17-03-18 05:58:12.704 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:12.704 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:58:12.704 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 05:58:12.704 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:12.704 -07 000000512 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:58:12.714 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:58:12.714 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:12.714 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:58:12.714 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:58:12.714 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:58:12.824 -07 000000625 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:58:12.824 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 119 ms overall
17-03-18 05:58:12.824 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:58:12.824 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:58:12.834 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.549 mm, average velocity = 4.614 mm/sec
17-03-18 05:58:13.144 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.978563,
17-03-18 05:58:15.834 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:58:15.834 -07 000000625 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:58:15.844 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:58:15.844 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:58:15.864 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:58:15.864 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:58:15.864 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3160 ms
17-03-18 05:58:15.874 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 60° ===================
17-03-18 05:58:15.874 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:58:16.004 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:58:16.004 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-18 05:58:16.014 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:16.014 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 60° ===================
17-03-18 05:58:16.014 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:16.014 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:58:16.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:16.044 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:58:16.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:58:16.044 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:58:16.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:58:16.364 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:58:16.364 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:58:16.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:16.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:58:16.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:58:16.534 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:16.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:16.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:16.564 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:58:16.564 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:58:16.564 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:58:16.694 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:58:16.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:16.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1907, R2=1984, Total=3891. Warn if over 250 bubbles per interval.
17-03-18 05:58:18.504 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.958108,
17-03-18 05:58:19.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:19.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:20.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:20.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:20.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:20.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:20.794 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:58:20.794 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:20.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:20.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:58:20.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:58:21.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:21.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:58:21.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:58:21.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:21.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:21.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:21.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:21.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:21.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:58:21.734 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:21.814 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 05:58:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1909, R2=1986, Total=3895. Warn if over 250 bubbles per interval.
17-03-18 05:58:22.954 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:58:22.954 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:58:22.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:22.974 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:58:22.974 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:58:22.974 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:58:23.104 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:58:23.124 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:58:23.124 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:58:23.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:23.194 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:58:23.194 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:58:23.294 -07 000000610 INF: =================== Cycle #144, Pumping Reagent CMS (4) ===================
17-03-18 05:58:23.294 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:23.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:23.324 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:58:23.324 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:58:23.324 -07 000000610 INF: =================== Cycle #144, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:58:23.454 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:58:23.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:23.864 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.007176,
17-03-18 05:58:24.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:24.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:25.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:25.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:25.414 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:58:25.414 -07 000000610 INF: =================== Cycle #144, Pumping Reagent CMS (4) ===================
17-03-18 05:58:25.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:25.574 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:58:25.574 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:58:25.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:25.734 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:58:25.734 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:58:25.734 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:25.864 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:25.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:26.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:26.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:26.354 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:58:26.354 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:26.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1909, R2=1986, Total=3895. Warn if over 250 bubbles per interval.
17-03-18 05:58:27.574 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:58:27.574 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:58:27.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:27.594 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:58:27.594 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:58:27.594 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:58:27.744 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:58:27.764 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:58:27.764 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:58:27.814 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:27.834 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:58:27.834 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:58:27.934 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:27.934 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:27.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:27.964 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:58:27.964 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:58:27.964 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:58:28.094 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:58:28.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:29.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:29.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:29.034 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:58:29.034 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:29.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:29.194 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:58:29.194 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:58:29.224 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.001704,
17-03-18 05:58:29.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:29.354 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:58:29.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:58:29.354 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:29.484 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:29.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:29.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:29.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:29.974 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:58:29.974 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:29.974 -07 000000591 INF: WaitCommand(10000) start
17-03-18 05:58:29.974 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:58:29.974 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:58:31.194 -07 000000012 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:58:31.194 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-18 05:58:31.224 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:58:31.224 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:58:31.354 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:58:31.394 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:31.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:58:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1986, Total=3896. Warn if over 250 bubbles per interval.
17-03-18 05:58:32.924 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:32.954 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:33.374 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:33.404 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:33.404 -07 000000012 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:58:33.404 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:58:33.404 -07 000000012 INF: ===================  ===================
17-03-18 05:58:34.584 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.014009,
17-03-18 05:58:36.814 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:58:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1987, Total=3897. Warn if over 250 bubbles per interval.
17-03-18 05:58:39.944 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.971733,
17-03-18 05:58:39.984 -07 000000591 INF: WaitCommand(10000) end
17-03-18 05:58:39.984 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:39.984 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:39.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:40.014 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:58:40.014 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:58:40.014 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:58:40.144 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:58:40.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:41.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:58:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:58:45.304 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.96762,
17-03-18 05:58:46.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:46.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:46.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:46.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:46.814 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:58:47.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:47.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:47.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:47.694 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:48.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:48.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:48.144 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:58:48.144 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:48.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:48.304 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:58:48.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:58:48.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:48.464 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:58:48.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:58:48.464 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:48.594 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:48.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:49.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:49.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:49.084 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:58:49.084 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:50.304 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:58:50.304 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:58:50.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:50.324 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:58:50.324 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:58:50.324 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:58:50.534 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:58:50.554 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:58:50.554 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:58:50.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:50.624 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:58:50.624 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:58:50.664 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.999021,
17-03-18 05:58:50.724 -07 000000610 INF: =================== Cycle #144, Pumping Reagent IMT (1) ===================
17-03-18 05:58:50.724 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:50.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:50.754 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:58:50.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:58:50.754 -07 000000610 INF: =================== Cycle #144, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:58:50.884 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:58:50.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:51.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:58:52.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:52.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:52.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:52.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:52.844 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:58:52.844 -07 000000610 INF: =================== Cycle #144, Pumping Reagent IMT (1) ===================
17-03-18 05:58:52.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:53.004 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:58:53.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:58:53.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:53.164 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:58:53.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:58:53.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:53.294 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:53.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:53.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:53.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:53.784 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:58:53.784 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:55.004 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:58:55.004 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:58:55.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:55.024 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:58:55.024 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:58:55.024 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:58:55.254 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:58:55.274 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:58:55.274 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:58:55.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:58:55.344 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:58:55.344 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:58:55.444 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:55.444 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:58:55.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:55.474 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:58:55.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:58:55.474 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:58:55.604 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:58:55.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:58:56.024 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.011254,
17-03-18 05:58:56.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:56.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:56.544 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 05:58:56.544 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:58:56.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:56.704 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:58:56.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:58:56.814 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:58:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:58:56.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:58:56.864 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:58:56.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:58:56.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:58:56.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:58:57.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:57.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:58:57.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:58:57.484 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:58:57.484 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:57.484 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 65° ===================
17-03-18 05:58:57.484 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:58:57.484 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:58:57.484 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:58:57.494 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:58:57.494 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:58:57.494 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 05:58:57.504 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:58:57.504 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 65° ===================
17-03-18 05:58:57.504 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:58:57.504 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:59:01.384 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.000345,
17-03-18 05:59:01.814 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:01.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:06.744 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.007176,
17-03-18 05:59:06.814 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:11.814 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:11.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:12.104 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.026244,
17-03-18 05:59:16.814 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:17.464 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.012614,
17-03-18 05:59:21.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:22.824 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.996267,
17-03-18 05:59:26.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:27.514 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:59:27.514 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:59:27.514 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:59:27.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:59:27.644 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:59:27.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:59:27.644 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:59:27.774 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:59:27.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:59:28.184 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.98264,
17-03-18 05:59:28.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:59:28.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:59:28.384 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:59:28.384 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:59:28.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:59:28.544 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:59:28.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:59:28.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:59:28.704 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:59:28.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:59:28.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:59:28.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:59:28.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:59:29.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:59:29.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:59:29.324 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:59:29.324 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:59:29.324 -07 000000625 INF: WaitCommand(30000) start
17-03-18 05:59:29.324 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:59:29.324 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:59:30.544 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:59:30.544 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 05:59:30.574 -07 000000608 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:59:30.574 -07 000000608 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:59:30.704 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:59:30.744 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:59:31.814 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:33.084 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 05:59:33.114 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:59:33.534 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 05:59:33.544 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.958108,
17-03-18 05:59:33.564 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:59:33.564 -07 000000608 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:59:33.564 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:59:33.564 -07 000000608 INF: ===================  ===================
17-03-18 05:59:36.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:38.904 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.983999,
17-03-18 05:59:41.814 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:44.264 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.98264,
17-03-18 05:59:46.814 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:49.624 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.993549,
17-03-18 05:59:51.814 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:54.984 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.020806,
17-03-18 05:59:56.814 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:59:56.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 05:59:59.334 -07 000000625 INF: WaitCommand(30000) end
17-03-18 05:59:59.334 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 22° ===================
17-03-18 05:59:59.334 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:59:59.334 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:59:59.344 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:59:59.344 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:59:59.344 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:59:59.344 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 05:59:59.354 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:59:59.354 -07 000000610 INF: =================== Cycle #144, Flow Cell Temp 22° ===================
17-03-18 05:59:59.354 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 05:59:59.354 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 05:59:59.354 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:59:59.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:59:59.394 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:59:59.394 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:59:59.394 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:59:59.524 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:59:59.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:00.344 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.015368,
17-03-18 06:00:01.814 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:01.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1910, R2=1988, Total=3898. Warn if over 250 bubbles per interval.
17-03-18 06:00:02.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:02.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:03.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:03.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:03.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:03.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:03.624 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:00:03.624 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 06:00:03.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:03.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:00:03.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:00:03.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:03.944 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:00:03.944 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:00:03.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:00:04.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:00:04.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:04.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:04.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:04.564 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:00:04.564 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 06:00:05.704 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.020806,
17-03-18 06:00:05.784 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:00:05.784 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:00:05.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:05.804 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:00:05.804 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:00:05.804 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:00:05.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:00:05.974 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:00:05.974 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:00:06.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:06.044 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:00:06.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:00:06.144 -07 000000610 INF: =================== Cycle #144, Pumping Reagent USM (2) ===================
17-03-18 06:00:06.144 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:00:06.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:06.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:00:06.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:00:06.174 -07 000000610 INF: =================== Cycle #144, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:00:06.304 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:00:06.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:06.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:00:06.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1911, R2=1989, Total=3900. Warn if over 250 bubbles per interval.
17-03-18 06:00:07.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:07.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:08.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:08.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:08.264 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:00:08.264 -07 000000610 INF: =================== Cycle #144, Pumping Reagent USM (2) ===================
17-03-18 06:00:08.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:08.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:00:08.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:00:08.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:08.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:00:08.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:00:08.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:00:08.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:00:08.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:09.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:09.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:09.204 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:00:09.204 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 06:00:10.424 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:00:10.424 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:00:10.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:10.444 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:00:10.444 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:00:10.444 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:00:10.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:00:10.614 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:00:10.614 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:00:10.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:10.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:00:10.684 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:00:10.784 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 06:00:10.784 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:00:10.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:10.814 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:00:10.814 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:00:10.814 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:00:10.944 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:00:10.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:11.064 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.037119,
17-03-18 06:00:11.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1911, R2=1989, Total=3900. Warn if over 250 bubbles per interval.
17-03-18 06:00:11.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:11.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:11.884 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:00:11.884 -07 000000610 INF: =================== Cycle #144, Pumping Reagent PR2 (3) ===================
17-03-18 06:00:12.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:12.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:00:12.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:00:12.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:00:12.204 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:00:12.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:00:12.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:00:12.334 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:00:12.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:12.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:12.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:12.824 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:00:12.824 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 06:00:12.824 -07 000000608 INF: WaitCommand(10000) start
17-03-18 06:00:12.824 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:00:12.824 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:00:14.044 -07 000000579 INF: AsyncDelayTimer waited 1213ms
17-03-18 06:00:14.044 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 06:00:14.074 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:00:14.074 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:00:14.204 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:00:14.244 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:15.774 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:15.804 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:00:16.224 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 06:00:16.254 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:00:16.254 -07 000000579 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 06:00:16.254 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:00:16.254 -07 000000579 INF: ===================  ===================
17-03-18 06:00:16.424 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.99219,
17-03-18 06:00:16.814 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:00:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1989, Total=3901. Warn if over 250 bubbles per interval.
17-03-18 06:00:21.784 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.986717,
17-03-18 06:00:21.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:21.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1989, Total=3901. Warn if over 250 bubbles per interval.
17-03-18 06:00:22.834 -07 000000608 INF: WaitCommand(10000) end
17-03-18 06:00:22.834 -07 000000610 INF: =================== Cycle #144, Imaging ===================
17-03-18 06:00:22.834 -07 000000610 INF: Imaging Cycle 144: ScanTilesCommand Cycle 144 time start.
17-03-18 06:00:22.834 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:00:22.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:22.864 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:00:22.864 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:00:22.864 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:00:23.164 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:00:23.184 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:00:23.184 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:00:23.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:00:23.254 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:00:23.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:23.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:23.254 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:00:23.254 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:23.254 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:00:23.254 -07 000000579 INF: FPGA: Recv EXLED1ON 
17-03-18 06:00:23.264 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:00:23.264 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:00:23.264 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23136
17-03-18 06:00:23.274 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:23.274 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23136 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.6 mW
17-03-18 06:00:23.274 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:00:23.274 -07 000000424 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:00:23.284 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:23.284 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-18 06:00:23.284 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:00:23.284 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:00:23.284 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:23.284 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:00:23.284 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-18 06:00:23.294 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:23.294 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:00:23.294 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 06:00:23.304 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:23.304 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 06:00:23.304 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:00:23.304 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:00:23.314 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:23.314 -07 000000618 INF: GreenLED: LED was on for 20 ms
17-03-18 06:00:23.314 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:00:23.314 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:00:23.314 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 06:00:23.324 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:23.324 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:00:23.824 -07 000000012 INF: FPGA: Recv EMOUT
17-03-18 06:00:23.824 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:00:23.824 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:00:23.824 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-18 06:00:23.834 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:23.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:23.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126676897819337. ------
17-03-18 06:00:23.834 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:23.834 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17845 mm
17-03-18 06:00:23.834 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:23.834 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:00:23.834 -07 000000581 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:00:23.834 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38983, sync = True, waitForSettling = False)
17-03-18 06:00:23.844 -07 000000625 INF: Z Motor: Moving to -0.178453 mm, started at -0.126677 mm, distance = -51.78 um
17-03-18 06:00:23.844 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:23.844 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:23.844 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:00:23.844 -07 000000444 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:00:23.854 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:23.854 -07 000000625 INF: FPGA: Xmit ZDACW 38983\n [Z Motor]
17-03-18 06:00:23.854 -07 000000581 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:23.854 -07 000000581 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:00:23.854 -07 000000581 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:00:23.854 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:00:23.864 -07 000000625 INF: FPGA: 'ZDACW 38983' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:23.864 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:23.874 -07 000000581 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:00:23.884 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:23.884 -07 000000608 INF: FPGA: Recv ZDACR 38983
17-03-18 06:00:23.894 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:00:23.894 -07 000000625 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:00:24.064 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:24.064 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:00:25.554 -07 000000501 INF: FPGA: Recv YMVTO 122702 24776
17-03-18 06:00:25.554 -07 000000581 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 06:00:25.554 -07 000000581 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:00:25.554 -07 000000581 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:00:25.554 -07 000000581 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.467 mm, average velocity = 9.072 mm/sec
17-03-18 06:00:26.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:00:26.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:27.144 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.014009,
17-03-18 06:00:28.404 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:28.404 -07 000000561 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:00:28.414 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:28.414 -07 000000581 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:28.444 -07 000000581 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:28.444 -07 000000581 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:00:28.444 -07 000000581 INF: Y Motor: Moved to 59.9097 after 4603 ms
17-03-18 06:00:28.444 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178453 mm (DAC = 38983)
17-03-18 06:00:28.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.454 -07 000000581 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:00:28.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:00:28.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.454 -07 000000501 INF: FPGA: Recv ZSGSRD 37076
17-03-18 06:00:28.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.464 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.464 -07 000000581 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:00:28.474 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.474 -07 000000501 INF: FPGA: Recv ZSGSRD 37071
17-03-18 06:00:28.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.484 -07 000000581 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:00:28.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.494 -07 000000608 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:00:28.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.504 -07 000000608 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:00:28.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.514 -07 000000012 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:00:28.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.524 -07 000000608 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:00:28.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:28.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:28.534 -07 000000608 INF: FPGA: Recv ZSGSRD 37072
17-03-18 06:00:28.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.544 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:28.544 -07 000000608 INF: FPGA: Recv ZPIEZORD 33331
17-03-18 06:00:28.554 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.3 V.
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37070 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37069 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37065 (-177.5 uncal um), Max = 37076 (-177.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37070, posNoise = 6, negNoise = 5
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: After move to -0.178453, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: Settle wait time = 4607 ms, measure time = 103 ms (allowed 150 ms), total time = 4710 ms
17-03-18 06:00:28.554 -07 000000579 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:28.604 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 06:00:28.604 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:28.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:28.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:28.604 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:28.604 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:28.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:28.604 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:28.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:28.604 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:00:28.634 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:00:28.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:28.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:00:28.634 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:28.654 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:00:28.654 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 06:00:28.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:28.694 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:28.994 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:28.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:28.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:29.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576774856, 0x0, 559484976) start.
17-03-18 06:00:29.034 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:29.034 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:29.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:00:29.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576774856, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:00:29.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:29.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:29.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:00:29.234 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:29.234 -07 000000424 INF: Image SNR check: start
17-03-18 06:00:29.234 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:29.244 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:29.244 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:29.244 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=127.59]
17-03-18 06:00:29.244 -07 000000424 INF: Autofocus start
17-03-18 06:00:29.244 -07 000000424 INF: MeasureProfile start
17-03-18 06:00:29.254 -07 000000424 INF: MeasureProfile done
17-03-18 06:00:29.254 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:00:29.254 -07 000000424 INF: Autofocus finished
17-03-18 06:00:29.444 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:29.444 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:00:29.444 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178468896106214. ----------
17-03-18 06:00:29.444 -07 000000610 INF: Cycle	144	Tile	1	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:29.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = True)
17-03-18 06:00:29.454 -07 000000610 INF: Z Motor: Moving to -0.171650 mm, started at -0.178469 mm, distance = 6.82 um
17-03-18 06:00:29.454 -07 000000610 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-18 06:00:29.454 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:00:29.464 -07 000000610 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:00:29.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:29.464 -07 000000012 INF: FPGA: Recv ZDACR 37497
17-03-18 06:00:29.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:29.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36012
17-03-18 06:00:29.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.634 -07 000000012 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:00:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.654 -07 000000012 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:00:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.664 -07 000000618 INF: FPGA: Recv ZSGSRD 36013
17-03-18 06:00:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.674 -07 000000618 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:00:29.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.684 -07 000000424 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:00:29.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.694 -07 000000424 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:00:29.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.704 -07 000000424 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:00:29.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.714 -07 000000424 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:00:29.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:29.724 -07 000000424 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:00:29.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:29.734 -07 000000424 INF: FPGA: Recv ZPIEZORD 31912
17-03-18 06:00:29.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:29.744 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.0 V.
17-03-18 06:00:29.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36011 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36011 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36002 (-170.7 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:00:29.744 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36011, posNoise = 4, negNoise = 9
17-03-18 06:00:29.744 -07 000000610 INF: Z Motor: After move to -0.171650, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:29.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 06:00:29.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:29.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:29.744 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:29.744 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:29.744 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:29.744 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:29.744 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:29.744 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:29.744 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:29.744 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:29.744 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:29.744 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:00:29.754 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:00:29.754 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:29.764 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:00:29.764 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:00:29.774 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:00:29.774 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:29.774 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:00:29.774 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:29.794 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:00:29.794 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-18 06:00:29.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37674 150\n [Camera]
17-03-18 06:00:29.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:30.444 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:30.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:30.444 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:30.444 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:30.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:30.444 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:30.444 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:30.444 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:00:30.454 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:30.454 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 06:00:30.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37674 835
17-03-18 06:00:30.784 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:30.844 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:00:30.844 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:00:30.844 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:30.854 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:00:30.854 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:00:30.854 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:30.854 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:00:30.854 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:00:30.854 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:00:30.864 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:00:31.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:31.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:31.004 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:31.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:31.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:31.124 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:31.124 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:31.124 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:00:31.124 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:31.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:00:31.194 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:00:31.194 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:31.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37674 150' command took 5 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-18 06:00:31.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:31.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171665655448089. ------
17-03-18 06:00:31.204 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:31.204 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17792 mm
17-03-18 06:00:31.204 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:31.204 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:31.204 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38867, sync = True, waitForSettling = False)
17-03-18 06:00:31.204 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:00:31.204 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:00:31.204 -07 000000444 INF: Z Motor: Moving to -0.177922 mm, started at -0.171666 mm, distance = -6.26 um
17-03-18 06:00:31.214 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:31.214 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:31.224 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:31.224 -07 000000618 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:00:31.234 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:00:31.234 -07 000000444 INF: FPGA: Xmit ZDACW 38867\n [Z Motor]
17-03-18 06:00:31.234 -07 000000501 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:31.234 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:31.234 -07 000000501 INF: Y Motor: Moving 1333 steps1
17-03-18 06:00:31.234 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:00:31.244 -07 000000444 INF: FPGA: 'ZDACW 38867' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 06:00:31.244 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:31.254 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:31.254 -07 000000618 INF: FPGA: Recv ZDACR 38867
17-03-18 06:00:31.264 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:31.264 -07 000000444 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:00:31.414 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:31.414 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:00:31.524 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:00:31.524 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:00:31.524 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:31.524 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:00:31.524 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:00:31.524 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:31.534 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:31.534 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 06:00:31.534 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:31.544 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:00:31.614 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:00:31.614 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:00:31.664 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:31.664 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:00:31.674 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:31.674 -07 000000501 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:31.674 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:00:31.674 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.833 mm, average velocity = 2.163 mm/sec
17-03-18 06:00:31.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:31.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:32.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.012614,
17-03-18 06:00:32.624 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:32.624 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:00:32.634 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:32.634 -07 000000501 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:32.664 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:32.664 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:00:32.664 -07 000000501 INF: Y Motor: Moved to 60.7324 after 1460 ms (table move)
17-03-18 06:00:32.664 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177922 mm (DAC = 38867)
17-03-18 06:00:32.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.674 -07 000000501 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:00:32.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:00:32.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.674 -07 000000501 INF: FPGA: Recv ZSGSRD 36977
17-03-18 06:00:32.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.684 -07 000000501 INF: FPGA: Recv ZSGSRD 36984
17-03-18 06:00:32.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.694 -07 000000501 INF: FPGA: Recv ZSGSRD 36986
17-03-18 06:00:32.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.704 -07 000000501 INF: FPGA: Recv ZSGSRD 36981
17-03-18 06:00:32.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.714 -07 000000501 INF: FPGA: Recv ZSGSRD 36979
17-03-18 06:00:32.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.724 -07 000000012 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:00:32.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.734 -07 000000629 INF: FPGA: Recv ZSGSRD 36988
17-03-18 06:00:32.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.744 -07 000000012 INF: FPGA: Recv ZSGSRD 36988
17-03-18 06:00:32.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:32.754 -07 000000629 INF: FPGA: Recv ZSGSRD 36988
17-03-18 06:00:32.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.764 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:32.764 -07 000000012 INF: FPGA: Recv ZPIEZORD 33197
17-03-18 06:00:32.774 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V.
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36984 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36985 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36977 (-177.0 uncal um), Max = 36988 (-177.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36984, posNoise = 4, negNoise = 7
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: After move to -0.177922, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:00:32.774 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:32.824 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 06:00:32.824 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:32.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:32.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:32.824 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:32.824 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:32.824 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:32.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:32.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:32.824 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:32.834 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:32.834 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:32.844 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 06:00:32.844 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:00:32.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:32.894 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:33.194 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:33.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:33.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:33.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576774856, 0x0, 559484976) start.
17-03-18 06:00:33.234 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:33.234 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:33.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:00:33.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576774856, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:00:33.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:33.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:33.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:00:33.334 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:33.334 -07 000000590 INF: Autofocus start
17-03-18 06:00:33.334 -07 000000590 INF: MeasureProfile start
17-03-18 06:00:33.334 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:33.344 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:33.344 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:33.344 -07 000000590 INF: MeasureProfile done
17-03-18 06:00:33.344 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:00:33.344 -07 000000590 INF: Autofocus finished
17-03-18 06:00:33.544 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:33.544 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:00:33.544 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177916413862022. ----------
17-03-18 06:00:33.544 -07 000000610 INF: Cycle	144	Tile	2	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:33.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37382, sync = True, waitForSettling = True)
17-03-18 06:00:33.554 -07 000000610 INF: Z Motor: Moving to -0.171124 mm, started at -0.177916 mm, distance = 6.79 um
17-03-18 06:00:33.554 -07 000000610 INF: FPGA: Xmit ZDACW 37382\n [Z Motor]
17-03-18 06:00:33.554 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:00:33.564 -07 000000610 INF: FPGA: 'ZDACW 37382' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:00:33.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:33.564 -07 000000501 INF: FPGA: Recv ZDACR 37382
17-03-18 06:00:33.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.724 -07 000000629 INF: FPGA: Recv ZSGSRD 35931
17-03-18 06:00:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.734 -07 000000012 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:00:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.744 -07 000000581 INF: FPGA: Recv ZSGSRD 35928
17-03-18 06:00:33.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.754 -07 000000579 INF: FPGA: Recv ZSGSRD 35930
17-03-18 06:00:33.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.764 -07 000000012 INF: FPGA: Recv ZSGSRD 35923
17-03-18 06:00:33.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.774 -07 000000625 INF: FPGA: Recv ZSGSRD 35924
17-03-18 06:00:33.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.784 -07 000000625 INF: FPGA: Recv ZSGSRD 35932
17-03-18 06:00:33.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.794 -07 000000625 INF: FPGA: Recv ZSGSRD 35927
17-03-18 06:00:33.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.804 -07 000000625 INF: FPGA: Recv ZSGSRD 35929
17-03-18 06:00:33.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:33.814 -07 000000625 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:00:33.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:33.824 -07 000000625 INF: FPGA: Recv ZPIEZORD 31774
17-03-18 06:00:33.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:33.834 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.2 V.
17-03-18 06:00:33.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35927 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35928 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35922 (-170.2 uncal um), Max = 35932 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:00:33.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35927, posNoise = 5, negNoise = 5
17-03-18 06:00:33.834 -07 000000610 INF: Z Motor: After move to -0.171124, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:33.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:00:33.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:33.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:33.834 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:33.834 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:33.834 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:33.834 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:33.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:33.834 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:33.834 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:33.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:33.834 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:33.834 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:33.834 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:00:33.844 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:33.844 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 06:00:33.844 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:33.854 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 06:00:33.854 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:00:33.854 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:00:33.854 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:00:33.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37559 150\n [Camera]
17-03-18 06:00:34.064 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:34.514 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:34.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:34.514 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:34.514 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:34.514 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:00:34.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:34.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:34.514 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:34.514 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:34.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:00:34.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37559 835
17-03-18 06:00:34.854 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:34.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:00:34.914 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:00:34.914 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:34.914 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:00:34.914 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:00:34.914 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:34.914 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:34.914 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:00:34.914 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:34.924 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:00:35.064 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:35.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:35.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:35.074 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:35.074 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:00:35.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:35.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:35.074 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:35.074 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:35.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:00:35.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:00:35.264 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:35.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37559 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-18 06:00:35.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:35.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171126021628181. ------
17-03-18 06:00:35.264 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:35.264 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17788 mm
17-03-18 06:00:35.264 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:35.274 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:35.274 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:00:35.274 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:00:35.274 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:35.274 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38858, sync = True, waitForSettling = False)
17-03-18 06:00:35.274 -07 000000591 INF: Z Motor: Moving to -0.177881 mm, started at -0.171126 mm, distance = -6.75 um
17-03-18 06:00:35.274 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:00:35.274 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:00:35.284 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:35.284 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:35.284 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:35.284 -07 000000012 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:00:35.284 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:35.294 -07 000000591 INF: FPGA: Xmit ZDACW 38858\n [Z Motor]
17-03-18 06:00:35.294 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:00:35.304 -07 000000591 INF: FPGA: 'ZDACW 38858' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:00:35.304 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:35.324 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:35.324 -07 000000512 INF: FPGA: Recv ZDACR 38858
17-03-18 06:00:35.334 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:00:35.334 -07 000000591 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 06:00:35.454 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:00:35.454 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:00:35.464 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:35.464 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:00:35.464 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:00:35.484 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:35.484 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:00:35.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:00:35.574 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 06:00:35.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:35.574 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:00:35.584 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 06:00:35.674 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:00:35.674 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:00:35.724 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:35.734 -07 000000512 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:00:35.734 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:00:35.734 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:35.734 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:00:35.734 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:00:36.684 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:36.684 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:00:36.694 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:36.694 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:36.724 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:36.724 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:00:36.724 -07 000000012 INF: Y Motor: Moved to 61.5630 after 1450 ms (table move)
17-03-18 06:00:36.724 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177881 mm (DAC = 38858)
17-03-18 06:00:36.724 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.724 -07 000000606 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:00:36.734 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:00:36.734 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.734 -07 000000512 INF: FPGA: Recv ZSGSRD 36989
17-03-18 06:00:36.744 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.744 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.744 -07 000000462 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:00:36.754 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.754 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.754 -07 000000608 INF: FPGA: Recv ZSGSRD 36979
17-03-18 06:00:36.764 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.764 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.764 -07 000000606 INF: FPGA: Recv ZSGSRD 36981
17-03-18 06:00:36.774 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36979
17-03-18 06:00:36.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.784 -07 000000579 INF: FPGA: Recv ZSGSRD 36979
17-03-18 06:00:36.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.794 -07 000000608 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:00:36.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.804 -07 000000591 INF: FPGA: Recv ZSGSRD 36980
17-03-18 06:00:36.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:36.814 -07 000000012 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:00:36.814 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:36.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:36.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.824 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:36.824 -07 000000462 INF: FPGA: Recv ZPIEZORD 33209
17-03-18 06:00:36.834 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36980 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36980 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36974 (-177.0 uncal um), Max = 36989 (-177.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36980, posNoise = 9, negNoise = 6
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: After move to -0.177881, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: Settle wait time = 1454 ms, measure time = 103 ms (allowed 150 ms), total time = 1557 ms
17-03-18 06:00:36.834 -07 000000581 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:36.884 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 06:00:36.884 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:36.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:36.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:36.884 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:36.884 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:36.884 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:36.884 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:36.884 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:36.884 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:36.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:36.894 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:36.904 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:00:36.904 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:00:36.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:36.954 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:37.254 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:37.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:37.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:37.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:00:37.294 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:37.294 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:37.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:00:37.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:00:37.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:37.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:37.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:00:37.394 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:37.394 -07 000000590 INF: Autofocus start
17-03-18 06:00:37.394 -07 000000590 INF: MeasureProfile start
17-03-18 06:00:37.394 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:37.404 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:00:37.404 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:37.404 -07 000000590 INF: MeasureProfile done
17-03-18 06:00:37.404 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:00:37.404 -07 000000590 INF: Autofocus finished
17-03-18 06:00:37.604 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:37.604 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:00:37.604 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177890717013455. ----------
17-03-18 06:00:37.604 -07 000000610 INF: Cycle	144	Tile	3	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:37.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37372, sync = True, waitForSettling = True)
17-03-18 06:00:37.614 -07 000000610 INF: Z Motor: Moving to -0.171078 mm, started at -0.177891 mm, distance = 6.81 um
17-03-18 06:00:37.614 -07 000000610 INF: FPGA: Xmit ZDACW 37372\n [Z Motor]
17-03-18 06:00:37.614 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:00:37.624 -07 000000610 INF: FPGA: 'ZDACW 37372' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:37.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:37.624 -07 000000424 INF: FPGA: Recv ZDACR 37372
17-03-18 06:00:37.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.784 -07 000000424 INF: FPGA: Recv ZSGSRD 35925
17-03-18 06:00:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.794 -07 000000591 INF: FPGA: Recv ZSGSRD 35920
17-03-18 06:00:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.804 -07 000000590 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:00:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.814 -07 000000444 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:00:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.824 -07 000000444 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:00:37.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:00:37.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35925
17-03-18 06:00:37.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.864 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.989471,
17-03-18 06:00:37.864 -07 000000606 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:00:37.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:37.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:00:37.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:37.894 -07 000000501 INF: FPGA: Recv ZSGSRD 35920
17-03-18 06:00:37.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:37.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:37.904 -07 000000590 INF: FPGA: Recv ZPIEZORD 31823
17-03-18 06:00:37.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:37.914 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.0 V.
