:21.814 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:21.994 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:21.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:21.994 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:21.994 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:21.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:21.994 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:21.994 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:21.994 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:22.004 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:22.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:57:22.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28748 833
17-03-18 05:57:22.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:22.374 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:57:22.374 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:57:22.374 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:22.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:57:22.374 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 05:57:22.374 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:22.374 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:57:22.374 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:57:22.374 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:22.384 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:57:22.544 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:22.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:22.544 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:22.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:22.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:22.554 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:22.674 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:22.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:57:22.674 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:22.674 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:57:22.734 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:57:22.744 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:22.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28748 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:57:22.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:22.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130788393590064. ------
17-03-18 05:57:22.744 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:22.744 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13740 mm
17-03-18 05:57:22.744 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:22.744 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:57:22.744 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:57:22.744 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30015, sync = True, waitForSettling = False)
17-03-18 05:57:22.744 -07 000000561 INF: Z Motor: Moving to -0.137400 mm, started at -0.130788 mm, distance = -6.61 um
17-03-18 05:57:22.744 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:22.754 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:22.754 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:22.754 -07 000000606 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:57:22.764 -07 000000561 INF: FPGA: Xmit ZDACW 30015\n [Z Motor]
17-03-18 05:57:22.764 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:57:22.764 -07 000000480 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:22.764 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:22.764 -07 000000480 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:57:22.764 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:57:22.774 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:22.774 -07 000000561 INF: FPGA: 'ZDACW 30015' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:57:22.784 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:22.794 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:22.794 -07 000000444 INF: FPGA: Recv ZDACR 30015
17-03-18 05:57:22.804 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:22.804 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:57:22.974 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:22.974 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:57:23.074 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:57:23.074 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:57:23.074 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:23.074 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:57:23.074 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:57:23.074 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:23.084 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:23.084 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:23.084 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 05:57:23.084 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 05:57:23.154 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:57:23.154 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:57:23.204 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:23.214 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:57:23.224 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:23.224 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:23.224 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:57:23.224 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:57:24.174 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:24.174 -07 000000581 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:57:24.184 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:24.184 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:24.214 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:24.214 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:24.214 -07 000000480 INF: Y Motor: Moved to 65.7134 after 1470 ms (table move)
17-03-18 05:57:24.224 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137400 mm (DAC = 30015)
17-03-18 05:57:24.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.224 -07 000000480 INF: FPGA: Recv ZSGSRD 30695
17-03-18 05:57:24.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:24.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30679
17-03-18 05:57:24.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.244 -07 000000480 INF: FPGA: Recv ZSGSRD 30672
17-03-18 05:57:24.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.254 -07 000000480 INF: FPGA: Recv ZSGSRD 30676
17-03-18 05:57:24.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.264 -07 000000480 INF: FPGA: Recv ZSGSRD 30670
17-03-18 05:57:24.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.274 -07 000000480 INF: FPGA: Recv ZSGSRD 30680
17-03-18 05:57:24.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.284 -07 000000479 INF: FPGA: Recv ZSGSRD 30682
17-03-18 05:57:24.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.294 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.294 -07 000000479 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:57:24.304 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.304 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30676
17-03-18 05:57:24.314 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.314 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:24.314 -07 000000382 INF: FPGA: Recv ZSGSRD 30679
17-03-18 05:57:24.324 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.324 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:24.324 -07 000000382 INF: FPGA: Recv ZPIEZORD 26463
17-03-18 05:57:24.334 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.3 V.
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30678 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30678 (-136.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30670 (-136.6 uncal um), Max = 30695 (-136.7 uncal um), Pos Noise = 17 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: ADC noise = 17, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30678, posNoise = 17, negNoise = 8
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: After move to -0.137400, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: Settle wait time = 1473 ms, measure time = 109 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:57:24.334 -07 000000608 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:24.384 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 05:57:24.384 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:24.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:24.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:24.384 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:24.384 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:24.384 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:24.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:24.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:24.394 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:24.394 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:24.394 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:24.404 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:57:24.404 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:57:24.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:24.454 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:24.754 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:24.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:24.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:24.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:24.794 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:24.794 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:24.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:57:24.844 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.004458,
17-03-18 05:57:24.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:57:24.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:24.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:24.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:57:24.894 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:24.894 -07 000000479 INF: Autofocus start
17-03-18 05:57:24.894 -07 000000479 INF: MeasureProfile start
17-03-18 05:57:24.894 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:24.904 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:24.904 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:24.904 -07 000000479 INF: MeasureProfile done
17-03-18 05:57:24.904 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:57:24.904 -07 000000479 INF: Autofocus finished
17-03-18 05:57:25.104 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:25.104 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:25.104 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137405332096078. ----------
17-03-18 05:57:25.104 -07 000000610 INF: Cycle	143	Tile	8	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:25.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-18 05:57:25.114 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.137405 mm, distance = 6.84 um
17-03-18 05:57:25.114 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-18 05:57:25.114 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 05:57:25.124 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:25.124 -07 000000382 INF: FPGA: Recv ZDACR 28522
17-03-18 05:57:25.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:25.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.284 -07 000000444 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:57:25.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.294 -07 000000012 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:57:25.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.304 -07 000000444 INF: FPGA: Recv ZSGSRD 29611
17-03-18 05:57:25.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:57:25.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29617
17-03-18 05:57:25.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.334 -07 000000591 INF: FPGA: Recv ZSGSRD 29620
17-03-18 05:57:25.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.344 -07 000000608 INF: FPGA: Recv ZSGSRD 29609
17-03-18 05:57:25.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.354 -07 000000487 INF: FPGA: Recv ZSGSRD 29613
17-03-18 05:57:25.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.364 -07 000000581 INF: FPGA: Recv ZSGSRD 29613
17-03-18 05:57:25.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:25.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29612
17-03-18 05:57:25.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:25.384 -07 000000581 INF: FPGA: Recv ZPIEZORD 25110
17-03-18 05:57:25.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:25.394 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.9 V.
17-03-18 05:57:25.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:57:25.394 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 6, negNoise = 5
17-03-18 05:57:25.394 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:25.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:57:25.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:25.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:25.394 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:25.394 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:25.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:25.394 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:25.394 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:25.394 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:25.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:25.394 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:25.394 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:25.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:25.394 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:25.394 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:25.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:25.394 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:25.404 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:25.404 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:25.404 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:25.414 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:25.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28699 150\n [Camera]
17-03-18 05:57:25.614 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:26.064 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:26.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:26.064 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:26.064 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:26.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:26.064 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:26.064 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:26.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:57:26.064 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:26.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:57:26.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28699 833
17-03-18 05:57:26.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:26.444 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:57:26.444 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:57:26.444 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:26.444 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:57:26.444 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:57:26.444 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:26.454 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:26.454 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:26.454 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:57:26.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:57:26.614 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:26.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:26.624 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:26.624 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:26.624 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 05:57:26.624 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:26.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:26.624 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:26.624 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:26.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:57:26.814 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:57:26.814 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:26.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28699 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:57:26.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:26.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:26.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130569970377244. ------
17-03-18 05:57:26.814 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:26.814 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13693 mm
17-03-18 05:57:26.814 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:26.814 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:57:26.814 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:57:26.824 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29912, sync = True, waitForSettling = False)
17-03-18 05:57:26.824 -07 000000591 INF: Z Motor: Moving to -0.136928 mm, started at -0.130570 mm, distance = -6.36 um
17-03-18 05:57:26.824 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:26.824 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:26.824 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 05:57:26.824 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:57:26.834 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:26.834 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:26.834 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:26.834 -07 000000462 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:57:26.834 -07 000000591 INF: FPGA: Xmit ZDACW 29912\n [Z Motor]
17-03-18 05:57:26.834 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:57:26.844 -07 000000591 INF: FPGA: 'ZDACW 29912' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:26.844 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:26.854 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:26.864 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:26.864 -07 000000012 INF: FPGA: Recv ZDACR 29912
17-03-18 05:57:26.874 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:26.874 -07 000000591 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:57:27.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:57:27.014 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:57:27.014 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:27.014 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:57:27.014 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:57:27.014 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:27.014 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:27.014 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:57:27.024 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:27.024 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:57:27.044 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:27.044 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-18 05:57:27.224 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:57:27.224 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:57:27.274 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:27.284 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:57:27.294 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:27.294 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:27.294 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:57:27.294 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:57:28.244 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:28.244 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:57:28.254 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.254 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:28.284 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:28.284 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:28.284 -07 000000462 INF: Y Motor: Moved to 66.5386 after 1464 ms (table move)
17-03-18 05:57:28.284 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136928 mm (DAC = 29912)
17-03-18 05:57:28.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.294 -07 000000606 INF: FPGA: Recv ZSGSRD 30608
17-03-18 05:57:28.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:57:28.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.294 -07 000000462 INF: FPGA: Recv ZSGSRD 30601
17-03-18 05:57:28.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:28.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.304 -07 000000012 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:57:28.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.314 -07 000000444 INF: FPGA: Recv ZSGSRD 30603
17-03-18 05:57:28.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.324 -07 000000444 INF: FPGA: Recv ZSGSRD 30603
17-03-18 05:57:28.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.334 -07 000000487 INF: FPGA: Recv ZSGSRD 30598
17-03-18 05:57:28.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.344 -07 000000487 INF: FPGA: Recv ZSGSRD 30607
17-03-18 05:57:28.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:28.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.354 -07 000000606 INF: FPGA: Recv ZSGSRD 30605
17-03-18 05:57:28.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.364 -07 000000606 INF: FPGA: Recv ZSGSRD 30597
17-03-18 05:57:28.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:28.374 -07 000000606 INF: FPGA: Recv ZSGSRD 30606
17-03-18 05:57:28.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.384 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:28.384 -07 000000444 INF: FPGA: Recv ZPIEZORD 26434
17-03-18 05:57:28.394 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.2 V.
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30603 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30603 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30597 (-136.1 uncal um), Max = 30608 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30603, posNoise = 5, negNoise = 6
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: After move to -0.136928, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: Settle wait time = 1469 ms, measure time = 101 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:57:28.394 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:28.444 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:57:28.444 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:28.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:28.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:28.444 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:28.444 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:28.444 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:28.444 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:28.444 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:28.444 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:28.454 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:28.454 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:28.464 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:57:28.464 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:57:28.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:28.514 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:28.814 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:28.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:28.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:28.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start.