17-03-18 06:00:37.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35921 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35921 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:00:37.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35921, posNoise = 4, negNoise = 5
17-03-18 06:00:37.914 -07 000000610 INF: Z Motor: After move to -0.171078, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:37.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-18 06:00:37.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:37.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:37.914 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:37.914 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:37.914 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:37.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:37.914 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:37.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:37.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:37.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:37.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:37.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:37.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:37.924 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:37.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:00:37.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:37.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:00:37.934 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:00:37.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:00:37.934 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:37.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37549 150\n [Camera]
17-03-18 06:00:38.134 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:38.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:38.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:38.594 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:38.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:38.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:38.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:38.604 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:38.604 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:00:38.604 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:38.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:00:38.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37549 835
17-03-18 06:00:38.934 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:38.984 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:00:38.984 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:00:38.984 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:38.984 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:00:38.984 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:00:38.984 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:38.984 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:00:38.984 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:00:38.984 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:38.994 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:00:39.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:39.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:39.144 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:39.154 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:39.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:39.154 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:39.154 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:39.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:00:39.164 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:39.164 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:00:39.344 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:00:39.344 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:39.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37549 150' command took 2 ms to send, 1390 ms to get response, and 1406 ms overall
17-03-18 06:00:39.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:39.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.17108747635533. ------
17-03-18 06:00:39.344 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:39.344 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17738 mm
17-03-18 06:00:39.344 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:39.354 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:39.354 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:00:39.354 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:39.354 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:00:39.354 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:00:39.354 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38749, sync = True, waitForSettling = False)
17-03-18 06:00:39.354 -07 000000618 INF: Z Motor: Moving to -0.177382 mm, started at -0.171087 mm, distance = -6.29 um
17-03-18 06:00:39.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:39.364 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:00:39.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:00:39.374 -07 000000512 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:39.374 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:39.374 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:00:39.374 -07 000000618 INF: FPGA: Xmit ZDACW 38749\n [Z Motor]
17-03-18 06:00:39.374 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:00:39.384 -07 000000618 INF: FPGA: 'ZDACW 38749' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:00:39.384 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:39.384 -07 000000606 INF: FPGA: Recv ZDACR 38749
17-03-18 06:00:39.394 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:39.394 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:00:39.394 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:39.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:00:39.544 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:00:39.544 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:39.544 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:00:39.544 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:00:39.544 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:39.554 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:39.554 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:00:39.554 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:00:39.554 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:39.554 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:00:39.554 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:00:39.764 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 06:00:39.764 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:00:39.814 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:39.824 -07 000000501 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:00:39.824 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:00:39.824 -07 000000512 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:39.824 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:00:39.824 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:00:40.774 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:40.774 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:00:40.784 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.784 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:40.814 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:40.814 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:00:40.814 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1459 ms (table move)
17-03-18 06:00:40.814 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177382 mm (DAC = 38749)
17-03-18 06:00:40.814 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.814 -07 000000606 INF: FPGA: Recv ZSGSRD 36903
17-03-18 06:00:40.824 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:00:40.824 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36898
17-03-18 06:00:40.834 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.834 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.834 -07 000000012 INF: FPGA: Recv ZSGSRD 36893
17-03-18 06:00:40.844 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.844 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.844 -07 000000561 INF: FPGA: Recv ZSGSRD 36903
17-03-18 06:00:40.854 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.854 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.854 -07 000000501 INF: FPGA: Recv ZSGSRD 36894
17-03-18 06:00:40.864 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.864 -07 000000590 INF: FPGA: Recv ZSGSRD 36901
17-03-18 06:00:40.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.874 -07 000000012 INF: FPGA: Recv ZSGSRD 36898
17-03-18 06:00:40.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.884 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.884 -07 000000501 INF: FPGA: Recv ZSGSRD 36898
17-03-18 06:00:40.894 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.894 -07 000000618 INF: FPGA: Recv ZSGSRD 36908
17-03-18 06:00:40.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:40.904 -07 000000590 INF: FPGA: Recv ZSGSRD 36899
17-03-18 06:00:40.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.914 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:40.914 -07 000000462 INF: FPGA: Recv ZPIEZORD 33120
17-03-18 06:00:40.924 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.4 V.
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36900 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36893 (-176.4 uncal um), Max = 36908 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36900, posNoise = 8, negNoise = 7
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: After move to -0.177382, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:00:40.924 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:40.974 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 06:00:40.974 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:40.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:40.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:40.974 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:40.974 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:40.974 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:40.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:40.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:40.974 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:40.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:40.984 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:40.994 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:00:40.994 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:00:40.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:41.044 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:41.344 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:41.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:41.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:41.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:00:41.384 -07 000000561 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:00:41.384 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:41.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 386 ms to get response, and 387 ms overall
17-03-18 06:00:41.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:00:41.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:41.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:41.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:00:41.484 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:41.484 -07 000000590 INF: Autofocus start
17-03-18 06:00:41.484 -07 000000590 INF: MeasureProfile start
17-03-18 06:00:41.494 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:41.494 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:00:41.494 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:41.504 -07 000000590 INF: MeasureProfile done
17-03-18 06:00:41.504 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:00:41.504 -07 000000590 INF: Autofocus finished
17-03-18 06:00:41.694 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:41.694 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:00:41.694 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177376780042114. ----------
17-03-18 06:00:41.704 -07 000000610 INF: Cycle	144	Tile	4	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:41.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37282, sync = True, waitForSettling = True)
17-03-18 06:00:41.704 -07 000000610 INF: Z Motor: Moving to -0.170666 mm, started at -0.177377 mm, distance = 6.71 um
17-03-18 06:00:41.704 -07 000000610 INF: FPGA: Xmit ZDACW 37282\n [Z Motor]
17-03-18 06:00:41.704 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:00:41.714 -07 000000610 INF: FPGA: 'ZDACW 37282' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:41.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:41.714 -07 000000590 INF: FPGA: Recv ZDACR 37282
17-03-18 06:00:41.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:41.814 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:41.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.874 -07 000000462 INF: FPGA: Recv ZSGSRD 35855
17-03-18 06:00:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35853
17-03-18 06:00:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.894 -07 000000606 INF: FPGA: Recv ZSGSRD 35854
17-03-18 06:00:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.904 -07 000000606 INF: FPGA: Recv ZSGSRD 35856
17-03-18 06:00:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.914 -07 000000606 INF: FPGA: Recv ZSGSRD 35860
17-03-18 06:00:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35856
17-03-18 06:00:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35858
17-03-18 06:00:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.944 -07 000000606 INF: FPGA: Recv ZSGSRD 35857
17-03-18 06:00:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.954 -07 000000462 INF: FPGA: Recv ZSGSRD 35859
17-03-18 06:00:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:41.964 -07 000000581 INF: FPGA: Recv ZSGSRD 35851
17-03-18 06:00:41.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:41.974 -07 000000462 INF: FPGA: Recv ZPIEZORD 31716
17-03-18 06:00:41.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:41.984 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -9.1 V.
17-03-18 06:00:41.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35856 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35856 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35851 (-169.8 uncal um), Max = 35860 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:00:41.984 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35856, posNoise = 4, negNoise = 5
17-03-18 06:00:41.984 -07 000000610 INF: Z Motor: After move to -0.170666, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:41.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:00:41.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:41.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:41.984 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:41.984 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:41.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:41.984 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:41.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:41.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:41.984 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:41.984 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:41.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:41.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:41.984 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:00:41.994 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:41.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:00:41.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:42.004 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:00:42.004 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:42.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:00:42.004 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:00:42.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37459 150\n [Camera]
17-03-18 06:00:42.204 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:42.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:42.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:42.654 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:42.654 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:42.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:00:42.654 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:42.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:42.654 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:42.654 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:42.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:00:42.844 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37459 835
17-03-18 06:00:42.994 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:43.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:00:43.024 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:00:43.034 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:43.034 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:43.034 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:00:43.034 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:00:43.034 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:43.034 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:43.034 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:00:43.044 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:00:43.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:43.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:43.214 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:43.214 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:43.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:00:43.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:43.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:43.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:43.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:43.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:00:43.264 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.98264,
17-03-18 06:00:43.404 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:00:43.404 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:43.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37459 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:00:43.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:43.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170669902566116. ------
17-03-18 06:00:43.404 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:43.404 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17727 mm
17-03-18 06:00:43.404 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:43.414 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:43.414 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:00:43.414 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38724, sync = True, waitForSettling = False)
17-03-18 06:00:43.414 -07 000000581 INF: Z Motor: Moving to -0.177267 mm, started at -0.170670 mm, distance = -6.60 um
17-03-18 06:00:43.414 -07 000000581 INF: FPGA: Xmit ZDACW 38724\n [Z Motor]
17-03-18 06:00:43.414 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:00:43.414 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 06:00:43.414 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:00:43.424 -07 000000581 INF: FPGA: 'ZDACW 38724' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:43.424 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:43.424 -07 000000512 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:00:43.434 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:00:43.434 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:43.554 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:43.554 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:43.554 -07 000000462 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:00:43.564 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:43.564 -07 000000012 INF: FPGA: Recv ZDACR 38724
17-03-18 06:00:43.574 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:43.574 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 149 ms overall
17-03-18 06:00:43.574 -07 000000581 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-18 06:00:43.614 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:00:43.614 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:00:43.614 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:43.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:00:43.624 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:00:43.624 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:43.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:43.624 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:00:43.624 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:00:43.634 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:00:43.754 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:43.754 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 125 ms to send, 198 ms to get response, and 344 ms overall
17-03-18 06:00:43.944 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:00:43.944 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:00:43.994 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:44.004 -07 000000512 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:00:44.014 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:44.014 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:44.014 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:00:44.014 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec
17-03-18 06:00:44.964 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:44.964 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:00:44.974 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:44.974 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:45.004 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:45.004 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:00:45.004 -07 000000462 INF: Y Motor: Moved to 63.2227 after 1589 ms (table move)
17-03-18 06:00:45.004 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177267 mm (DAC = 38724)
17-03-18 06:00:45.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.004 -07 000000462 INF: FPGA: Recv ZSGSRD 36889
17-03-18 06:00:45.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:00:45.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.014 -07 000000444 INF: FPGA: Recv ZSGSRD 36889
17-03-18 06:00:45.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.024 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.024 -07 000000561 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:00:45.034 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.034 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.034 -07 000000444 INF: FPGA: Recv ZSGSRD 36881
17-03-18 06:00:45.044 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.044 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.044 -07 000000012 INF: FPGA: Recv ZSGSRD 36876
17-03-18 06:00:45.054 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.054 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.054 -07 000000444 INF: FPGA: Recv ZSGSRD 36880
17-03-18 06:00:45.064 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.064 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.064 -07 000000012 INF: FPGA: Recv ZSGSRD 36878
17-03-18 06:00:45.074 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.074 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.074 -07 000000561 INF: FPGA: Recv ZSGSRD 36883
17-03-18 06:00:45.084 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.084 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.084 -07 000000512 INF: FPGA: Recv ZSGSRD 36883
17-03-18 06:00:45.094 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.094 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:45.094 -07 000000606 INF: FPGA: Recv ZSGSRD 36891
17-03-18 06:00:45.104 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.104 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:45.104 -07 000000512 INF: FPGA: Recv ZPIEZORD 33101
17-03-18 06:00:45.114 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.4 V.
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36883 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36883 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36876 (-176.3 uncal um), Max = 36891 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36883, posNoise = 8, negNoise = 7
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: After move to -0.177267, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: Settle wait time = 1593 ms, measure time = 104 ms (allowed 150 ms), total time = 1697 ms
17-03-18 06:00:45.114 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:45.164 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 06:00:45.164 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:45.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:45.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:45.164 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:45.164 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:45.164 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:45.164 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:45.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:45.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:45.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:00:45.174 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:45.184 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:00:45.184 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:00:45.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:45.224 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:45.524 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:45.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:45.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:45.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:00:45.564 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:45.564 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:45.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:00:45.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:00:45.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:45.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:45.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:00:45.664 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:45.664 -07 000000501 INF: Autofocus start
17-03-18 06:00:45.664 -07 000000501 INF: MeasureProfile start
17-03-18 06:00:45.664 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:45.674 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:45.674 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:45.674 -07 000000501 INF: MeasureProfile done
17-03-18 06:00:45.674 -07 000000501 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 06:00:45.674 -07 000000501 INF: Autofocus finished
17-03-18 06:00:45.874 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:45.874 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:00:45.874 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.177267568435704. ----------
17-03-18 06:00:45.884 -07 000000610 INF: Cycle	144	Tile	5	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:45.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37130, sync = True, waitForSettling = True)
17-03-18 06:00:45.884 -07 000000610 INF: Z Motor: Moving to -0.169970 mm, started at -0.177268 mm, distance = 7.30 um
17-03-18 06:00:45.884 -07 000000610 INF: FPGA: Xmit ZDACW 37130\n [Z Motor]
17-03-18 06:00:45.884 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:00:45.894 -07 000000610 INF: FPGA: 'ZDACW 37130' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:45.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:45.894 -07 000000444 INF: FPGA: Recv ZDACR 37130
17-03-18 06:00:45.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:45.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:46.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.054 -07 000000618 INF: FPGA: Recv ZSGSRD 35751
17-03-18 06:00:46.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:46.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35756
17-03-18 06:00:46.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.084 -07 000000581 INF: FPGA: Recv ZSGSRD 35743
17-03-18 06:00:46.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:46.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.114 -07 000000561 INF: FPGA: Recv ZSGSRD 35746
17-03-18 06:00:46.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:00:46.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.134 -07 000000581 INF: FPGA: Recv ZSGSRD 35752
17-03-18 06:00:46.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:46.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.144 -07 000000581 INF: FPGA: Recv ZSGSRD 35751
17-03-18 06:00:46.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.154 -07 000000581 INF: FPGA: Recv ZSGSRD 35745
17-03-18 06:00:46.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.164 -07 000000444 INF: FPGA: Recv ZSGSRD 35749
17-03-18 06:00:46.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.174 -07 000000581 INF: FPGA: Recv ZSGSRD 35747
17-03-18 06:00:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:46.184 -07 000000581 INF: FPGA: Recv ZSGSRD 35747
17-03-18 06:00:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:46.194 -07 000000512 INF: FPGA: Recv ZPIEZORD 31585
17-03-18 06:00:46.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:46.204 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.2 V.
17-03-18 06:00:46.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35749 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35756 (-169.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:00:46.204 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35749, posNoise = 7, negNoise = 6
17-03-18 06:00:46.204 -07 000000610 INF: Z Motor: After move to -0.169970, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:46.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 06:00:46.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:46.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:46.204 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:46.204 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:46.204 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:46.204 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:46.204 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:46.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:46.204 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:46.204 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:46.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:46.204 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:46.214 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:00:46.214 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:46.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:46.214 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:46.224 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:00:46.224 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:46.224 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:00:46.224 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:46.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37307 150\n [Camera]
17-03-18 06:00:46.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:46.814 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:46.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:46.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:46.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:46.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:46.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:46.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:46.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:46.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:00:46.884 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:46.884 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:46.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:00:47.064 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37307 835
17-03-18 06:00:47.214 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:47.274 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:00:47.274 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:00:47.274 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:47.274 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:47.274 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:00:47.284 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:00:47.284 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:00:47.284 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:47.284 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:47.294 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:00:47.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:47.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:47.434 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:47.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:47.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:47.434 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:47.444 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:47.444 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:00:47.444 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:47.444 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:00:47.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:00:47.624 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:47.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37307 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-18 06:00:47.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:47.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.169982511866947. ------
17-03-18 06:00:47.744 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:47.744 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17629 mm
17-03-18 06:00:47.744 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:47.754 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:47.754 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:00:47.754 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:47.754 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38510, sync = True, waitForSettling = False)
17-03-18 06:00:47.754 -07 000000501 INF: Z Motor: Moving to -0.176287 mm, started at -0.169983 mm, distance = -6.30 um
17-03-18 06:00:47.754 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:00:47.754 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:00:47.764 -07 000000501 INF: FPGA: Xmit ZDACW 38510\n [Z Motor]
17-03-18 06:00:47.764 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:00:47.774 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:47.774 -07 000000501 INF: FPGA: 'ZDACW 38510' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:00:47.774 -07 000000462 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:00:47.784 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:00:47.784 -07 000000590 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:47.784 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:47.784 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:47.784 -07 000000590 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:00:47.784 -07 000000581 INF: FPGA: Recv ZDACR 38510
17-03-18 06:00:47.794 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:47.794 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:00:47.794 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:47.844 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:00:47.844 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:00:47.844 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:47.844 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:00:47.844 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:00:47.844 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:47.844 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:47.844 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:47.844 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:00:47.854 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:00:47.954 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:47.954 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:00:48.164 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:00:48.164 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:00:48.214 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:48.224 -07 000000444 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:00:48.224 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:00:48.224 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:48.224 -07 000000590 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:00:48.224 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-18 06:00:48.624 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.979922,
17-03-18 06:00:49.174 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:49.174 -07 000000561 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:00:49.184 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:49.184 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:49.214 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:49.214 -07 000000590 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:00:49.214 -07 000000590 INF: Y Motor: Moved to 64.0562 after 1458 ms (table move)
17-03-18 06:00:49.214 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176287 mm (DAC = 38510)
17-03-18 06:00:49.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36727
17-03-18 06:00:49.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:00:49.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.224 -07 000000606 INF: FPGA: Recv ZSGSRD 36730
17-03-18 06:00:49.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.234 -07 000000606 INF: FPGA: Recv ZSGSRD 36732
17-03-18 06:00:49.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.244 -07 000000590 INF: FPGA: Recv ZSGSRD 36730
17-03-18 06:00:49.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.254 -07 000000590 INF: FPGA: Recv ZSGSRD 36724
17-03-18 06:00:49.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.264 -07 000000561 INF: FPGA: Recv ZSGSRD 36730
17-03-18 06:00:49.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.274 -07 000000444 INF: FPGA: Recv ZSGSRD 36734
17-03-18 06:00:49.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.284 -07 000000480 INF: FPGA: Recv ZSGSRD 36727
17-03-18 06:00:49.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36734
17-03-18 06:00:49.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:49.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36733
17-03-18 06:00:49.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.314 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:49.314 -07 000000561 INF: FPGA: Recv ZPIEZORD 32912
17-03-18 06:00:49.324 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.5 V.
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36730 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36730 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36724 (-175.4 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36730, posNoise = 4, negNoise = 6
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: After move to -0.176287, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:00:49.324 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:49.374 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 06:00:49.374 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:49.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:49.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:49.374 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:49.374 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:49.374 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:49.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:49.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:49.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:49.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:00:49.374 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:49.384 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:00:49.384 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:00:49.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:49.434 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:49.734 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:49.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:49.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:49.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:00:49.774 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:49.774 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:49.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:00:49.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:00:49.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:49.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:00:49.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:00:49.874 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:49.874 -07 000000590 INF: Autofocus start
17-03-18 06:00:49.874 -07 000000590 INF: MeasureProfile start
17-03-18 06:00:49.874 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:49.884 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:49.884 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:49.894 -07 000000590 INF: MeasureProfile done
17-03-18 06:00:49.894 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:00:49.894 -07 000000590 INF: Autofocus finished
17-03-18 06:00:50.084 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:50.084 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 204 ms overall
17-03-18 06:00:50.094 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176284663978015. ----------
17-03-18 06:00:50.094 -07 000000610 INF: Cycle	144	Tile	6	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:50.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37043, sync = True, waitForSettling = True)
17-03-18 06:00:50.094 -07 000000610 INF: Z Motor: Moving to -0.169572 mm, started at -0.176285 mm, distance = 6.71 um
17-03-18 06:00:50.094 -07 000000610 INF: FPGA: Xmit ZDACW 37043\n [Z Motor]
17-03-18 06:00:50.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:00:50.104 -07 000000610 INF: FPGA: 'ZDACW 37043' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:50.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:50.104 -07 000000444 INF: FPGA: Recv ZDACR 37043
17-03-18 06:00:50.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:50.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.264 -07 000000581 INF: FPGA: Recv ZSGSRD 35694
17-03-18 06:00:50.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.274 -07 000000501 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:00:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35685
17-03-18 06:00:50.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35683
17-03-18 06:00:50.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35690
17-03-18 06:00:50.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.344 -07 000000512 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:00:50.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:00:50.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:00:50.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:00:50.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.364 -07 000000480 INF: FPGA: Recv ZSGSRD 35677
17-03-18 06:00:50.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35683
17-03-18 06:00:50.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:50.384 -07 000000480 INF: FPGA: Recv ZSGSRD 35690
17-03-18 06:00:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:50.394 -07 000000618 INF: FPGA: Recv ZPIEZORD 31519
17-03-18 06:00:50.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:50.404 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-18 06:00:50.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35687 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35688 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35694 (-168.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:00:50.404 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35687, posNoise = 7, negNoise = 10
17-03-18 06:00:50.404 -07 000000610 INF: Z Motor: After move to -0.169572, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:50.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-18 06:00:50.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:50.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:50.404 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:50.404 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:50.404 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:50.404 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:50.404 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:50.404 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:50.404 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:50.404 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:50.404 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:50.404 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:50.414 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:50.414 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:00:50.414 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:50.414 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:50.424 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:00:50.424 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:00:50.424 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:00:50.424 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:00:50.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37219 150\n [Camera]
17-03-18 06:00:50.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:51.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:51.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:51.074 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:51.074 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:51.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:51.074 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:51.084 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:51.084 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:00:51.084 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:51.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:00:51.264 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37219 835
17-03-18 06:00:51.414 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:51.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:00:51.474 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:00:51.474 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:51.474 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:00:51.474 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:00:51.474 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:51.474 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:51.474 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:00:51.474 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:51.484 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:00:51.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:51.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:51.634 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:51.634 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:51.634 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 06:00:51.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:51.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:51.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:51.644 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:51.644 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 06:00:51.814 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:51.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:51.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:00:51.824 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:51.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37219 150' command took 2 ms to send, 1396 ms to get response, and 1401 ms overall
17-03-18 06:00:51.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:51.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169584210714158. ------
17-03-18 06:00:51.834 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17597 mm
17-03-18 06:00:51.834 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:51.834 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:51.834 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:00:51.834 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38440, sync = True, waitForSettling = False)
17-03-18 06:00:51.834 -07 000000512 INF: Z Motor: Moving to -0.175967 mm, started at -0.169584 mm, distance = -6.38 um
17-03-18 06:00:51.834 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:00:51.834 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:51.844 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:51.844 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:51.844 -07 000000606 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:00:51.854 -07 000000512 INF: FPGA: Xmit ZDACW 38440\n [Z Motor]
17-03-18 06:00:51.854 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:00:51.854 -07 000000480 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:51.854 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:51.854 -07 000000480 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:00:51.854 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:00:51.864 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:51.864 -07 000000512 INF: FPGA: 'ZDACW 38440' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:00:51.874 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:51.884 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:51.884 -07 000000608 INF: FPGA: Recv ZDACR 38440
17-03-18 06:00:51.894 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:00:51.894 -07 000000512 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:00:52.024 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:00:52.024 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:00:52.024 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:52.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:00:52.024 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:00:52.024 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:52.034 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:52.034 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:00:52.034 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:00:52.034 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:00:52.064 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:52.064 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:00:52.244 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:00:52.244 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:00:52.304 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:52.304 -07 000000625 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:00:52.314 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:52.314 -07 000000480 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:52.314 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:00:52.314 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 06:00:53.264 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:53.264 -07 000000462 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:00:53.274 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:53.274 -07 000000480 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:53.304 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:53.304 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:00:53.304 -07 000000480 INF: Y Motor: Moved to 64.8779 after 1467 ms (table move)
17-03-18 06:00:53.304 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175967 mm (DAC = 38440)
17-03-18 06:00:53.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.314 -07 000000618 INF: FPGA: Recv ZSGSRD 36677
17-03-18 06:00:53.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:00:53.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.314 -07 000000444 INF: FPGA: Recv ZSGSRD 36684
17-03-18 06:00:53.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.324 -07 000000606 INF: FPGA: Recv ZSGSRD 36681
17-03-18 06:00:53.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.334 -07 000000579 INF: FPGA: Recv ZSGSRD 36682
17-03-18 06:00:53.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.344 -07 000000561 INF: FPGA: Recv ZSGSRD 36683
17-03-18 06:00:53.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.354 -07 000000606 INF: FPGA: Recv ZSGSRD 36676
17-03-18 06:00:53.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36682
17-03-18 06:00:53.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.374 -07 000000606 INF: FPGA: Recv ZSGSRD 36681
17-03-18 06:00:53.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.384 -07 000000512 INF: FPGA: Recv ZSGSRD 36685
17-03-18 06:00:53.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:53.394 -07 000000608 INF: FPGA: Recv ZSGSRD 36685
17-03-18 06:00:53.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.404 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:53.404 -07 000000606 INF: FPGA: Recv ZPIEZORD 32812
17-03-18 06:00:53.414 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.6 V.
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36676 (-175.0 uncal um), Max = 36685 (-175.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 3, negNoise = 6
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: After move to -0.175967, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: Settle wait time = 1472 ms, measure time = 103 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:00:53.414 -07 000000590 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:53.464 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:00:53.464 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:53.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:53.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:53.464 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:53.464 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:53.464 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:53.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:53.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:53.464 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:53.474 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:53.474 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:53.484 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:00:53.484 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:00:53.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:53.534 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:53.834 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:53.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:53.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:53.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:00:53.874 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:53.874 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:53.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:00:53.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:00:53.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:53.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:00:53.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:00:53.974 -07 000000608 INF: Autofocus start
17-03-18 06:00:53.974 -07 000000608 INF: MeasureProfile start
17-03-18 06:00:53.984 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.979922,
17-03-18 06:00:53.994 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:53.994 -07 000000608 INF: MeasureProfile done
17-03-18 06:00:53.994 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:00:53.994 -07 000000608 INF: Autofocus finished
17-03-18 06:00:53.994 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:54.004 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:00:54.024 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:54.224 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:54.224 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:00:54.224 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.17597630179521. ----------
17-03-18 06:00:54.224 -07 000000610 INF: Cycle	144	Tile	7	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:54.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36955, sync = True, waitForSettling = True)
17-03-18 06:00:54.234 -07 000000610 INF: Z Motor: Moving to -0.169169 mm, started at -0.175976 mm, distance = 6.81 um
17-03-18 06:00:54.234 -07 000000610 INF: FPGA: Xmit ZDACW 36955\n [Z Motor]
17-03-18 06:00:54.234 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:00:54.244 -07 000000610 INF: FPGA: 'ZDACW 36955' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:00:54.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:54.244 -07 000000606 INF: FPGA: Recv ZDACR 36955
17-03-18 06:00:54.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:54.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35621
17-03-18 06:00:54.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:54.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35627
17-03-18 06:00:54.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.424 -07 000000618 INF: FPGA: Recv ZSGSRD 35625
17-03-18 06:00:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35621
17-03-18 06:00:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35621
17-03-18 06:00:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35625
17-03-18 06:00:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.464 -07 000000590 INF: FPGA: Recv ZSGSRD 35627
17-03-18 06:00:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35624
17-03-18 06:00:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35623
17-03-18 06:00:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:54.494 -07 000000618 INF: FPGA: Recv ZSGSRD 35619
17-03-18 06:00:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:54.504 -07 000000579 INF: FPGA: Recv ZPIEZORD 31443
17-03-18 06:00:54.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:54.514 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.2 V.
17-03-18 06:00:54.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35623 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35624 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35619 (-168.3 uncal um), Max = 35627 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:00:54.514 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35623, posNoise = 4, negNoise = 4
17-03-18 06:00:54.514 -07 000000610 INF: Z Motor: After move to -0.169169, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:54.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:00:54.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:54.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:54.514 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:54.514 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:54.514 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:54.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:54.514 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:54.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:54.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:00:54.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:54.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:00:54.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:54.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:00:54.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:54.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:00:54.524 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:54.534 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:00:54.534 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:54.534 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:00:54.534 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:00:54.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37132 150\n [Camera]
17-03-18 06:00:54.734 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:55.184 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 643
17-03-18 06:00:55.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 643
17-03-18 06:00:55.184 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:55.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:55.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:00:55.194 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 643
17-03-18 06:00:55.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 643
17-03-18 06:00:55.194 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:55.194 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:55.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:00:55.374 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37132 835
17-03-18 06:00:55.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:55.564 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:00:55.564 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:00:55.564 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:55.564 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:00:55.564 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:00:55.564 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:55.574 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:00:55.574 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:00:55.574 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:00:55.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:00:55.744 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:55.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:55.744 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:55.744 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:55.744 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:00:55.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:55.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:55.744 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:55.744 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:55.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:00:55.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:00:55.934 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:00:55.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37132 150' command took 2 ms to send, 1395 ms to get response, and 1401 ms overall
17-03-18 06:00:55.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:00:55.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169173061137086. ------
17-03-18 06:00:55.944 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:55.944 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17588 mm
17-03-18 06:00:55.944 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:00:56.064 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:56.064 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 06:00:56.064 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38421, sync = True, waitForSettling = False)
17-03-18 06:00:56.064 -07 000000581 INF: Z Motor: Moving to -0.175880 mm, started at -0.169173 mm, distance = -6.71 um
17-03-18 06:00:56.064 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:00:56.064 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:00:56.064 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:00:56.074 -07 000000581 INF: FPGA: Xmit ZDACW 38421\n [Z Motor]
17-03-18 06:00:56.074 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:00:56.084 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:56.084 -07 000000581 INF: FPGA: 'ZDACW 38421' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:00:56.084 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:00:56.094 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:00:56.094 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:56.094 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:56.094 -07 000000579 INF: FPGA: Recv ZDACR 38421
17-03-18 06:00:56.094 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:00:56.094 -07 000000591 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:00:56.104 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:00:56.104 -07 000000581 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:00:56.104 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:00:56.144 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:00:56.144 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:00:56.144 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:56.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:00:56.144 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:00:56.144 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:56.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:56.154 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:00:56.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:00:56.154 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:00:56.274 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:00:56.274 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 06:00:56.474 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:00:56.474 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:00:56.524 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:56.534 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:00:56.534 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:00:56.534 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:56.534 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:00:56.534 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.223 mm/sec
17-03-18 06:00:56.814 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:00:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:00:57.484 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:00:57.484 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:00:57.494 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.494 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:00:57.524 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:00:57.524 -07 000000591 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:00:57.524 -07 000000591 INF: Y Motor: Moved to 65.7134 after 1459 ms (table move)
17-03-18 06:00:57.534 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175880 mm (DAC = 38421)
17-03-18 06:00:57.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.534 -07 000000581 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:00:57.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:00:57.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.544 -07 000000501 INF: FPGA: Recv ZSGSRD 36666
17-03-18 06:00:57.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.554 -07 000000618 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:00:57.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.564 -07 000000579 INF: FPGA: Recv ZSGSRD 36659
17-03-18 06:00:57.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.574 -07 000000591 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:00:57.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.584 -07 000000480 INF: FPGA: Recv ZSGSRD 36668
17-03-18 06:00:57.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.594 -07 000000581 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:00:57.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.604 -07 000000480 INF: FPGA: Recv ZSGSRD 36674
17-03-18 06:00:57.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.614 -07 000000618 INF: FPGA: Recv ZSGSRD 36671
17-03-18 06:00:57.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:57.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36673
17-03-18 06:00:57.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.634 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:57.634 -07 000000591 INF: FPGA: Recv ZPIEZORD 32818
17-03-18 06:00:57.644 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.5 V.