17-03-18 05:57:28.854 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:28.854 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:28.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:57:28.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:57:28.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:28.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:57:28.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:57:28.954 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:28.954 -07 000000462 INF: Autofocus start
17-03-18 05:57:28.954 -07 000000462 INF: MeasureProfile start
17-03-18 05:57:28.954 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:28.964 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:28.964 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:28.964 -07 000000462 INF: MeasureProfile done
17-03-18 05:57:28.974 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:57:28.974 -07 000000462 INF: Autofocus finished
17-03-18 05:57:29.164 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:29.164 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:57:29.174 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136923516185446. ----------
17-03-18 05:57:29.174 -07 000000610 INF: Cycle	143	Tile	9	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:29.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-18 05:57:29.174 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.136924 mm, distance = 6.75 um
17-03-18 05:57:29.174 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-18 05:57:29.174 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:57:29.184 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:29.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:29.184 -07 000000561 INF: FPGA: Recv ZDACR 28436
17-03-18 05:57:29.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:29.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.344 -07 000000581 INF: FPGA: Recv ZSGSRD 29549
17-03-18 05:57:29.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.354 -07 000000382 INF: FPGA: Recv ZSGSRD 29554
17-03-18 05:57:29.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.364 -07 000000581 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:57:29.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.374 -07 000000608 INF: FPGA: Recv ZSGSRD 29553
17-03-18 05:57:29.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.384 -07 000000462 INF: FPGA: Recv ZSGSRD 29550
17-03-18 05:57:29.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.394 -07 000000608 INF: FPGA: Recv ZSGSRD 29554
17-03-18 05:57:29.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29558
17-03-18 05:57:29.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29548
17-03-18 05:57:29.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.424 -07 000000462 INF: FPGA: Recv ZSGSRD 29550
17-03-18 05:57:29.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:29.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:57:29.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:29.444 -07 000000608 INF: FPGA: Recv ZPIEZORD 25047
17-03-18 05:57:29.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:29.454 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.9 V.
17-03-18 05:57:29.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29551 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29547 (-129.4 uncal um), Max = 29558 (-129.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:57:29.454 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29551, posNoise = 7, negNoise = 4
17-03-18 05:57:29.454 -07 000000610 INF: Z Motor: After move to -0.130172, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:29.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:57:29.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:29.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:29.454 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:29.454 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:29.454 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:29.454 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:29.454 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:29.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:29.454 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:29.454 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:29.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:29.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:29.454 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:29.464 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:29.464 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:29.464 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:29.464 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:57:29.464 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:29.474 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:29.474 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:29.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28613 150\n [Camera]
17-03-18 05:57:29.674 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:30.124 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:30.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:30.124 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:30.124 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:30.124 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:57:30.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:30.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:30.124 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:30.124 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:30.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:57:30.204 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.989471,
17-03-18 05:57:30.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28613 833
17-03-18 05:57:30.464 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:30.504 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:57:30.504 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:57:30.504 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:30.504 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:30.504 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:57:30.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:57:30.504 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:57:30.504 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:30.514 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:30.524 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:57:30.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:30.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:30.674 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:30.804 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:30.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:30.804 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:30.804 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:30.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:57:30.814 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:30.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:57:30.864 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:30.874 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:30.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28613 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:57:30.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:30.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130165245012313. ------
17-03-18 05:57:30.874 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:30.874 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13699 mm
17-03-18 05:57:30.874 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:30.874 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:57:30.874 -07 000000487 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:57:30.874 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:30.874 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29926, sync = True, waitForSettling = False)
17-03-18 05:57:30.874 -07 000000382 INF: Z Motor: Moving to -0.136992 mm, started at -0.130165 mm, distance = -6.83 um
17-03-18 05:57:30.884 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:57:30.884 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:30.884 -07 000000608 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:57:30.894 -07 000000382 INF: FPGA: Xmit ZDACW 29926\n [Z Motor]
17-03-18 05:57:30.894 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:57:30.894 -07 000000487 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:30.894 -07 000000487 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:30.894 -07 000000487 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:57:30.894 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:57:30.904 -07 000000382 INF: FPGA: 'ZDACW 29926' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:57:30.904 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:30.914 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:30.924 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:30.924 -07 000000444 INF: FPGA: Recv ZDACR 29926
17-03-18 05:57:30.934 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:30.934 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:57:31.104 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:31.104 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 05:57:31.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:57:31.204 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:57:31.204 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:31.204 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:57:31.204 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:57:31.204 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:31.204 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:31.204 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:31.204 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 05:57:31.214 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:57:31.284 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:57:31.284 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:57:31.334 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:31.344 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:57:31.344 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:31.344 -07 000000487 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:31.344 -07 000000487 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:57:31.344 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:57:31.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:32.294 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:32.294 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:57:32.304 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:32.304 -07 000000487 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:32.334 -07 000000487 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:32.334 -07 000000487 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:57:32.334 -07 000000487 INF: Y Motor: Moved to 67.3716 after 1455 ms (table move)
17-03-18 05:57:32.334 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136992 mm (DAC = 29926)
17-03-18 05:57:32.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30615
17-03-18 05:57:32.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:57:32.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30621
17-03-18 05:57:32.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.354 -07 000000608 INF: FPGA: Recv ZSGSRD 30617
17-03-18 05:57:32.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.364 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.364 -07 000000608 INF: FPGA: Recv ZSGSRD 30609
17-03-18 05:57:32.374 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.374 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.374 -07 000000561 INF: FPGA: Recv ZSGSRD 30610
17-03-18 05:57:32.384 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.384 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.384 -07 000000561 INF: FPGA: Recv ZSGSRD 30613
17-03-18 05:57:32.394 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.394 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.394 -07 000000561 INF: FPGA: Recv ZSGSRD 30609
17-03-18 05:57:32.404 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.404 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.404 -07 000000581 INF: FPGA: Recv ZSGSRD 30616
17-03-18 05:57:32.414 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.414 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.414 -07 000000581 INF: FPGA: Recv ZSGSRD 30613
17-03-18 05:57:32.424 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.424 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:32.424 -07 000000581 INF: FPGA: Recv ZSGSRD 30610
17-03-18 05:57:32.434 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.434 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:32.434 -07 000000581 INF: FPGA: Recv ZPIEZORD 26473
17-03-18 05:57:32.444 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.1 V.
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30613 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30613 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30609 (-136.2 uncal um), Max = 30621 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30613, posNoise = 8, negNoise = 4
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: After move to -0.136992, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:57:32.444 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:32.494 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:57:32.494 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:32.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:32.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:32.494 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:32.494 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:32.504 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:32.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:32.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:32.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:32.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:32.504 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:32.514 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:57:32.514 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:57:32.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:32.554 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:32.854 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:32.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:32.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:32.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591995992, 0x0, 559484976) start.
17-03-18 05:57:32.894 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:32.894 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:32.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:57:32.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591995992, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:57:32.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:32.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:32.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:57:32.994 -07 000000479 INF: Autofocus start
17-03-18 05:57:32.994 -07 000000479 INF: MeasureProfile start
17-03-18 05:57:32.994 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:32.994 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:33.004 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:33.004 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:33.004 -07 000000479 INF: MeasureProfile done
17-03-18 05:57:33.004 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:57:33.004 -07 000000479 INF: Autofocus finished
17-03-18 05:57:33.204 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:33.204 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:33.204 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136987758306863. ----------
17-03-18 05:57:33.204 -07 000000610 INF: Cycle	143	Tile	10	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:33.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28421, sync = True, waitForSettling = True)
17-03-18 05:57:33.214 -07 000000610 INF: Z Motor: Moving to -0.130103 mm, started at -0.136988 mm, distance = 6.88 um
17-03-18 05:57:33.214 -07 000000610 INF: FPGA: Xmit ZDACW 28421\n [Z Motor]
17-03-18 05:57:33.214 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:57:33.224 -07 000000610 INF: FPGA: 'ZDACW 28421' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:33.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:33.224 -07 000000012 INF: FPGA: Recv ZDACR 28421
17-03-18 05:57:33.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:33.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.384 -07 000000444 INF: FPGA: Recv ZSGSRD 29542
17-03-18 05:57:33.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:33.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:57:33.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.404 -07 000000382 INF: FPGA: Recv ZSGSRD 29539
17-03-18 05:57:33.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.414 -07 000000444 INF: FPGA: Recv ZSGSRD 29540
17-03-18 05:57:33.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.424 -07 000000012 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:57:33.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.434 -07 000000444 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:57:33.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29545
17-03-18 05:57:33.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29546
17-03-18 05:57:33.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.464 -07 000000012 INF: FPGA: Recv ZSGSRD 29537
17-03-18 05:57:33.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:33.474 -07 000000606 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:57:33.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:33.484 -07 000000012 INF: FPGA: Recv ZPIEZORD 25072
17-03-18 05:57:33.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:33.494 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.8 V.
17-03-18 05:57:33.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29533 (-129.3 uncal um), Max = 29546 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:33.494 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 6, negNoise = 7
17-03-18 05:57:33.494 -07 000000610 INF: Z Motor: After move to -0.130103, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:33.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:57:33.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:33.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:33.494 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:33.494 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:33.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:33.494 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:33.494 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:33.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:33.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:33.494 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:33.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:57:33.494 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:33.504 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:33.504 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:33.504 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:33.504 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:33.514 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:57:33.514 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:33.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:57:33.514 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:33.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28598 150\n [Camera]
17-03-18 05:57:33.714 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:34.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:34.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:34.164 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:34.164 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:34.164 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:34.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:34.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:34.164 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:34.164 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:34.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:34.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28598 833
17-03-18 05:57:34.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:34.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:57:34.544 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:57:34.544 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:34.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:57:34.544 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:57:34.544 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:34.544 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:34.544 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:57:34.544 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:34.554 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:57:34.714 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:34.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:34.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:34.834 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:34.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:34.844 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:34.844 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:34.844 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:57:34.844 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:34.844 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:57:34.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:34.914 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:34.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28598 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:57:34.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:34.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130094578678754. ------
17-03-18 05:57:34.914 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:34.914 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13647 mm
17-03-18 05:57:34.914 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:34.924 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:57:34.924 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:57:34.924 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:34.924 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:57:34.924 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:34.924 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29811, sync = True, waitForSettling = False)
17-03-18 05:57:34.924 -07 000000382 INF: Z Motor: Moving to -0.136466 mm, started at -0.130095 mm, distance = -6.37 um
17-03-18 05:57:34.924 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:57:34.934 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:34.934 -07 000000382 INF: FPGA: Xmit ZDACW 29811\n [Z Motor]
17-03-18 05:57:34.934 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:34.934 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:34.934 -07 000000561 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:57:34.934 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:57:34.944 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:34.944 -07 000000382 INF: FPGA: 'ZDACW 29811' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:57:34.954 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:34.964 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:34.964 -07 000000625 INF: FPGA: Recv ZDACR 29811
17-03-18 05:57:34.974 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:34.974 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:57:35.144 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:35.144 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:57:35.234 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:57:35.234 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:57:35.234 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:35.234 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:57:35.234 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:35.234 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:35.244 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:35.244 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:35.244 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 05:57:35.244 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:57:35.324 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:57:35.324 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 395 ms overall
17-03-18 05:57:35.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:35.384 -07 000000579 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:57:35.394 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:35.394 -07 000000561 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:35.394 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:57:35.394 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.129 mm/sec
17-03-18 05:57:35.564 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.989471,
17-03-18 05:57:36.344 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:36.344 -07 000000625 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:57:36.354 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:36.354 -07 000000561 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:36.384 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:36.384 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:57:36.384 -07 000000561 INF: Y Motor: Moved to 68.2046 after 1460 ms (table move)
17-03-18 05:57:36.384 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136466 mm (DAC = 29811)
17-03-18 05:57:36.384 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.384 -07 000000591 INF: FPGA: Recv ZSGSRD 30543
17-03-18 05:57:36.394 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:36.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.394 -07 000000608 INF: FPGA: Recv ZSGSRD 30531
17-03-18 05:57:36.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.404 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30530
17-03-18 05:57:36.414 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30526
17-03-18 05:57:36.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.424 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.424 -07 000000424 INF: FPGA: Recv ZSGSRD 30537
17-03-18 05:57:36.434 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.434 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.434 -07 000000579 INF: FPGA: Recv ZSGSRD 30536
17-03-18 05:57:36.444 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.444 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30535
17-03-18 05:57:36.454 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.454 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30533
17-03-18 05:57:36.464 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.464 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.464 -07 000000479 INF: FPGA: Recv ZSGSRD 30534
17-03-18 05:57:36.474 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.474 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:36.474 -07 000000608 INF: FPGA: Recv ZSGSRD 30534
17-03-18 05:57:36.484 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.484 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:36.484 -07 000000611 INF: FPGA: Recv ZPIEZORD 26338
17-03-18 05:57:36.494 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.2 V.