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36668 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36668 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36659 (-174.9 uncal um), Max = 36674 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36668, posNoise = 6, negNoise = 9
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: After move to -0.175880, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 06:00:57.644 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:00:57.694 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1748 ms
17-03-18 06:00:57.694 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:00:57.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:57.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:57.694 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:57.694 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:00:57.694 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:57.704 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:57.704 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:57.704 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:00:57.704 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:00:57.704 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:00:57.714 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:00:57.714 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:00:57.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:00:57.754 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:00:58.054 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:00:58.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:00:58.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:00:58.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:00:58.094 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:00:58.094 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:00:58.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:00:58.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:00:58.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:58.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:00:58.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:00:58.194 -07 000000618 INF: Autofocus start
17-03-18 06:00:58.194 -07 000000618 INF: MeasureProfile start
17-03-18 06:00:58.194 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:00:58.194 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:00:58.204 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:00:58.204 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:00:58.214 -07 000000618 INF: MeasureProfile done
17-03-18 06:00:58.214 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:00:58.214 -07 000000618 INF: Autofocus finished
17-03-18 06:00:58.404 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:00:58.404 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:00:58.404 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175886362825226. ----------
17-03-18 06:00:58.414 -07 000000610 INF: Cycle	144	Tile	8	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:00:58.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36936, sync = True, waitForSettling = True)
17-03-18 06:00:58.414 -07 000000610 INF: Z Motor: Moving to -0.169082 mm, started at -0.175886 mm, distance = 6.80 um
17-03-18 06:00:58.414 -07 000000610 INF: FPGA: Xmit ZDACW 36936\n [Z Motor]
17-03-18 06:00:58.414 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:00:58.424 -07 000000610 INF: FPGA: 'ZDACW 36936' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:00:58.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:00:58.424 -07 000000501 INF: FPGA: Recv ZDACR 36936
17-03-18 06:00:58.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:00:58.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.584 -07 000000444 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:00:58.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:00:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.594 -07 000000618 INF: FPGA: Recv ZSGSRD 35609
17-03-18 06:00:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:00:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.614 -07 000000590 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:00:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.624 -07 000000581 INF: FPGA: Recv ZSGSRD 35617
17-03-18 06:00:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35608
17-03-18 06:00:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.644 -07 000000591 INF: FPGA: Recv ZSGSRD 35607
17-03-18 06:00:58.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.654 -07 000000591 INF: FPGA: Recv ZSGSRD 35610
17-03-18 06:00:58.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.664 -07 000000591 INF: FPGA: Recv ZSGSRD 35610
17-03-18 06:00:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:00:58.674 -07 000000501 INF: FPGA: Recv ZSGSRD 35610
17-03-18 06:00:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:00:58.684 -07 000000581 INF: FPGA: Recv ZPIEZORD 31435
17-03-18 06:00:58.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:00:58.694 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.2 V.
17-03-18 06:00:58.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:00:58.694 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 7, negNoise = 6
17-03-18 06:00:58.694 -07 000000610 INF: Z Motor: After move to -0.169082, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:00:58.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:00:58.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:00:58.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:00:58.694 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:00:58.694 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:00:58.694 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:00:58.694 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:00:58.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:00:58.694 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:00:58.704 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:00:58.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:00:58.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:00:58.704 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:00:58.704 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:00:58.704 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:00:58.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:00:58.704 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:00:58.714 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:00:58.714 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:00:58.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:00:58.714 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:00:58.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37113 150\n [Camera]
17-03-18 06:00:58.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:00:59.364 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.996267,
17-03-18 06:00:59.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:00:59.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:00:59.364 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:59.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:00:59.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:00:59.364 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:59.374 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:59.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:00:59.374 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:59.374 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:00:59.554 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37113 835
17-03-18 06:00:59.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:00:59.764 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:00:59.764 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:00:59.764 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:59.764 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:00:59.764 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:00:59.764 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:00:59.764 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:59.764 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:00:59.764 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:00:59.774 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:00:59.924 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:00:59.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:00:59.924 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:00:59.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:00:59.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:00:59.924 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:00:59.934 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:00:59.934 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:00:59.934 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:00:59.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:01:00.114 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:00.114 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:00.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37113 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-18 06:01:00.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:00.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169089546379243. ------
17-03-18 06:01:00.114 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17551 mm
17-03-18 06:01:00.234 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:00.234 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:00.244 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:00.244 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 2 ms to get response, and 122 ms overall
17-03-18 06:01:00.244 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:00.244 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:01:00.244 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:01:00.244 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38340, sync = True, waitForSettling = False)
17-03-18 06:01:00.244 -07 000000512 INF: Z Motor: Moving to -0.175509 mm, started at -0.169090 mm, distance = -6.42 um
17-03-18 06:01:00.254 -07 000000512 INF: FPGA: Xmit ZDACW 38340\n [Z Motor]
17-03-18 06:01:00.254 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:01:00.264 -07 000000512 INF: FPGA: 'ZDACW 38340' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:01:00.264 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:00.264 -07 000000012 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:01:00.274 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:01:00.274 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:00.274 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:00.274 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:00.274 -07 000000618 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:01:00.274 -07 000000012 INF: FPGA: Recv ZDACR 38340
17-03-18 06:01:00.284 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:01:00.284 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:01:00.284 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:00.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:01:00.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:01:00.324 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:00.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:01:00.324 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:01:00.324 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:00.334 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:00.334 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:01:00.334 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:00.334 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:01:00.444 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:00.444 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:01:00.654 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:01:00.654 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 06:01:00.704 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:00.714 -07 000000591 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:01:00.724 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:00.724 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:00.724 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:01:00.724 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 06:01:01.674 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:01.674 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:01:01.684 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:01.684 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:01.714 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:01.714 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:01.714 -07 000000618 INF: Y Motor: Moved to 66.5386 after 1471 ms (table move)
17-03-18 06:01:01.714 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175509 mm (DAC = 38340)
17-03-18 06:01:01.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.724 -07 000000561 INF: FPGA: Recv ZSGSRD 36610
17-03-18 06:01:01.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:01:01.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.724 -07 000000591 INF: FPGA: Recv ZSGSRD 36614
17-03-18 06:01:01.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:01.734 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.734 -07 000000618 INF: FPGA: Recv ZSGSRD 36606
17-03-18 06:01:01.744 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.744 -07 000000591 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:01:01.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:01:01.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.764 -07 000000591 INF: FPGA: Recv ZSGSRD 36613
17-03-18 06:01:01.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36615
17-03-18 06:01:01.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.784 -07 000000590 INF: FPGA: Recv ZSGSRD 36613
17-03-18 06:01:01.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.794 -07 000000561 INF: FPGA: Recv ZSGSRD 36610
17-03-18 06:01:01.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:01.804 -07 000000591 INF: FPGA: Recv ZSGSRD 36611
17-03-18 06:01:01.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.814 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:01.814 -07 000000581 INF: FPGA: Recv ZPIEZORD 32774
17-03-18 06:01:01.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:01.824 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.5 V.
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36611 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36610 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36606 (-174.6 uncal um), Max = 36615 (-174.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36611, posNoise = 4, negNoise = 5
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: After move to -0.175509, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: Settle wait time = 1474 ms, measure time = 102 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:01:01.824 -07 000000579 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:01.874 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 06:01:01.874 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:01.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:01.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:01.874 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:01.874 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:01.874 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:01.874 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:01.884 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:01.884 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:01.884 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:01.884 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:01.894 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:01:01.894 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:01:01.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:01.944 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:02.244 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:02.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:02.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:02.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:02.284 -07 000000581 INF: FPGA: Recv @CAMSNAP 382
17-03-18 06:01:02.284 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:02.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 06:01:02.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:01:02.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:02.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:02.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:01:02.484 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:02.484 -07 000000561 INF: Autofocus start
17-03-18 06:01:02.484 -07 000000561 INF: MeasureProfile start
17-03-18 06:01:02.494 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:02.494 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:02.494 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:02.494 -07 000000561 INF: MeasureProfile done
17-03-18 06:01:02.494 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:01:02.494 -07 000000561 INF: Autofocus finished
17-03-18 06:01:02.694 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:02.694 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:02.694 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175520182733145. ----------
17-03-18 06:01:02.694 -07 000000610 INF: Cycle	144	Tile	9	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:02.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36855, sync = True, waitForSettling = True)
17-03-18 06:01:02.704 -07 000000610 INF: Z Motor: Moving to -0.168711 mm, started at -0.175520 mm, distance = 6.81 um
17-03-18 06:01:02.704 -07 000000610 INF: FPGA: Xmit ZDACW 36855\n [Z Motor]
17-03-18 06:01:02.704 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:01:02.714 -07 000000610 INF: FPGA: 'ZDACW 36855' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:02.714 -07 000000512 INF: FPGA: Recv ZDACR 36855
17-03-18 06:01:02.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.874 -07 000000590 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:01:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.884 -07 000000012 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:01:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.894 -07 000000480 INF: FPGA: Recv ZSGSRD 35557
17-03-18 06:01:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.904 -07 000000512 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:01:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.914 -07 000000579 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:01:02.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.924 -07 000000512 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:01:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.934 -07 000000012 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:01:02.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.944 -07 000000618 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:01:02.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.954 -07 000000590 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:01:02.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:02.964 -07 000000480 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:01:02.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:02.974 -07 000000012 INF: FPGA: Recv ZPIEZORD 31343
17-03-18 06:01:02.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:02.984 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.3 V.
17-03-18 06:01:02.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35553 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35552 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35549 (-167.8 uncal um), Max = 35557 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:01:02.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35553, posNoise = 4, negNoise = 4
17-03-18 06:01:02.984 -07 000000610 INF: Z Motor: After move to -0.168711, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:02.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:01:02.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:02.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:02.984 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:02.984 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:02.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:02.984 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:02.984 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:02.984 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:02.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:01:02.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:02.984 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:01:02.984 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:02.994 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:02.994 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:02.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:02.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:03.014 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms.
17-03-18 06:01:03.104 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-18 06:01:03.114 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 126 ms.
17-03-18 06:01:03.114 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 121 ms.
17-03-18 06:01:03.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37032 150\n [Camera]
17-03-18 06:01:03.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:03.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:03.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:03.764 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:03.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:03.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:03.764 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:03.774 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:03.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:03.774 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:03.774 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:03.954 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37032 835
17-03-18 06:01:04.104 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:04.144 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:01:04.144 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:01:04.144 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:04.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:01:04.144 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:01:04.144 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:04.154 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:04.154 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:04.154 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:01:04.154 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:01:04.324 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:04.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:04.324 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:04.324 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:04.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 06:01:04.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:04.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:04.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:04.324 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:04.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:01:04.514 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:01:04.514 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:04.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37032 150' command took 2 ms to send, 1394 ms to get response, and 1400 ms overall
17-03-18 06:01:04.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:04.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168723366287162. ------
17-03-18 06:01:04.514 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17550 mm
17-03-18 06:01:04.514 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:04.514 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:04.524 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:01:04.524 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:01:04.524 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:04.524 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38337, sync = True, waitForSettling = False)
17-03-18 06:01:04.524 -07 000000512 INF: Z Motor: Moving to -0.175496 mm, started at -0.168723 mm, distance = -6.77 um
17-03-18 06:01:04.524 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:04.524 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:01:04.524 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:01:04.534 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:04.534 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:04.534 -07 000000012 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:04.534 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:04.534 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:01:04.544 -07 000000512 INF: FPGA: Xmit ZDACW 38337\n [Z Motor]
17-03-18 06:01:04.544 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:01:04.554 -07 000000512 INF: FPGA: 'ZDACW 38337' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:01:04.554 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:04.564 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:04.564 -07 000000581 INF: FPGA: Recv ZDACR 38337
17-03-18 06:01:04.574 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:01:04.574 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:01:04.724 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.007176,
17-03-18 06:01:04.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:01:04.734 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:01:04.734 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:04.734 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:01:04.734 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:01:04.734 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:04.734 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:04.734 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-18 06:01:04.734 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:04.734 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:01:04.734 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:01:04.744 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:01:04.924 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:01:04.924 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:01:04.974 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:04.984 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:01:04.994 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:04.994 -07 000000012 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:04.994 -07 000000012 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:01:04.994 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 06:01:05.944 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:05.944 -07 000000591 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:01:05.954 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:05.954 -07 000000012 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:05.984 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:05.984 -07 000000012 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:01:05.984 -07 000000012 INF: Y Motor: Moved to 67.3716 after 1460 ms (table move)
17-03-18 06:01:05.984 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175496 mm (DAC = 38337)
17-03-18 06:01:05.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:05.994 -07 000000579 INF: FPGA: Recv ZSGSRD 36609
17-03-18 06:01:05.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:01:05.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:05.994 -07 000000012 INF: FPGA: Recv ZSGSRD 36614
17-03-18 06:01:06.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:06.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.004 -07 000000625 INF: FPGA: Recv ZSGSRD 36597
17-03-18 06:01:06.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.014 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.014 -07 000000581 INF: FPGA: Recv ZSGSRD 36605
17-03-18 06:01:06.024 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.024 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.024 -07 000000591 INF: FPGA: Recv ZSGSRD 36603
17-03-18 06:01:06.034 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.034 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.034 -07 000000012 INF: FPGA: Recv ZSGSRD 36605
17-03-18 06:01:06.044 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.044 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.044 -07 000000579 INF: FPGA: Recv ZSGSRD 36611
17-03-18 06:01:06.054 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.054 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.054 -07 000000581 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:01:06.064 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36613
17-03-18 06:01:06.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.074 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:06.074 -07 000000618 INF: FPGA: Recv ZSGSRD 36606
17-03-18 06:01:06.084 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.084 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:06.084 -07 000000579 INF: FPGA: Recv ZPIEZORD 32749
17-03-18 06:01:06.094 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.5 V.
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36607 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36607 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36597 (-174.5 uncal um), Max = 36614 (-174.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36607, posNoise = 7, negNoise = 10
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: After move to -0.175496, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: Settle wait time = 1465 ms, measure time = 103 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:01:06.094 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:06.144 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:01:06.144 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:06.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:06.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:06.154 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:06.154 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:06.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:06.154 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:06.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:06.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:06.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:06.154 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:06.164 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:01:06.164 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:01:06.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:06.214 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:06.514 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:06.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:06.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:06.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:01:06.554 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:06.554 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:06.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:01:06.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:01:06.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:06.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:01:06.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 06:01:06.654 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:06.654 -07 000000608 INF: Autofocus start
17-03-18 06:01:06.654 -07 000000608 INF: MeasureProfile start
17-03-18 06:01:06.654 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:06.664 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:06.664 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:06.664 -07 000000608 INF: MeasureProfile done
17-03-18 06:01:06.664 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:01:06.664 -07 000000608 INF: Autofocus finished
17-03-18 06:01:06.814 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:06.864 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:06.864 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:01:06.874 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175494485884578. ----------
17-03-18 06:01:06.874 -07 000000610 INF: Cycle	144	Tile	10	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:06.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36852, sync = True, waitForSettling = True)
17-03-18 06:01:06.874 -07 000000610 INF: Z Motor: Moving to -0.168698 mm, started at -0.175494 mm, distance = 6.80 um
17-03-18 06:01:06.874 -07 000000610 INF: FPGA: Xmit ZDACW 36852\n [Z Motor]
17-03-18 06:01:06.884 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:01:06.884 -07 000000610 INF: FPGA: 'ZDACW 36852' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:01:06.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:06.884 -07 000000590 INF: FPGA: Recv ZDACR 36852
17-03-18 06:01:06.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:06.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:07.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.044 -07 000000625 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:01:07.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:07.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.054 -07 000000480 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:01:07.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.064 -07 000000579 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:01:07.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:01:07.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.084 -07 000000012 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:01:07.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.094 -07 000000608 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:01:07.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.104 -07 000000012 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:01:07.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:01:07.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.124 -07 000000012 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:01:07.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:07.134 -07 000000579 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:01:07.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:07.144 -07 000000590 INF: FPGA: Recv ZPIEZORD 31340
17-03-18 06:01:07.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:07.154 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.3 V.
17-03-18 06:01:07.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35551 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35550 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35548 (-167.8 uncal um), Max = 35555 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:01:07.154 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35551, posNoise = 4, negNoise = 3
17-03-18 06:01:07.154 -07 000000610 INF: Z Motor: After move to -0.168698, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:07.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 06:01:07.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:07.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:07.154 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:07.154 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:07.154 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:07.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:07.154 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:07.154 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:07.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:07.154 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:07.154 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:07.154 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:07.164 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:07.164 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:07.164 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:01:07.164 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:07.164 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:01:07.174 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:01:07.174 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:07.174 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:01:07.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37029 150\n [Camera]
17-03-18 06:01:07.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:07.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:07.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:07.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:07.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:07.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:07.824 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:07.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:01:07.824 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:07.824 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:07.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:01:08.014 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37029 835
17-03-18 06:01:08.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:08.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:01:08.224 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:01:08.224 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:08.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:01:08.224 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:01:08.224 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:08.224 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:08.224 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:01:08.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:08.234 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:01:08.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:08.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:08.384 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:08.384 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:08.384 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:01:08.394 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:08.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:08.394 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:08.394 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:08.394 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:01:08.574 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:08.574 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:08.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37029 150' command took 2 ms to send, 1395 ms to get response, and 1401 ms overall
17-03-18 06:01:08.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:08.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168710517862879. ------
17-03-18 06:01:08.584 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:08.704 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17502 mm
17-03-18 06:01:08.704 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:08.704 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:08.704 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:01:08.704 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38234, sync = True, waitForSettling = False)
17-03-18 06:01:08.704 -07 000000462 INF: Z Motor: Moving to -0.175024 mm, started at -0.168711 mm, distance = -6.31 um
17-03-18 06:01:08.704 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:01:08.714 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 122 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 06:01:08.714 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:08.714 -07 000000590 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:01:08.724 -07 000000462 INF: FPGA: Xmit ZDACW 38234\n [Z Motor]
17-03-18 06:01:08.724 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:01:08.724 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:08.724 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:08.724 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:01:08.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:01:08.734 -07 000000462 INF: FPGA: 'ZDACW 38234' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:01:08.734 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:08.744 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:08.754 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:08.754 -07 000000579 INF: FPGA: Recv ZDACR 38234
17-03-18 06:01:08.764 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:08.764 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:01:08.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:01:08.784 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:01:08.784 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:08.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:01:08.794 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:01:08.794 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:08.794 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:08.794 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:01:08.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:01:08.804 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:01:08.934 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:08.934 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:01:09.114 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:01:09.114 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:01:09.164 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:09.174 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:01:09.174 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:01:09.174 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:09.174 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:01:09.174 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:01:10.084 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.028963,
17-03-18 06:01:10.124 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:10.124 -07 000000590 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:01:10.134 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:10.134 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:10.164 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:10.164 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:10.164 -07 000000625 INF: Y Motor: Moved to 68.2041 after 1455 ms (table move)
17-03-18 06:01:10.164 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175024 mm (DAC = 38234)
17-03-18 06:01:10.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.164 -07 000000579 INF: FPGA: Recv ZSGSRD 36540
17-03-18 06:01:10.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:10.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.174 -07 000000480 INF: FPGA: Recv ZSGSRD 36536
17-03-18 06:01:10.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.184 -07 000000579 INF: FPGA: Recv ZSGSRD 36531
17-03-18 06:01:10.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.194 -07 000000625 INF: FPGA: Recv ZSGSRD 36533
17-03-18 06:01:10.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.204 -07 000000480 INF: FPGA: Recv ZSGSRD 36538
17-03-18 06:01:10.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.214 -07 000000579 INF: FPGA: Recv ZSGSRD 36534
17-03-18 06:01:10.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.224 -07 000000561 INF: FPGA: Recv ZSGSRD 36532
17-03-18 06:01:10.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.234 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.234 -07 000000579 INF: FPGA: Recv ZSGSRD 36537
17-03-18 06:01:10.244 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.244 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.244 -07 000000608 INF: FPGA: Recv ZSGSRD 36541
17-03-18 06:01:10.254 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.254 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:10.254 -07 000000579 INF: FPGA: Recv ZSGSRD 36539
17-03-18 06:01:10.264 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.264 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:10.264 -07 000000608 INF: FPGA: Recv ZPIEZORD 32638
17-03-18 06:01:10.274 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.6 V.
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36536 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36536 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36531 (-174.1 uncal um), Max = 36541 (-174.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36536, posNoise = 5, negNoise = 5
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: After move to -0.175024, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:01:10.274 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:10.324 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:01:10.324 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:10.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:10.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:10.334 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:10.334 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:10.334 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:10.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:10.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:10.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:10.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:10.334 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:10.344 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:01:10.344 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:01:10.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:10.394 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:10.694 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:10.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:10.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:10.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:10.734 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:10.734 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:10.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:01:10.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:01:10.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:10.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:10.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:01:10.834 -07 000000590 INF: Autofocus start
17-03-18 06:01:10.834 -07 000000590 INF: MeasureProfile start
17-03-18 06:01:10.834 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:10.834 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:10.844 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:10.844 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:10.844 -07 000000590 INF: MeasureProfile done
17-03-18 06:01:10.844 -07 000000590 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:01:10.844 -07 000000590 INF: Autofocus finished
17-03-18 06:01:11.044 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:11.044 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:11.044 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.175038366822513. ----------
17-03-18 06:01:11.044 -07 000000610 INF: Cycle	144	Tile	11	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:11.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36731, sync = True, waitForSettling = True)
17-03-18 06:01:11.054 -07 000000610 INF: Z Motor: Moving to -0.168144 mm, started at -0.175038 mm, distance = 6.89 um
17-03-18 06:01:11.054 -07 000000610 INF: FPGA: Xmit ZDACW 36731\n [Z Motor]
17-03-18 06:01:11.054 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:01:11.064 -07 000000610 INF: FPGA: 'ZDACW 36731' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:11.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:11.064 -07 000000501 INF: FPGA: Recv ZDACR 36731
17-03-18 06:01:11.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:11.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.224 -07 000000608 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:01:11.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35470
17-03-18 06:01:11.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.244 -07 000000561 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:01:11.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:01:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.264 -07 000000561 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:01:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.274 -07 000000618 INF: FPGA: Recv ZSGSRD 35469
17-03-18 06:01:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.284 -07 000000579 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:01:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.294 -07 000000462 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:01:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.304 -07 000000501 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:01:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:11.314 -07 000000618 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:01:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:11.324 -07 000000501 INF: FPGA: Recv ZPIEZORD 31216
17-03-18 06:01:11.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:11.334 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -9.4 V.
17-03-18 06:01:11.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35463 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35462 (-167.3 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:01:11.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 6, negNoise = 2
17-03-18 06:01:11.334 -07 000000610 INF: Z Motor: After move to -0.168144, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:11.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:01:11.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:11.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:11.334 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:11.334 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:11.334 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:11.334 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:11.334 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:11.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:11.334 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:11.334 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:11.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:01:11.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:11.344 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:11.344 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:11.344 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:11.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:11.354 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:01:11.354 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:01:11.354 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:11.354 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:01:11.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36908 150\n [Camera]
17-03-18 06:01:11.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:11.814 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:12.004 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:12.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:12.004 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:12.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:12.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:12.004 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:12.004 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:12.004 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:12.014 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:12.014 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:12.194 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36908 835
17-03-18 06:01:12.344 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:12.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:01:12.394 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:01:12.394 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:12.394 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:01:12.394 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:01:12.394 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:12.404 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:12.404 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:01:12.404 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:12.404 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:01:12.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:12.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:12.564 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:12.564 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:12.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:12.564 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:12.574 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:12.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:01:12.574 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:12.574 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:01:12.754 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:12.754 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:12.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36908 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:01:12.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:12.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168151611406546. ------
17-03-18 06:01:12.754 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:12.754 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17483 mm
17-03-18 06:01:12.754 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:12.764 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:12.764 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:01:12.764 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:01:12.764 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:01:12.764 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:12.764 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38193, sync = True, waitForSettling = False)
17-03-18 06:01:12.764 -07 000000501 INF: Z Motor: Moving to -0.174836 mm, started at -0.168152 mm, distance = -6.68 um
17-03-18 06:01:12.884 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:12.884 -07 000000512 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:01:12.894 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 06:01:12.894 -07 000000590 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:12.894 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:12.894 -07 000000590 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:01:12.904 -07 000000501 INF: FPGA: Xmit ZDACW 38193\n [Z Motor]
17-03-18 06:01:12.904 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:01:12.914 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:12.914 -07 000000501 INF: FPGA: 'ZDACW 38193' command took 0 ms to send, 0 ms to get response, and 146 ms overall
17-03-18 06:01:12.934 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:12.934 -07 000000012 INF: FPGA: Recv ZDACR 38193
17-03-18 06:01:12.944 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:12.944 -07 000000501 INF: Z Motor: MoveAbsStepped took 176 ms (did NOT wait for settling yet))
17-03-18 06:01:12.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:01:12.964 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:01:12.964 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:12.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:01:12.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:01:12.964 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:12.964 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:12.964 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:01:12.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:01:12.964 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:12.964 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 84 ms to get response, and 203 ms overall
17-03-18 06:01:12.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:01:13.284 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 06:01:13.284 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:01:13.334 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:13.344 -07 000000625 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:01:13.344 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:01:13.344 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:13.344 -07 000000590 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:01:13.344 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.139 mm/sec
17-03-18 06:01:14.294 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:14.294 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:01:14.304 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.304 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:14.334 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:14.334 -07 000000590 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:14.334 -07 000000590 INF: Y Motor: Moved to 69.0264 after 1569 ms (table move)
17-03-18 06:01:14.334 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174836 mm (DAC = 38193)
17-03-18 06:01:14.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.334 -07 000000501 INF: FPGA: Recv ZSGSRD 36513
17-03-18 06:01:14.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:14.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.344 -07 000000579 INF: FPGA: Recv ZSGSRD 36512
17-03-18 06:01:14.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.354 -07 000000581 INF: FPGA: Recv ZSGSRD 36504
17-03-18 06:01:14.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.364 -07 000000618 INF: FPGA: Recv ZSGSRD 36497
17-03-18 06:01:14.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36504
17-03-18 06:01:14.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.384 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.384 -07 000000606 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:01:14.394 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.394 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.394 -07 000000581 INF: FPGA: Recv ZSGSRD 36506
17-03-18 06:01:14.404 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.404 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.404 -07 000000618 INF: FPGA: Recv ZSGSRD 36505
17-03-18 06:01:14.414 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.414 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.414 -07 000000480 INF: FPGA: Recv ZSGSRD 36515
17-03-18 06:01:14.424 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.424 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:14.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36513
17-03-18 06:01:14.434 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.434 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:14.434 -07 000000579 INF: FPGA: Recv ZPIEZORD 32655
17-03-18 06:01:14.444 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.5 V.
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36508 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36508 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36515 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36508, posNoise = 7, negNoise = 11
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: After move to -0.174836, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: Settle wait time = 1572 ms, measure time = 105 ms (allowed 150 ms), total time = 1677 ms
17-03-18 06:01:14.444 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:14.494 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms
17-03-18 06:01:14.494 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:14.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:14.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:14.494 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:14.494 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:14.494 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:14.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:14.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:14.494 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:14.504 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:14.504 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:14.504 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:01:14.504 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:01:14.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:14.554 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:14.854 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:14.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:14.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:14.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:14.894 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:14.894 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:14.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:01:14.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:01:14.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:14.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:14.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:01:15.094 -07 000000618 INF: Autofocus start
17-03-18 06:01:15.094 -07 000000618 INF: MeasureProfile start
17-03-18 06:01:15.094 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:15.104 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:15.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:15.114 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:15.114 -07 000000618 INF: MeasureProfile done
17-03-18 06:01:15.114 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:01:15.114 -07 000000618 INF: Autofocus finished
17-03-18 06:01:15.314 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:15.314 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:15.314 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174858488882544. ----------
17-03-18 06:01:15.314 -07 000000610 INF: Cycle	144	Tile	12	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:15.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36707, sync = True, waitForSettling = True)
17-03-18 06:01:15.324 -07 000000610 INF: Z Motor: Moving to -0.168034 mm, started at -0.174858 mm, distance = 6.82 um
17-03-18 06:01:15.324 -07 000000610 INF: FPGA: Xmit ZDACW 36707\n [Z Motor]
17-03-18 06:01:15.324 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:01:15.334 -07 000000610 INF: FPGA: 'ZDACW 36707' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:15.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:15.334 -07 000000606 INF: FPGA: Recv ZDACR 36707
17-03-18 06:01:15.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:15.444 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.03576,
17-03-18 06:01:15.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.494 -07 000000444 INF: FPGA: Recv ZSGSRD 35443
17-03-18 06:01:15.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:15.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.504 -07 000000618 INF: FPGA: Recv ZSGSRD 35453
17-03-18 06:01:15.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.514 -07 000000012 INF: FPGA: Recv ZSGSRD 35445
17-03-18 06:01:15.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.524 -07 000000581 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:01:15.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.534 -07 000000581 INF: FPGA: Recv ZSGSRD 35453
17-03-18 06:01:15.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35454
17-03-18 06:01:15.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.554 -07 000000581 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:01:15.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35444
17-03-18 06:01:15.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.574 -07 000000480 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:01:15.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:15.584 -07 000000606 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:01:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:15.594 -07 000000579 INF: FPGA: Recv ZPIEZORD 31217
17-03-18 06:01:15.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:15.604 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.3 V.
17-03-18 06:01:15.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35447 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35443 (-167.1 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:01:15.604 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 6, negNoise = 5
17-03-18 06:01:15.604 -07 000000610 INF: Z Motor: After move to -0.168034, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:15.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:01:15.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:15.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:15.604 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:15.604 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:15.604 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:15.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:15.604 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:15.604 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:15.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:15.604 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:15.604 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:15.604 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:15.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:15.614 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:15.614 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:15.614 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:15.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:01:15.624 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:01:15.624 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:15.624 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:01:15.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36884 150\n [Camera]
17-03-18 06:01:15.824 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:16.274 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:16.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:16.274 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:16.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:16.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:16.274 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:16.274 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:16.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:16.284 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:16.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:16.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36884 835
17-03-18 06:01:16.614 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:16.674 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:01:16.674 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:01:16.674 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:16.674 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:01:16.674 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:01:16.674 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:16.674 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:16.674 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:01:16.684 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:16.684 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:01:16.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:16.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:16.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:16.834 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:16.834 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:16.834 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 06:01:16.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:16.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:16.834 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:16.834 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:16.834 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 06:01:17.024 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:01:17.024 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:17.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36884 150' command took 2 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-18 06:01:17.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:17.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168048824012277. ------
17-03-18 06:01:17.024 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17390 mm
17-03-18 06:01:17.024 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:17.024 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:17.034 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:01:17.034 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:01:17.034 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:17.034 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37989, sync = True, waitForSettling = False)
17-03-18 06:01:17.034 -07 000000606 INF: Z Motor: Moving to -0.173902 mm, started at -0.168049 mm, distance = -5.85 um
17-03-18 06:01:17.034 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:17.034 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:01:17.034 -07 000000444 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:01:17.044 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:17.044 -07 000000606 INF: FPGA: Xmit ZDACW 37989\n [Z Motor]
17-03-18 06:01:17.044 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:17.044 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:01:17.044 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:17.044 -07 000000561 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:01:17.054 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:17.054 -07 000000606 INF: FPGA: 'ZDACW 37989' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:01:17.064 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:17.074 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:17.074 -07 000000512 INF: FPGA: Recv ZDACR 37989
17-03-18 06:01:17.084 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:17.084 -07 000000606 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:01:17.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:01:17.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:01:17.234 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:17.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:01:17.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:01:17.234 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:17.244 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:01:17.244 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:01:17.244 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:17.254 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:01:17.254 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:17.254 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 06:01:17.434 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:01:17.434 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:01:17.484 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:17.494 -07 000000512 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:01:17.504 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:17.504 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:17.504 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:01:17.504 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 06:01:18.454 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:18.454 -07 000000625 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:01:18.464 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:18.464 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:18.494 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:18.494 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:01:18.494 -07 000000561 INF: Y Motor: Moved to 69.8628 after 1461 ms (table move)
17-03-18 06:01:18.494 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173902 mm (DAC = 37989)
17-03-18 06:01:18.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.504 -07 000000618 INF: FPGA: Recv ZSGSRD 36363
17-03-18 06:01:18.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:01:18.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.504 -07 000000625 INF: FPGA: Recv ZSGSRD 36369
17-03-18 06:01:18.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.514 -07 000000581 INF: FPGA: Recv ZSGSRD 36356
17-03-18 06:01:18.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.524 -07 000000512 INF: FPGA: Recv ZSGSRD 36354
17-03-18 06:01:18.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.534 -07 000000561 INF: FPGA: Recv ZSGSRD 36358
17-03-18 06:01:18.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.544 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.544 -07 000000606 INF: FPGA: Recv ZSGSRD 36363
17-03-18 06:01:18.554 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.554 -07 000000581 INF: FPGA: Recv ZSGSRD 36359
17-03-18 06:01:18.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.564 -07 000000606 INF: FPGA: Recv ZSGSRD 36365
17-03-18 06:01:18.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.574 -07 000000561 INF: FPGA: Recv ZSGSRD 36359
17-03-18 06:01:18.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:18.584 -07 000000625 INF: FPGA: Recv ZSGSRD 36364
17-03-18 06:01:18.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.594 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:18.594 -07 000000480 INF: FPGA: Recv ZPIEZORD 32444
17-03-18 06:01:18.604 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -8.7 V.
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36361 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36361 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36354 (-173.0 uncal um), Max = 36369 (-173.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36361, posNoise = 8, negNoise = 7
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: After move to -0.173902, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: Settle wait time = 1466 ms, measure time = 102 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:01:18.604 -07 000000579 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:18.654 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:01:18.654 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:18.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:18.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:18.664 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:18.664 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:18.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:18.664 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:18.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:18.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:18.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:18.664 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:18.674 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:01:18.674 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:01:18.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:18.724 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:19.014 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:19.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:19.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:19.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:01:19.054 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:19.054 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:19.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:01:19.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:01:19.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:19.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:19.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:01:19.154 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:19.154 -07 000000606 INF: Autofocus start
17-03-18 06:01:19.154 -07 000000606 INF: MeasureProfile start
17-03-18 06:01:19.154 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:19.164 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:19.164 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:19.164 -07 000000606 INF: MeasureProfile done
17-03-18 06:01:19.164 -07 000000606 INF: X=112  Z correction [um]=0.5011052
17-03-18 06:01:19.164 -07 000000606 INF: Autofocus finished
17-03-18 06:01:19.364 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:19.364 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:19.364 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.173914129697705. ----------
17-03-18 06:01:19.374 -07 000000610 INF: Cycle	144	Tile	13	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:19.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36611, sync = True, waitForSettling = True)
17-03-18 06:01:19.374 -07 000000610 INF: Z Motor: Moving to -0.167594 mm, started at -0.173914 mm, distance = 6.32 um
17-03-18 06:01:19.374 -07 000000610 INF: FPGA: Xmit ZDACW 36611\n [Z Motor]
17-03-18 06:01:19.374 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:01:19.384 -07 000000610 INF: FPGA: 'ZDACW 36611' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:19.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:19.384 -07 000000512 INF: FPGA: Recv ZDACR 36611
17-03-18 06:01:19.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.544 -07 000000581 INF: FPGA: Recv ZSGSRD 35380
17-03-18 06:01:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.554 -07 000000581 INF: FPGA: Recv ZSGSRD 35377
17-03-18 06:01:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35374
17-03-18 06:01:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.574 -07 000000618 INF: FPGA: Recv ZSGSRD 35371
17-03-18 06:01:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.584 -07 000000625 INF: FPGA: Recv ZSGSRD 35380
17-03-18 06:01:19.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.594 -07 000000561 INF: FPGA: Recv ZSGSRD 35377
17-03-18 06:01:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.604 -07 000000618 INF: FPGA: Recv ZSGSRD 35379
17-03-18 06:01:19.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35378
17-03-18 06:01:19.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35375
17-03-18 06:01:19.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:19.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35380
17-03-18 06:01:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:19.644 -07 000000581 INF: FPGA: Recv ZPIEZORD 31133
17-03-18 06:01:19.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:19.654 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.4 V.
17-03-18 06:01:19.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35377 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35378 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35371 (-166.7 uncal um), Max = 35380 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:01:19.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35377, posNoise = 3, negNoise = 6
17-03-18 06:01:19.654 -07 000000610 INF: Z Motor: After move to -0.167594, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:19.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:01:19.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:19.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:19.654 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:19.654 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:19.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:19.654 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:19.654 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:19.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:19.654 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:19.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:19.654 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:01:19.654 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:19.664 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:01:19.664 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:19.664 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:19.664 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:19.674 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:01:19.674 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:01:19.674 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:19.674 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:01:19.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36787 150\n [Camera]
17-03-18 06:01:19.874 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:20.324 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:20.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:20.324 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:20.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:20.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:01:20.324 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:20.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:20.324 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:20.324 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:20.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:01:20.514 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36787 835
17-03-18 06:01:20.664 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:20.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:01:20.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:01:20.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:20.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:01:20.714 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:01:20.714 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:20.724 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:20.724 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:01:20.724 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:20.724 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:01:20.804 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.015368,
17-03-18 06:01:20.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:20.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:20.884 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:20.884 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:20.884 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:01:20.884 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:20.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:20.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:20.884 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:20.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:01:21.074 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:01:21.074 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:21.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36787 150' command took 2 ms to send, 1394 ms to get response, and 1400 ms overall
17-03-18 06:01:21.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:21.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167592704950212. ------
17-03-18 06:01:21.074 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:21.074 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17398 mm
17-03-18 06:01:21.074 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:21.214 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:21.214 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 06:01:21.214 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:21.214 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:01:21.214 -07 000000581 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:01:21.214 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38007, sync = True, waitForSettling = False)
17-03-18 06:01:21.214 -07 000000012 INF: Z Motor: Moving to -0.173985 mm, started at -0.167593 mm, distance = -6.39 um
17-03-18 06:01:21.224 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:21.224 -07 000000444 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:01:21.234 -07 000000012 INF: FPGA: Xmit ZDACW 38007\n [Z Motor]
17-03-18 06:01:21.234 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:01:21.234 -07 000000581 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:21.234 -07 000000581 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:21.234 -07 000000581 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:01:21.234 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:01:21.244 -07 000000012 INF: FPGA: 'ZDACW 38007' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:01:21.244 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:21.244 -07 000000579 INF: FPGA: Recv ZDACR 38007
17-03-18 06:01:21.254 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:21.254 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:21.254 -07 000000012 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:01:21.284 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:01:21.284 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:01:21.284 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:21.284 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:01:21.284 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:01:21.284 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:21.294 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:21.294 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:01:21.294 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:01:21.294 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:01:21.414 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:21.414 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:21.624 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:01:21.624 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:01:21.674 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:21.684 -07 000000012 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:01:21.684 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:01:21.684 -07 000000581 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:21.684 -07 000000581 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:01:21.684 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:01:21.824 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:22.634 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:22.634 -07 000000561 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:01:22.644 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.644 -07 000000581 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:22.674 -07 000000581 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:22.674 -07 000000581 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:22.674 -07 000000581 INF: Y Motor: Moved to 70.6875 after 1459 ms (table move)
17-03-18 06:01:22.674 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173985 mm (DAC = 38007)
17-03-18 06:01:22.674 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.674 -07 000000444 INF: FPGA: Recv ZSGSRD 36375
17-03-18 06:01:22.684 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:22.684 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.684 -07 000000012 INF: FPGA: Recv ZSGSRD 36377
17-03-18 06:01:22.694 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.694 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.694 -07 000000561 INF: FPGA: Recv ZSGSRD 36370
17-03-18 06:01:22.704 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.704 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.704 -07 000000579 INF: FPGA: Recv ZSGSRD 36371
17-03-18 06:01:22.714 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.714 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.714 -07 000000444 INF: FPGA: Recv ZSGSRD 36366
17-03-18 06:01:22.724 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.724 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.724 -07 000000625 INF: FPGA: Recv ZSGSRD 36372
17-03-18 06:01:22.734 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.734 -07 000000561 INF: FPGA: Recv ZSGSRD 36374
17-03-18 06:01:22.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.744 -07 000000579 INF: FPGA: Recv ZSGSRD 36375
17-03-18 06:01:22.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.754 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36378
17-03-18 06:01:22.764 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:22.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36374
17-03-18 06:01:22.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.774 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:22.774 -07 000000618 INF: FPGA: Recv ZPIEZORD 32482
17-03-18 06:01:22.784 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.6 V.
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36373 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36374 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36366 (-173.1 uncal um), Max = 36378 (-173.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36373, posNoise = 5, negNoise = 7
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: After move to -0.173985, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:01:22.784 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:22.834 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 06:01:22.834 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:22.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:22.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:22.834 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:22.834 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:22.834 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:22.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:22.844 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:22.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:22.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:22.844 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:22.854 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:01:22.854 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:01:22.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:22.904 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:23.204 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:23.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:23.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:23.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:23.244 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:23.244 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:23.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:01:23.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:01:23.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:23.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:01:23.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:01:23.344 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:23.344 -07 000000444 INF: Autofocus start
17-03-18 06:01:23.344 -07 000000444 INF: MeasureProfile start
17-03-18 06:01:23.344 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:23.354 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:23.354 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:23.364 -07 000000444 INF: MeasureProfile done
17-03-18 06:01:23.364 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:01:23.364 -07 000000444 INF: Autofocus finished
17-03-18 06:01:23.554 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:23.554 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:23.554 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173991220243406. ----------
17-03-18 06:01:23.554 -07 000000610 INF: Cycle	144	Tile	14	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:23.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36522, sync = True, waitForSettling = True)
17-03-18 06:01:23.564 -07 000000610 INF: Z Motor: Moving to -0.167187 mm, started at -0.173991 mm, distance = 6.80 um
17-03-18 06:01:23.564 -07 000000610 INF: FPGA: Xmit ZDACW 36522\n [Z Motor]
17-03-18 06:01:23.564 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:01:23.574 -07 000000610 INF: FPGA: 'ZDACW 36522' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:23.574 -07 000000581 INF: FPGA: Recv ZDACR 36522
17-03-18 06:01:23.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.734 -07 000000012 INF: FPGA: Recv ZSGSRD 35312
17-03-18 06:01:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.744 -07 000000012 INF: FPGA: Recv ZSGSRD 35320
17-03-18 06:01:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.754 -07 000000581 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:01:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35316
17-03-18 06:01:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.774 -07 000000444 INF: FPGA: Recv ZSGSRD 35313
17-03-18 06:01:23.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.784 -07 000000561 INF: FPGA: Recv ZSGSRD 35318
17-03-18 06:01:23.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.794 -07 000000012 INF: FPGA: Recv ZSGSRD 35311
17-03-18 06:01:23.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.804 -07 000000561 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:01:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35318
17-03-18 06:01:23.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:23.824 -07 000000581 INF: FPGA: Recv ZSGSRD 35313
17-03-18 06:01:23.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:23.834 -07 000000618 INF: FPGA: Recv ZPIEZORD 31085
17-03-18 06:01:23.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:23.844 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.3 V.
17-03-18 06:01:23.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35315 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35315 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35311 (-166.3 uncal um), Max = 35320 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:01:23.844 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35315, posNoise = 5, negNoise = 4
17-03-18 06:01:23.844 -07 000000610 INF: Z Motor: After move to -0.167187, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:23.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:01:23.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:23.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:23.844 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:23.844 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:23.844 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:23.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:23.844 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:23.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:23.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:23.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:23.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:23.844 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:23.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:01:23.854 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:23.854 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:01:23.854 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:23.864 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:01:23.864 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:01:23.864 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:23.864 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:01:23.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36698 150\n [Camera]
17-03-18 06:01:24.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:24.514 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:24.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:24.514 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:24.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:24.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:24.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:24.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:24.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:24.524 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:24.524 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:24.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36698 835
17-03-18 06:01:24.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:24.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:01:24.894 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:01:24.894 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:24.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:01:24.894 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:01:24.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:24.904 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:24.904 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:01:24.904 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:24.914 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:01:25.074 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:25.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:25.074 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:25.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:25.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:25.074 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:25.084 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:25.084 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:01:25.084 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:25.084 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:01:25.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:25.264 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:25.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36698 150' command took 2 ms to send, 1395 ms to get response, and 1401 ms overall
17-03-18 06:01:25.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:25.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167194403797423. ------
17-03-18 06:01:25.274 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:25.274 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17386 mm
17-03-18 06:01:25.274 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:25.274 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:25.274 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:01:25.274 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:01:25.274 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37979, sync = True, waitForSettling = False)
17-03-18 06:01:25.274 -07 000000590 INF: Z Motor: Moving to -0.173857 mm, started at -0.167194 mm, distance = -6.66 um
17-03-18 06:01:25.284 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:25.284 -07 000000590 INF: FPGA: Xmit ZDACW 37979\n [Z Motor]
17-03-18 06:01:25.284 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:01:25.294 -07 000000590 INF: FPGA: 'ZDACW 37979' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:01:25.294 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:25.294 -07 000000618 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:01:25.304 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:01:25.304 -07 000000480 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:25.304 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:25.304 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:25.304 -07 000000480 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:01:25.314 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:25.314 -07 000000561 INF: FPGA: Recv ZDACR 37979
17-03-18 06:01:25.324 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:25.324 -07 000000590 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:01:25.324 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:25.474 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:01:25.474 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:01:25.474 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:25.474 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:25.474 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:01:25.504 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:25.504 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 06:01:25.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 508 ms.
17-03-18 06:01:25.594 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 06:01:25.594 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:25.594 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:01:25.604 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 06:01:25.694 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:01:25.694 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:01:25.754 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:25.754 -07 000000444 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:01:25.764 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:25.764 -07 000000480 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:25.764 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:01:25.764 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 06:01:26.164 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.008536,
17-03-18 06:01:26.714 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:26.714 -07 000000590 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:01:26.724 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:26.724 -07 000000480 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:26.754 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:26.754 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:26.754 -07 000000480 INF: Y Motor: Moved to 71.5181 after 1478 ms (table move)
17-03-18 06:01:26.754 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173857 mm (DAC = 37979)
17-03-18 06:01:26.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.764 -07 000000561 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:01:26.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:01:26.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.764 -07 000000012 INF: FPGA: Recv ZSGSRD 36358
17-03-18 06:01:26.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.774 -07 000000480 INF: FPGA: Recv ZSGSRD 36356
17-03-18 06:01:26.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.784 -07 000000625 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:01:26.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.794 -07 000000618 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:01:26.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.804 -07 000000625 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:01:26.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.814 -07 000000618 INF: FPGA: Recv ZSGSRD 36350
17-03-18 06:01:26.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.824 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:26.824 -07 000000591 INF: FPGA: Recv ZSGSRD 36359
17-03-18 06:01:26.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.834 -07 000000606 INF: FPGA: Recv ZSGSRD 36354
17-03-18 06:01:26.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:26.844 -07 000000012 INF: FPGA: Recv ZSGSRD 36354
17-03-18 06:01:26.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.854 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:26.854 -07 000000618 INF: FPGA: Recv ZPIEZORD 32470
17-03-18 06:01:26.864 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.6 V.
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36354 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36350 (-173.0 uncal um), Max = 36359 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36354, posNoise = 5, negNoise = 4
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: After move to -0.173857, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: Settle wait time = 1482 ms, measure time = 103 ms (allowed 150 ms), total time = 1585 ms
17-03-18 06:01:26.864 -07 000000579 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:26.914 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:01:26.914 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:26.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:26.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:26.914 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:26.914 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:26.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:26.914 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:26.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:26.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:26.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:26.924 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:26.924 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:01:26.924 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:01:26.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:26.974 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:27.274 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:27.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:27.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:27.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:27.314 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:27.314 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:27.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:01:27.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:01:27.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:27.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:27.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:01:27.414 -07 000000590 INF: Autofocus start
17-03-18 06:01:27.414 -07 000000590 INF: MeasureProfile start
17-03-18 06:01:27.414 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:27.414 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:27.424 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:27.424 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:27.424 -07 000000590 INF: MeasureProfile done
17-03-18 06:01:27.424 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:01:27.424 -07 000000590 INF: Autofocus finished
17-03-18 06:01:27.624 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:27.624 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:27.624 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173869160212713. ----------
17-03-18 06:01:27.634 -07 000000610 INF: Cycle	144	Tile	15	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:27.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36512, sync = True, waitForSettling = True)
17-03-18 06:01:27.634 -07 000000610 INF: Z Motor: Moving to -0.167141 mm, started at -0.173869 mm, distance = 6.73 um
17-03-18 06:01:27.634 -07 000000610 INF: FPGA: Xmit ZDACW 36512\n [Z Motor]
17-03-18 06:01:27.634 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:01:27.644 -07 000000610 INF: FPGA: 'ZDACW 36512' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:27.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:27.644 -07 000000561 INF: FPGA: Recv ZDACR 36512
17-03-18 06:01:27.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:27.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35313
17-03-18 06:01:27.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:27.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:01:27.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.824 -07 000000012 INF: FPGA: Recv ZSGSRD 35311
17-03-18 06:01:27.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.834 -07 000000591 INF: FPGA: Recv ZSGSRD 35306
17-03-18 06:01:27.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.844 -07 000000606 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:01:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.854 -07 000000561 INF: FPGA: Recv ZSGSRD 35307
17-03-18 06:01:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.864 -07 000000625 INF: FPGA: Recv ZSGSRD 35311
17-03-18 06:01:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35309
17-03-18 06:01:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.884 -07 000000579 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:01:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:27.894 -07 000000480 INF: FPGA: Recv ZSGSRD 35306
17-03-18 06:01:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:27.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 31061
17-03-18 06:01:27.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:27.914 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.4 V.
17-03-18 06:01:27.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35309 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35308 (-166.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35306 (-166.3 uncal um), Max = 35313 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:01:27.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35309, posNoise = 4, negNoise = 3
17-03-18 06:01:27.914 -07 000000610 INF: Z Motor: After move to -0.167141, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:27.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:01:27.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:27.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:27.914 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:27.914 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:27.914 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:27.914 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:27.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:27.914 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:27.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:27.914 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:27.914 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:27.914 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:27.924 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:27.924 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:27.924 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:01:27.924 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:27.924 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:01:27.924 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:01:27.934 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:01:27.934 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:01:27.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36688 150\n [Camera]
17-03-18 06:01:28.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:28.584 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:28.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:28.584 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:28.584 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:28.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:28.584 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:28.594 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:28.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:28.594 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:28.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:28.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36688 835
17-03-18 06:01:28.924 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:28.984 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:01:28.984 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:01:28.984 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:28.984 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:01:28.984 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:01:28.984 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:28.994 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:28.994 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:01:28.994 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:29.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:01:29.144 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:29.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:29.144 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:29.144 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:29.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 06:01:29.144 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:29.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:29.144 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:29.144 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:29.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:01:29.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:29.334 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:29.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36688 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:01:29.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:29.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167155858524573. ------
17-03-18 06:01:29.344 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:29.344 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17350 mm
17-03-18 06:01:29.344 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:29.344 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:29.344 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:01:29.344 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37902, sync = True, waitForSettling = False)
17-03-18 06:01:29.344 -07 000000590 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:01:29.344 -07 000000480 INF: Z Motor: Moving to -0.173504 mm, started at -0.167156 mm, distance = -6.35 um
17-03-18 06:01:29.354 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:29.354 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:29.354 -07 000000561 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:01:29.364 -07 000000480 INF: FPGA: Xmit ZDACW 37902\n [Z Motor]
17-03-18 06:01:29.364 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:01:29.364 -07 000000590 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:29.364 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:01:29.364 -07 000000590 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:29.364 -07 000000590 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:01:29.374 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:29.374 -07 000000480 INF: FPGA: 'ZDACW 37902' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:01:29.384 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:29.394 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:29.394 -07 000000625 INF: FPGA: Recv ZDACR 37902
17-03-18 06:01:29.404 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:29.404 -07 000000480 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:01:29.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:01:29.534 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:01:29.534 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:29.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:01:29.534 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:29.534 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:01:29.534 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:29.544 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:01:29.544 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:01:29.544 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:01:29.574 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:29.574 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:01:29.754 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:01:29.754 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:01:29.814 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:29.814 -07 000000606 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:01:29.824 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:29.824 -07 000000590 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:29.824 -07 000000590 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:01:29.824 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.154 mm/sec
17-03-18 06:01:30.774 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:30.774 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:01:30.784 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.784 -07 000000590 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:30.814 -07 000000590 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:30.814 -07 000000590 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:30.814 -07 000000590 INF: Y Motor: Moved to 72.3486 after 1468 ms (table move)
17-03-18 06:01:30.814 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173504 mm (DAC = 37902)
17-03-18 06:01:30.814 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.814 -07 000000501 INF: FPGA: Recv ZSGSRD 36302
17-03-18 06:01:30.824 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:30.824 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.824 -07 000000501 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:01:30.834 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.834 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36301
17-03-18 06:01:30.844 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.844 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.844 -07 000000501 INF: FPGA: Recv ZSGSRD 36294
17-03-18 06:01:30.854 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.854 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.854 -07 000000501 INF: FPGA: Recv ZSGSRD 36295
17-03-18 06:01:30.864 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.864 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.864 -07 000000606 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:01:30.874 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.874 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.874 -07 000000591 INF: FPGA: Recv ZSGSRD 36303
17-03-18 06:01:30.884 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.884 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.884 -07 000000591 INF: FPGA: Recv ZSGSRD 36298
17-03-18 06:01:30.894 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.894 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.894 -07 000000561 INF: FPGA: Recv ZSGSRD 36295
17-03-18 06:01:30.904 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.904 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:30.904 -07 000000561 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:01:30.914 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.914 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:30.914 -07 000000561 INF: FPGA: Recv ZPIEZORD 32363
17-03-18 06:01:30.924 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.7 V.
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36300 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36300 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36294 (-172.6 uncal um), Max = 36304 (-172.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36300, posNoise = 4, negNoise = 6
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: After move to -0.173504, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:01:30.924 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:30.974 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:01:30.974 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:30.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:30.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:30.974 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:30.974 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:30.974 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:30.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:30.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:30.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:30.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:30.984 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:30.994 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:01:30.994 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:01:30.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:31.034 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:31.334 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:31.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:31.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:31.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:01:31.374 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:31.374 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:31.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:01:31.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:01:31.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:31.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:31.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:01:31.474 -07 000000606 INF: Autofocus start
17-03-18 06:01:31.474 -07 000000606 INF: MeasureProfile start
17-03-18 06:01:31.474 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:31.474 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:31.484 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:31.484 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:31.484 -07 000000606 INF: MeasureProfile done
17-03-18 06:01:31.484 -07 000000606 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:01:31.484 -07 000000606 INF: Autofocus finished
17-03-18 06:01:31.524 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.026244,
17-03-18 06:01:31.684 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:31.684 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:31.684 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173522252757058. ----------
17-03-18 06:01:31.684 -07 000000610 INF: Cycle	144	Tile	16	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:31.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36452, sync = True, waitForSettling = True)
17-03-18 06:01:31.694 -07 000000610 INF: Z Motor: Moving to -0.166867 mm, started at -0.173522 mm, distance = 6.66 um
17-03-18 06:01:31.694 -07 000000610 INF: FPGA: Xmit ZDACW 36452\n [Z Motor]
17-03-18 06:01:31.694 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:01:31.704 -07 000000610 INF: FPGA: 'ZDACW 36452' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:31.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:31.704 -07 000000561 INF: FPGA: Recv ZDACR 36452
17-03-18 06:01:31.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:31.824 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.864 -07 000000462 INF: FPGA: Recv ZSGSRD 35268
17-03-18 06:01:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.874 -07 000000591 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:01:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.884 -07 000000462 INF: FPGA: Recv ZSGSRD 35261
17-03-18 06:01:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.894 -07 000000591 INF: FPGA: Recv ZSGSRD 35263
17-03-18 06:01:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:01:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.914 -07 000000591 INF: FPGA: Recv ZSGSRD 35266
17-03-18 06:01:31.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.924 -07 000000462 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:01:31.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.934 -07 000000591 INF: FPGA: Recv ZSGSRD 35264
17-03-18 06:01:31.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.944 -07 000000462 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:01:31.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:31.954 -07 000000591 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:01:31.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:31.964 -07 000000462 INF: FPGA: Recv ZPIEZORD 31003
17-03-18 06:01:31.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:31.974 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-18 06:01:31.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35266 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35267 (-166.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35261 (-166.0 uncal um), Max = 35269 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:01:31.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35266, posNoise = 3, negNoise = 5
17-03-18 06:01:31.974 -07 000000610 INF: Z Motor: After move to -0.166867, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:31.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:01:31.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:31.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:31.974 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:31.974 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:31.974 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:31.974 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:31.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:31.974 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:31.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:01:31.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:31.974 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 06:01:31.974 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:31.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:01:31.984 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:31.984 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:31.984 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:31.994 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:01:31.994 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:01:31.994 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:01:31.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:01:31.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36629 150\n [Camera]
17-03-18 06:01:32.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:01:32.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:32.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:32.644 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:32.644 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:32.644 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:01:32.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:32.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:32.644 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:32.644 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:32.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:01:32.834 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36629 835
17-03-18 06:01:32.984 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:33.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:01:33.024 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:01:33.024 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:33.024 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:01:33.024 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:01:33.024 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:33.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:33.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:33.034 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:01:33.034 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:01:33.204 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:33.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:33.204 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:33.204 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:33.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:01:33.204 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:33.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:33.204 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:33.204 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:33.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:01:33.394 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:33.394 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:33.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36629 150' command took 2 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-18 06:01:33.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:33.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166879617402477. ------
17-03-18 06:01:33.404 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:33.404 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17350 mm
17-03-18 06:01:33.404 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:33.404 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:01:33.404 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:01:33.404 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:33.404 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37902, sync = True, waitForSettling = False)
17-03-18 06:01:33.524 -07 000000480 INF: Z Motor: Moving to -0.173504 mm, started at -0.166880 mm, distance = -6.62 um
17-03-18 06:01:33.524 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 06:01:33.524 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:33.534 -07 000000480 INF: FPGA: Xmit ZDACW 37902\n [Z Motor]
17-03-18 06:01:33.534 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:01:33.534 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 125 ms overall
17-03-18 06:01:33.534 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:33.534 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:01:33.534 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:33.534 -07 000000561 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:01:33.544 -07 000000480 INF: FPGA: 'ZDACW 37902' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:01:33.544 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:33.554 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:33.564 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:33.564 -07 000000462 INF: FPGA: Recv ZDACR 37902
17-03-18 06:01:33.574 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:33.574 -07 000000480 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:01:33.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:01:33.604 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:01:33.604 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:33.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:01:33.604 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:01:33.604 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:33.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:33.614 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:01:33.614 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:01:33.614 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:01:33.744 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:33.744 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-18 06:01:33.924 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 06:01:33.924 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 06:01:33.974 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:33.984 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:01:33.984 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:01:33.984 -07 000000561 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:33.984 -07 000000561 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:01:33.984 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-18 06:01:34.934 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:34.934 -07 000000462 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:01:34.944 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:34.944 -07 000000561 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:34.974 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:34.974 -07 000000561 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:34.974 -07 000000561 INF: Y Motor: Moved to 73.1753 after 1565 ms (table move)
17-03-18 06:01:34.974 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173504 mm (DAC = 37902)
17-03-18 06:01:34.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:34.974 -07 000000012 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:01:34.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:01:34.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:34.984 -07 000000591 INF: FPGA: Recv ZSGSRD 36297
17-03-18 06:01:34.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:34.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:34.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36297
17-03-18 06:01:35.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.004 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.004 -07 000000591 INF: FPGA: Recv ZSGSRD 36295
17-03-18 06:01:35.014 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.014 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.014 -07 000000591 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:01:35.024 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.024 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.024 -07 000000012 INF: FPGA: Recv ZSGSRD 36296
17-03-18 06:01:35.034 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.034 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.034 -07 000000591 INF: FPGA: Recv ZSGSRD 36298
17-03-18 06:01:35.044 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.044 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.044 -07 000000591 INF: FPGA: Recv ZSGSRD 36291
17-03-18 06:01:35.054 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.054 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.054 -07 000000591 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:01:35.064 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.064 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:35.064 -07 000000618 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:01:35.074 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.074 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:35.074 -07 000000480 INF: FPGA: Recv ZPIEZORD 32388
17-03-18 06:01:35.084 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.6 V.
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36298 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36291 (-172.6 uncal um), Max = 36304 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36298, posNoise = 6, negNoise = 7
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: After move to -0.173504, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:01:35.084 -07 000000579 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:35.134 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms
17-03-18 06:01:35.134 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:35.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:35.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:35.134 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:35.134 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:35.134 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:35.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:35.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:35.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:35.144 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:35.144 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:35.144 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:01:35.144 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:01:35.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:35.194 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:01:35.494 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:01:35.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:01:35.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:35.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:35.534 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:35.534 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:35.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:01:35.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:01:35.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:35.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:35.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:01:35.634 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:35.634 -07 000000581 INF: Autofocus start
17-03-18 06:01:35.634 -07 000000581 INF: MeasureProfile start
17-03-18 06:01:35.634 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:35.644 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:35.644 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:35.644 -07 000000581 INF: MeasureProfile done
17-03-18 06:01:35.644 -07 000000581 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 06:01:35.644 -07 000000581 INF: Autofocus finished
17-03-18 06:01:35.844 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:35.844 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:35.844 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173509404332774. ----------
17-03-18 06:01:35.854 -07 000000610 INF: Cycle	144	Tile	17	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:35.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36326, sync = True, waitForSettling = True)
17-03-18 06:01:35.854 -07 000000610 INF: Z Motor: Moving to -0.166290 mm, started at -0.173509 mm, distance = 7.22 um
17-03-18 06:01:35.854 -07 000000610 INF: FPGA: Xmit ZDACW 36326\n [Z Motor]
17-03-18 06:01:35.854 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:01:35.864 -07 000000610 INF: FPGA: 'ZDACW 36326' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:35.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:35.864 -07 000000512 INF: FPGA: Recv ZDACR 36326
17-03-18 06:01:35.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:35.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:36.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.024 -07 000000561 INF: FPGA: Recv ZSGSRD 35175
17-03-18 06:01:36.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.034 -07 000000480 INF: FPGA: Recv ZSGSRD 35184
17-03-18 06:01:36.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.044 -07 000000501 INF: FPGA: Recv ZSGSRD 35170
17-03-18 06:01:36.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.054 -07 000000591 INF: FPGA: Recv ZSGSRD 35174
17-03-18 06:01:36.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:36.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.064 -07 000000606 INF: FPGA: Recv ZSGSRD 35180
17-03-18 06:01:36.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:01:36.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.084 -07 000000512 INF: FPGA: Recv ZSGSRD 35176
17-03-18 06:01:36.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.094 -07 000000591 INF: FPGA: Recv ZSGSRD 35172
17-03-18 06:01:36.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:01:36.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:36.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35174
17-03-18 06:01:36.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:36.124 -07 000000591 INF: FPGA: Recv ZPIEZORD 30892
17-03-18 06:01:36.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:36.134 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.4 V.