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30534 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30534 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30526 (-135.6 uncal um), Max = 30543 (-135.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30534, posNoise = 9, negNoise = 8
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: After move to -0.136466, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:57:36.494 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:36.544 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:57:36.544 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:36.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:36.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:36.544 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:36.544 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:36.544 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:36.544 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:36.544 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:36.544 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:36.554 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:36.554 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:36.564 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:57:36.564 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:57:36.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:36.614 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:36.814 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:36.914 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:36.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:36.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:36.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591995992, 0x0, 559484976) start.
17-03-18 05:57:36.944 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:36.954 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:36.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:57:37.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591995992, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:57:37.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:37.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:57:37.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:57:37.054 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:37.054 -07 000000608 INF: Autofocus start
17-03-18 05:57:37.054 -07 000000608 INF: MeasureProfile start
17-03-18 05:57:37.054 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:37.064 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:37.064 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:37.064 -07 000000608 INF: MeasureProfile done
17-03-18 05:57:37.064 -07 000000608 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:57:37.064 -07 000000608 INF: Autofocus finished
17-03-18 05:57:37.264 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:37.264 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:37.264 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136480245547664. ----------
17-03-18 05:57:37.264 -07 000000610 INF: Cycle	143	Tile	11	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:37.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28352, sync = True, waitForSettling = True)
17-03-18 05:57:37.274 -07 000000610 INF: Z Motor: Moving to -0.129787 mm, started at -0.136480 mm, distance = 6.69 um
17-03-18 05:57:37.274 -07 000000610 INF: FPGA: Xmit ZDACW 28352\n [Z Motor]
17-03-18 05:57:37.274 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:57:37.284 -07 000000610 INF: FPGA: 'ZDACW 28352' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:37.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:37.284 -07 000000561 INF: FPGA: Recv ZDACR 28352
17-03-18 05:57:37.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:37.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.444 -07 000000591 INF: FPGA: Recv ZSGSRD 29496
17-03-18 05:57:37.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:37.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.454 -07 000000444 INF: FPGA: Recv ZSGSRD 29494
17-03-18 05:57:37.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.464 -07 000000579 INF: FPGA: Recv ZSGSRD 29488
17-03-18 05:57:37.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.474 -07 000000512 INF: FPGA: Recv ZSGSRD 29497
17-03-18 05:57:37.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.484 -07 000000012 INF: FPGA: Recv ZSGSRD 29492
17-03-18 05:57:37.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.494 -07 000000479 INF: FPGA: Recv ZSGSRD 29491
17-03-18 05:57:37.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29494
17-03-18 05:57:37.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.514 -07 000000561 INF: FPGA: Recv ZSGSRD 29484
17-03-18 05:57:37.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.524 -07 000000012 INF: FPGA: Recv ZSGSRD 29496
17-03-18 05:57:37.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:37.534 -07 000000444 INF: FPGA: Recv ZSGSRD 29494
17-03-18 05:57:37.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:37.544 -07 000000382 INF: FPGA: Recv ZPIEZORD 24991
17-03-18 05:57:37.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:37.554 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.9 V.
17-03-18 05:57:37.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29493 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29494 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29484 (-129.0 uncal um), Max = 29497 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:57:37.554 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29493, posNoise = 4, negNoise = 9
17-03-18 05:57:37.554 -07 000000610 INF: Z Motor: After move to -0.129787, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:37.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:57:37.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:37.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:37.554 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:37.554 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:37.554 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:37.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:37.554 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:37.554 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:37.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:37.554 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:37.554 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:37.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:37.564 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:37.564 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:37.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:37.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:37.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:37.574 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:37.574 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:37.574 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:57:37.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28529 150\n [Camera]
17-03-18 05:57:37.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:38.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:38.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:38.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:38.224 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:38.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:57:38.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:38.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:38.224 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:38.224 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:38.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:38.414 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28529 833
17-03-18 05:57:38.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:38.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:57:38.604 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:57:38.604 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:38.604 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:57:38.604 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:57:38.604 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:38.604 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:38.614 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:38.614 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:57:38.614 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:57:38.774 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:38.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:38.784 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:38.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:38.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:38.784 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:38.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:57:38.784 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:38.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:38.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:57:38.974 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:38.974 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:38.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28529 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:57:38.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:38.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129792640708091. ------
17-03-18 05:57:38.974 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:38.974 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13638 mm
17-03-18 05:57:38.974 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:39.094 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:39.094 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 05:57:39.094 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:39.094 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:57:39.094 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:57:39.094 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29792, sync = True, waitForSettling = False)
17-03-18 05:57:39.094 -07 000000012 INF: Z Motor: Moving to -0.136379 mm, started at -0.129793 mm, distance = -6.59 um
17-03-18 05:57:39.104 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:39.104 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:57:39.114 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:57:39.114 -07 000000382 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:39.114 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:39.114 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:57:39.114 -07 000000012 INF: FPGA: Xmit ZDACW 29792\n [Z Motor]
17-03-18 05:57:39.114 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:57:39.124 -07 000000012 INF: FPGA: 'ZDACW 29792' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:57:39.124 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:39.124 -07 000000424 INF: FPGA: Recv ZDACR 29792
17-03-18 05:57:39.134 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:39.134 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:39.134 -07 000000012 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 05:57:39.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:57:39.184 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:57:39.184 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:39.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:57:39.184 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:57:39.184 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:39.184 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:39.184 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:39.184 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:57:39.194 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:57:39.294 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:39.294 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:57:39.504 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:57:39.504 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:57:39.554 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:39.564 -07 000000512 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:57:39.564 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:39.564 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:39.564 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:57:39.564 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 05:57:40.514 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:40.514 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:57:40.524 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.524 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:40.554 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:40.554 -07 000000382 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:40.554 -07 000000382 INF: Y Motor: Moved to 69.0264 after 1457 ms (table move)
17-03-18 05:57:40.554 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136379 mm (DAC = 29792)
17-03-18 05:57:40.554 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.554 -07 000000444 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:57:40.564 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:40.564 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.564 -07 000000512 INF: FPGA: Recv ZSGSRD 30523
17-03-18 05:57:40.574 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.574 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.574 -07 000000447 INF: FPGA: Recv ZSGSRD 30508
17-03-18 05:57:40.584 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.584 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.584 -07 000000591 INF: FPGA: Recv ZSGSRD 30513
17-03-18 05:57:40.594 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.594 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:57:40.604 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.614 -07 000000591 INF: FPGA: Recv ZSGSRD 30522
17-03-18 05:57:40.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:40.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.624 -07 000000424 INF: FPGA: Recv ZSGSRD 30516
17-03-18 05:57:40.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.634 -07 000000455 INF: FPGA: Recv ZSGSRD 30525
17-03-18 05:57:40.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.644 -07 000000561 INF: FPGA: Recv ZSGSRD 30518
17-03-18 05:57:40.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:40.654 -07 000000591 INF: FPGA: Recv ZSGSRD 30514
17-03-18 05:57:40.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.664 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:40.664 -07 000000424 INF: FPGA: Recv ZPIEZORD 26348
17-03-18 05:57:40.674 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.2 V.
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30518 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30517 (-135.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30508 (-135.5 uncal um), Max = 30527 (-135.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30518, posNoise = 9, negNoise = 10
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: After move to -0.136379, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: Settle wait time = 1460 ms, measure time = 115 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:57:40.674 -07 000000581 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:40.714 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 05:57:40.714 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:40.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:40.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:40.714 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:40.714 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:40.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:40.714 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:40.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:40.714 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:40.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:40.724 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:40.734 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:57:40.734 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:57:40.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:40.784 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:40.924 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.996267,
17-03-18 05:57:41.084 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:41.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:41.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:41.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:41.124 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:41.124 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:41.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:57:41.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:57:41.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:41.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:41.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:57:41.224 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:41.224 -07 000000561 INF: Autofocus start
17-03-18 05:57:41.224 -07 000000561 INF: MeasureProfile start
17-03-18 05:57:41.224 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:41.234 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:41.234 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:41.234 -07 000000561 INF: MeasureProfile done
17-03-18 05:57:41.234 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:57:41.234 -07 000000561 INF: Autofocus finished
17-03-18 05:57:41.434 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:41.434 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:57:41.434 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136377458153396. ----------
17-03-18 05:57:41.444 -07 000000610 INF: Cycle	143	Tile	12	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:41.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-18 05:57:41.444 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136377 mm, distance = 6.76 um
17-03-18 05:57:41.444 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-18 05:57:41.444 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:57:41.454 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:41.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:41.454 -07 000000444 INF: FPGA: Recv ZDACR 28316
17-03-18 05:57:41.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.614 -07 000000611 INF: FPGA: Recv ZSGSRD 29471
17-03-18 05:57:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.624 -07 000000579 INF: FPGA: Recv ZSGSRD 29467
17-03-18 05:57:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:57:41.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.644 -07 000000581 INF: FPGA: Recv ZSGSRD 29466
17-03-18 05:57:41.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.654 -07 000000611 INF: FPGA: Recv ZSGSRD 29463
17-03-18 05:57:41.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.664 -07 000000579 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:57:41.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.674 -07 000000591 INF: FPGA: Recv ZSGSRD 29472
17-03-18 05:57:41.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.684 -07 000000382 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:57:41.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.694 -07 000000479 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:57:41.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:41.704 -07 000000591 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:57:41.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:41.714 -07 000000581 INF: FPGA: Recv ZPIEZORD 24952
17-03-18 05:57:41.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:41.724 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.9 V.
17-03-18 05:57:41.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29468 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29468 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29463 (-128.8 uncal um), Max = 29474 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:57:41.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29468, posNoise = 6, negNoise = 5
17-03-18 05:57:41.724 -07 000000610 INF: Z Motor: After move to -0.129622, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:41.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:57:41.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:41.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:41.724 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:41.724 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:41.724 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:41.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:41.724 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:41.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:41.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:41.724 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:41.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:41.724 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:41.734 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:41.734 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:41.734 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:57:41.734 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:41.744 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:57:41.744 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:41.744 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:57:41.744 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:57:41.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28493 150\n [Camera]
17-03-18 05:57:41.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:41.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:42.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:42.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:42.394 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:42.394 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:42.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:42.394 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:42.394 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:42.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:42.404 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:42.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2168768160, 0x0, 418435064) start.
17-03-18 05:57:42.584 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 833
17-03-18 05:57:42.734 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:42.764 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:57:42.764 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:57:42.764 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:42.774 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:42.774 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:57:42.774 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2168768160, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:57:42.774 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:57:42.774 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:42.774 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:42.784 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:57:42.944 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:42.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:42.944 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:42.944 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:42.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:57:42.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:42.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:42.954 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:42.954 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:42.954 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:43.134 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:43.144 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:43.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28493 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:57:43.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:43.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129632035404547. ------
17-03-18 05:57:43.144 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:43.144 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13628 mm
17-03-18 05:57:43.144 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:43.144 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29771, sync = True, waitForSettling = False)
17-03-18 05:57:43.144 -07 000000382 INF: Z Motor: Moving to -0.136283 mm, started at -0.129632 mm, distance = -6.65 um
17-03-18 05:57:43.144 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:43.144 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:57:43.144 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:57:43.154 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:43.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:43.154 -07 000000625 INF: FPGA: Recv YRDPOS 141367
17-03-18 05:57:43.164 -07 000000382 INF: FPGA: Xmit ZDACW 29771\n [Z Motor]
17-03-18 05:57:43.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:43.164 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:43.164 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:57:43.164 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:43.164 -07 000000561 INF: Y Motor: Moving 1353 steps-33
17-03-18 05:57:43.174 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:43.174 -07 000000382 INF: FPGA: 'ZDACW 29771' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:57:43.184 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:43.194 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:43.194 -07 000000579 INF: FPGA: Recv ZDACR 29771
17-03-18 05:57:43.204 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:43.204 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:57:43.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:57:43.344 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:43.344 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:43.344 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:57:43.344 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:57:43.344 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:43.354 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:43.354 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:43.354 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:57:43.354 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:57:43.374 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:43.374 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:57:43.564 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:57:43.564 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 05:57:43.614 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:43.614 -07 000000608 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:57:43.624 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:43.624 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:43.624 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:57:43.624 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 05:57:44.574 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:44.574 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:57:44.584 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:44.584 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:44.614 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:44.614 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:44.614 -07 000000561 INF: Y Motor: Moved to 69.8628 after 1465 ms (table move)
17-03-18 05:57:44.614 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136283 mm (DAC = 29771)
17-03-18 05:57:44.614 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.624 -07 000000611 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:57:44.624 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:57:44.624 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30502
17-03-18 05:57:44.634 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:44.634 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.634 -07 000000455 INF: FPGA: Recv ZSGSRD 30499
17-03-18 05:57:44.644 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.644 -07 000000561 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:57:44.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.654 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.654 -07 000000611 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:57:44.664 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.664 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.664 -07 000000424 INF: FPGA: Recv ZSGSRD 30510
17-03-18 05:57:44.674 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.674 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.674 -07 000000625 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:57:44.684 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.684 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.684 -07 000000561 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:57:44.694 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.694 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.694 -07 000000512 INF: FPGA: Recv ZSGSRD 30500
17-03-18 05:57:44.704 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.704 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:44.704 -07 000000382 INF: FPGA: Recv ZSGSRD 30497
17-03-18 05:57:44.714 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.714 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:44.714 -07 000000625 INF: FPGA: Recv ZPIEZORD 26352
17-03-18 05:57:44.724 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.1 V.
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30504 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30497 (-135.4 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 8, negNoise = 7
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: After move to -0.136283, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: Settle wait time = 1469 ms, measure time = 103 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:57:44.724 -07 000000591 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:44.774 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:57:44.774 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:44.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:44.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:44.774 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:44.774 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:44.774 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:44.774 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:44.774 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:44.774 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:44.784 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:44.784 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:44.794 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:57:44.794 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:57:44.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:44.844 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:45.144 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:45.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:45.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:45.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2204190424, 0x0, 559484976) start.
17-03-18 05:57:45.184 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:45.184 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:45.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:57:45.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2204190424, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:57:45.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:45.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:45.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:57:45.284 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:45.284 -07 000000479 INF: Autofocus start
17-03-18 05:57:45.284 -07 000000479 INF: MeasureProfile start
17-03-18 05:57:45.284 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:45.294 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:45.294 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:45.294 -07 000000479 INF: MeasureProfile done
17-03-18 05:57:45.294 -07 000000479 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 05:57:45.294 -07 000000479 INF: Autofocus finished
17-03-18 05:57:45.494 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:45.494 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:45.494 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136287519183411. ----------
17-03-18 05:57:45.504 -07 000000610 INF: Cycle	143	Tile	13	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:45.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28232, sync = True, waitForSettling = True)
17-03-18 05:57:45.504 -07 000000610 INF: Z Motor: Moving to -0.129238 mm, started at -0.136288 mm, distance = 7.05 um
17-03-18 05:57:45.504 -07 000000610 INF: FPGA: Xmit ZDACW 28232\n [Z Motor]
17-03-18 05:57:45.504 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:57:45.514 -07 000000610 INF: FPGA: 'ZDACW 28232' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:45.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:45.514 -07 000000424 INF: FPGA: Recv ZDACR 28232
17-03-18 05:57:45.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:45.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29409
17-03-18 05:57:45.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.684 -07 000000561 INF: FPGA: Recv ZSGSRD 29409
17-03-18 05:57:45.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.694 -07 000000591 INF: FPGA: Recv ZSGSRD 29412
17-03-18 05:57:45.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.704 -07 000000512 INF: FPGA: Recv ZSGSRD 29405
17-03-18 05:57:45.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.714 -07 000000625 INF: FPGA: Recv ZSGSRD 29407
17-03-18 05:57:45.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.724 -07 000000581 INF: FPGA: Recv ZSGSRD 29412
17-03-18 05:57:45.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.734 -07 000000579 INF: FPGA: Recv ZSGSRD 29407
17-03-18 05:57:45.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.744 -07 000000455 INF: FPGA: Recv ZSGSRD 29409
17-03-18 05:57:45.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.754 -07 000000012 INF: FPGA: Recv ZSGSRD 29406
17-03-18 05:57:45.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:45.764 -07 000000444 INF: FPGA: Recv ZSGSRD 29411
17-03-18 05:57:45.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:45.774 -07 000000581 INF: FPGA: Recv ZPIEZORD 24935
17-03-18 05:57:45.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:45.784 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.8 V.
17-03-18 05:57:45.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29409 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29409 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29405 (-128.5 uncal um), Max = 29412 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:57:45.784 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29409, posNoise = 3, negNoise = 4
17-03-18 05:57:45.784 -07 000000610 INF: Z Motor: After move to -0.129238, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:45.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:57:45.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:45.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:45.784 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:45.784 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:45.784 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:45.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:45.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:45.784 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:45.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:45.784 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:45.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:45.784 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:45.794 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:45.794 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:45.794 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:45.794 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:45.804 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:45.804 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:45.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:45.804 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:45.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28409 150\n [Camera]
17-03-18 05:57:46.004 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:46.284 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.005817,
17-03-18 05:57:46.454 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:46.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:46.454 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:46.454 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:46.454 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:57:46.454 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:46.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:46.454 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:46.454 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:46.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:57:46.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28409 833
17-03-18 05:57:46.794 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:46.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:46.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:57:46.834 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:57:46.834 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:46.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:57:46.834 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:57:46.834 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:46.844 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:46.844 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:57:46.844 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:57:46.844 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:57:47.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:47.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:47.004 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:47.014 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:47.014 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:57:47.014 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:47.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:47.014 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:47.014 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:47.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:57:47.204 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:57:47.204 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:47.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28409 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-18 05:57:47.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:47.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129253006888183. ------
17-03-18 05:57:47.334 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:47.334 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13549 mm
17-03-18 05:57:47.334 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:47.334 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:57:47.334 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:57:47.334 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:47.344 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29597, sync = True, waitForSettling = False)
17-03-18 05:57:47.344 -07 000000579 INF: Z Motor: Moving to -0.135486 mm, started at -0.129253 mm, distance = -6.23 um
17-03-18 05:57:47.344 -07 000000579 INF: FPGA: Xmit ZDACW 29597\n [Z Motor]
17-03-18 05:57:47.344 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:47.344 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:57:47.354 -07 000000579 INF: FPGA: 'ZDACW 29597' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:47.354 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:47.364 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:47.364 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:57:47.374 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:47.374 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:57:47.374 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:47.374 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:47.374 -07 000000608 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:57:47.374 -07 000000479 INF: FPGA: Recv ZDACR 29597
17-03-18 05:57:47.384 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:47.384 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:47.384 -07 000000579 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:57:47.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:57:47.414 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:57:47.414 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:47.414 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 05:57:47.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:57:47.414 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:47.424 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:47.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:57:47.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:57:47.434 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:57:47.554 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:47.554 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:57:47.754 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:57:47.754 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 387 ms overall
17-03-18 05:57:47.804 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:47.814 -07 000000581 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:57:47.814 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:47.814 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:47.814 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:57:47.814 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 05:57:48.764 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:48.764 -07 000000012 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:57:48.774 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.774 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:48.804 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:48.804 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:48.804 -07 000000608 INF: Y Motor: Moved to 70.6880 after 1462 ms (table move)
17-03-18 05:57:48.804 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135486 mm (DAC = 29597)
17-03-18 05:57:48.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.804 -07 000000455 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:57:48.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:57:48.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.814 -07 000000608 INF: FPGA: Recv ZSGSRD 30385
17-03-18 05:57:48.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.824 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.824 -07 000000581 INF: FPGA: Recv ZSGSRD 30385
17-03-18 05:57:48.834 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.834 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.834 -07 000000512 INF: FPGA: Recv ZSGSRD 30378
17-03-18 05:57:48.844 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.844 -07 000000479 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:57:48.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.854 -07 000000012 INF: FPGA: Recv ZSGSRD 30372
17-03-18 05:57:48.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.864 -07 000000608 INF: FPGA: Recv ZSGSRD 30376
17-03-18 05:57:48.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.894 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.894 -07 000000561 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:57:48.904 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:48.904 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.904 -07 000000424 INF: FPGA: Recv ZSGSRD 30386
17-03-18 05:57:48.914 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.924 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:48.924 -07 000000479 INF: FPGA: Recv ZSGSRD 30379
17-03-18 05:57:48.934 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:48.934 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:48.934 -07 000000512 INF: FPGA: Recv ZPIEZORD 26180
17-03-18 05:57:48.944 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30381 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30372 (-134.6 uncal um), Max = 30386 (-134.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30381, posNoise = 5, negNoise = 9
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: After move to -0.135486, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: Settle wait time = 1464 ms, measure time = 136 ms (allowed 150 ms), total time = 1600 ms
17-03-18 05:57:48.944 -07 000000591 INF: Z Motor: Waiting extra 14 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:48.964 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:57:48.964 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:48.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:48.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:48.964 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:48.964 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:48.964 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:48.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:48.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:48.964 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:48.974 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:48.974 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:48.984 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:57:48.984 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:57:48.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:49.034 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:57:49.334 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:57:49.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:57:49.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:49.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:49.374 -07 000000479 INF: FPGA: Recv @CAMSNAP 384
17-03-18 05:57:49.374 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:49.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 05:57:49.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:57:49.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:49.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:49.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:57:49.474 -07 000000382 INF: Autofocus start
17-03-18 05:57:49.474 -07 000000382 INF: MeasureProfile start
17-03-18 05:57:49.474 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:49.474 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:49.484 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:49.484 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:49.484 -07 000000382 INF: MeasureProfile done
17-03-18 05:57:49.484 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:57:49.484 -07 000000382 INF: Autofocus finished
17-03-18 05:57:49.684 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:49.684 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:49.684 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135497341089975. ----------
17-03-18 05:57:49.684 -07 000000610 INF: Cycle	143	Tile	14	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:49.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28138, sync = True, waitForSettling = True)
17-03-18 05:57:49.694 -07 000000610 INF: Z Motor: Moving to -0.128808 mm, started at -0.135497 mm, distance = 6.69 um
17-03-18 05:57:49.694 -07 000000610 INF: FPGA: Xmit ZDACW 28138\n [Z Motor]
17-03-18 05:57:49.694 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:57:49.704 -07 000000610 INF: FPGA: 'ZDACW 28138' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:57:49.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:49.704 -07 000000561 INF: FPGA: Recv ZDACR 28138
17-03-18 05:57:49.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:49.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.864 -07 000000479 INF: FPGA: Recv ZSGSRD 29340
17-03-18 05:57:49.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:49.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29340
17-03-18 05:57:49.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.884 -07 000000625 INF: FPGA: Recv ZSGSRD 29342
17-03-18 05:57:49.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.894 -07 000000579 INF: FPGA: Recv ZSGSRD 29343
17-03-18 05:57:49.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.904 -07 000000512 INF: FPGA: Recv ZSGSRD 29339
17-03-18 05:57:49.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.914 -07 000000455 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:49.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.924 -07 000000591 INF: FPGA: Recv ZSGSRD 29346
17-03-18 05:57:49.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.934 -07 000000608 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:49.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.944 -07 000000579 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:49.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:49.954 -07 000000611 INF: FPGA: Recv ZSGSRD 29338
17-03-18 05:57:49.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:49.964 -07 000000382 INF: FPGA: Recv ZPIEZORD 24829
17-03-18 05:57:49.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:49.974 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.9 V.