17-03-18 06:01:36.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35176 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35176 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35170 (-165.4 uncal um), Max = 35184 (-165.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:01:36.134 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35176, posNoise = 8, negNoise = 6
17-03-18 06:01:36.134 -07 000000610 INF: Z Motor: After move to -0.166290, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:36.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:01:36.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:36.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:36.134 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:36.134 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:36.134 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:36.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:36.134 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:36.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:36.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:36.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:36.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:36.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:36.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:36.134 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:36.144 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:36.144 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:36.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:01:36.144 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:01:36.144 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:01:36.154 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:01:36.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36503 150\n [Camera]
17-03-18 06:01:36.354 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:36.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:36.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:36.804 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:36.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:36.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:36.804 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:36.804 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:36.804 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:36.814 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:36.814 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:36.824 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:36.884 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.019446,
17-03-18 06:01:36.994 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36503 835
17-03-18 06:01:37.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:37.184 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:01:37.184 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:01:37.184 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:37.184 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:37.184 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:01:37.184 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:01:37.184 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:37.194 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:37.194 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:01:37.194 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:01:37.364 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:37.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:37.364 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:37.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:37.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:37.364 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:37.364 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:37.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:01:37.374 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:37.374 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 06:01:37.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:37.554 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:37.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36503 150' command took 2 ms to send, 1393 ms to get response, and 1401 ms overall
17-03-18 06:01:37.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:37.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166301438309718. ------
17-03-18 06:01:37.554 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:37.554 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17228 mm
17-03-18 06:01:37.554 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:37.564 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:37.564 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:01:37.564 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:01:37.564 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:37.564 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:01:37.564 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37634, sync = True, waitForSettling = False)
17-03-18 06:01:37.564 -07 000000606 INF: Z Motor: Moving to -0.172277 mm, started at -0.166301 mm, distance = -5.98 um
17-03-18 06:01:37.574 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:37.574 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:01:37.584 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:01:37.584 -07 000000625 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:37.584 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:37.584 -07 000000625 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:01:37.584 -07 000000606 INF: FPGA: Xmit ZDACW 37634\n [Z Motor]
17-03-18 06:01:37.584 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:01:37.594 -07 000000606 INF: FPGA: 'ZDACW 37634' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:01:37.594 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:37.594 -07 000000591 INF: FPGA: Recv ZDACR 37634
17-03-18 06:01:37.604 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:37.604 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:37.604 -07 000000606 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:01:37.764 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:37.764 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:01:37.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:01:37.764 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:01:37.764 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:37.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:01:37.774 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:01:37.774 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:37.774 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:37.774 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:01:37.774 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:37.784 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:01:37.974 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:01:37.974 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 258 ms to get response, and 397 ms overall
17-03-18 06:01:38.024 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:38.024 -07 000000512 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:01:38.034 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:38.034 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:38.034 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:01:38.034 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.134 mm/sec
17-03-18 06:01:38.984 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:38.984 -07 000000618 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:01:38.994 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:38.994 -07 000000625 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:39.014 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:39.014 -07 000000625 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:01:39.014 -07 000000625 INF: Y Motor: Moved to 74.0078 after 1452 ms (table move)
17-03-18 06:01:39.014 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172277 mm (DAC = 37634)
17-03-18 06:01:39.014 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36104
17-03-18 06:01:39.024 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:01:39.024 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36117
17-03-18 06:01:39.034 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:39.034 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.034 -07 000000012 INF: FPGA: Recv ZSGSRD 36104
17-03-18 06:01:39.044 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.044 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.044 -07 000000012 INF: FPGA: Recv ZSGSRD 36104
17-03-18 06:01:39.054 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.054 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.054 -07 000000501 INF: FPGA: Recv ZSGSRD 36106
17-03-18 06:01:39.064 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.064 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36096
17-03-18 06:01:39.074 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.074 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36111
17-03-18 06:01:39.084 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.084 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.084 -07 000000618 INF: FPGA: Recv ZSGSRD 36111
17-03-18 06:01:39.094 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.094 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.094 -07 000000561 INF: FPGA: Recv ZSGSRD 36107
17-03-18 06:01:39.104 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.104 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:39.104 -07 000000618 INF: FPGA: Recv ZSGSRD 36114
17-03-18 06:01:39.114 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:39.114 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:39.114 -07 000000561 INF: FPGA: Recv ZPIEZORD 32148
17-03-18 06:01:39.124 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.7 V.
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36107 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36106 (-171.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36117 (-171.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36107, posNoise = 10, negNoise = 11
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: After move to -0.172277, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: Settle wait time = 1455 ms, measure time = 103 ms (allowed 150 ms), total time = 1558 ms
17-03-18 06:01:39.124 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:39.174 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 06:01:39.174 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:39.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:39.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:39.174 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:39.174 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:39.174 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:39.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:39.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:39.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:39.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:39.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:39.194 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:01:39.194 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:01:39.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:39.244 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:39.544 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:39.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:39.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:39.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:39.584 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:39.584 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:39.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 06:01:39.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:01:39.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:39.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:39.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:01:39.684 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:39.684 -07 000000462 INF: Autofocus start
17-03-18 06:01:39.684 -07 000000462 INF: MeasureProfile start
17-03-18 06:01:39.684 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:39.694 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:39.694 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:39.694 -07 000000462 INF: MeasureProfile done
17-03-18 06:01:39.694 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:01:39.694 -07 000000462 INF: Autofocus finished
17-03-18 06:01:39.894 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:39.894 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:01:39.894 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172282379813698. ----------
17-03-18 06:01:39.894 -07 000000610 INF: Cycle	144	Tile	18	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:39.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36131, sync = True, waitForSettling = True)
17-03-18 06:01:39.904 -07 000000610 INF: Z Motor: Moving to -0.165397 mm, started at -0.172282 mm, distance = 6.89 um
17-03-18 06:01:39.904 -07 000000610 INF: FPGA: Xmit ZDACW 36131\n [Z Motor]
17-03-18 06:01:39.904 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:01:39.914 -07 000000610 INF: FPGA: 'ZDACW 36131' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:39.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:39.914 -07 000000590 INF: FPGA: Recv ZDACR 36131
17-03-18 06:01:39.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:39.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:40.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.074 -07 000000591 INF: FPGA: Recv ZSGSRD 35041
17-03-18 06:01:40.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:40.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35040
17-03-18 06:01:40.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.094 -07 000000579 INF: FPGA: Recv ZSGSRD 35033
17-03-18 06:01:40.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.104 -07 000000444 INF: FPGA: Recv ZSGSRD 35036
17-03-18 06:01:40.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.114 -07 000000591 INF: FPGA: Recv ZSGSRD 35041
17-03-18 06:01:40.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.124 -07 000000618 INF: FPGA: Recv ZSGSRD 35033
17-03-18 06:01:40.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.134 -07 000000608 INF: FPGA: Recv ZSGSRD 35038
17-03-18 06:01:40.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.144 -07 000000444 INF: FPGA: Recv ZSGSRD 35036
17-03-18 06:01:40.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.154 -07 000000512 INF: FPGA: Recv ZSGSRD 35041
17-03-18 06:01:40.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:40.164 -07 000000012 INF: FPGA: Recv ZSGSRD 35037
17-03-18 06:01:40.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:40.174 -07 000000608 INF: FPGA: Recv ZPIEZORD 30711
17-03-18 06:01:40.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:40.184 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.5 V.
17-03-18 06:01:40.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35038 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35038 (-164.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35033 (-164.5 uncal um), Max = 35041 (-164.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:01:40.184 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35038, posNoise = 3, negNoise = 5
17-03-18 06:01:40.184 -07 000000610 INF: Z Motor: After move to -0.165397, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:40.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:01:40.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:40.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:40.184 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:40.184 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:40.184 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:40.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:40.184 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:40.184 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:40.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:40.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:40.184 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:40.184 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:40.194 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:01:40.194 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:40.194 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:40.194 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:40.204 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:01:40.204 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:01:40.204 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:01:40.204 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:01:40.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36308 150\n [Camera]
17-03-18 06:01:40.414 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:40.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:40.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:40.864 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:40.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:40.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:40.864 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:40.864 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:40.864 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:40.874 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:40.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:41.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36308 835
17-03-18 06:01:41.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:41.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:01:41.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:01:41.244 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:41.244 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:01:41.244 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:01:41.244 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:41.244 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:41.244 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:01:41.244 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:41.254 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:01:41.424 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:41.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:41.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:41.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:41.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 06:01:41.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:41.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:41.424 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:41.424 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:41.424 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 06:01:41.614 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:01:41.614 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:41.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36308 150' command took 2 ms to send, 1391 ms to get response, and 1401 ms overall
17-03-18 06:01:41.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:01:41.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165414897034155. ------
17-03-18 06:01:41.614 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:41.614 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17176 mm
17-03-18 06:01:41.614 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:41.614 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:41.624 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:41.624 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:01:41.624 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 06:01:41.624 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:41.624 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37522, sync = True, waitForSettling = False)
17-03-18 06:01:41.624 -07 000000618 INF: Z Motor: Moving to -0.171765 mm, started at -0.165415 mm, distance = -6.35 um
17-03-18 06:01:41.634 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:41.634 -07 000000608 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:01:41.644 -07 000000618 INF: FPGA: Xmit ZDACW 37522\n [Z Motor]
17-03-18 06:01:41.644 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:01:41.644 -07 000000591 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:41.644 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:41.644 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:01:41.644 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:01:41.654 -07 000000618 INF: FPGA: 'ZDACW 37522' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:01:41.654 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:41.654 -07 000000512 INF: FPGA: Recv ZDACR 37522
17-03-18 06:01:41.664 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:41.664 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:41.664 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:01:41.814 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:01:41.814 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:01:41.814 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:41.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:01:41.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:01:41.824 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:41.824 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:41.824 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:41.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:41.824 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:41.824 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:41.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:01:41.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:01:41.824 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:01:42.034 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:01:42.034 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:01:42.074 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:42.074 -07 000000625 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:01:42.084 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:42.084 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:42.084 -07 000000591 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:01:42.084 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 06:01:42.244 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.02213,
17-03-18 06:01:43.034 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:43.034 -07 000000590 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:01:43.044 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.044 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:43.064 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:43.064 -07 000000591 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:43.064 -07 000000591 INF: Y Motor: Moved to 74.8311 after 1440 ms (table move)
17-03-18 06:01:43.064 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171765 mm (DAC = 37522)
17-03-18 06:01:43.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36024
17-03-18 06:01:43.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:43.074 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.074 -07 000000579 INF: FPGA: Recv ZSGSRD 36026
17-03-18 06:01:43.084 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.084 -07 000000579 INF: FPGA: Recv ZSGSRD 36026
17-03-18 06:01:43.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.094 -07 000000608 INF: FPGA: Recv ZSGSRD 36027
17-03-18 06:01:43.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.104 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36036
17-03-18 06:01:43.114 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.114 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.114 -07 000000606 INF: FPGA: Recv ZSGSRD 36035
17-03-18 06:01:43.124 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.124 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.124 -07 000000480 INF: FPGA: Recv ZSGSRD 36021
17-03-18 06:01:43.134 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.134 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.134 -07 000000581 INF: FPGA: Recv ZSGSRD 36028
17-03-18 06:01:43.144 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.144 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.144 -07 000000608 INF: FPGA: Recv ZSGSRD 36026
17-03-18 06:01:43.154 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:43.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36025
17-03-18 06:01:43.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.164 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:43.164 -07 000000590 INF: FPGA: Recv ZPIEZORD 32057
17-03-18 06:01:43.174 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.725 V. Piezo Error = -8.8 V.
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36027 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36021 (-170.9 uncal um), Max = 36036 (-170.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36027, posNoise = 9, negNoise = 6
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: After move to -0.171765, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-18 06:01:43.174 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:43.224 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 06:01:43.224 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:43.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:43.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:43.224 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:43.224 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:43.224 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:43.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:43.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:43.224 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:43.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:43.234 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:43.244 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:01:43.244 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:01:43.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:43.284 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:43.584 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:43.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:43.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:43.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:01:43.624 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:43.624 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:43.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:01:43.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:01:43.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:43.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:43.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:01:43.824 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:43.824 -07 000000579 INF: Autofocus start
17-03-18 06:01:43.824 -07 000000579 INF: MeasureProfile start
17-03-18 06:01:43.824 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:43.834 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:43.834 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:43.834 -07 000000579 INF: MeasureProfile done
17-03-18 06:01:43.834 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:01:43.834 -07 000000579 INF: Autofocus finished
17-03-18 06:01:44.034 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:44.034 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:44.034 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171768442842357. ----------
17-03-18 06:01:44.034 -07 000000610 INF: Cycle	144	Tile	19	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:44.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36019, sync = True, waitForSettling = True)
17-03-18 06:01:44.044 -07 000000610 INF: Z Motor: Moving to -0.164884 mm, started at -0.171768 mm, distance = 6.88 um
17-03-18 06:01:44.044 -07 000000610 INF: FPGA: Xmit ZDACW 36019\n [Z Motor]
17-03-18 06:01:44.044 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:01:44.054 -07 000000610 INF: FPGA: 'ZDACW 36019' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:01:44.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:44.054 -07 000000512 INF: FPGA: Recv ZDACR 36019
17-03-18 06:01:44.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:44.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.214 -07 000000480 INF: FPGA: Recv ZSGSRD 34955
17-03-18 06:01:44.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.224 -07 000000512 INF: FPGA: Recv ZSGSRD 34960
17-03-18 06:01:44.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.234 -07 000000512 INF: FPGA: Recv ZSGSRD 34956
17-03-18 06:01:44.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.244 -07 000000480 INF: FPGA: Recv ZSGSRD 34955
17-03-18 06:01:44.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.254 -07 000000512 INF: FPGA: Recv ZSGSRD 34959
17-03-18 06:01:44.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.264 -07 000000480 INF: FPGA: Recv ZSGSRD 34957
17-03-18 06:01:44.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.274 -07 000000480 INF: FPGA: Recv ZSGSRD 34957
17-03-18 06:01:44.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.284 -07 000000480 INF: FPGA: Recv ZSGSRD 34956
17-03-18 06:01:44.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.294 -07 000000480 INF: FPGA: Recv ZSGSRD 34949
17-03-18 06:01:44.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:44.304 -07 000000606 INF: FPGA: Recv ZSGSRD 34957
17-03-18 06:01:44.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:44.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:44.324 -07 000000581 INF: FPGA: Recv ZPIEZORD 30647
17-03-18 06:01:44.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:01:44.324 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.496 V. Piezo Error = -9.5 V.
17-03-18 06:01:44.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34956 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34956 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34949 (-164.0 uncal um), Max = 34960 (-164.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:44.324 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34956, posNoise = 4, negNoise = 7
17-03-18 06:01:44.324 -07 000000610 INF: Z Motor: After move to -0.164884, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:44.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:01:44.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:44.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:44.324 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:44.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:44.324 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:44.324 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:44.324 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:44.324 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:44.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:01:44.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:44.324 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:01:44.324 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:44.334 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:01:44.334 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:44.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:01:44.334 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:44.344 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:01:44.344 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:01:44.344 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:01:44.344 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:01:44.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36195 150\n [Camera]
17-03-18 06:01:44.544 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:44.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:44.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:44.994 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:44.994 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:44.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:01:45.004 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:45.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:45.004 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:45.004 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:45.004 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:01:45.184 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36195 835
17-03-18 06:01:45.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:45.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:01:45.374 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:01:45.374 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:45.384 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:01:45.384 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:01:45.384 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:45.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:45.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:01:45.384 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:45.394 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:01:45.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:45.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:45.554 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:45.554 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:45.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:01:45.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:45.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:45.554 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:45.554 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:45.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:01:45.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:45.744 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:45.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36195 150' command took 2 ms to send, 1394 ms to get response, and 1400 ms overall
17-03-18 06:01:45.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:01:45.954 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:01:45.954 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:45.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:01:45.954 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:01:45.954 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:45.954 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:45.954 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:01:45.954 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:01:45.954 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:01:45.964 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:01:46.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:01:46.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:01:46.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:01:46.174 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:01:46.174 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:01:46.174 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 06:01:46.184 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:46.184 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:01:46.684 -07 000000512 INF: FPGA: Recv EMIN
17-03-18 06:01:46.684 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:01:46.684 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:01:46.684 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 06:01:46.694 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:46.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:01:46.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164888111638531. ------
17-03-18 06:01:46.694 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:46.694 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13932 mm
17-03-18 06:01:46.694 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:46.694 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:01:46.694 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 06:01:46.704 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:46.704 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-18 06:01:46.704 -07 000000581 INF: Z Motor: Moving to -0.139322 mm, started at -0.164888 mm, distance = 25.57 um
17-03-18 06:01:46.704 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:46.704 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 06:01:46.704 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 7 ms overall
17-03-18 06:01:46.714 -07 000000581 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-18 06:01:46.714 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:46.714 -07 000000625 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:46.714 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:01:46.714 -07 000000625 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:01:46.714 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:01:46.724 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:46.724 -07 000000581 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:01:46.734 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:01:46.744 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:46.744 -07 000000480 INF: FPGA: Recv ZDACR 30435
17-03-18 06:01:46.754 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:46.754 -07 000000581 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:01:46.824 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:46.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:46.924 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:46.924 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 06:01:47.604 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.983999,
17-03-18 06:01:48.354 -07 000000579 INF: FPGA: Recv YMVTO 122701 23905
17-03-18 06:01:48.354 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1639 ms overall
17-03-18 06:01:48.354 -07 000000625 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:01:48.354 -07 000000625 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23905 steps (14.941 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:01:48.364 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 06:01:51.214 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:51.214 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:01:51.224 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.224 -07 000000625 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:51.264 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:51.264 -07 000000625 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 06:01:51.264 -07 000000625 INF: Y Motor: Moved to 59.9102 after 4562 ms
17-03-18 06:01:51.264 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-18 06:01:51.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.264 -07 000000606 INF: FPGA: Recv ZSGSRD 30983
17-03-18 06:01:51.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:51.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.274 -07 000000512 INF: FPGA: Recv ZSGSRD 30980
17-03-18 06:01:51.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.284 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.284 -07 000000561 INF: FPGA: Recv ZSGSRD 30971
17-03-18 06:01:51.294 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.294 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.294 -07 000000581 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:01:51.304 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.304 -07 000000606 INF: FPGA: Recv ZSGSRD 30981
17-03-18 06:01:51.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.314 -07 000000591 INF: FPGA: Recv ZSGSRD 30978
17-03-18 06:01:51.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.324 -07 000000581 INF: FPGA: Recv ZSGSRD 30977
17-03-18 06:01:51.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.334 -07 000000608 INF: FPGA: Recv ZSGSRD 30976
17-03-18 06:01:51.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.344 -07 000000012 INF: FPGA: Recv ZSGSRD 30984
17-03-18 06:01:51.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:51.354 -07 000000606 INF: FPGA: Recv ZSGSRD 30981
17-03-18 06:01:51.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.364 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:51.364 -07 000000579 INF: FPGA: Recv ZPIEZORD 26457
17-03-18 06:01:51.374 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.9 V.
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30979 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30979 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30971 (-138.5 uncal um), Max = 30984 (-138.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30979, posNoise = 5, negNoise = 8
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: After move to -0.139322, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: Settle wait time = 4564 ms, measure time = 106 ms (allowed 150 ms), total time = 4670 ms
17-03-18 06:01:51.374 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:51.424 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 06:01:51.424 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:51.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:51.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:51.424 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:51.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:51.424 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:51.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:51.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:51.424 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:01:51.454 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:01:51.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:51.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:01:51.454 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:51.464 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:01:51.464 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:01:51.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:51.514 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:51.814 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:51.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:51.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:51.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:51.824 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:51.854 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:51.854 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:51.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:01:51.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 06:01:51.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:51.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:51.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:01:51.944 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:51.954 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:51.954 -07 000000590 INF: Image SNR check: start
17-03-18 06:01:51.954 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:51.964 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:51.964 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:51.974 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=116.31]
17-03-18 06:01:51.974 -07 000000590 INF: Autofocus start
17-03-18 06:01:51.974 -07 000000590 INF: MeasureProfile start
17-03-18 06:01:51.984 -07 000000590 INF: MeasureProfile done
17-03-18 06:01:51.984 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:01:51.984 -07 000000590 INF: Autofocus finished
17-03-18 06:01:52.164 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:52.164 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:52.164 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139339019950748. ----------
17-03-18 06:01:52.164 -07 000000610 INF: Cycle	144	Tile	1	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:52.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-18 06:01:52.174 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139339 mm, distance = 6.85 um
17-03-18 06:01:52.174 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-18 06:01:52.174 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:01:52.184 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:52.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:52.184 -07 000000591 INF: FPGA: Recv ZDACR 28943
17-03-18 06:01:52.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.344 -07 000000579 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:01:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:01:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:01:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.374 -07 000000579 INF: FPGA: Recv ZSGSRD 29906
17-03-18 06:01:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:01:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29917
17-03-18 06:01:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29909
17-03-18 06:01:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:01:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:01:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:52.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29915
17-03-18 06:01:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:52.444 -07 000000606 INF: FPGA: Recv ZPIEZORD 25333
17-03-18 06:01:52.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:52.454 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.0 V.
17-03-18 06:01:52.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29913 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29906 (-131.7 uncal um), Max = 29917 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:52.454 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29913, posNoise = 4, negNoise = 7
17-03-18 06:01:52.454 -07 000000610 INF: Z Motor: After move to -0.132493, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:52.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:01:52.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:52.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:52.454 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:52.454 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:52.454 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:52.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:52.454 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:52.454 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:52.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:52.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:52.454 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:52.454 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:01:52.464 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:01:52.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:52.474 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:01:52.474 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:01:52.484 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:01:52.484 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:52.484 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:01:52.484 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:52.494 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:01:52.494 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 06:01:52.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29119 150\n [Camera]
17-03-18 06:01:52.694 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:52.964 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.999021,
17-03-18 06:01:53.144 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:53.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:53.144 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:53.144 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:53.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:53.144 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:53.144 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:53.144 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:01:53.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:53.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:01:53.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29119 835
17-03-18 06:01:53.484 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:53.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:01:53.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:01:53.524 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:53.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:01:53.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:01:53.524 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:53.524 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:01:53.534 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:01:53.534 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:53.534 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:01:53.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:01:53.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:01:53.704 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:53.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:01:53.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:01:53.714 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:53.714 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:53.824 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:01:53.824 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:53.824 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:01:53.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:01:53.894 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:53.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29119 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:01:53.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:01:53.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132490809807631. ------
17-03-18 06:01:53.894 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:53.894 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13886 mm
17-03-18 06:01:53.904 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:53.904 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:01:53.904 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:01:53.904 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30333, sync = True, waitForSettling = False)
17-03-18 06:01:53.904 -07 000000590 INF: Z Motor: Moving to -0.138856 mm, started at -0.132491 mm, distance = -6.36 um
17-03-18 06:01:53.904 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:53.914 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:53.914 -07 000000590 INF: FPGA: Xmit ZDACW 30333\n [Z Motor]
17-03-18 06:01:53.914 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:01:53.924 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:53.924 -07 000000590 INF: FPGA: 'ZDACW 30333' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:01:53.924 -07 000000012 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:01:53.934 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:53.934 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:01:53.934 -07 000000608 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:53.934 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:53.934 -07 000000608 INF: Y Motor: Moving 1332 steps0
17-03-18 06:01:53.944 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:53.944 -07 000000012 INF: FPGA: Recv ZDACR 30333
17-03-18 06:01:53.954 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:53.954 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:53.954 -07 000000590 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:01:54.134 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:54.134 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:01:54.214 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:01:54.214 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 06:01:54.214 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:54.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:01:54.214 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:01:54.214 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:54.214 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:54.214 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:54.214 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 06:01:54.224 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-18 06:01:54.334 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:01:54.334 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:01:54.374 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:54.374 -07 000000462 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:01:54.384 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:54.384 -07 000000608 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:54.384 -07 000000608 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:01:54.384 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.081 mm/sec
17-03-18 06:01:55.334 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:55.334 -07 000000462 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:01:55.344 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:55.344 -07 000000608 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:55.374 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:55.374 -07 000000608 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:55.374 -07 000000608 INF: Y Motor: Moved to 60.7319 after 1472 ms (table move)
17-03-18 06:01:55.374 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138856 mm (DAC = 30333)
17-03-18 06:01:55.374 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30916
17-03-18 06:01:55.384 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:01:55.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:01:55.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:01:55.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.394 -07 000000608 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:01:55.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.404 -07 000000608 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:01:55.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.414 -07 000000608 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:01:55.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.424 -07 000000581 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:01:55.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.434 -07 000000590 INF: FPGA: Recv ZSGSRD 30899
17-03-18 06:01:55.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.444 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.444 -07 000000012 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:01:55.454 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:01:55.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:55.464 -07 000000581 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:01:55.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.474 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:55.474 -07 000000581 INF: FPGA: Recv ZPIEZORD 26668
17-03-18 06:01:55.484 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30906 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30899 (-138.0 uncal um), Max = 30916 (-138.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 10, negNoise = 7
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: After move to -0.138856, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: Settle wait time = 1475 ms, measure time = 101 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:01:55.484 -07 000000625 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:55.534 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:01:55.534 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:55.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:55.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:55.534 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:55.534 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:55.534 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:55.534 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:55.534 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:55.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:55.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:55.544 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:55.554 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:01:55.554 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:01:55.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:55.604 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 06:01:55.904 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 06:01:55.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 06:01:55.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:55.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:01:55.934 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:55.944 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:55.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:01:56.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:01:56.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:56.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:01:56.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:01:56.044 -07 000000579 INF: Autofocus start
17-03-18 06:01:56.044 -07 000000579 INF: MeasureProfile start
17-03-18 06:01:56.044 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:56.044 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:56.054 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:01:56.054 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:01:56.054 -07 000000579 INF: MeasureProfile done
17-03-18 06:01:56.054 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:01:56.054 -07 000000579 INF: Autofocus finished
17-03-18 06:01:56.254 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:01:56.254 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:01:56.254 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138870052464399. ----------
17-03-18 06:01:56.254 -07 000000610 INF: Cycle	144	Tile	2	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:01:56.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28857, sync = True, waitForSettling = True)
17-03-18 06:01:56.264 -07 000000610 INF: Z Motor: Moving to -0.132099 mm, started at -0.138870 mm, distance = 6.77 um
17-03-18 06:01:56.264 -07 000000610 INF: FPGA: Xmit ZDACW 28857\n [Z Motor]
17-03-18 06:01:56.264 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:01:56.274 -07 000000610 INF: FPGA: 'ZDACW 28857' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:56.274 -07 000000579 INF: FPGA: Recv ZDACR 28857
17-03-18 06:01:56.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:01:56.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.434 -07 000000512 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:01:56.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:56.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:01:56.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.454 -07 000000608 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:01:56.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.464 -07 000000012 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:01:56.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.474 -07 000000561 INF: FPGA: Recv ZSGSRD 29856
17-03-18 06:01:56.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.484 -07 000000561 INF: FPGA: Recv ZSGSRD 29856
17-03-18 06:01:56.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.494 -07 000000501 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:01:56.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.504 -07 000000591 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:01:56.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.514 -07 000000012 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:01:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:56.524 -07 000000591 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:01:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:56.534 -07 000000606 INF: FPGA: Recv ZPIEZORD 25323
17-03-18 06:01:56.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:56.544 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.9 V.
17-03-18 06:01:56.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29854 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29851 (-131.3 uncal um), Max = 29857 (-131.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:01:56.544 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29854, posNoise = 3, negNoise = 3
17-03-18 06:01:56.544 -07 000000610 INF: Z Motor: After move to -0.132099, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:56.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:01:56.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:56.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:56.544 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:56.544 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:01:56.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:56.544 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:01:56.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:01:56.544 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:56.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:56.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:01:56.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:01:56.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:01:56.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:56.544 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:01:56.554 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:01:56.554 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:01:56.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:01:56.564 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:01:56.564 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:01:56.564 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:01:56.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29034 150\n [Camera]
17-03-18 06:01:56.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:01:56.824 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:01:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:01:57.214 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:01:57.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:01:57.214 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:57.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:01:57.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:01:57.224 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:57.224 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:57.224 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:57.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-18 06:01:57.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:01:57.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29034 835
17-03-18 06:01:57.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:01:57.624 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:01:57.624 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:01:57.624 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:57.624 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:57.624 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:01:57.624 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:01:57.624 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:01:57.624 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:57.624 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:01:57.634 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:01:57.774 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:01:57.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:01:57.774 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:01:57.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:01:57.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:01:57.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:01:57.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:01:57.784 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:01:57.784 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:01:57.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:01:57.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:01:57.974 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:01:57.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29034 150' command took 2 ms to send, 1390 ms to get response, and 1401 ms overall
17-03-18 06:01:57.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:01:57.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132111781291267. ------
17-03-18 06:01:57.974 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:01:57.974 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13898 mm
17-03-18 06:01:57.974 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:01:57.974 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:01:57.974 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30360, sync = True, waitForSettling = False)
17-03-18 06:01:57.974 -07 000000608 INF: Z Motor: Moving to -0.138979 mm, started at -0.132112 mm, distance = -6.87 um
17-03-18 06:01:57.974 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:01:57.984 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:01:57.984 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:01:57.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:57.984 -07 000000012 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:01:57.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:57.994 -07 000000512 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:57.994 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:01:57.994 -07 000000512 INF: Y Motor: Moving 1345 steps-22
17-03-18 06:01:57.994 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:01:58.004 -07 000000608 INF: FPGA: Xmit ZDACW 30360\n [Z Motor]
17-03-18 06:01:58.004 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:01:58.014 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:01:58.014 -07 000000608 INF: FPGA: 'ZDACW 30360' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:01:58.034 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:01:58.034 -07 000000561 INF: FPGA: Recv ZDACR 30360
17-03-18 06:01:58.044 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:01:58.044 -07 000000608 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 06:01:58.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:01:58.184 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:01:58.184 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:58.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:01:58.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:01:58.184 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:01:58.184 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:58.184 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:01:58.184 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:01:58.194 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:01:58.194 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:01:58.194 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:01:58.344 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.979922,
17-03-18 06:01:58.384 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:01:58.384 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:01:58.434 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:58.444 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:01:58.444 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:01:58.444 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:58.444 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:01:58.444 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:01:59.394 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:01:59.394 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:01:59.404 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:01:59.404 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:01:59.434 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:01:59.434 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:01:59.434 -07 000000512 INF: Y Motor: Moved to 61.5625 after 1453 ms (table move)
17-03-18 06:01:59.434 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138979 mm (DAC = 30360)
17-03-18 06:01:59.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.434 -07 000000591 INF: FPGA: Recv ZSGSRD 30926
17-03-18 06:01:59.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:01:59.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30933
17-03-18 06:01:59.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.454 -07 000000561 INF: FPGA: Recv ZSGSRD 30923
17-03-18 06:01:59.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30928
17-03-18 06:01:59.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.474 -07 000000561 INF: FPGA: Recv ZSGSRD 30917
17-03-18 06:01:59.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30915
17-03-18 06:01:59.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.494 -07 000000561 INF: FPGA: Recv ZSGSRD 30929
17-03-18 06:01:59.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.504 -07 000000591 INF: FPGA: Recv ZSGSRD 30923
17-03-18 06:01:59.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.514 -07 000000561 INF: FPGA: Recv ZSGSRD 30932
17-03-18 06:01:59.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:01:59.524 -07 000000591 INF: FPGA: Recv ZSGSRD 30930
17-03-18 06:01:59.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.534 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:01:59.534 -07 000000561 INF: FPGA: Recv ZPIEZORD 26765
17-03-18 06:01:59.544 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.1 V.
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30926 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30927 (-138.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30933 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30926, posNoise = 7, negNoise = 11
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: After move to -0.138979, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: Settle wait time = 1456 ms, measure time = 105 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:01:59.544 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:01:59.594 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:01:59.594 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:01:59.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:01:59.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:01:59.594 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:01:59.594 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:01:59.594 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:01:59.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:01:59.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:01:59.594 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:01:59.604 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:01:59.604 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:01:59.614 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:01:59.614 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:01:59.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:01:59.654 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:01:59.954 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:01:59.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:01:59.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:01:59.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) start.
17-03-18 06:01:59.994 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:01:59.994 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:01:59.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:02:00.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1445873368, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:02:00.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:00.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:00.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:00.094 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:00.094 -07 000000444 INF: Autofocus start
17-03-18 06:02:00.094 -07 000000444 INF: MeasureProfile start
17-03-18 06:02:00.104 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:00.104 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:02:00.104 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:00.114 -07 000000444 INF: MeasureProfile done
17-03-18 06:02:00.114 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:02:00.114 -07 000000444 INF: Autofocus finished
17-03-18 06:02:00.304 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:00.304 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 06:02:00.314 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138998536707234. ----------
17-03-18 06:02:00.314 -07 000000610 INF: Cycle	144	Tile	3	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:00.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28867, sync = True, waitForSettling = True)
17-03-18 06:02:00.314 -07 000000610 INF: Z Motor: Moving to -0.132145 mm, started at -0.138999 mm, distance = 6.85 um
17-03-18 06:02:00.314 -07 000000610 INF: FPGA: Xmit ZDACW 28867\n [Z Motor]
17-03-18 06:02:00.314 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:02:00.324 -07 000000610 INF: FPGA: 'ZDACW 28867' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:00.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:00.324 -07 000000608 INF: FPGA: Recv ZDACR 28867
17-03-18 06:02:00.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:00.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29859
17-03-18 06:02:00.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:00.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.494 -07 000000608 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:02:00.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.504 -07 000000608 INF: FPGA: Recv ZSGSRD 29858
17-03-18 06:02:00.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.514 -07 000000608 INF: FPGA: Recv ZSGSRD 29860
17-03-18 06:02:00.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.524 -07 000000608 INF: FPGA: Recv ZSGSRD 29866
17-03-18 06:02:00.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.534 -07 000000608 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:02:00.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.544 -07 000000608 INF: FPGA: Recv ZSGSRD 29856
17-03-18 06:02:00.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.554 -07 000000608 INF: FPGA: Recv ZSGSRD 29867
17-03-18 06:02:00.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.564 -07 000000608 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:02:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:00.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29858
17-03-18 06:02:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:00.584 -07 000000608 INF: FPGA: Recv ZPIEZORD 25345
17-03-18 06:02:00.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:00.594 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.9 V.