17-03-18 05:57:49.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29341 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29341 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29338 (-128.0 uncal um), Max = 29346 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:57:49.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29341, posNoise = 5, negNoise = 3
17-03-18 05:57:49.974 -07 000000610 INF: Z Motor: After move to -0.128808, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:49.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:57:49.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:49.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:49.974 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:49.974 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:49.974 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:49.974 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:49.974 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:49.974 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:49.974 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:49.974 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:49.974 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:49.974 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:49.984 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:49.984 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:49.984 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:49.984 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:49.994 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:49.994 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:57:49.994 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:57:49.994 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:57:49.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28315 150\n [Camera]
17-03-18 05:57:50.194 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:50.644 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:50.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:50.644 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:50.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:50.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:50.644 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:50.644 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:50.654 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:50.654 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:50.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:50.834 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28315 833
17-03-18 05:57:50.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:51.024 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:57:51.024 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:57:51.024 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:51.034 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:51.034 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:57:51.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:57:51.034 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:57:51.034 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:51.034 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:51.044 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:57:51.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:51.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:51.204 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:51.204 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:51.204 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:57:51.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:51.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:51.204 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:51.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:51.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:57:51.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:57:51.394 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:51.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28315 150' command took 2 ms to send, 1393 ms to get response, and 1397 ms overall
17-03-18 05:57:51.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:51.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128816160462543. ------
17-03-18 05:57:51.394 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:51.394 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13547 mm
17-03-18 05:57:51.394 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:51.404 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:51.404 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:51.404 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:57:51.404 -07 000000444 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:57:51.524 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:51.524 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29594, sync = True, waitForSettling = False)
17-03-18 05:57:51.524 -07 000000581 INF: Z Motor: Moving to -0.135473 mm, started at -0.128816 mm, distance = -6.66 um
17-03-18 05:57:51.534 -07 000000581 INF: FPGA: Xmit ZDACW 29594\n [Z Motor]
17-03-18 05:57:51.534 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:57:51.544 -07 000000581 INF: FPGA: 'ZDACW 29594' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:57:51.544 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:51.544 -07 000000611 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:57:51.554 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:57:51.554 -07 000000444 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:51.554 -07 000000444 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:51.554 -07 000000444 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:57:51.554 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:51.554 -07 000000561 INF: FPGA: Recv ZDACR 29594
17-03-18 05:57:51.564 -07 000000581 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:51.564 -07 000000581 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:57:51.564 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:51.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:57:51.604 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:57:51.604 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:51.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:57:51.604 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:57:51.604 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:51.604 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:51.604 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:51.604 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:57:51.614 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:57:51.644 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 4.003063,
17-03-18 05:57:51.724 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:51.724 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 05:57:51.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:51.934 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:57:51.934 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:57:51.984 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:51.994 -07 000000382 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:57:52.004 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:52.004 -07 000000444 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:52.004 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:57:52.004 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 05:57:52.954 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:52.954 -07 000000437 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:57:52.964 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:52.964 -07 000000444 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:52.994 -07 000000444 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:52.994 -07 000000444 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:52.994 -07 000000444 INF: Y Motor: Moved to 71.5181 after 1590 ms (table move)
17-03-18 05:57:52.994 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135473 mm (DAC = 29594)
17-03-18 05:57:52.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:52.994 -07 000000561 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:57:53.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:57:53.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.004 -07 000000591 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:57:53.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.014 -07 000000625 INF: FPGA: Recv ZSGSRD 30379
17-03-18 05:57:53.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.024 -07 000000012 INF: FPGA: Recv ZSGSRD 30371
17-03-18 05:57:53.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.034 -07 000000444 INF: FPGA: Recv ZSGSRD 30375
17-03-18 05:57:53.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.044 -07 000000591 INF: FPGA: Recv ZSGSRD 30376
17-03-18 05:57:53.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.054 -07 000000608 INF: FPGA: Recv ZSGSRD 30371
17-03-18 05:57:53.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.064 -07 000000382 INF: FPGA: Recv ZSGSRD 30379
17-03-18 05:57:53.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.074 -07 000000561 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:57:53.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:53.084 -07 000000591 INF: FPGA: Recv ZSGSRD 30386
17-03-18 05:57:53.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.094 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:53.094 -07 000000479 INF: FPGA: Recv ZPIEZORD 26230
17-03-18 05:57:53.104 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.1 V.
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30378 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30379 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30371 (-134.6 uncal um), Max = 30387 (-134.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30378, posNoise = 9, negNoise = 7
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: After move to -0.135473, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: Settle wait time = 1473 ms, measure time = 104 ms (allowed 150 ms), total time = 1577 ms
17-03-18 05:57:53.104 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:53.154 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 05:57:53.154 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:53.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:53.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:53.154 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:53.154 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:53.154 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:53.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:53.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:57:53.154 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:53.164 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:53.164 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:53.164 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:57:53.164 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:57:53.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:53.214 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:53.514 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:53.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:53.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:53.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:57:53.554 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:53.554 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:53.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:57:53.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:57:53.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:53.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:53.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:57:53.654 -07 000000444 INF: Autofocus start
17-03-18 05:57:53.654 -07 000000444 INF: MeasureProfile start
17-03-18 05:57:53.654 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:53.654 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:53.664 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:53.664 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:53.664 -07 000000444 INF: MeasureProfile done
17-03-18 05:57:53.664 -07 000000444 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:57:53.664 -07 000000444 INF: Autofocus finished
17-03-18 05:57:53.864 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:53.864 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:57:53.864 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135478068453549. ----------
17-03-18 05:57:53.864 -07 000000610 INF: Cycle	143	Tile	15	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:53.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28135, sync = True, waitForSettling = True)
17-03-18 05:57:53.874 -07 000000610 INF: Z Motor: Moving to -0.128794 mm, started at -0.135478 mm, distance = 6.68 um
17-03-18 05:57:53.874 -07 000000610 INF: FPGA: Xmit ZDACW 28135\n [Z Motor]
17-03-18 05:57:53.874 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:57:53.884 -07 000000610 INF: FPGA: 'ZDACW 28135' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:53.884 -07 000000581 INF: FPGA: Recv ZDACR 28135
17-03-18 05:57:53.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:53.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:54.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:54.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:54.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.054 -07 000000581 INF: FPGA: Recv ZSGSRD 29342
17-03-18 05:57:54.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:57:54.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.074 -07 000000591 INF: FPGA: Recv ZSGSRD 29332
17-03-18 05:57:54.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.084 -07 000000382 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:54.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29337
17-03-18 05:57:54.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.104 -07 000000012 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:57:54.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29342
17-03-18 05:57:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:57:54.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.124 -07 000000608 INF: FPGA: Recv ZSGSRD 29338
17-03-18 05:57:54.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:54.134 -07 000000625 INF: FPGA: Recv ZSGSRD 29338
17-03-18 05:57:54.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:54.144 -07 000000382 INF: FPGA: Recv ZPIEZORD 24822
17-03-18 05:57:54.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:54.154 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.9 V.