17-03-18 06:02:00.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29859 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29867 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:00.594 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29859, posNoise = 8, negNoise = 5
17-03-18 06:02:00.594 -07 000000610 INF: Z Motor: After move to -0.132145, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:00.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:02:00.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:00.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:00.594 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:00.594 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:00.594 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:00.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:00.594 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:00.594 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:00.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:00.594 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:00.594 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:00.594 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:00.604 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:00.604 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:00.604 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:00.604 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:00.614 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:02:00.614 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:02:00.614 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:02:00.614 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:02:00.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29044 150\n [Camera]
17-03-18 06:02:00.814 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:01.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:01.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:01.264 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:01.264 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:01.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:02:01.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:01.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:01.264 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:01.264 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:01.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:02:01.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29044 835
17-03-18 06:02:01.604 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 986
17-03-18 06:02:01.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:02:01.644 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:02:01.644 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:01.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:02:01.644 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:02:01.644 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:01.644 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:01.654 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:01.654 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:02:01.654 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:02:01.824 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:01.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:01.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:01.824 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:01.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:01.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:02:01.824 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:01.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:01.824 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:01.824 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:01.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:02:02.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:02.014 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:02.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29044 150' command took 2 ms to send, 1395 ms to get response, and 1401 ms overall
17-03-18 06:02:02.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:02.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132143902351975. ------
17-03-18 06:02:02.024 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13857 mm
17-03-18 06:02:02.024 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:02.024 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:02.024 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:02.024 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:02:02.024 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:02:02.024 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30272, sync = True, waitForSettling = False)
17-03-18 06:02:02.024 -07 000000012 INF: Z Motor: Moving to -0.138576 mm, started at -0.132144 mm, distance = -6.43 um
17-03-18 06:02:02.034 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:02.034 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:02.034 -07 000000561 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:02:02.044 -07 000000012 INF: FPGA: Xmit ZDACW 30272\n [Z Motor]
17-03-18 06:02:02.044 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:02:02.044 -07 000000608 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:02.044 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 06:02:02.044 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:02.044 -07 000000608 INF: Y Motor: Moving 1343 steps-21
17-03-18 06:02:02.054 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:02.054 -07 000000012 INF: FPGA: 'ZDACW 30272' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:02:02.064 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:02.074 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:02.074 -07 000000625 INF: FPGA: Recv ZDACR 30272
17-03-18 06:02:02.084 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:02.084 -07 000000012 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:02:02.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:02:02.224 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:02:02.224 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:02.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:02:02.224 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:02:02.224 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:02.234 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:02.234 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:02.234 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:02:02.234 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:02:02.254 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:02.254 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:02:02.434 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:02:02.434 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:02:02.484 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:02.494 -07 000000512 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:02:02.494 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:02:02.494 -07 000000608 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:02.494 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:02:02.494 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 06:02:03.444 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:03.444 -07 000000606 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:02:03.454 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.454 -07 000000608 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:03.484 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:03.484 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:03.484 -07 000000608 INF: Y Motor: Moved to 62.3940 after 1456 ms (table move)
17-03-18 06:02:03.484 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138576 mm (DAC = 30272)
17-03-18 06:02:03.484 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.484 -07 000000501 INF: FPGA: Recv ZSGSRD 30867
17-03-18 06:02:03.494 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:02:03.494 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.494 -07 000000608 INF: FPGA: Recv ZSGSRD 30863
17-03-18 06:02:03.504 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.504 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.504 -07 000000012 INF: FPGA: Recv ZSGSRD 30859
17-03-18 06:02:03.514 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.514 -07 000000608 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:02:03.524 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.524 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:02:03.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.534 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30870
17-03-18 06:02:03.544 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.544 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.544 -07 000000561 INF: FPGA: Recv ZSGSRD 30867
17-03-18 06:02:03.554 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.554 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.554 -07 000000512 INF: FPGA: Recv ZSGSRD 30862
17-03-18 06:02:03.564 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.564 -07 000000444 INF: FPGA: Recv ZSGSRD 30863
17-03-18 06:02:03.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:03.574 -07 000000606 INF: FPGA: Recv ZSGSRD 30861
17-03-18 06:02:03.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.584 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:03.584 -07 000000625 INF: FPGA: Recv ZPIEZORD 26673
17-03-18 06:02:03.594 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.2 V.
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30862 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30854 (-137.7 uncal um), Max = 30870 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30862, posNoise = 8, negNoise = 8
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: After move to -0.138576, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:02:03.594 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:03.644 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 06:02:03.644 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:03.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:03.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:03.644 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:03.644 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:03.644 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:03.644 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:03.644 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:03.644 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:03.654 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:03.654 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:03.664 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:02:03.664 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:02:03.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:03.704 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.956714,
17-03-18 06:02:03.714 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:04.004 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:04.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:04.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:04.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-18 06:02:04.044 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:04.054 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:04.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:02:04.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:02:04.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:04.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:04.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:02:04.154 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:04.154 -07 000000608 INF: Autofocus start
17-03-18 06:02:04.154 -07 000000608 INF: MeasureProfile start
17-03-18 06:02:04.154 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:04.164 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:04.164 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:04.164 -07 000000608 INF: MeasureProfile done
17-03-18 06:02:04.174 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:02:04.174 -07 000000608 INF: Autofocus finished
17-03-18 06:02:04.364 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:04.364 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:04.364 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.138587387130162. ----------
17-03-18 06:02:04.364 -07 000000610 INF: Cycle	144	Tile	4	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:04.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28796, sync = True, waitForSettling = True)
17-03-18 06:02:04.374 -07 000000610 INF: Z Motor: Moving to -0.131820 mm, started at -0.138587 mm, distance = 6.77 um
17-03-18 06:02:04.374 -07 000000610 INF: FPGA: Xmit ZDACW 28796\n [Z Motor]
17-03-18 06:02:04.374 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:02:04.384 -07 000000610 INF: FPGA: 'ZDACW 28796' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:04.384 -07 000000480 INF: FPGA: Recv ZDACR 28796
17-03-18 06:02:04.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:04.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.544 -07 000000012 INF: FPGA: Recv ZSGSRD 29808
17-03-18 06:02:04.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:04.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.554 -07 000000012 INF: FPGA: Recv ZSGSRD 29813
17-03-18 06:02:04.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.564 -07 000000618 INF: FPGA: Recv ZSGSRD 29805
17-03-18 06:02:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.574 -07 000000561 INF: FPGA: Recv ZSGSRD 29811
17-03-18 06:02:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29809
17-03-18 06:02:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29808
17-03-18 06:02:04.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.604 -07 000000012 INF: FPGA: Recv ZSGSRD 29804
17-03-18 06:02:04.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.614 -07 000000444 INF: FPGA: Recv ZSGSRD 29806
17-03-18 06:02:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.624 -07 000000012 INF: FPGA: Recv ZSGSRD 29808
17-03-18 06:02:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:04.634 -07 000000444 INF: FPGA: Recv ZSGSRD 29808
17-03-18 06:02:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:04.644 -07 000000012 INF: FPGA: Recv ZPIEZORD 25320
17-03-18 06:02:04.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:04.654 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.8 V.
17-03-18 06:02:04.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29804 (-131.0 uncal um), Max = 29813 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:02:04.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 5, negNoise = 4
17-03-18 06:02:04.654 -07 000000610 INF: Z Motor: After move to -0.131820, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:04.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:02:04.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:04.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:04.654 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:04.654 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:04.654 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:04.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:04.654 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:04.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:04.654 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:02:04.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:04.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:02:04.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:04.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:04.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:04.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:04.654 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:04.664 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:02:04.664 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:04.664 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:04.664 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:04.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28973 150\n [Camera]
17-03-18 06:02:04.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:05.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:05.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:05.324 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:05.324 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:05.324 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:02:05.324 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:05.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:05.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:05.324 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:05.324 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:02:05.514 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28973 835
17-03-18 06:02:05.664 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:05.704 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:02:05.704 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:02:05.704 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:05.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:02:05.704 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:02:05.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:05.704 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:05.704 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:02:05.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:05.714 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:02:05.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:05.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:05.884 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:05.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:05.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:02:05.884 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:05.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:05.884 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:05.884 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:05.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 06:02:06.074 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:06.074 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:06.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28973 150' command took 2 ms to send, 1393 ms to get response, and 1401 ms overall
17-03-18 06:02:06.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:06.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.131816267532746. ------
17-03-18 06:02:06.074 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:06.074 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13853 mm
17-03-18 06:02:06.074 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:06.084 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = False)
17-03-18 06:02:06.084 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:06.084 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:02:06.084 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:02:06.084 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:06.084 -07 000000561 INF: Z Motor: Moving to -0.138531 mm, started at -0.131816 mm, distance = -6.71 um
17-03-18 06:02:06.084 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:02:06.084 -07 000000606 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:02:06.094 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:06.094 -07 000000608 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:06.094 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:06.094 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:06.094 -07 000000608 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:02:06.104 -07 000000561 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-18 06:02:06.104 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:02:06.114 -07 000000561 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:02:06.114 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:06.124 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:06.124 -07 000000012 INF: FPGA: Recv ZDACR 30262
17-03-18 06:02:06.134 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:06.134 -07 000000561 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:02:06.284 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:02:06.284 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:02:06.284 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:06.284 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:02:06.284 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:02:06.284 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:06.294 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:06.294 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:06.294 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 06:02:06.294 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 13 ms.
17-03-18 06:02:06.294 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:02:06.294 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:02:06.484 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:02:06.484 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:02:06.564 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:06.564 -07 000000581 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:02:06.574 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:02:06.574 -07 000000608 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:06.574 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:02:06.574 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.128 mm/sec
17-03-18 06:02:06.824 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:07.524 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:07.524 -07 000000501 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:02:07.534 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.534 -07 000000608 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:07.564 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:07.564 -07 000000608 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:02:07.564 -07 000000608 INF: Y Motor: Moved to 63.2227 after 1479 ms (table move)
17-03-18 06:02:07.564 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138531 mm (DAC = 30262)
17-03-18 06:02:07.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.574 -07 000000012 INF: FPGA: Recv ZSGSRD 30863
17-03-18 06:02:07.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:02:07.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.574 -07 000000480 INF: FPGA: Recv ZSGSRD 30855
17-03-18 06:02:07.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.584 -07 000000012 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:02:07.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.594 -07 000000480 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:02:07.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.604 -07 000000608 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:02:07.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.614 -07 000000625 INF: FPGA: Recv ZSGSRD 30858
17-03-18 06:02:07.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.624 -07 000000480 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:02:07.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.634 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.634 -07 000000501 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:02:07.644 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.644 -07 000000444 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:02:07.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:07.654 -07 000000625 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:02:07.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.664 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:07.664 -07 000000581 INF: FPGA: Recv ZPIEZORD 26679
17-03-18 06:02:07.674 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.2 V.
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30855 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30850 (-137.7 uncal um), Max = 30863 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30855, posNoise = 8, negNoise = 5
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: After move to -0.138531, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:02:07.674 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:07.724 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 06:02:07.724 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:07.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:07.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:07.724 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:07.724 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:07.724 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:07.724 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:07.724 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:07.724 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:07.734 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:07.734 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:07.744 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:02:07.744 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:02:07.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:07.784 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:08.084 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:08.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:08.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:08.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:02:08.124 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:08.124 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:08.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:02:08.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:02:08.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:08.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:08.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:08.224 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:08.224 -07 000000501 INF: Autofocus start
17-03-18 06:02:08.224 -07 000000501 INF: MeasureProfile start
17-03-18 06:02:08.224 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:08.234 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:08.234 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:08.234 -07 000000501 INF: MeasureProfile done
17-03-18 06:02:08.234 -07 000000501 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 06:02:08.234 -07 000000501 INF: Autofocus finished
17-03-18 06:02:08.434 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:08.434 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:08.434 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138542417645169. ----------
17-03-18 06:02:08.434 -07 000000610 INF: Cycle	144	Tile	5	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:08.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28706, sync = True, waitForSettling = True)
17-03-18 06:02:08.444 -07 000000610 INF: Z Motor: Moving to -0.131408 mm, started at -0.138542 mm, distance = 7.13 um
17-03-18 06:02:08.444 -07 000000610 INF: FPGA: Xmit ZDACW 28706\n [Z Motor]
17-03-18 06:02:08.444 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:02:08.454 -07 000000610 INF: FPGA: 'ZDACW 28706' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:08.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:08.454 -07 000000581 INF: FPGA: Recv ZDACR 28706
17-03-18 06:02:08.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:08.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.614 -07 000000444 INF: FPGA: Recv ZSGSRD 29740
17-03-18 06:02:08.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.624 -07 000000581 INF: FPGA: Recv ZSGSRD 29747
17-03-18 06:02:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.634 -07 000000606 INF: FPGA: Recv ZSGSRD 29744
17-03-18 06:02:08.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.644 -07 000000581 INF: FPGA: Recv ZSGSRD 29746
17-03-18 06:02:08.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.654 -07 000000608 INF: FPGA: Recv ZSGSRD 29749
17-03-18 06:02:08.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.664 -07 000000480 INF: FPGA: Recv ZSGSRD 29747
17-03-18 06:02:08.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.674 -07 000000512 INF: FPGA: Recv ZSGSRD 29739
17-03-18 06:02:08.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.684 -07 000000480 INF: FPGA: Recv ZSGSRD 29744
17-03-18 06:02:08.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29740
17-03-18 06:02:08.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:08.704 -07 000000480 INF: FPGA: Recv ZSGSRD 29745
17-03-18 06:02:08.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:08.714 -07 000000606 INF: FPGA: Recv ZPIEZORD 25247
17-03-18 06:02:08.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:08.724 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.9 V.
17-03-18 06:02:08.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29744 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29744 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29739 (-130.6 uncal um), Max = 29749 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:08.724 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29744, posNoise = 5, negNoise = 5
17-03-18 06:02:08.724 -07 000000610 INF: Z Motor: After move to -0.131408, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:08.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:02:08.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:08.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:08.724 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:08.724 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:08.724 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:08.724 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:08.724 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:08.724 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:08.724 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:08.724 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:08.724 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:08.724 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:08.734 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:08.734 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:08.734 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:08.734 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:08.744 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:08.744 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:08.744 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:02:08.744 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:08.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28883 150\n [Camera]
17-03-18 06:02:08.954 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:09.064 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.973092,
17-03-18 06:02:09.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:09.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:09.404 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:09.404 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:09.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:02:09.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:09.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:09.404 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:09.404 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:09.404 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:02:09.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28883 835
17-03-18 06:02:09.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:09.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:02:09.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:02:09.784 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:09.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:02:09.784 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:02:09.784 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:09.794 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:09.794 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:09.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:02:09.804 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:02:09.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:09.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:09.964 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:09.964 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:09.964 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:02:09.964 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:09.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:09.964 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:09.964 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:09.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:02:10.154 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:10.154 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:10.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28883 150' command took 2 ms to send, 1391 ms to get response, and 1408 ms overall
17-03-18 06:02:10.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:10.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131405117955673. ------
17-03-18 06:02:10.154 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:10.154 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13787 mm
17-03-18 06:02:10.154 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:10.164 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:10.164 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:02:10.164 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:10.164 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:02:10.164 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:02:10.164 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30117, sync = True, waitForSettling = False)
17-03-18 06:02:10.164 -07 000000462 INF: Z Motor: Moving to -0.137867 mm, started at -0.131405 mm, distance = -6.46 um
17-03-18 06:02:10.174 -07 000000462 INF: FPGA: Xmit ZDACW 30117\n [Z Motor]
17-03-18 06:02:10.174 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:02:10.184 -07 000000462 INF: FPGA: 'ZDACW 30117' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:02:10.184 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:10.184 -07 000000625 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:02:10.194 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:02:10.194 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:10.194 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:10.194 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:02:10.194 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:10.194 -07 000000012 INF: FPGA: Recv ZDACR 30117
17-03-18 06:02:10.204 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:10.204 -07 000000462 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:02:10.204 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:10.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:02:10.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:02:10.364 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:10.364 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:10.364 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:02:10.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:02:10.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:02:10.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:10.374 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:10.374 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:10.374 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:02:10.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:02:10.574 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:02:10.574 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:02:10.634 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:10.634 -07 000000579 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:02:10.644 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:10.644 -07 000000512 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:10.644 -07 000000512 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:02:10.644 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 06:02:11.594 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:11.594 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:02:11.604 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:11.604 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:11.634 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:11.634 -07 000000512 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:02:11.634 -07 000000512 INF: Y Motor: Moved to 64.0562 after 1469 ms (table move)
17-03-18 06:02:11.634 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137867 mm (DAC = 30117)
17-03-18 06:02:11.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.634 -07 000000480 INF: FPGA: Recv ZSGSRD 30757
17-03-18 06:02:11.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:11.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.644 -07 000000462 INF: FPGA: Recv ZSGSRD 30743
17-03-18 06:02:11.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.654 -07 000000625 INF: FPGA: Recv ZSGSRD 30746
17-03-18 06:02:11.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.664 -07 000000462 INF: FPGA: Recv ZSGSRD 30741
17-03-18 06:02:11.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.674 -07 000000561 INF: FPGA: Recv ZSGSRD 30753
17-03-18 06:02:11.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.684 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.684 -07 000000462 INF: FPGA: Recv ZSGSRD 30751
17-03-18 06:02:11.694 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.694 -07 000000625 INF: FPGA: Recv ZSGSRD 30757
17-03-18 06:02:11.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.704 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.704 -07 000000608 INF: FPGA: Recv ZSGSRD 30758
17-03-18 06:02:11.714 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.714 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.714 -07 000000625 INF: FPGA: Recv ZSGSRD 30745
17-03-18 06:02:11.724 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.724 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:11.724 -07 000000608 INF: FPGA: Recv ZSGSRD 30755
17-03-18 06:02:11.734 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.734 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:11.734 -07 000000591 INF: FPGA: Recv ZPIEZORD 26568
17-03-18 06:02:11.744 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.2 V.
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30751 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30741 (-137.0 uncal um), Max = 30758 (-137.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30751, posNoise = 7, negNoise = 10
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: After move to -0.137867, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:02:11.744 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:11.794 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:02:11.794 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:11.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:11.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:11.794 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:11.794 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:11.794 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:11.794 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:11.794 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:11.794 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:11.804 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:11.804 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:11.814 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:02:11.814 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:02:11.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:11.824 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:11.864 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:12.164 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:12.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:12.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:12.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:02:12.194 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:12.204 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:12.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 06:02:12.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:02:12.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:12.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:12.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:02:12.304 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:12.304 -07 000000625 INF: Autofocus start
17-03-18 06:02:12.304 -07 000000625 INF: MeasureProfile start
17-03-18 06:02:12.304 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:12.314 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:12.314 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:12.314 -07 000000625 INF: MeasureProfile done
17-03-18 06:02:12.324 -07 000000625 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:02:12.324 -07 000000625 INF: Autofocus finished
17-03-18 06:02:12.514 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:12.514 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:12.514 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137874299582426. ----------
17-03-18 06:02:12.514 -07 000000610 INF: Cycle	144	Tile	6	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:12.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28595, sync = True, waitForSettling = True)
17-03-18 06:02:12.524 -07 000000610 INF: Z Motor: Moving to -0.130900 mm, started at -0.137874 mm, distance = 6.97 um
17-03-18 06:02:12.524 -07 000000610 INF: FPGA: Xmit ZDACW 28595\n [Z Motor]
17-03-18 06:02:12.524 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:02:12.534 -07 000000610 INF: FPGA: 'ZDACW 28595' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:12.534 -07 000000501 INF: FPGA: Recv ZDACR 28595
17-03-18 06:02:12.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.694 -07 000000462 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:02:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:12.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:02:12.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.714 -07 000000462 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:02:12.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.724 -07 000000579 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:02:12.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.734 -07 000000462 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:02:12.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.744 -07 000000579 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:02:12.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.754 -07 000000561 INF: FPGA: Recv ZSGSRD 29673
17-03-18 06:02:12.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.764 -07 000000608 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:02:12.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.774 -07 000000591 INF: FPGA: Recv ZSGSRD 29665
17-03-18 06:02:12.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:12.784 -07 000000561 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:02:12.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:12.794 -07 000000579 INF: FPGA: Recv ZPIEZORD 25144
17-03-18 06:02:12.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:12.804 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.9 V.
17-03-18 06:02:12.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29667 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29663 (-130.1 uncal um), Max = 29673 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:02:12.804 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29667, posNoise = 6, negNoise = 4
17-03-18 06:02:12.804 -07 000000610 INF: Z Motor: After move to -0.130900, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:12.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:02:12.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:12.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:12.804 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:12.804 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:12.804 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:12.804 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:12.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:12.804 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:12.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:12.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:12.804 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:12.804 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:12.814 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:12.814 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:12.814 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:12.814 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:12.814 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:12.814 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:12.814 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:12.814 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:02:12.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28772 150\n [Camera]
17-03-18 06:02:13.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:13.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:13.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:13.474 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:13.474 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:13.474 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:02:13.474 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:13.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:13.474 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:13.474 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:13.474 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:02:13.664 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28772 835
17-03-18 06:02:13.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:13.854 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:02:13.854 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:02:13.854 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:13.854 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:02:13.854 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:02:13.854 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:13.854 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:13.854 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:02:13.854 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:13.864 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:02:14.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:14.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:14.034 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:14.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:14.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:14.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:14.184 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:14.184 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:02:14.194 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:14.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:02:14.224 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:02:14.224 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:14.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28772 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:02:14.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:14.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130910453620757. ------
17-03-18 06:02:14.224 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:14.234 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13747 mm
17-03-18 06:02:14.234 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:14.234 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:02:14.234 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:02:14.234 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30030, sync = True, waitForSettling = False)
17-03-18 06:02:14.234 -07 000000606 INF: Z Motor: Moving to -0.137469 mm, started at -0.130910 mm, distance = -6.56 um
17-03-18 06:02:14.234 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:14.244 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:14.244 -07 000000606 INF: FPGA: Xmit ZDACW 30030\n [Z Motor]
17-03-18 06:02:14.244 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:02:14.254 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:14.254 -07 000000606 INF: FPGA: 'ZDACW 30030' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:02:14.254 -07 000000012 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:02:14.264 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:14.264 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:02:14.264 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:14.264 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:14.264 -07 000000462 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:02:14.274 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:14.274 -07 000000608 INF: FPGA: Recv ZDACR 30030
17-03-18 06:02:14.284 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:14.284 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:14.284 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:02:14.464 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:14.464 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:02:14.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.989471,
17-03-18 06:02:14.564 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:02:14.574 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:02:14.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:14.574 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:14.574 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:02:14.574 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:02:14.574 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:14.574 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:14.574 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 545 ms.
17-03-18 06:02:14.584 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:02:14.654 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:02:14.654 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:02:14.714 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:14.714 -07 000000625 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:02:14.724 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:14.724 -07 000000462 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:14.724 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:02:14.724 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.118 mm/sec
17-03-18 06:02:15.674 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:15.674 -07 000000591 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:02:15.684 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.684 -07 000000462 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:15.714 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:15.714 -07 000000462 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:15.714 -07 000000462 INF: Y Motor: Moved to 64.8774 after 1480 ms (table move)
17-03-18 06:02:15.714 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137469 mm (DAC = 30030)
17-03-18 06:02:15.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.714 -07 000000462 INF: FPGA: Recv ZSGSRD 30687
17-03-18 06:02:15.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:02:15.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.724 -07 000000462 INF: FPGA: Recv ZSGSRD 30694
17-03-18 06:02:15.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.734 -07 000000462 INF: FPGA: Recv ZSGSRD 30697
17-03-18 06:02:15.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.744 -07 000000462 INF: FPGA: Recv ZSGSRD 30689
17-03-18 06:02:15.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.754 -07 000000579 INF: FPGA: Recv ZSGSRD 30690
17-03-18 06:02:15.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.764 -07 000000606 INF: FPGA: Recv ZSGSRD 30686
17-03-18 06:02:15.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.774 -07 000000462 INF: FPGA: Recv ZSGSRD 30686
17-03-18 06:02:15.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.784 -07 000000462 INF: FPGA: Recv ZSGSRD 30690
17-03-18 06:02:15.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.794 -07 000000462 INF: FPGA: Recv ZSGSRD 30690
17-03-18 06:02:15.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:15.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30682
17-03-18 06:02:15.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.814 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:15.814 -07 000000591 INF: FPGA: Recv ZPIEZORD 26515
17-03-18 06:02:15.824 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.2 V.
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30689 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30690 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30682 (-136.6 uncal um), Max = 30697 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30689, posNoise = 8, negNoise = 7
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: After move to -0.137469, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:02:15.824 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:15.874 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:02:15.874 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:15.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:15.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:15.874 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:15.874 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:15.874 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:15.874 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:15.884 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:15.884 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:15.884 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:15.884 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:15.884 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:02:15.884 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:02:15.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:15.934 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:16.234 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:16.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:16.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:16.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 06:02:16.274 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:16.274 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:16.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 06:02:16.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:02:16.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:16.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:16.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:02:16.374 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:16.374 -07 000000606 INF: Autofocus start
17-03-18 06:02:16.374 -07 000000606 INF: MeasureProfile start
17-03-18 06:02:16.374 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:16.384 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:16.384 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:16.384 -07 000000606 INF: MeasureProfile done
17-03-18 06:02:16.384 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:02:16.384 -07 000000606 INF: Autofocus finished
17-03-18 06:02:16.584 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:16.584 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:16.584 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137475998429637. ----------
17-03-18 06:02:16.594 -07 000000610 INF: Cycle	144	Tile	7	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:16.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28555, sync = True, waitForSettling = True)
17-03-18 06:02:16.594 -07 000000610 INF: Z Motor: Moving to -0.130716 mm, started at -0.137476 mm, distance = 6.76 um
17-03-18 06:02:16.594 -07 000000610 INF: FPGA: Xmit ZDACW 28555\n [Z Motor]
17-03-18 06:02:16.594 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:02:16.604 -07 000000610 INF: FPGA: 'ZDACW 28555' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:02:16.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:16.604 -07 000000606 INF: FPGA: Recv ZDACR 28555
17-03-18 06:02:16.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:16.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29643
17-03-18 06:02:16.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:16.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.774 -07 000000462 INF: FPGA: Recv ZSGSRD 29638
17-03-18 06:02:16.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29640
17-03-18 06:02:16.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.794 -07 000000606 INF: FPGA: Recv ZSGSRD 29633
17-03-18 06:02:16.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.804 -07 000000591 INF: FPGA: Recv ZSGSRD 29638
17-03-18 06:02:16.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.814 -07 000000606 INF: FPGA: Recv ZSGSRD 29642
17-03-18 06:02:16.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.824 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:16.824 -07 000000561 INF: FPGA: Recv ZSGSRD 29637
17-03-18 06:02:16.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29638
17-03-18 06:02:16.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.844 -07 000000462 INF: FPGA: Recv ZSGSRD 29634
17-03-18 06:02:16.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:16.854 -07 000000606 INF: FPGA: Recv ZSGSRD 29636
17-03-18 06:02:16.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:16.864 -07 000000606 INF: FPGA: Recv ZPIEZORD 25118
17-03-18 06:02:16.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:16.874 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.9 V.
17-03-18 06:02:16.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29638 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29638 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29633 (-129.9 uncal um), Max = 29643 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:16.874 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29638, posNoise = 5, negNoise = 5
17-03-18 06:02:16.874 -07 000000610 INF: Z Motor: After move to -0.130716, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:16.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:02:16.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:16.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:16.874 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:16.874 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:16.874 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:16.874 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:16.874 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:16.874 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:16.874 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:02:16.874 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:16.874 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:16.874 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:16.884 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:16.884 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:16.884 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:16.884 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:16.894 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:02:16.894 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:02:16.894 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:02:16.894 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:02:16.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28731 150\n [Camera]
17-03-18 06:02:17.094 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:17.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:17.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:17.544 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:17.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:17.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:17.544 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:17.554 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:17.554 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:02:17.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:17.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-18 06:02:17.734 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28731 835
17-03-18 06:02:17.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:17.934 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:02:17.934 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:02:17.934 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:17.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:02:17.934 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:17.934 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:02:17.944 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:17.944 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:17.944 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:02:17.944 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:02:18.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:02:18.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:02:18.114 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:18.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:02:18.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:02:18.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:18.224 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:18.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 06:02:18.234 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:18.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:02:18.294 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:02:18.294 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:18.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28731 150' command took 2 ms to send, 1396 ms to get response, and 1401 ms overall
17-03-18 06:02:18.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:18.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130724151468646. ------
17-03-18 06:02:18.304 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:18.304 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13732 mm
17-03-18 06:02:18.304 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:18.304 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:02:18.304 -07 000000444 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:02:18.304 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29998, sync = True, waitForSettling = False)
17-03-18 06:02:18.304 -07 000000606 INF: Z Motor: Moving to -0.137322 mm, started at -0.130724 mm, distance = -6.60 um
17-03-18 06:02:18.304 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:18.314 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:18.314 -07 000000606 INF: FPGA: Xmit ZDACW 29998\n [Z Motor]
17-03-18 06:02:18.314 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:02:18.324 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:18.324 -07 000000606 INF: FPGA: 'ZDACW 29998' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:02:18.324 -07 000000591 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:02:18.334 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:18.334 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:02:18.334 -07 000000444 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:18.334 -07 000000444 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:18.334 -07 000000444 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:02:18.344 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:18.344 -07 000000591 INF: FPGA: Recv ZDACR 29998
17-03-18 06:02:18.354 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:18.354 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:18.354 -07 000000606 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:02:18.534 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:18.534 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:02:18.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:02:18.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:02:18.624 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:18.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:02:18.624 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:02:18.624 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:18.634 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:18.634 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:18.634 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 06:02:18.634 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:02:18.724 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:02:18.724 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:02:18.784 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:18.784 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:02:18.794 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:18.794 -07 000000444 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:18.794 -07 000000444 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:02:18.794 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-18 06:02:19.744 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:20.314 -07 000000462 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:02:20.314 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 560 ms to get response, and 570 ms overall
17-03-18 06:02:20.314 -07 000000444 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:20.314 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.974486,
17-03-18 06:02:20.354 -07 000000444 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:20.354 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:20.354 -07 000000444 INF: Y Motor: Moved to 65.7129 after 2049 ms (table move)
17-03-18 06:02:20.354 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137322 mm (DAC = 29998)
17-03-18 06:02:20.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.364 -07 000000591 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:02:20.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:02:20.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.364 -07 000000444 INF: FPGA: Recv ZSGSRD 30662
17-03-18 06:02:20.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.374 -07 000000590 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:02:20.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.384 -07 000000590 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:02:20.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.394 -07 000000561 INF: FPGA: Recv ZSGSRD 30664
17-03-18 06:02:20.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.404 -07 000000590 INF: FPGA: Recv ZSGSRD 30660
17-03-18 06:02:20.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:02:20.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.424 -07 000000444 INF: FPGA: Recv ZSGSRD 30666
17-03-18 06:02:20.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.434 -07 000000561 INF: FPGA: Recv ZSGSRD 30671
17-03-18 06:02:20.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:20.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30665
17-03-18 06:02:20.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.454 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:20.454 -07 000000444 INF: FPGA: Recv ZPIEZORD 26517
17-03-18 06:02:20.464 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.1 V.