17-03-18 05:57:54.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29339 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29332 (-128.0 uncal um), Max = 29342 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:57:54.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29339, posNoise = 3, negNoise = 7
17-03-18 05:57:54.154 -07 000000610 INF: Z Motor: After move to -0.128794, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:54.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:57:54.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:54.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:54.154 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:54.154 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:54.154 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:54.154 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:54.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:54.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:54.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:57:54.154 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:54.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:54.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:54.164 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:54.164 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:54.164 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:54.164 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:54.174 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:57:54.174 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:57:54.174 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 05:57:54.174 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:57:54.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28312 150\n [Camera]
17-03-18 05:57:54.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:54.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 05:57:54.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 05:57:54.834 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:54.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 05:57:54.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 05:57:54.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:54.834 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:54.834 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:57:54.844 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:54.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:57:55.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28312 833
17-03-18 05:57:55.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 05:57:55.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:57:55.224 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:57:55.224 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:55.224 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:57:55.224 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:57:55.224 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:55.224 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:55.224 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:55.224 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:57:55.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:57:55.384 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:55.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:55.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:55.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:55.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:55.394 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:55.394 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:55.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:57:55.394 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:55.394 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:57:55.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:57:55.574 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:55.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28312 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-18 05:57:55.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:55.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.12880331203826. ------
17-03-18 05:57:55.584 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13525 mm
17-03-18 05:57:55.584 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:55.584 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:55.584 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:57:55.584 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:57:55.594 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29545, sync = True, waitForSettling = False)
17-03-18 05:57:55.594 -07 000000561 INF: Z Motor: Moving to -0.135248 mm, started at -0.128803 mm, distance = -6.45 um
17-03-18 05:57:55.594 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:55.594 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:55.594 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:57:55.594 -07 000000625 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:57:55.604 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:55.604 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:55.604 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:55.604 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:55.604 -07 000000512 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:57:55.614 -07 000000561 INF: FPGA: Xmit ZDACW 29545\n [Z Motor]
17-03-18 05:57:55.614 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:57:55.624 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:55.624 -07 000000561 INF: FPGA: 'ZDACW 29545' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:55.634 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:55.634 -07 000000479 INF: FPGA: Recv ZDACR 29545
17-03-18 05:57:55.644 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:57:55.644 -07 000000561 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:57:55.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:57:55.794 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:57:55.794 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:55.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:57:55.794 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:57:55.794 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:55.794 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:55.794 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:57:55.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:57:55.804 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:57:55.804 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:57:55.804 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:57:55.994 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:57:55.994 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:57:56.044 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:56.054 -07 000000581 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:57:56.054 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:57:56.054 -07 000000512 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:56.054 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:57:56.054 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.154 mm/sec
17-03-18 05:57:56.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:57:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:57:57.004 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:57.004 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.994908,
17-03-18 05:57:57.004 -07 000000561 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:57:57.014 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.014 -07 000000512 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:57.054 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:57:57.054 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:57:57.054 -07 000000512 INF: Y Motor: Moved to 72.3486 after 1460 ms (table move)
17-03-18 05:57:57.054 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135248 mm (DAC = 29545)
17-03-18 05:57:57.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.054 -07 000000591 INF: FPGA: Recv ZSGSRD 30345
17-03-18 05:57:57.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:57:57.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.064 -07 000000479 INF: FPGA: Recv ZSGSRD 30341
17-03-18 05:57:57.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.074 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.074 -07 000000455 INF: FPGA: Recv ZSGSRD 30342
17-03-18 05:57:57.084 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.084 -07 000000581 INF: FPGA: Recv ZSGSRD 30342
17-03-18 05:57:57.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.094 -07 000000382 INF: FPGA: Recv ZSGSRD 30341
17-03-18 05:57:57.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.104 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.104 -07 000000591 INF: FPGA: Recv ZSGSRD 30340
17-03-18 05:57:57.114 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.114 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.114 -07 000000444 INF: FPGA: Recv ZSGSRD 30353
17-03-18 05:57:57.124 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.124 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30345
17-03-18 05:57:57.134 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.134 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.134 -07 000000382 INF: FPGA: Recv ZSGSRD 30344
17-03-18 05:57:57.144 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.144 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:57.144 -07 000000625 INF: FPGA: Recv ZSGSRD 30343
17-03-18 05:57:57.154 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.154 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:57.154 -07 000000479 INF: FPGA: Recv ZPIEZORD 26159
17-03-18 05:57:57.164 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.2 V.
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30344 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30342 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30340 (-134.4 uncal um), Max = 30353 (-134.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30344, posNoise = 9, negNoise = 4
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: After move to -0.135248, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:57:57.164 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:57:57.214 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:57:57.214 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:57:57.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:57.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:57.214 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:57.214 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:57.214 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:57:57.214 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:57.224 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:57.224 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:57:57.224 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:57:57.224 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:57:57.234 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:57:57.234 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:57:57.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:57:57.284 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:57:57.584 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:57:57.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:57:57.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:57:57.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:57:57.624 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:57:57.624 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:57:57.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:57:57.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:57:57.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:57.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:57:57.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:57:57.724 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:57.724 -07 000000581 INF: Autofocus start
17-03-18 05:57:57.724 -07 000000581 INF: MeasureProfile start
17-03-18 05:57:57.734 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:57.734 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:57:57.734 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:57:57.734 -07 000000581 INF: MeasureProfile done
17-03-18 05:57:57.734 -07 000000581 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:57:57.734 -07 000000581 INF: Autofocus finished
17-03-18 05:57:57.934 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:57:57.934 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:57:57.944 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.13525964524073. ----------
17-03-18 05:57:57.944 -07 000000610 INF: Cycle	143	Tile	16	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:57:57.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28040, sync = True, waitForSettling = True)
17-03-18 05:57:57.944 -07 000000610 INF: Z Motor: Moving to -0.128359 mm, started at -0.135260 mm, distance = 6.90 um
17-03-18 05:57:57.944 -07 000000610 INF: FPGA: Xmit ZDACW 28040\n [Z Motor]
17-03-18 05:57:57.944 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:57:57.954 -07 000000610 INF: FPGA: 'ZDACW 28040' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:57:57.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:57.954 -07 000000591 INF: FPGA: Recv ZDACR 28040
17-03-18 05:57:57.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:57.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:57:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.114 -07 000000608 INF: FPGA: Recv ZSGSRD 29272
17-03-18 05:57:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:57:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.124 -07 000000424 INF: FPGA: Recv ZSGSRD 29271
17-03-18 05:57:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.134 -07 000000611 INF: FPGA: Recv ZSGSRD 29270
17-03-18 05:57:58.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.144 -07 000000591 INF: FPGA: Recv ZSGSRD 29269
17-03-18 05:57:58.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.154 -07 000000579 INF: FPGA: Recv ZSGSRD 29270
17-03-18 05:57:58.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.164 -07 000000382 INF: FPGA: Recv ZSGSRD 29270
17-03-18 05:57:58.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.174 -07 000000611 INF: FPGA: Recv ZSGSRD 29273
17-03-18 05:57:58.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.184 -07 000000444 INF: FPGA: Recv ZSGSRD 29267
17-03-18 05:57:58.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.194 -07 000000512 INF: FPGA: Recv ZSGSRD 29269
17-03-18 05:57:58.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:57:58.204 -07 000000479 INF: FPGA: Recv ZSGSRD 29270
17-03-18 05:57:58.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:57:58.214 -07 000000455 INF: FPGA: Recv ZPIEZORD 24767
17-03-18 05:57:58.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:57:58.224 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.9 V.
17-03-18 05:57:58.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29270 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29270 (-127.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29267 (-127.6 uncal um), Max = 29273 (-127.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:57:58.224 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29270, posNoise = 3, negNoise = 3
17-03-18 05:57:58.224 -07 000000610 INF: Z Motor: After move to -0.128359, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:57:58.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:57:58.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:57:58.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:57:58.224 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:57:58.224 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:57:58.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:57:58.224 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:57:58.224 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:57:58.224 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:57:58.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:57:58.224 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:57:58.224 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:57:58.224 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:57:58.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:57:58.234 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:57:58.234 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:57:58.234 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:57:58.244 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:57:58.244 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:57:58.244 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:57:58.244 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:57:58.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28216 150\n [Camera]
17-03-18 05:57:58.444 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:57:58.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:57:58.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:57:58.894 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:58.894 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:58.894 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:57:58.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:57:58.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:57:58.894 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:58.894 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:58.894 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:57:59.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28216 833
17-03-18 05:57:59.234 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:57:59.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:57:59.274 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:57:59.274 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:59.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:57:59.274 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:57:59.274 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:59.284 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:57:59.284 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:57:59.284 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:57:59.284 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:57:59.444 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:57:59.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:57:59.454 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:57:59.454 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:57:59.454 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:57:59.454 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:57:59.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:57:59.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:57:59.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:57:59.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:57:59.644 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-18 05:57:59.644 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:57:59.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28216 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-18 05:57:59.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:57:59.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128360041400478. ------
17-03-18 05:57:59.644 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13494 mm
17-03-18 05:57:59.644 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:57:59.764 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:57:59.774 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29478, sync = True, waitForSettling = False)
17-03-18 05:57:59.774 -07 000000424 INF: Z Motor: Moving to -0.134942 mm, started at -0.128360 mm, distance = -6.58 um
17-03-18 05:57:59.774 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:57:59.774 -07 000000479 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:57:59.774 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:57:59.784 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 05:57:59.794 -07 000000424 INF: FPGA: Xmit ZDACW 29478\n [Z Motor]
17-03-18 05:57:59.794 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:57:59.804 -07 000000424 INF: FPGA: 'ZDACW 29478' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:57:59.804 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:57:59.804 -07 000000455 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:57:59.814 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:57:59.814 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:57:59.814 -07 000000479 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:57:59.814 -07 000000479 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:57:59.814 -07 000000479 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:57:59.834 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:57:59.834 -07 000000512 INF: FPGA: Recv ZDACR 29478
17-03-18 05:57:59.844 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:57:59.844 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:57:59.844 -07 000000424 INF: Z Motor: MoveAbsStepped took 70 ms (did NOT wait for settling yet))
17-03-18 05:57:59.854 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:57:59.854 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:57:59.854 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:59.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:57:59.854 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:57:59.854 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:57:59.854 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:57:59.864 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:57:59.864 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:57:59.864 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:58:00.014 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:58:00.014 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:58:00.214 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:58:00.214 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-18 05:58:00.264 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:00.274 -07 000000455 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:58:00.274 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 05:58:00.274 -07 000000479 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:00.274 -07 000000479 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:58:00.274 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.844 mm, average velocity = 2.099 mm/sec
17-03-18 05:58:01.224 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:01.224 -07 000000581 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:58:01.234 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:01.234 -07 000000479 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:01.264 -07 000000479 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:58:01.264 -07 000000479 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:58:01.264 -07 000000479 INF: Y Motor: Moved to 73.1753 after 1492 ms (table move)
17-03-18 05:58:01.264 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134942 mm (DAC = 29478)
17-03-18 05:58:01.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.264 -07 000000581 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:58:01.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:58:01.274 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.274 -07 000000625 INF: FPGA: Recv ZSGSRD 30293
17-03-18 05:58:01.284 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.284 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.284 -07 000000424 INF: FPGA: Recv ZSGSRD 30296
17-03-18 05:58:01.294 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.294 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.294 -07 000000479 INF: FPGA: Recv ZSGSRD 30299
17-03-18 05:58:01.304 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.304 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.304 -07 000000455 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:58:01.314 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.314 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.314 -07 000000611 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:58:01.324 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.324 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.324 -07 000000012 INF: FPGA: Recv ZSGSRD 30294
17-03-18 05:58:01.334 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.334 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.334 -07 000000382 INF: FPGA: Recv ZSGSRD 30294
17-03-18 05:58:01.344 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.344 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.344 -07 000000479 INF: FPGA: Recv ZSGSRD 30294
17-03-18 05:58:01.354 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.354 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:01.354 -07 000000611 INF: FPGA: Recv ZSGSRD 30300
17-03-18 05:58:01.364 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.364 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:01.364 -07 000000455 INF: FPGA: Recv ZPIEZORD 26141
17-03-18 05:58:01.374 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.498 V. Piezo Error = -9.1 V.