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30666 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30658 (-136.5 uncal um), Max = 30672 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30666, posNoise = 6, negNoise = 8
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: After move to -0.137322, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: Settle wait time = 2052 ms, measure time = 103 ms (allowed 150 ms), total time = 2155 ms
17-03-18 06:02:20.464 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:20.514 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2207 ms
17-03-18 06:02:20.514 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:20.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:20.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:20.514 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:20.514 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:20.514 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:20.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:20.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:02:20.514 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:20.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:20.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:20.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:02:20.524 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:02:20.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:20.574 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:20.874 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:20.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:20.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:20.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 06:02:20.914 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:20.914 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:20.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:02:20.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:02:20.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:20.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:20.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:21.014 -07 000000501 INF: Autofocus start
17-03-18 06:02:21.014 -07 000000501 INF: MeasureProfile start
17-03-18 06:02:21.014 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:21.014 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:21.024 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:21.024 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:21.024 -07 000000501 INF: MeasureProfile done
17-03-18 06:02:21.024 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:02:21.024 -07 000000501 INF: Autofocus finished
17-03-18 06:02:21.224 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:21.224 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:21.224 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137328241550377. ----------
17-03-18 06:02:21.224 -07 000000610 INF: Cycle	144	Tile	8	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:21.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-18 06:02:21.234 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.137328 mm, distance = 6.76 um
17-03-18 06:02:21.234 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-18 06:02:21.234 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:02:21.244 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:21.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:21.244 -07 000000480 INF: FPGA: Recv ZDACR 28522
17-03-18 06:02:21.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:21.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29619
17-03-18 06:02:21.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:21.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.414 -07 000000591 INF: FPGA: Recv ZSGSRD 29614
17-03-18 06:02:21.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.424 -07 000000501 INF: FPGA: Recv ZSGSRD 29617
17-03-18 06:02:21.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.434 -07 000000590 INF: FPGA: Recv ZSGSRD 29612
17-03-18 06:02:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.444 -07 000000444 INF: FPGA: Recv ZSGSRD 29616
17-03-18 06:02:21.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.454 -07 000000480 INF: FPGA: Recv ZSGSRD 29616
17-03-18 06:02:21.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.464 -07 000000512 INF: FPGA: Recv ZSGSRD 29615
17-03-18 06:02:21.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.474 -07 000000590 INF: FPGA: Recv ZSGSRD 29615
17-03-18 06:02:21.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29614
17-03-18 06:02:21.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:21.494 -07 000000590 INF: FPGA: Recv ZSGSRD 29618
17-03-18 06:02:21.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:21.504 -07 000000512 INF: FPGA: Recv ZPIEZORD 25123
17-03-18 06:02:21.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:21.514 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.9 V.
17-03-18 06:02:21.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29612 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:02:21.514 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 3, negNoise = 4
17-03-18 06:02:21.514 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:21.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:02:21.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:21.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:21.514 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:21.514 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:21.514 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:21.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:21.514 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:21.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:21.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:21.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:21.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:02:21.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:21.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:21.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:21.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:21.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:21.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:21.524 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:21.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:21.534 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:02:21.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28699 150\n [Camera]
17-03-18 06:02:21.734 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:21.824 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:22.184 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:22.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:22.184 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:22.184 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:22.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:22.184 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:22.194 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:22.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:02:22.194 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:22.194 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:02:22.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28699 835
17-03-18 06:02:22.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:22.584 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:02:22.584 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:02:22.584 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:22.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:02:22.594 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:02:22.594 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:22.594 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:22.594 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:02:22.594 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:22.604 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:02:22.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:22.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:22.744 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:22.744 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:22.744 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) start.
17-03-18 06:02:22.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:22.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:22.744 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:22.744 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:22.744 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2367226128, 0x0, 418435064) start.
17-03-18 06:02:22.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:22.934 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:22.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28699 150' command took 2 ms to send, 1393 ms to get response, and 1401 ms overall
17-03-18 06:02:22.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:22.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130582818801528. ------
17-03-18 06:02:22.934 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:22.934 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13698 mm
17-03-18 06:02:22.934 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:23.064 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:23.064 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 121 ms to get response, and 123 ms overall
17-03-18 06:02:23.064 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:02:23.064 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:23.064 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:02:23.064 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29924, sync = True, waitForSettling = False)
17-03-18 06:02:23.064 -07 000000625 INF: Z Motor: Moving to -0.136983 mm, started at -0.130583 mm, distance = -6.40 um
17-03-18 06:02:23.074 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:23.074 -07 000000608 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:02:23.084 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:02:23.084 -07 000000480 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:23.084 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:23.084 -07 000000480 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:02:23.084 -07 000000625 INF: FPGA: Xmit ZDACW 29924\n [Z Motor]
17-03-18 06:02:23.084 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:02:23.094 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:23.094 -07 000000625 INF: FPGA: 'ZDACW 29924' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:02:23.104 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:23.104 -07 000000501 INF: FPGA: Recv ZDACR 29924
17-03-18 06:02:23.114 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:23.114 -07 000000625 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:02:23.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:02:23.134 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:02:23.134 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:23.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2367226128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:02:23.144 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:02:23.144 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:23.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:23.144 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:23.144 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:02:23.154 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:02:23.264 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:23.264 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:02:23.464 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 06:02:23.464 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:02:23.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:23.524 -07 000000591 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:02:23.534 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:23.534 -07 000000480 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:23.534 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:02:23.534 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 06:02:24.484 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:24.484 -07 000000581 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:02:24.494 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:24.494 -07 000000480 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:24.524 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:24.524 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:24.524 -07 000000480 INF: Y Motor: Moved to 66.5376 after 1464 ms (table move)
17-03-18 06:02:24.534 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136983 mm (DAC = 29924)
17-03-18 06:02:24.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.534 -07 000000444 INF: FPGA: Recv ZSGSRD 30615
17-03-18 06:02:24.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.544 -07 000000590 INF: FPGA: Recv ZSGSRD 30612
17-03-18 06:02:24.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30615
17-03-18 06:02:24.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.564 -07 000000608 INF: FPGA: Recv ZSGSRD 30612
17-03-18 06:02:24.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.574 -07 000000608 INF: FPGA: Recv ZSGSRD 30606
17-03-18 06:02:24.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.584 -07 000000608 INF: FPGA: Recv ZSGSRD 30611
17-03-18 06:02:24.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.594 -07 000000608 INF: FPGA: Recv ZSGSRD 30624
17-03-18 06:02:24.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.604 -07 000000618 INF: FPGA: Recv ZSGSRD 30617
17-03-18 06:02:24.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.614 -07 000000618 INF: FPGA: Recv ZSGSRD 30613
17-03-18 06:02:24.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:24.624 -07 000000608 INF: FPGA: Recv ZSGSRD 30618
17-03-18 06:02:24.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.634 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:24.634 -07 000000608 INF: FPGA: Recv ZPIEZORD 26454
17-03-18 06:02:24.644 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.1 V.
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30614 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30614 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30606 (-136.1 uncal um), Max = 30624 (-136.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30614, posNoise = 10, negNoise = 8
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: After move to -0.136983, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: Settle wait time = 1466 ms, measure time = 111 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:02:24.644 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:24.684 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 06:02:24.684 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:24.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:24.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:24.684 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:24.684 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:24.684 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:24.694 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:24.694 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:24.694 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:24.694 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:24.694 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:24.704 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:02:24.704 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:02:24.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:24.754 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:25.054 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:25.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:25.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:25.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:02:25.094 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:25.094 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:25.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 06:02:25.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:02:25.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:25.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:25.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:02:25.194 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:25.194 -07 000000608 INF: Autofocus start
17-03-18 06:02:25.194 -07 000000608 INF: MeasureProfile start
17-03-18 06:02:25.194 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:25.204 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:25.204 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:25.204 -07 000000608 INF: MeasureProfile done
17-03-18 06:02:25.204 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:02:25.204 -07 000000608 INF: Autofocus finished
17-03-18 06:02:25.404 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:25.404 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:25.404 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.136994182519005. ----------
17-03-18 06:02:25.414 -07 000000610 INF: Cycle	144	Tile	9	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:25.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28431, sync = True, waitForSettling = True)
17-03-18 06:02:25.414 -07 000000610 INF: Z Motor: Moving to -0.130149 mm, started at -0.136994 mm, distance = 6.85 um
17-03-18 06:02:25.414 -07 000000610 INF: FPGA: Xmit ZDACW 28431\n [Z Motor]
17-03-18 06:02:25.414 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:02:25.424 -07 000000610 INF: FPGA: 'ZDACW 28431' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:02:25.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:25.424 -07 000000618 INF: FPGA: Recv ZDACR 28431
17-03-18 06:02:25.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:25.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29549
17-03-18 06:02:25.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:25.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29548
17-03-18 06:02:25.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29540
17-03-18 06:02:25.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.614 -07 000000618 INF: FPGA: Recv ZSGSRD 29550
17-03-18 06:02:25.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.624 -07 000000579 INF: FPGA: Recv ZSGSRD 29550
17-03-18 06:02:25.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.634 -07 000000561 INF: FPGA: Recv ZSGSRD 29551
17-03-18 06:02:25.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.644 -07 000000012 INF: FPGA: Recv ZSGSRD 29552
17-03-18 06:02:25.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.654 -07 000000561 INF: FPGA: Recv ZSGSRD 29547
17-03-18 06:02:25.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:25.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.674 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.96762,
17-03-18 06:02:25.674 -07 000000579 INF: FPGA: Recv ZSGSRD 29548
17-03-18 06:02:25.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:25.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:25.704 -07 000000012 INF: FPGA: Recv ZSGSRD 29551
17-03-18 06:02:25.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:25.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:25.734 -07 000000618 INF: FPGA: Recv ZPIEZORD 25054
17-03-18 06:02:25.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:25.744 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.9 V.
17-03-18 06:02:25.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29549 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29540 (-129.3 uncal um), Max = 29552 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:02:25.744 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29549, posNoise = 3, negNoise = 9
17-03-18 06:02:25.744 -07 000000610 INF: Z Motor: After move to -0.130149, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:25.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 06:02:25.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:25.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:25.744 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:25.744 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:25.744 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:25.744 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:25.744 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:25.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:25.744 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:25.744 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:25.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:02:25.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:25.744 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:25.744 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:25.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:25.744 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:25.754 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:25.754 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:02:25.754 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:25.754 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:25.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28608 150\n [Camera]
17-03-18 06:02:25.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:26.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 645
17-03-18 06:02:26.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 645
17-03-18 06:02:26.414 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:26.414 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 645
17-03-18 06:02:26.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 645
17-03-18 06:02:26.424 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:26.424 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:26.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:02:26.424 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:26.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:02:26.604 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28608 835
17-03-18 06:02:26.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:26.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:02:26.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:02:26.794 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:26.804 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:26.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:02:26.804 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:02:26.804 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:26.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:26.804 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:02:26.804 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:02:26.824 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:26.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:26.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:26.974 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:26.974 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:26.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:02:26.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:26.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:26.974 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:26.974 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:26.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:02:27.164 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:02:27.164 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:27.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28608 150' command took 2 ms to send, 1394 ms to get response, and 1400 ms overall
17-03-18 06:02:27.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:27.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.13015239658803. ------
17-03-18 06:02:27.174 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:27.174 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13689 mm
17-03-18 06:02:27.174 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:27.174 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:27.174 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:02:27.174 -07 000000579 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:02:27.174 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29904, sync = True, waitForSettling = False)
17-03-18 06:02:27.174 -07 000000618 INF: Z Motor: Moving to -0.136892 mm, started at -0.130152 mm, distance = -6.74 um
17-03-18 06:02:27.184 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:27.184 -07 000000618 INF: FPGA: Xmit ZDACW 29904\n [Z Motor]
17-03-18 06:02:27.184 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:02:27.194 -07 000000618 INF: FPGA: 'ZDACW 29904' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:02:27.194 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:27.204 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:27.214 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:27.374 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:02:27.374 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:02:27.374 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:27.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:02:27.384 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:02:27.384 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:27.384 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:27.384 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:27.384 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:02:27.394 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:02:28.184 -07 000000625 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:02:28.184 -07 000000625 INF: FPGA: Recv ZDACR 29904
17-03-18 06:02:28.184 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:28.184 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 960 ms to get response, and 990 ms overall
17-03-18 06:02:28.184 -07 000000618 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-18 06:02:28.184 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 970 ms to get response, and 1000 ms overall
17-03-18 06:02:28.184 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 1006 ms overall
17-03-18 06:02:28.184 -07 000000579 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:28.184 -07 000000579 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:28.184 -07 000000579 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:02:28.184 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:28.564 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 06:02:28.564 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-18 06:02:28.614 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:28.614 -07 000000618 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:02:28.624 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:28.624 -07 000000579 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:28.624 -07 000000579 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:02:28.624 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.235 mm/sec
17-03-18 06:02:29.574 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:29.574 -07 000000618 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:02:29.584 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:29.584 -07 000000579 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:29.614 -07 000000579 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:29.614 -07 000000579 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:29.614 -07 000000579 INF: Y Motor: Moved to 67.3706 after 2438 ms (table move)
17-03-18 06:02:29.614 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136892 mm (DAC = 29904)
17-03-18 06:02:29.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.624 -07 000000579 INF: FPGA: Recv ZSGSRD 30605
17-03-18 06:02:29.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:02:29.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.624 -07 000000579 INF: FPGA: Recv ZSGSRD 30602
17-03-18 06:02:29.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:29.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.634 -07 000000608 INF: FPGA: Recv ZSGSRD 30591
17-03-18 06:02:29.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.644 -07 000000579 INF: FPGA: Recv ZSGSRD 30598
17-03-18 06:02:29.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.654 -07 000000618 INF: FPGA: Recv ZSGSRD 30593
17-03-18 06:02:29.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.664 -07 000000625 INF: FPGA: Recv ZSGSRD 30608
17-03-18 06:02:29.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.674 -07 000000579 INF: FPGA: Recv ZSGSRD 30603
17-03-18 06:02:29.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.684 -07 000000618 INF: FPGA: Recv ZSGSRD 30600
17-03-18 06:02:29.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.694 -07 000000625 INF: FPGA: Recv ZSGSRD 30599
17-03-18 06:02:29.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:29.704 -07 000000579 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:02:29.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.714 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:29.714 -07 000000625 INF: FPGA: Recv ZPIEZORD 26436
17-03-18 06:02:29.724 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30600 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30600 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30591 (-136.1 uncal um), Max = 30608 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30600, posNoise = 8, negNoise = 9
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: After move to -0.136892, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: Settle wait time = 2443 ms, measure time = 103 ms (allowed 150 ms), total time = 2546 ms
17-03-18 06:02:29.724 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:29.774 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2599 ms
17-03-18 06:02:29.774 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:29.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:29.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:29.774 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:29.774 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:29.774 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:29.774 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:29.774 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:02:29.774 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:29.784 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:29.784 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:29.784 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:02:29.784 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:02:29.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:29.834 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:30.134 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:30.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:30.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:30.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 06:02:30.174 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:30.174 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:30.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:02:30.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 06:02:30.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:30.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:30.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:02:30.274 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:30.274 -07 000000561 INF: Autofocus start
17-03-18 06:02:30.274 -07 000000561 INF: MeasureProfile start
17-03-18 06:02:30.274 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:30.284 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:30.284 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:30.284 -07 000000561 INF: MeasureProfile done
17-03-18 06:02:30.284 -07 000000561 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:02:30.284 -07 000000561 INF: Autofocus finished
17-03-18 06:02:30.484 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:30.484 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:30.484 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.13690424354902. ----------
17-03-18 06:02:30.484 -07 000000610 INF: Cycle	144	Tile	10	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:30.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28445, sync = True, waitForSettling = True)
17-03-18 06:02:30.494 -07 000000610 INF: Z Motor: Moving to -0.130213 mm, started at -0.136904 mm, distance = 6.69 um
17-03-18 06:02:30.494 -07 000000610 INF: FPGA: Xmit ZDACW 28445\n [Z Motor]
17-03-18 06:02:30.494 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:02:30.504 -07 000000610 INF: FPGA: 'ZDACW 28445' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:30.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:30.504 -07 000000608 INF: FPGA: Recv ZDACR 28445
17-03-18 06:02:30.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:30.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.664 -07 000000618 INF: FPGA: Recv ZSGSRD 29560
17-03-18 06:02:30.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:30.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.674 -07 000000590 INF: FPGA: Recv ZSGSRD 29568
17-03-18 06:02:30.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.684 -07 000000608 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:02:30.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.694 -07 000000590 INF: FPGA: Recv ZSGSRD 29558
17-03-18 06:02:30.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.704 -07 000000625 INF: FPGA: Recv ZSGSRD 29560
17-03-18 06:02:30.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.714 -07 000000462 INF: FPGA: Recv ZSGSRD 29556
17-03-18 06:02:30.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.724 -07 000000512 INF: FPGA: Recv ZSGSRD 29562
17-03-18 06:02:30.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.744 -07 000000579 INF: FPGA: Recv ZSGSRD 29561
17-03-18 06:02:30.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:30.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.754 -07 000000618 INF: FPGA: Recv ZSGSRD 29554
17-03-18 06:02:30.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:30.764 -07 000000625 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:02:30.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:30.774 -07 000000579 INF: FPGA: Recv ZPIEZORD 25070
17-03-18 06:02:30.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:30.784 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.8 V.
17-03-18 06:02:30.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29559 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:30.784 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 9, negNoise = 5
17-03-18 06:02:30.784 -07 000000610 INF: Z Motor: After move to -0.130213, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:30.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 06:02:30.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:30.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:30.784 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:30.784 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:30.784 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:30.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:30.784 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:30.784 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:30.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:30.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:30.784 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:30.784 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:30.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:30.794 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:30.794 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:30.794 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:30.814 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 06:02:30.814 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:02:30.814 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 06:02:30.814 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:02:30.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28621 150\n [Camera]
17-03-18 06:02:31.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 06:02:31.054 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.989471,
17-03-18 06:02:31.464 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:31.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:31.464 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:31.464 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:31.464 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:02:31.464 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:31.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:31.464 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:31.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:31.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:02:31.654 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 835
17-03-18 06:02:31.804 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:31.824 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:31.854 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:02:31.854 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:02:31.854 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:31.864 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:31.864 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:02:31.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:02:31.864 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:02:31.864 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:31.864 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:31.874 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:02:32.024 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:32.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:32.024 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:32.024 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:32.024 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:02:32.024 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:32.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:32.024 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:32.024 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:32.024 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:02:32.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:02:32.214 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:32.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28621 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:02:32.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:32.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.130216638709447. ------
17-03-18 06:02:32.224 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:32.224 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13663 mm
17-03-18 06:02:32.224 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:32.354 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:02:32.354 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:02:32.354 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:32.434 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 06:02:32.434 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:02:32.434 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:32.434 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 408 ms.
17-03-18 06:02:32.434 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:02:32.434 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:32.434 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:32.444 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:32.444 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 06:02:32.444 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:02:32.454 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29847, sync = True, waitForSettling = False)
17-03-18 06:02:32.454 -07 000000590 INF: Z Motor: Moving to -0.136631 mm, started at -0.130217 mm, distance = -6.41 um
17-03-18 06:02:32.454 -07 000000590 INF: FPGA: Xmit ZDACW 29847\n [Z Motor]
17-03-18 06:02:32.454 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:32.454 -07 000000591 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:02:32.454 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:02:32.454 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 97 ms to get response, and 100 ms overall
17-03-18 06:02:32.454 -07 000000462 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:32.454 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:32.454 -07 000000462 INF: Y Motor: Moving 1347 steps-25
17-03-18 06:02:32.454 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 103 ms to get response, and 232 ms overall
17-03-18 06:02:32.464 -07 000000590 INF: FPGA: 'ZDACW 29847' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:32.464 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:32.474 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:32.484 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:32.484 -07 000000591 INF: FPGA: Recv ZDACR 29847
17-03-18 06:02:32.494 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:32.494 -07 000000590 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:02:32.674 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:32.674 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 214 ms overall
17-03-18 06:02:32.834 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:02:32.834 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:02:32.884 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:32.894 -07 000000591 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:02:32.894 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:02:32.894 -07 000000462 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:32.894 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:02:32.894 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.842 mm, average velocity = 2.216 mm/sec
17-03-18 06:02:33.844 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:33.844 -07 000000512 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:02:33.854 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.854 -07 000000462 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:33.884 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:33.884 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:33.884 -07 000000462 INF: Y Motor: Moved to 68.2036 after 1529 ms (table move)
17-03-18 06:02:33.884 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136631 mm (DAC = 29847)
17-03-18 06:02:33.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30556
17-03-18 06:02:33.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:33.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.914 -07 000000591 INF: FPGA: Recv ZSGSRD 30556
17-03-18 06:02:33.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.924 -07 000000590 INF: FPGA: Recv ZSGSRD 30554
17-03-18 06:02:33.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.934 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.934 -07 000000590 INF: FPGA: Recv ZSGSRD 30556
17-03-18 06:02:33.944 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.944 -07 000000591 INF: FPGA: Recv ZSGSRD 30559
17-03-18 06:02:33.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.954 -07 000000462 INF: FPGA: Recv ZSGSRD 30564
17-03-18 06:02:33.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.964 -07 000000512 INF: FPGA: Recv ZSGSRD 30558
17-03-18 06:02:33.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.974 -07 000000591 INF: FPGA: Recv ZSGSRD 30554
17-03-18 06:02:33.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.984 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.984 -07 000000462 INF: FPGA: Recv ZSGSRD 30562
17-03-18 06:02:33.994 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:33.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:33.994 -07 000000512 INF: FPGA: Recv ZSGSRD 30557
17-03-18 06:02:34.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.004 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:34.004 -07 000000462 INF: FPGA: Recv ZPIEZORD 26370
17-03-18 06:02:34.014 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.2 V.
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30558 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30556 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30554 (-135.8 uncal um), Max = 30564 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30558, posNoise = 6, negNoise = 4
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: After move to -0.136631, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: Settle wait time = 1436 ms, measure time = 122 ms (allowed 150 ms), total time = 1558 ms
17-03-18 06:02:34.014 -07 000000618 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:34.044 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-18 06:02:34.044 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:34.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:34.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:34.044 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:34.044 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:34.044 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:34.044 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:34.044 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:34.044 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:34.054 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:34.054 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:34.064 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:02:34.064 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:02:34.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:34.114 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 06:02:34.414 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 06:02:34.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 06:02:34.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:34.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:02:34.444 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:34.454 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:34.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 06:02:34.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:02:34.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:34.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:34.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:34.554 -07 000000444 INF: Autofocus start
17-03-18 06:02:34.554 -07 000000444 INF: MeasureProfile start
17-03-18 06:02:34.554 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:34.554 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:34.564 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:02:34.564 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:34.564 -07 000000444 INF: MeasureProfile done
17-03-18 06:02:34.564 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:02:34.564 -07 000000444 INF: Autofocus finished
17-03-18 06:02:34.764 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:34.764 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:34.764 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.136634426639066. ----------
17-03-18 06:02:34.764 -07 000000610 INF: Cycle	144	Tile	11	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:34.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28354, sync = True, waitForSettling = True)
17-03-18 06:02:34.774 -07 000000610 INF: Z Motor: Moving to -0.129796 mm, started at -0.136634 mm, distance = 6.84 um
17-03-18 06:02:34.774 -07 000000610 INF: FPGA: Xmit ZDACW 28354\n [Z Motor]
17-03-18 06:02:34.774 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:02:34.784 -07 000000610 INF: FPGA: 'ZDACW 28354' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:34.784 -07 000000590 INF: FPGA: Recv ZDACR 28354
17-03-18 06:02:34.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.944 -07 000000462 INF: FPGA: Recv ZSGSRD 29494
17-03-18 06:02:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.954 -07 000000618 INF: FPGA: Recv ZSGSRD 29490
17-03-18 06:02:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29497
17-03-18 06:02:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.974 -07 000000581 INF: FPGA: Recv ZSGSRD 29498
17-03-18 06:02:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.984 -07 000000462 INF: FPGA: Recv ZSGSRD 29494
17-03-18 06:02:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:34.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:34.994 -07 000000581 INF: FPGA: Recv ZSGSRD 29496
17-03-18 06:02:35.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:35.004 -07 000000462 INF: FPGA: Recv ZSGSRD 29491
17-03-18 06:02:35.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:35.014 -07 000000591 INF: FPGA: Recv ZSGSRD 29492
17-03-18 06:02:35.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:35.024 -07 000000581 INF: FPGA: Recv ZSGSRD 29493
17-03-18 06:02:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:35.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29495
17-03-18 06:02:35.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:35.044 -07 000000444 INF: FPGA: Recv ZPIEZORD 24967
17-03-18 06:02:35.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:35.054 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.9 V.
17-03-18 06:02:35.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29494 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29494 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29498 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:02:35.054 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29494, posNoise = 4, negNoise = 4
17-03-18 06:02:35.054 -07 000000610 INF: Z Motor: After move to -0.129796, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:35.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:02:35.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:35.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:35.054 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:35.054 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:35.054 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:35.054 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:35.054 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:35.054 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:35.054 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:35.054 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:35.054 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:35.054 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:35.054 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:35.054 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:35.054 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:35.064 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:35.074 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:02:35.074 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:02:35.074 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:02:35.074 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:02:35.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28531 150\n [Camera]
17-03-18 06:02:35.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:35.724 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:35.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:35.734 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:35.734 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:35.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:35.734 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:35.734 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:35.734 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:02:35.744 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:35.744 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:02:35.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28531 835
17-03-18 06:02:36.074 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:36.134 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:02:36.134 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:02:36.134 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:36.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:02:36.134 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:02:36.134 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:36.144 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:02:36.144 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:02:36.144 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:02:36.154 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:02:36.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:36.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:36.284 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:36.284 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:36.284 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:02:36.294 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:36.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:36.294 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:36.294 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:36.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:02:36.414 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.994908,
17-03-18 06:02:36.474 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:36.484 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:36.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28531 150' command took 2 ms to send, 1390 ms to get response, and 1400 ms overall
17-03-18 06:02:36.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:36.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129799064920233. ------
17-03-18 06:02:36.604 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13641 mm
17-03-18 06:02:36.604 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:36.604 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:36.604 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:02:36.604 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:02:36.614 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:36.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:02:36.674 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:02:36.674 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:36.684 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:36.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:02:36.684 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:02:36.684 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:36.684 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:02:36.694 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:02:36.694 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:02:36.704 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29799, sync = True, waitForSettling = False)
17-03-18 06:02:36.704 -07 000000462 INF: Z Motor: Moving to -0.136411 mm, started at -0.129799 mm, distance = -6.61 um
17-03-18 06:02:36.704 -07 000000462 INF: FPGA: Xmit ZDACW 29799\n [Z Motor]
17-03-18 06:02:36.704 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:36.704 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:02:36.704 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 91 ms to get response, and 94 ms overall
17-03-18 06:02:36.704 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 81 ms to get response, and 92 ms overall
17-03-18 06:02:36.704 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:02:36.704 -07 000000618 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:36.704 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:36.704 -07 000000618 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:02:36.714 -07 000000462 INF: FPGA: 'ZDACW 29799' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:36.714 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:36.714 -07 000000512 INF: FPGA: Recv ZDACR 29799
17-03-18 06:02:36.724 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:36.724 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:36.724 -07 000000462 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 06:02:36.734 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:36.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:36.924 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:36.924 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 06:02:37.104 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:02:37.104 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-18 06:02:37.154 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:37.164 -07 000000462 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:02:37.164 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:02:37.164 -07 000000618 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:37.164 -07 000000618 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:02:37.164 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.839 mm, average velocity = 2.097 mm/sec
17-03-18 06:02:38.114 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:38.114 -07 000000512 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:02:38.124 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.124 -07 000000618 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:38.154 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:38.154 -07 000000618 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:38.154 -07 000000618 INF: Y Motor: Moved to 69.0259 after 1546 ms (table move)
17-03-18 06:02:38.164 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136411 mm (DAC = 29799)
17-03-18 06:02:38.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30524
17-03-18 06:02:38.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.174 -07 000000618 INF: FPGA: Recv ZSGSRD 30520
17-03-18 06:02:38.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.184 -07 000000512 INF: FPGA: Recv ZSGSRD 30516
17-03-18 06:02:38.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.194 -07 000000512 INF: FPGA: Recv ZSGSRD 30517
17-03-18 06:02:38.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.204 -07 000000462 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:02:38.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.214 -07 000000581 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:02:38.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.224 -07 000000581 INF: FPGA: Recv ZSGSRD 30528
17-03-18 06:02:38.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.234 -07 000000512 INF: FPGA: Recv ZSGSRD 30522
17-03-18 06:02:38.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.244 -07 000000618 INF: FPGA: Recv ZSGSRD 30525
17-03-18 06:02:38.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:38.254 -07 000000581 INF: FPGA: Recv ZSGSRD 30525
17-03-18 06:02:38.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.264 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:38.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 26369
17-03-18 06:02:38.274 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.1 V.
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30523 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30528 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30523, posNoise = 5, negNoise = 7
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: After move to -0.136411, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: Settle wait time = 1458 ms, measure time = 111 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:02:38.274 -07 000000590 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:38.314 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-18 06:02:38.314 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:38.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:38.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:38.314 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:38.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:38.314 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:38.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:38.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:38.324 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:38.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:38.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:38.334 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:02:38.334 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:02:38.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:38.374 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:38.674 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:38.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:38.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:38.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:02:38.714 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:38.714 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:38.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:02:38.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:02:38.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:38.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:38.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:38.814 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:38.814 -07 000000501 INF: Autofocus start
17-03-18 06:02:38.814 -07 000000501 INF: MeasureProfile start
17-03-18 06:02:38.814 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:38.824 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:38.824 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:38.824 -07 000000501 INF: MeasureProfile done
17-03-18 06:02:38.824 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:02:38.824 -07 000000501 INF: Autofocus finished
17-03-18 06:02:39.024 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:39.024 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:39.024 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136409579214105. ----------
17-03-18 06:02:39.034 -07 000000610 INF: Cycle	144	Tile	12	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:39.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28323, sync = True, waitForSettling = True)
17-03-18 06:02:39.034 -07 000000610 INF: Z Motor: Moving to -0.129654 mm, started at -0.136410 mm, distance = 6.76 um
17-03-18 06:02:39.034 -07 000000610 INF: FPGA: Xmit ZDACW 28323\n [Z Motor]
17-03-18 06:02:39.034 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:02:39.044 -07 000000610 INF: FPGA: 'ZDACW 28323' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:39.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:39.044 -07 000000606 INF: FPGA: Recv ZDACR 28323
17-03-18 06:02:39.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29474
17-03-18 06:02:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.234 -07 000000462 INF: FPGA: Recv ZSGSRD 29465
17-03-18 06:02:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:02:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.254 -07 000000462 INF: FPGA: Recv ZSGSRD 29473
17-03-18 06:02:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.274 -07 000000608 INF: FPGA: Recv ZSGSRD 29470
17-03-18 06:02:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.294 -07 000000618 INF: FPGA: Recv ZSGSRD 29471
17-03-18 06:02:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:02:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.304 -07 000000480 INF: FPGA: Recv ZSGSRD 29468
17-03-18 06:02:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.314 -07 000000608 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:02:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29475
17-03-18 06:02:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.334 -07 000000512 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:02:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:39.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29476
17-03-18 06:02:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:39.354 -07 000000480 INF: FPGA: Recv ZPIEZORD 24928
17-03-18 06:02:39.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:39.364 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.0 V.