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30295 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30294 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30292 (-134.1 uncal um), Max = 30300 (-134.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30295, posNoise = 5, negNoise = 3
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: After move to -0.134942, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: Settle wait time = 1495 ms, measure time = 105 ms (allowed 150 ms), total time = 1600 ms
17-03-18 05:58:01.374 -07 000000444 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:58:01.424 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1773 ms
17-03-18 05:58:01.424 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:58:01.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:01.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:01.424 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:01.424 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:01.424 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:58:01.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:01.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:58:01.424 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:58:01.434 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:58:01.434 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:58:01.434 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:58:01.434 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:58:01.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:58:01.484 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:58:01.784 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:58:01.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:58:01.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:58:01.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:58:01.814 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:01.824 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:58:01.824 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:58:01.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:58:01.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:58:01.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:01.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:58:01.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:58:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:58:01.924 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:58:01.924 -07 000000561 INF: Autofocus start
17-03-18 05:58:01.924 -07 000000561 INF: MeasureProfile start
17-03-18 05:58:01.924 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:58:01.934 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:58:01.934 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:58:01.934 -07 000000561 INF: MeasureProfile done
17-03-18 05:58:01.934 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:58:01.934 -07 000000561 INF: Autofocus finished
17-03-18 05:58:02.134 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:58:02.134 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:58:02.134 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134944858845783. ----------
17-03-18 05:58:02.134 -07 000000610 INF: Cycle	143	Tile	17	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:58:02.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27973, sync = True, waitForSettling = True)
17-03-18 05:58:02.144 -07 000000610 INF: Z Motor: Moving to -0.128052 mm, started at -0.134945 mm, distance = 6.89 um
17-03-18 05:58:02.144 -07 000000610 INF: FPGA: Xmit ZDACW 27973\n [Z Motor]
17-03-18 05:58:02.144 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:58:02.154 -07 000000610 INF: FPGA: 'ZDACW 27973' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:58:02.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:58:02.154 -07 000000561 INF: FPGA: Recv ZDACR 27973
17-03-18 05:58:02.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:58:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.314 -07 000000437 INF: FPGA: Recv ZSGSRD 29215
17-03-18 05:58:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29228
17-03-18 05:58:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.334 -07 000000382 INF: FPGA: Recv ZSGSRD 29224
17-03-18 05:58:02.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.344 -07 000000561 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:58:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29223
17-03-18 05:58:02.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.374 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.996267,
17-03-18 05:58:02.374 -07 000000579 INF: FPGA: Recv ZSGSRD 29223
17-03-18 05:58:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:02.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.394 -07 000000444 INF: FPGA: Recv ZSGSRD 29220
17-03-18 05:58:02.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.404 -07 000000382 INF: FPGA: Recv ZSGSRD 29228
17-03-18 05:58:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.424 -07 000000561 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:58:02.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:02.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:02.434 -07 000000591 INF: FPGA: Recv ZSGSRD 29224
17-03-18 05:58:02.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:02.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:02.464 -07 000000591 INF: FPGA: Recv ZPIEZORD 24730
17-03-18 05:58:02.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:58:02.474 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.9 V.
17-03-18 05:58:02.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29222 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29223 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29215 (-127.2 uncal um), Max = 29228 (-127.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:58:02.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29222, posNoise = 6, negNoise = 7
17-03-18 05:58:02.474 -07 000000610 INF: Z Motor: After move to -0.128052, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:02.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 05:58:02.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:02.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:02.474 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:02.474 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:02.474 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:58:02.474 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:58:02.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:02.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:58:02.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:58:02.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:58:02.474 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:58:02.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:58:02.484 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:58:02.484 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:58:02.484 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:58:02.484 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:58:02.484 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:58:02.494 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:58:02.494 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:58:02.494 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:58:02.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28150 150\n [Camera]
17-03-18 05:58:02.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:58:03.144 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:58:03.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:58:03.144 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:03.144 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:58:03.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:58:03.144 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:03.144 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:03.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:58:03.154 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:03.154 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:58:03.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28150 835
17-03-18 05:58:03.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:58:03.544 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:58:03.544 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:58:03.544 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:03.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:58:03.544 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:58:03.544 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:03.544 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:03.544 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:58:03.544 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:03.554 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:58:03.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:58:03.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:58:03.704 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:03.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:58:03.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:58:03.704 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:03.704 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:03.704 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:58:03.714 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:03.714 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:58:03.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:58:03.894 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:58:03.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28150 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-18 05:58:03.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:58:03.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.128051679217674. ------
17-03-18 05:58:03.894 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:58:03.894 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13432 mm
17-03-18 05:58:03.894 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:58:03.894 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:58:03.894 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:58:03.894 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:58:03.894 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29342, sync = True, waitForSettling = False)
17-03-18 05:58:03.894 -07 000000479 INF: Z Motor: Moving to -0.134319 mm, started at -0.128052 mm, distance = -6.27 um
17-03-18 05:58:03.904 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:58:03.904 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:03.904 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:58:03.914 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:03.914 -07 000000424 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:03.914 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:58:04.034 -07 000000479 INF: FPGA: Xmit ZDACW 29342\n [Z Motor]
17-03-18 05:58:04.034 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:58:04.034 -07 000000424 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:58:04.034 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:58:04.044 -07 000000479 INF: FPGA: 'ZDACW 29342' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 05:58:04.044 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:58:04.054 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:58:04.054 -07 000000437 INF: FPGA: Recv ZDACR 29342
17-03-18 05:58:04.064 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:04.064 -07 000000479 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-18 05:58:04.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:58:04.104 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:58:04.104 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:04.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:58:04.104 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:58:04.104 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:04.104 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:58:04.104 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:58:04.104 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:58:04.114 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:58:04.114 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 81 ms to get response, and 212 ms overall
17-03-18 05:58:04.114 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:58:04.414 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:58:04.414 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 05:58:04.454 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:04.464 -07 000000561 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:58:04.474 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:04.474 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:04.474 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:58:04.474 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.201 mm/sec
17-03-18 05:58:05.424 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:05.424 -07 000000479 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:58:05.434 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:05.434 -07 000000424 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:05.454 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:58:05.454 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:58:05.454 -07 000000424 INF: Y Motor: Moved to 74.0078 after 1554 ms (table move)
17-03-18 05:58:05.454 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134319 mm (DAC = 29342)
17-03-18 05:58:05.454 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.464 -07 000000012 INF: FPGA: Recv ZSGSRD 30196
17-03-18 05:58:05.464 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:58:05.464 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.464 -07 000000479 INF: FPGA: Recv ZSGSRD 30200
17-03-18 05:58:05.474 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.474 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.474 -07 000000455 INF: FPGA: Recv ZSGSRD 30197
17-03-18 05:58:05.484 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.484 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30191
17-03-18 05:58:05.494 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.494 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.494 -07 000000579 INF: FPGA: Recv ZSGSRD 30192
17-03-18 05:58:05.504 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.504 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.504 -07 000000437 INF: FPGA: Recv ZSGSRD 30199
17-03-18 05:58:05.514 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.514 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.514 -07 000000512 INF: FPGA: Recv ZSGSRD 30194
17-03-18 05:58:05.524 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.524 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.524 -07 000000591 INF: FPGA: Recv ZSGSRD 30206
17-03-18 05:58:05.534 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.534 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.534 -07 000000561 INF: FPGA: Recv ZSGSRD 30194
17-03-18 05:58:05.544 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.544 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:05.544 -07 000000625 INF: FPGA: Recv ZSGSRD 30195
17-03-18 05:58:05.554 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.554 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:05.554 -07 000000382 INF: FPGA: Recv ZPIEZORD 26015
17-03-18 05:58:05.564 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.477 V. Piezo Error = -9.2 V.
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30196 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30196 (-133.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30191 (-133.5 uncal um), Max = 30206 (-133.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30196, posNoise = 10, negNoise = 5
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: After move to -0.134319, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: Settle wait time = 1557 ms, measure time = 103 ms (allowed 150 ms), total time = 1660 ms
17-03-18 05:58:05.564 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:58:05.614 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-18 05:58:05.614 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:58:05.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:05.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:05.614 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:05.614 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:05.614 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:58:05.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:05.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:58:05.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:58:05.624 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:58:05.624 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:58:05.624 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:58:05.624 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:58:05.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:58:05.674 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:58:05.974 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:58:05.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:58:05.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:58:05.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:58:06.014 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:58:06.014 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:58:06.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:58:06.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:58:06.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:06.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:58:06.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:58:06.114 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:58:06.114 -07 000000581 INF: Autofocus start
17-03-18 05:58:06.114 -07 000000581 INF: MeasureProfile start
17-03-18 05:58:06.114 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:58:06.124 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:58:06.124 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:58:06.124 -07 000000581 INF: MeasureProfile done
17-03-18 05:58:06.124 -07 000000581 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 05:58:06.124 -07 000000581 INF: Autofocus finished
17-03-18 05:58:06.324 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:58:06.324 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:58:06.324 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134308861843749. ----------
17-03-18 05:58:06.324 -07 000000610 INF: Cycle	143	Tile	18	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:58:06.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27752, sync = True, waitForSettling = True)
17-03-18 05:58:06.334 -07 000000610 INF: Z Motor: Moving to -0.127041 mm, started at -0.134309 mm, distance = 7.27 um
17-03-18 05:58:06.334 -07 000000610 INF: FPGA: Xmit ZDACW 27752\n [Z Motor]
17-03-18 05:58:06.334 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:58:06.344 -07 000000610 INF: FPGA: 'ZDACW 27752' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:58:06.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:58:06.344 -07 000000512 INF: FPGA: Recv ZDACR 27752
17-03-18 05:58:06.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:58:06.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.504 -07 000000561 INF: FPGA: Recv ZSGSRD 29068
17-03-18 05:58:06.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:06.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.514 -07 000000444 INF: FPGA: Recv ZSGSRD 29064
17-03-18 05:58:06.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29070
17-03-18 05:58:06.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.534 -07 000000424 INF: FPGA: Recv ZSGSRD 29059
17-03-18 05:58:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.544 -07 000000611 INF: FPGA: Recv ZSGSRD 29063
17-03-18 05:58:06.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.554 -07 000000437 INF: FPGA: Recv ZSGSRD 29066
17-03-18 05:58:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.564 -07 000000382 INF: FPGA: Recv ZSGSRD 29066
17-03-18 05:58:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29061
17-03-18 05:58:06.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.584 -07 000000579 INF: FPGA: Recv ZSGSRD 29063
17-03-18 05:58:06.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:06.594 -07 000000611 INF: FPGA: Recv ZSGSRD 29065
17-03-18 05:58:06.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:06.604 -07 000000625 INF: FPGA: Recv ZPIEZORD 24532
17-03-18 05:58:06.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:06.614 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.235 V. Piezo Error = -9.9 V.
17-03-18 05:58:06.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29064 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29064 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29059 (-126.2 uncal um), Max = 29070 (-126.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:58:06.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29064, posNoise = 6, negNoise = 5
17-03-18 05:58:06.614 -07 000000610 INF: Z Motor: After move to -0.127041, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:06.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:58:06.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:06.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:06.614 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:06.614 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:06.614 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:58:06.614 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:58:06.614 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:58:06.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:06.614 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:58:06.614 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:58:06.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:58:06.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:58:06.624 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:58:06.624 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:58:06.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:58:06.624 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:58:06.634 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:58:06.634 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:58:06.634 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:58:06.634 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:58:06.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 27929 150\n [Camera]
17-03-18 05:58:06.814 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:58:06.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:58:07.284 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:58:07.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:58:07.284 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:07.284 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:58:07.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:58:07.284 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:07.284 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:07.284 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:58:07.294 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:07.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:58:07.474 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27929 834
17-03-18 05:58:07.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:58:07.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:58:07.684 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:58:07.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:07.684 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:58:07.684 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:58:07.684 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:07.684 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:07.684 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:07.684 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:58:07.694 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:58:07.784 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.99219,
17-03-18 05:58:07.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:58:07.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:58:07.844 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:07.844 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:07.844 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:58:07.844 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:58:07.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:58:07.844 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:07.844 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:07.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:58:08.034 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 05:58:08.034 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:58:08.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 27929 150' command took 2 ms to send, 1396 ms to get response, and 1400 ms overall
17-03-18 05:58:08.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:58:08.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127036653699275. ------
17-03-18 05:58:08.044 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:58:08.044 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13343 mm
17-03-18 05:58:08.044 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:58:08.044 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:58:08.044 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:58:08.044 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 05:58:08.044 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29148, sync = True, waitForSettling = False)
17-03-18 05:58:08.044 -07 000000591 INF: Z Motor: Moving to -0.133431 mm, started at -0.127037 mm, distance = -6.39 um
17-03-18 05:58:08.054 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:08.054 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:08.054 -07 000000444 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:58:08.064 -07 000000591 INF: FPGA: Xmit ZDACW 29148\n [Z Motor]
17-03-18 05:58:08.064 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:58:08.064 -07 000000625 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:08.064 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:58:08.064 -07 000000625 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:58:08.064 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:58:08.074 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:58:08.074 -07 000000591 INF: FPGA: 'ZDACW 29148' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:58:08.084 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:58:08.094 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:58:08.094 -07 000000608 INF: FPGA: Recv ZDACR 29148
17-03-18 05:58:08.104 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:58:08.104 -07 000000591 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:58:08.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:58:08.244 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:58:08.244 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:08.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:58:08.244 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:58:08.244 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:08.244 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:58:08.254 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:58:08.254 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:58:08.254 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:58:08.274 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:58:08.274 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 05:58:08.454 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:58:08.454 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:58:08.494 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:08.494 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:58:08.504 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:08.504 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:08.504 -07 000000625 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:58:08.504 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:58:09.454 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:09.454 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:58:09.464 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.464 -07 000000625 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:09.484 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:58:09.484 -07 000000625 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:58:09.484 -07 000000625 INF: Y Motor: Moved to 74.8315 after 1434 ms (table move)
17-03-18 05:58:09.484 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133431 mm (DAC = 29148)
17-03-18 05:58:09.484 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.484 -07 000000581 INF: FPGA: Recv ZSGSRD 30057
17-03-18 05:58:09.494 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:58:09.494 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30049
17-03-18 05:58:09.504 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.504 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.504 -07 000000382 INF: FPGA: Recv ZSGSRD 30062
17-03-18 05:58:09.514 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.514 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.514 -07 000000591 INF: FPGA: Recv ZSGSRD 30066
17-03-18 05:58:09.524 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.524 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.524 -07 000000012 INF: FPGA: Recv ZSGSRD 30065
17-03-18 05:58:09.534 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.534 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.534 -07 000000512 INF: FPGA: Recv ZSGSRD 30061
17-03-18 05:58:09.544 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.544 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.544 -07 000000382 INF: FPGA: Recv ZSGSRD 30063
17-03-18 05:58:09.554 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.554 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.554 -07 000000424 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:58:09.564 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.564 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.564 -07 000000611 INF: FPGA: Recv ZSGSRD 30063
17-03-18 05:58:09.574 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.574 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:09.574 -07 000000512 INF: FPGA: Recv ZSGSRD 30058
17-03-18 05:58:09.584 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.584 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:09.584 -07 000000382 INF: FPGA: Recv ZPIEZORD 25848
17-03-18 05:58:09.594 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.3 V.
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30060 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30062 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30049 (-132.6 uncal um), Max = 30066 (-132.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30060, posNoise = 6, negNoise = 11
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: After move to -0.133431, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-18 05:58:09.594 -07 000000437 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:58:09.644 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 05:58:09.644 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:58:09.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:09.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:09.644 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:09.644 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:09.644 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:58:09.644 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:09.644 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:58:09.644 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:58:09.654 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:58:09.654 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:58:09.664 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:58:09.664 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:58:09.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:58:09.714 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:58:10.014 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:58:10.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:58:10.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:58:10.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:58:10.054 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:58:10.054 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:58:10.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 388 ms overall
17-03-18 05:58:10.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:58:10.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:10.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:58:10.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:58:10.154 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:58:10.154 -07 000000012 INF: Autofocus start
17-03-18 05:58:10.154 -07 000000012 INF: MeasureProfile start
17-03-18 05:58:10.154 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:58:10.164 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:58:10.164 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:58:10.174 -07 000000012 INF: MeasureProfile done
17-03-18 05:58:10.174 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:58:10.174 -07 000000012 INF: Autofocus finished
17-03-18 05:58:10.364 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:58:10.364 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:58:10.364 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133435168992469. ----------
17-03-18 05:58:10.364 -07 000000610 INF: Cycle	143	Tile	19	Exposure Settings		A	448	G	215	T	215	C	448
17-03-18 05:58:10.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27672, sync = True, waitForSettling = True)
17-03-18 05:58:10.374 -07 000000610 INF: Z Motor: Moving to -0.126674 mm, started at -0.133435 mm, distance = 6.76 um
17-03-18 05:58:10.374 -07 000000610 INF: FPGA: Xmit ZDACW 27672\n [Z Motor]
17-03-18 05:58:10.374 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:58:10.384 -07 000000610 INF: FPGA: 'ZDACW 27672' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:58:10.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:58:10.384 -07 000000611 INF: FPGA: Recv ZDACR 27672
17-03-18 05:58:10.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:58:10.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.544 -07 000000581 INF: FPGA: Recv ZSGSRD 29005
17-03-18 05:58:10.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.554 -07 000000479 INF: FPGA: Recv ZSGSRD 29008
17-03-18 05:58:10.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.574 -07 000000625 INF: FPGA: Recv ZSGSRD 29008
17-03-18 05:58:10.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:10.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29012
17-03-18 05:58:10.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.604 -07 000000608 INF: FPGA: Recv ZSGSRD 29008
17-03-18 05:58:10.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:58:10.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.614 -07 000000444 INF: FPGA: Recv ZSGSRD 29013
17-03-18 05:58:10.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29009
17-03-18 05:58:10.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:58:10.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.654 -07 000000479 INF: FPGA: Recv ZSGSRD 29007
17-03-18 05:58:10.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.664 -07 000000611 INF: FPGA: Recv ZSGSRD 29004
17-03-18 05:58:10.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:58:10.674 -07 000000444 INF: FPGA: Recv ZSGSRD 29003
17-03-18 05:58:10.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:58:10.684 -07 000000437 INF: FPGA: Recv ZPIEZORD 24509
17-03-18 05:58:10.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:10.694 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.222 V. Piezo Error = -9.9 V.
17-03-18 05:58:10.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29008 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29008 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29003 (-125.9 uncal um), Max = 29013 (-125.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:58:10.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29008, posNoise = 5, negNoise = 5
17-03-18 05:58:10.694 -07 000000610 INF: Z Motor: After move to -0.126674, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:58:10.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 05:58:10.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:58:10.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:58:10.694 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:58:10.694 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:58:10.694 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:58:10.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:58:10.694 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:58:10.694 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:58:10.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:58:10.694 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:58:10.694 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:58:10.694 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:58:10.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:58:10.704 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:58:10.704 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:58:10.704 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:58:10.704 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:58:10.704 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:58:10.714 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:58:10.714 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:58:10.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 27848 150\n [Camera]
17-03-18 05:58:10.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:58:11.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-18 05:58:11.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-18 05:58:11.364 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:11.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:11.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:58:11.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-18 05:58:11.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-18 05:58:11.364 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:11.364 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:11.364 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:58:11.554 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27848 833
17-03-18 05:58:11.704 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-18 05:58:11.744 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:58:11.744 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:58:11.744 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:11.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:58:11.744 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:58:11.744 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:11.744 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:11.744 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:58:11.744 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:58:11.754 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:58:11.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 142. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:58:11.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-18 05:58:11.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-18 05:58:11.924 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:58:11.924 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:58:11.924 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:58:11.924 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-18 05:58:11.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-18 05:58:11.924 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:58:11.924 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:58:11.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:58:12.114 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-18 05:58:12.114 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:58:12.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 27848 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-18 05:58:12.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:58:12.314 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:58:12.314 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:12.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:58:12.314 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:58:12.314 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:58:12.314 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:58:12.324 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:58:12.324 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:58:12.324 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:58:12.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:58:12.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 148 ms.
17-03-18 05:58:12.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:58:12.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:58:12.524 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 05:58:12.524 -07 000000610 INF: Imaging Cycle 143: ScanTilesCommand Cycle 143 time end. Duration was 165907 ms.
17-03-18 05:58:12.524 -07 000000610 INF: =================== Cycle #143 ===================
17-03-18 05:58:12.524 -07 000000610 INF: ===================  ===================
17-03-18 05:58:12.524 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:58:12.534 -07 000000608 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 05:58:12.534 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:58:12.534 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 05:58:12.534 -07 000000512 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 143, FrontChillerTemperature: 3.99219, FrontChillerHeatSinkTemperature: 0.488417, AmbientTemperature: 18.68782, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.33784, GreenLEDSensorTemperature: 27.42151, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 05:58:12.654 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.