17-03-18 06:02:39.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29474 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29465 (-128.8 uncal um), Max = 29477 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:02:39.364 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 4, negNoise = 8
17-03-18 06:02:39.364 -07 000000610 INF: Z Motor: After move to -0.129654, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:39.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 06:02:39.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:39.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:39.364 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:39.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:39.364 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:39.364 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:39.364 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:39.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:39.364 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:39.364 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:39.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:39.364 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:39.374 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:39.374 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:39.374 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:39.374 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:39.384 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:02:39.384 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:02:39.384 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:02:39.384 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:02:39.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28500 150\n [Camera]
17-03-18 06:02:39.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:40.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:40.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:40.034 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:40.044 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:40.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:40.044 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:40.044 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:40.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:02:40.044 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:40.044 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:02:40.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28500 835
17-03-18 06:02:40.374 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:40.434 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:02:40.434 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:02:40.434 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:40.444 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:02:40.444 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:02:40.444 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:40.444 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:40.444 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:40.444 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:02:40.444 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:02:40.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:40.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:40.594 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:40.594 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:40.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:02:40.594 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:40.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:40.594 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:40.594 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:40.594 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:02:40.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:40.784 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:40.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28500 150' command took 2 ms to send, 1398 ms to get response, and 1401 ms overall
17-03-18 06:02:40.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:40.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129664156465256. ------
17-03-18 06:02:40.794 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:40.794 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13608 mm
17-03-18 06:02:40.794 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:40.794 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:02:40.794 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:02:40.804 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:40.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:02:40.994 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:02:40.994 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:41.004 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:02:41.004 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:02:41.004 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:41.004 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:41.004 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:41.004 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:02:41.014 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:02:41.014 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29726, sync = True, waitForSettling = False)
17-03-18 06:02:41.014 -07 000000618 INF: Z Motor: Moving to -0.136077 mm, started at -0.129664 mm, distance = -6.41 um
17-03-18 06:02:41.014 -07 000000618 INF: FPGA: Xmit ZDACW 29726\n [Z Motor]
17-03-18 06:02:41.024 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:41.024 -07 000000462 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:02:41.024 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:02:41.024 -07 000000618 INF: FPGA: 'ZDACW 29726' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:02:41.024 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:41.024 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 229 ms overall
17-03-18 06:02:41.024 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 224 ms overall
17-03-18 06:02:41.024 -07 000000608 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:41.024 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:41.024 -07 000000608 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:02:41.024 -07 000000462 INF: FPGA: Recv ZDACR 29726
17-03-18 06:02:41.034 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:41.034 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:41.034 -07 000000618 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-18 06:02:41.044 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:41.234 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:41.234 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 06:02:41.414 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:02:41.414 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:02:41.474 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:41.474 -07 000000462 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:02:41.484 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:41.484 -07 000000608 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:41.484 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:02:41.484 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.149 mm/sec
17-03-18 06:02:41.774 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.014009,
17-03-18 06:02:41.824 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:41.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:42.434 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:42.434 -07 000000618 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:02:42.444 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:42.444 -07 000000608 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:42.484 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:42.484 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:42.484 -07 000000608 INF: Y Motor: Moved to 69.8623 after 1688 ms (table move)
17-03-18 06:02:42.494 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136077 mm (DAC = 29726)
17-03-18 06:02:42.494 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.494 -07 000000561 INF: FPGA: Recv ZSGSRD 30470
17-03-18 06:02:42.504 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.504 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.504 -07 000000618 INF: FPGA: Recv ZSGSRD 30464
17-03-18 06:02:42.514 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.514 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.514 -07 000000579 INF: FPGA: Recv ZSGSRD 30471
17-03-18 06:02:42.524 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.524 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30471
17-03-18 06:02:42.534 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.534 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.534 -07 000000462 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:02:42.544 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.544 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.544 -07 000000501 INF: FPGA: Recv ZSGSRD 30476
17-03-18 06:02:42.554 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.554 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.554 -07 000000608 INF: FPGA: Recv ZSGSRD 30469
17-03-18 06:02:42.564 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.564 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.564 -07 000000462 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:02:42.574 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.574 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.574 -07 000000501 INF: FPGA: Recv ZSGSRD 30466
17-03-18 06:02:42.584 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.584 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:42.584 -07 000000462 INF: FPGA: Recv ZSGSRD 30463
17-03-18 06:02:42.594 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.594 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:42.594 -07 000000579 INF: FPGA: Recv ZPIEZORD 26289
17-03-18 06:02:42.604 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -9.2 V.
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30470 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30463 (-135.2 uncal um), Max = 30476 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30470, posNoise = 6, negNoise = 7
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: After move to -0.136077, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: Settle wait time = 1471 ms, measure time = 110 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:02:42.604 -07 000000581 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:42.644 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1845 ms
17-03-18 06:02:42.644 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:42.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:42.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:42.644 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:42.644 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:42.644 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:42.644 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:42.644 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:42.644 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:42.644 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:42.654 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:42.654 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:02:42.654 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:02:42.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:42.704 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:43.004 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:43.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:43.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:43.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-18 06:02:43.044 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:43.044 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:43.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:02:43.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:02:43.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:43.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:43.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:02:43.144 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:43.144 -07 000000581 INF: Autofocus start
17-03-18 06:02:43.144 -07 000000581 INF: MeasureProfile start
17-03-18 06:02:43.144 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:43.154 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:43.154 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:43.154 -07 000000581 INF: MeasureProfile done
17-03-18 06:02:43.154 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:02:43.154 -07 000000581 INF: Autofocus finished
17-03-18 06:02:43.354 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:43.354 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:43.354 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.136069095970591. ----------
17-03-18 06:02:43.354 -07 000000610 INF: Cycle	144	Tile	13	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:43.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28233, sync = True, waitForSettling = True)
17-03-18 06:02:43.364 -07 000000610 INF: Z Motor: Moving to -0.129242 mm, started at -0.136069 mm, distance = 6.83 um
17-03-18 06:02:43.364 -07 000000610 INF: FPGA: Xmit ZDACW 28233\n [Z Motor]
17-03-18 06:02:43.364 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:02:43.374 -07 000000610 INF: FPGA: 'ZDACW 28233' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:43.374 -07 000000462 INF: FPGA: Recv ZDACR 28233
17-03-18 06:02:43.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:43.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.534 -07 000000618 INF: FPGA: Recv ZSGSRD 29404
17-03-18 06:02:43.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:43.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.544 -07 000000561 INF: FPGA: Recv ZSGSRD 29408
17-03-18 06:02:43.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.554 -07 000000625 INF: FPGA: Recv ZSGSRD 29407
17-03-18 06:02:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.564 -07 000000561 INF: FPGA: Recv ZSGSRD 29412
17-03-18 06:02:43.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29404
17-03-18 06:02:43.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29407
17-03-18 06:02:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.594 -07 000000618 INF: FPGA: Recv ZSGSRD 29411
17-03-18 06:02:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.604 -07 000000579 INF: FPGA: Recv ZSGSRD 29406
17-03-18 06:02:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.614 -07 000000581 INF: FPGA: Recv ZSGSRD 29402
17-03-18 06:02:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:43.624 -07 000000561 INF: FPGA: Recv ZSGSRD 29407
17-03-18 06:02:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:43.634 -07 000000501 INF: FPGA: Recv ZPIEZORD 24887
17-03-18 06:02:43.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:43.644 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.9 V.
17-03-18 06:02:43.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29407 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29407 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29402 (-128.4 uncal um), Max = 29412 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:43.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29407, posNoise = 5, negNoise = 5
17-03-18 06:02:43.644 -07 000000610 INF: Z Motor: After move to -0.129242, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:43.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:02:43.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:43.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:43.644 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:43.644 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:43.644 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:43.644 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:43.644 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:43.644 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:43.644 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:43.644 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:43.644 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:43.644 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:43.654 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:43.654 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:43.654 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:43.654 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:43.654 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:43.654 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:43.664 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:43.664 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:02:43.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28410 150\n [Camera]
17-03-18 06:02:43.864 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:44.314 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:02:44.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:02:44.324 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:02:44.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:02:44.324 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:44.324 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:44.324 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:02:44.324 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:44.324 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:44.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:02:44.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28410 835
17-03-18 06:02:44.654 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:44.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:02:44.724 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:02:44.724 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:44.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:02:44.724 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:02:44.724 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:44.734 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:44.734 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:02:44.734 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:44.734 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:02:44.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:44.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:44.874 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:44.874 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:44.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:02:44.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:44.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:44.874 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:44.874 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:44.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:02:45.064 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:02:45.064 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:45.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28410 150' command took 2 ms to send, 1396 ms to get response, and 1401 ms overall
17-03-18 06:02:45.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:45.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.1292401584639. ------
17-03-18 06:02:45.074 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:45.074 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13562 mm
17-03-18 06:02:45.074 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:45.284 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:02:45.284 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:02:45.284 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:45.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:02:45.284 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:02:45.284 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:45.284 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:45.284 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:45.284 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:02:45.294 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:02:45.294 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:02:45.294 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 06:02:45.294 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:45.424 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:45.424 -07 000000581 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:02:45.424 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 349 ms to get response, and 358 ms overall
17-03-18 06:02:45.434 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 129 ms to get response, and 130 ms overall
17-03-18 06:02:45.434 -07 000000625 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:45.434 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:45.434 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29627, sync = True, waitForSettling = False)
17-03-18 06:02:45.434 -07 000000581 INF: Z Motor: Moving to -0.135624 mm, started at -0.129240 mm, distance = -6.38 um
17-03-18 06:02:45.434 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:45.434 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:02:45.444 -07 000000581 INF: FPGA: Xmit ZDACW 29627\n [Z Motor]
17-03-18 06:02:45.454 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:46.314 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:02:46.314 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:46.314 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:02:46.314 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 870 ms to get response, and 880 ms overall
17-03-18 06:02:46.314 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 850 ms to get response, and 876 ms overall
17-03-18 06:02:46.314 -07 000000581 INF: FPGA: 'ZDACW 29627' command took 0 ms to send, 860 ms to get response, and 879 ms overall
17-03-18 06:02:46.314 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:46.314 -07 000000608 INF: FPGA: Recv ZDACR 29627
17-03-18 06:02:46.324 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:46.324 -07 000000581 INF: Z Motor: MoveAbsStepped took 889 ms (did NOT wait for settling yet))
17-03-18 06:02:46.364 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:46.374 -07 000000608 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:02:46.374 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:02:46.374 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:46.374 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:02:46.374 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 877 ms, distance = 0.840 mm, average velocity = 0.958 mm/sec
17-03-18 06:02:46.824 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:46.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:47.134 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.000345,
17-03-18 06:02:47.324 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:47.324 -07 000000012 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:02:47.334 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:47.334 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:47.364 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:47.364 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:47.364 -07 000000625 INF: Y Motor: Moved to 70.6875 after 2065 ms (table move)
17-03-18 06:02:47.364 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135624 mm (DAC = 29627)
17-03-18 06:02:47.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.374 -07 000000444 INF: FPGA: Recv ZSGSRD 30406
17-03-18 06:02:47.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:02:47.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.374 -07 000000591 INF: FPGA: Recv ZSGSRD 30405
17-03-18 06:02:47.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:47.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30401
17-03-18 06:02:47.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.394 -07 000000608 INF: FPGA: Recv ZSGSRD 30397
17-03-18 06:02:47.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30400
17-03-18 06:02:47.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.414 -07 000000608 INF: FPGA: Recv ZSGSRD 30395
17-03-18 06:02:47.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.424 -07 000000591 INF: FPGA: Recv ZSGSRD 30401
17-03-18 06:02:47.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30406
17-03-18 06:02:47.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.444 -07 000000012 INF: FPGA: Recv ZSGSRD 30400
17-03-18 06:02:47.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:47.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30403
17-03-18 06:02:47.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.464 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:47.464 -07 000000591 INF: FPGA: Recv ZPIEZORD 26237
17-03-18 06:02:47.474 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.2 V.
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30401 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30401 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30395 (-134.8 uncal um), Max = 30406 (-134.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30401, posNoise = 5, negNoise = 6
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: After move to -0.135624, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: Settle wait time = 1937 ms, measure time = 102 ms (allowed 150 ms), total time = 2039 ms
17-03-18 06:02:47.474 -07 000000579 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:47.524 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2448 ms
17-03-18 06:02:47.524 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:47.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:47.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:47.524 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:47.524 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:47.524 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:47.524 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:47.524 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:02:47.524 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:47.534 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:47.534 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:47.534 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:02:47.534 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:02:47.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:47.584 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:47.884 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:47.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:47.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:47.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:02:47.924 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:47.924 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:47.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:02:48.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:02:48.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:48.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:02:48.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:02:48.024 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:48.024 -07 000000608 INF: Autofocus start
17-03-18 06:02:48.024 -07 000000608 INF: MeasureProfile start
17-03-18 06:02:48.024 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:48.034 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:48.034 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:48.034 -07 000000608 INF: MeasureProfile done
17-03-18 06:02:48.034 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:02:48.034 -07 000000608 INF: Autofocus finished
17-03-18 06:02:48.234 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:48.234 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:48.234 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.13562582533281. ----------
17-03-18 06:02:48.234 -07 000000610 INF: Cycle	144	Tile	14	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:48.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28151, sync = True, waitForSettling = True)
17-03-18 06:02:48.244 -07 000000610 INF: Z Motor: Moving to -0.128867 mm, started at -0.135626 mm, distance = 6.76 um
17-03-18 06:02:48.244 -07 000000610 INF: FPGA: Xmit ZDACW 28151\n [Z Motor]
17-03-18 06:02:48.244 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:02:48.254 -07 000000610 INF: FPGA: 'ZDACW 28151' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:48.254 -07 000000012 INF: FPGA: Recv ZDACR 28151
17-03-18 06:02:48.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:48.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:02:48.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:48.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29352
17-03-18 06:02:48.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.434 -07 000000444 INF: FPGA: Recv ZSGSRD 29349
17-03-18 06:02:48.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.444 -07 000000012 INF: FPGA: Recv ZSGSRD 29347
17-03-18 06:02:48.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.454 -07 000000512 INF: FPGA: Recv ZSGSRD 29353
17-03-18 06:02:48.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.464 -07 000000608 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:02:48.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.474 -07 000000444 INF: FPGA: Recv ZSGSRD 29344
17-03-18 06:02:48.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.484 -07 000000625 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:02:48.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.494 -07 000000581 INF: FPGA: Recv ZSGSRD 29351
17-03-18 06:02:48.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:48.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29351
17-03-18 06:02:48.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:48.514 -07 000000579 INF: FPGA: Recv ZPIEZORD 24802
17-03-18 06:02:48.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:48.524 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -10.0 V.
17-03-18 06:02:48.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29350 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29350 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29344 (-128.1 uncal um), Max = 29353 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:02:48.524 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29350, posNoise = 3, negNoise = 6
17-03-18 06:02:48.524 -07 000000610 INF: Z Motor: After move to -0.128867, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:48.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:02:48.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:48.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:48.524 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:48.524 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:48.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:48.524 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:48.524 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:48.524 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:48.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:48.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:48.524 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:48.524 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:48.524 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:48.524 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:48.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:02:48.534 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:48.544 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:02:48.544 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:02:48.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:02:48.544 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:02:48.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28328 150\n [Camera]
17-03-18 06:02:48.744 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:49.194 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:49.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:49.194 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:49.204 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:49.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:49.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:49.204 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:49.204 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:02:49.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:49.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:02:49.394 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28328 835
17-03-18 06:02:49.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:49.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:02:49.604 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:02:49.604 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:49.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:02:49.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:02:49.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:49.604 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:49.604 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:02:49.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:49.614 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:02:49.754 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:49.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:49.754 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:49.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:49.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:49.764 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:49.764 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:49.764 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:02:49.884 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:49.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:02:49.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:02:49.944 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:49.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28328 150' command took 4 ms to send, 1389 ms to get response, and 1401 ms overall
17-03-18 06:02:49.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:49.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128873978371819. ------
17-03-18 06:02:49.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:49.954 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13566 mm
17-03-18 06:02:49.954 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:49.954 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:02:49.954 -07 000000012 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:02:49.974 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:50.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:02:50.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:02:50.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:50.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:50.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:02:50.174 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29635, sync = True, waitForSettling = False)
17-03-18 06:02:50.174 -07 000000579 INF: Z Motor: Moving to -0.135660 mm, started at -0.128874 mm, distance = -6.79 um
17-03-18 06:02:50.174 -07 000000579 INF: FPGA: Xmit ZDACW 29635\n [Z Motor]
17-03-18 06:02:50.274 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:02:50.274 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:02:50.274 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:50.284 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:02:50.284 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 06:02:50.294 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:50.294 -07 000000444 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:02:50.294 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:02:50.294 -07 000000579 INF: FPGA: 'ZDACW 29635' command took 0 ms to send, 112 ms to get response, and 117 ms overall
17-03-18 06:02:50.294 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 338 ms overall
17-03-18 06:02:50.294 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 312 ms to get response, and 336 ms overall
17-03-18 06:02:50.294 -07 000000012 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:50.294 -07 000000012 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:50.294 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:02:50.304 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:50.304 -07 000000444 INF: FPGA: Recv ZDACR 29635
17-03-18 06:02:50.314 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:50.314 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:02:50.314 -07 000000579 INF: Z Motor: MoveAbsStepped took 135 ms (did NOT wait for settling yet))
17-03-18 06:02:50.324 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:50.514 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:50.514 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 223 ms overall
17-03-18 06:02:50.694 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:02:50.694 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-18 06:02:50.744 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:50.754 -07 000000480 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:02:50.754 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:02:50.754 -07 000000012 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:50.754 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:02:50.754 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.092 mm/sec
17-03-18 06:02:51.704 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:51.704 -07 000000606 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:02:51.714 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.714 -07 000000012 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:51.744 -07 000000012 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:51.744 -07 000000012 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:51.744 -07 000000012 INF: Y Motor: Moved to 71.5176 after 1786 ms (table move)
17-03-18 06:02:51.744 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135660 mm (DAC = 29635)
17-03-18 06:02:51.744 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.754 -07 000000579 INF: FPGA: Recv ZSGSRD 30409
17-03-18 06:02:51.754 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:02:51.754 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.754 -07 000000480 INF: FPGA: Recv ZSGSRD 30407
17-03-18 06:02:51.764 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.764 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.764 -07 000000590 INF: FPGA: Recv ZSGSRD 30411
17-03-18 06:02:51.774 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.774 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.774 -07 000000012 INF: FPGA: Recv ZSGSRD 30407
17-03-18 06:02:51.784 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.784 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.784 -07 000000444 INF: FPGA: Recv ZSGSRD 30407
17-03-18 06:02:51.794 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.794 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.794 -07 000000012 INF: FPGA: Recv ZSGSRD 30405
17-03-18 06:02:51.804 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.804 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.804 -07 000000590 INF: FPGA: Recv ZSGSRD 30397
17-03-18 06:02:51.814 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.814 -07 000000579 INF: FPGA: Recv ZSGSRD 30412
17-03-18 06:02:51.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.824 -07 000000444 INF: FPGA: Recv ZSGSRD 30401
17-03-18 06:02:51.824 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:51.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:51.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:51.834 -07 000000590 INF: FPGA: Recv ZSGSRD 30408
17-03-18 06:02:51.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.844 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:51.844 -07 000000606 INF: FPGA: Recv ZPIEZORD 26263
17-03-18 06:02:51.854 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -9.1 V.
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30406 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30407 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30397 (-134.8 uncal um), Max = 30412 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30406, posNoise = 6, negNoise = 9
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: After move to -0.135660, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: Settle wait time = 1572 ms, measure time = 103 ms (allowed 150 ms), total time = 1675 ms
17-03-18 06:02:51.854 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:51.904 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1945 ms
17-03-18 06:02:51.904 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:51.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:51.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:51.904 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:51.904 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:51.904 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:51.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:51.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:51.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:51.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:02:51.914 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:51.914 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:02:51.924 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:02:51.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:51.964 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:52.264 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:52.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:52.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:52.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:02:52.304 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:52.304 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:52.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:02:52.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:02:52.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:52.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:52.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:02:52.404 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:52.404 -07 000000444 INF: Autofocus start
17-03-18 06:02:52.404 -07 000000444 INF: MeasureProfile start
17-03-18 06:02:52.404 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:52.414 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:52.414 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:52.414 -07 000000444 INF: MeasureProfile done
17-03-18 06:02:52.414 -07 000000444 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:02:52.414 -07 000000444 INF: Autofocus finished
17-03-18 06:02:52.494 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.99219,
17-03-18 06:02:52.614 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:52.614 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:52.624 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135657946393519. ----------
17-03-18 06:02:52.624 -07 000000610 INF: Cycle	144	Tile	15	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:52.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28130, sync = True, waitForSettling = True)
17-03-18 06:02:52.624 -07 000000610 INF: Z Motor: Moving to -0.128771 mm, started at -0.135658 mm, distance = 6.89 um
17-03-18 06:02:52.624 -07 000000610 INF: FPGA: Xmit ZDACW 28130\n [Z Motor]
17-03-18 06:02:52.624 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:02:52.634 -07 000000610 INF: FPGA: 'ZDACW 28130' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:52.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:52.634 -07 000000480 INF: FPGA: Recv ZDACR 28130
17-03-18 06:02:52.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:52.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.794 -07 000000012 INF: FPGA: Recv ZSGSRD 29338
17-03-18 06:02:52.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.804 -07 000000608 INF: FPGA: Recv ZSGSRD 29335
17-03-18 06:02:52.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.814 -07 000000512 INF: FPGA: Recv ZSGSRD 29338
17-03-18 06:02:52.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.824 -07 000000608 INF: FPGA: Recv ZSGSRD 29339
17-03-18 06:02:52.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.834 -07 000000512 INF: FPGA: Recv ZSGSRD 29335
17-03-18 06:02:52.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29335
17-03-18 06:02:52.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.854 -07 000000012 INF: FPGA: Recv ZSGSRD 29334
17-03-18 06:02:52.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.864 -07 000000606 INF: FPGA: Recv ZSGSRD 29339
17-03-18 06:02:52.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.874 -07 000000512 INF: FPGA: Recv ZSGSRD 29334
17-03-18 06:02:52.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:52.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29336
17-03-18 06:02:52.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:52.894 -07 000000608 INF: FPGA: Recv ZPIEZORD 24850
17-03-18 06:02:52.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:52.904 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -9.8 V.
17-03-18 06:02:52.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29336 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29336 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29334 (-128.0 uncal um), Max = 29339 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:02:52.904 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29336, posNoise = 3, negNoise = 2
17-03-18 06:02:52.904 -07 000000610 INF: Z Motor: After move to -0.128771, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:52.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:02:52.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:52.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:52.904 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:52.904 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:52.904 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:52.904 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:52.904 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:52.904 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:52.904 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:52.904 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:52.904 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:52.904 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:52.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:52.914 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:52.914 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:52.914 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:52.914 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:02:52.914 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:02:52.914 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:52.914 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:52.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28307 150\n [Camera]
17-03-18 06:02:53.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:53.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:53.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:53.574 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:53.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:53.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:53.574 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:53.574 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-18 06:02:53.574 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:53.574 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:53.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:02:53.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28307 835
17-03-18 06:02:53.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:53.974 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:02:53.974 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:02:53.974 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:53.974 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:02:53.974 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:02:53.974 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:53.974 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:53.974 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:02:53.974 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:53.984 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:02:54.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:54.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:54.134 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:54.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:54.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:54.134 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:54.134 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:54.134 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:54.134 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:02:54.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:02:54.324 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:02:54.324 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:54.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28307 150' command took 2 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-18 06:02:54.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:54.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128784039401834. ------
17-03-18 06:02:54.334 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13514 mm
17-03-18 06:02:54.334 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:54.334 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:54.334 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:54.334 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:02:54.334 -07 000000608 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:02:54.344 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:54.344 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:54.354 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:54.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:02:54.544 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:02:54.544 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:54.544 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:02:54.544 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:02:54.544 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:54.544 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:54.544 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:02:54.544 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:54.554 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:02:54.554 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29522, sync = True, waitForSettling = False)
17-03-18 06:02:54.554 -07 000000512 INF: Z Motor: Moving to -0.135143 mm, started at -0.128784 mm, distance = -6.36 um
17-03-18 06:02:54.554 -07 000000512 INF: FPGA: Xmit ZDACW 29522\n [Z Motor]
17-03-18 06:02:54.564 -07 000000012 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:02:54.564 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:54.564 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:02:54.564 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 222 ms overall
17-03-18 06:02:54.564 -07 000000512 INF: FPGA: 'ZDACW 29522' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 06:02:54.564 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:54.564 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 212 ms to get response, and 227 ms overall
17-03-18 06:02:54.564 -07 000000608 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:54.564 -07 000000012 INF: FPGA: Recv ZDACR 29522
17-03-18 06:02:54.564 -07 000000608 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:54.564 -07 000000608 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:02:54.574 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:54.574 -07 000000512 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-18 06:02:54.574 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:54.944 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 06:02:54.944 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:02:55.004 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:55.004 -07 000000462 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:02:55.014 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:55.014 -07 000000608 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:55.014 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:02:55.014 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.224 mm/sec
17-03-18 06:02:55.964 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:55.964 -07 000000618 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:02:55.974 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:55.974 -07 000000608 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:56.004 -07 000000608 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:02:56.004 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:02:56.004 -07 000000608 INF: Y Motor: Moved to 72.3481 after 1666 ms (table move)
17-03-18 06:02:56.004 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135143 mm (DAC = 29522)
17-03-18 06:02:56.004 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.004 -07 000000012 INF: FPGA: Recv ZSGSRD 30332
17-03-18 06:02:56.014 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:02:56.014 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30324
17-03-18 06:02:56.024 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.024 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.024 -07 000000618 INF: FPGA: Recv ZSGSRD 30322
17-03-18 06:02:56.034 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.034 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.034 -07 000000444 INF: FPGA: Recv ZSGSRD 30323
17-03-18 06:02:56.044 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.044 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.044 -07 000000462 INF: FPGA: Recv ZSGSRD 30327
17-03-18 06:02:56.054 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.054 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.054 -07 000000444 INF: FPGA: Recv ZSGSRD 30331
17-03-18 06:02:56.064 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.064 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.064 -07 000000561 INF: FPGA: Recv ZSGSRD 30331
17-03-18 06:02:56.074 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.074 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30325
17-03-18 06:02:56.084 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.084 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.084 -07 000000462 INF: FPGA: Recv ZSGSRD 30324
17-03-18 06:02:56.094 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.094 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:56.094 -07 000000012 INF: FPGA: Recv ZSGSRD 30327
17-03-18 06:02:56.104 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.104 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:56.104 -07 000000012 INF: FPGA: Recv ZPIEZORD 26142
17-03-18 06:02:56.114 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -9.2 V.
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30327 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30326 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30322 (-134.3 uncal um), Max = 30332 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30327, posNoise = 5, negNoise = 5
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: After move to -0.135143, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-18 06:02:56.114 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:02:56.164 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1829 ms
17-03-18 06:02:56.164 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:02:56.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:56.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:56.164 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:56.164 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:02:56.164 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:56.164 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:56.164 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:56.164 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:02:56.174 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:56.174 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:02:56.184 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:02:56.184 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:02:56.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:02:56.234 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:02:56.534 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:02:56.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:02:56.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:02:56.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) start.
17-03-18 06:02:56.574 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:02:56.574 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 06:02:56.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 06:02:56.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:02:56.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:56.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:02:56.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:02:56.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:56.674 -07 000000012 INF: Autofocus start
17-03-18 06:02:56.674 -07 000000012 INF: MeasureProfile start
17-03-18 06:02:56.674 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:56.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:02:56.684 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:02:56.684 -07 000000012 INF: MeasureProfile done
17-03-18 06:02:56.684 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:02:56.684 -07 000000012 INF: Autofocus finished
17-03-18 06:02:56.824 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:02:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:02:56.884 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:02:56.884 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:02:56.884 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.13515043363432. ----------
17-03-18 06:02:56.884 -07 000000610 INF: Cycle	144	Tile	16	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:02:56.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28030, sync = True, waitForSettling = True)
17-03-18 06:02:56.894 -07 000000610 INF: Z Motor: Moving to -0.128313 mm, started at -0.135150 mm, distance = 6.84 um
17-03-18 06:02:56.894 -07 000000610 INF: FPGA: Xmit ZDACW 28030\n [Z Motor]
17-03-18 06:02:56.894 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:02:56.904 -07 000000610 INF: FPGA: 'ZDACW 28030' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:56.904 -07 000000444 INF: FPGA: Recv ZDACR 28030
17-03-18 06:02:56.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:56.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:02:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.064 -07 000000561 INF: FPGA: Recv ZSGSRD 29270
17-03-18 06:02:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:02:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.074 -07 000000618 INF: FPGA: Recv ZSGSRD 29267
17-03-18 06:02:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.084 -07 000000462 INF: FPGA: Recv ZSGSRD 29265
17-03-18 06:02:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29264
17-03-18 06:02:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.104 -07 000000444 INF: FPGA: Recv ZSGSRD 29267
17-03-18 06:02:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29266
17-03-18 06:02:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.124 -07 000000608 INF: FPGA: Recv ZSGSRD 29263
17-03-18 06:02:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.134 -07 000000501 INF: FPGA: Recv ZSGSRD 29264
17-03-18 06:02:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.144 -07 000000462 INF: FPGA: Recv ZSGSRD 29265
17-03-18 06:02:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:02:57.154 -07 000000462 INF: FPGA: Recv ZSGSRD 29262
17-03-18 06:02:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:02:57.164 -07 000000608 INF: FPGA: Recv ZPIEZORD 24730
17-03-18 06:02:57.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:57.174 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -9.9 V.
17-03-18 06:02:57.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29265 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29265 (-127.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29262 (-127.5 uncal um), Max = 29270 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:02:57.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29265, posNoise = 5, negNoise = 3
17-03-18 06:02:57.174 -07 000000610 INF: Z Motor: After move to -0.128313, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:02:57.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:02:57.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:02:57.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:02:57.174 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:02:57.174 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:02:57.174 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:02:57.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:02:57.174 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:02:57.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:02:57.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:02:57.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:02:57.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:02:57.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:02:57.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:02:57.174 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:02:57.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:02:57.184 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:02:57.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:02:57.184 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:02:57.194 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:02:57.194 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:02:57.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28206 150\n [Camera]
17-03-18 06:02:57.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:02:57.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:02:57.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:02:57.844 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:57.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:57.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:02:57.844 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:02:57.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:02:57.844 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:57.844 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:57.844 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:02:57.854 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 3.990831,
17-03-18 06:02:58.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28206 835
17-03-18 06:02:58.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:02:58.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:02:58.224 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:02:58.224 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:58.224 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:02:58.224 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:02:58.224 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:58.224 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:02:58.224 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:02:58.234 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:58.234 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:02:58.404 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:02:58.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:02:58.404 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:02:58.404 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:02:58.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:02:58.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:02:58.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:02:58.404 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:02:58.404 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:02:58.404 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:02:58.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-18 06:02:58.594 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:02:58.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28206 150' command took 2 ms to send, 1394 ms to get response, and 1400 ms overall
17-03-18 06:02:58.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:02:58.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.128327920339769. ------
17-03-18 06:02:58.594 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:02:58.594 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13482 mm
17-03-18 06:02:58.594 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:02:58.604 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:02:58.604 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:02:58.604 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29451, sync = True, waitForSettling = False)
17-03-18 06:02:58.604 -07 000000591 INF: Z Motor: Moving to -0.134818 mm, started at -0.128328 mm, distance = -6.49 um
17-03-18 06:02:58.604 -07 000000591 INF: FPGA: Xmit ZDACW 29451\n [Z Motor]
17-03-18 06:02:58.604 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:02:58.604 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:02:58.604 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:02:58.614 -07 000000591 INF: FPGA: 'ZDACW 29451' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:02:58.614 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:02:58.614 -07 000000581 INF: FPGA: Recv ZDACR 29451
17-03-18 06:02:58.624 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:02:58.624 -07 000000591 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:02:58.624 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:02:58.634 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:58.634 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:02:58.644 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 06:02:58.644 -07 000000501 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:58.644 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:02:58.644 -07 000000501 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:02:58.644 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:02:58.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:02:58.814 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:02:58.814 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:58.814 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:02:58.814 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:02:58.814 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:02:58.814 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:02:58.814 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:02:58.814 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:02:58.824 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:02:58.824 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:02:58.824 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 222 ms overall
17-03-18 06:02:59.024 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:02:59.024 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 379 ms overall
17-03-18 06:02:59.074 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:02:59.074 -07 000000480 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:02:59.084 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:02:59.084 -07 000000501 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:02:59.084 -07 000000501 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:02:59.084 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.228 mm/sec
17-03-18 06:03:00.034 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:00.034 -07 000000444 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:03:00.044 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:03:00.044 -07 000000501 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:00.074 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:03:00.074 -07 000000501 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:03:00.074 -07 000000501 INF: Y Motor: Moved to 73.1748 after 1468 ms (table move)
17-03-18 06:03:00.074 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134818 mm (DAC = 29451)
17-03-18 06:03:00.074 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.074 -07 000000590 INF: FPGA: Recv ZSGSRD 30277
17-03-18 06:03:00.084 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:03:00.084 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.084 -07 000000501 INF: FPGA: Recv ZSGSRD 30277
17-03-18 06:03:00.094 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.094 -07 000000561 INF: FPGA: Recv ZSGSRD 30276
17-03-18 06:03:00.104 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.104 -07 000000606 INF: FPGA: Recv ZSGSRD 30276
17-03-18 06:03:00.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.114 -07 000000561 INF: FPGA: Recv ZSGSRD 30276
17-03-18 06:03:00.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.124 -07 000000606 INF: FPGA: Recv ZSGSRD 30274
17-03-18 06:03:00.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.134 -07 000000561 INF: FPGA: Recv ZSGSRD 30278
17-03-18 06:03:00.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30268
17-03-18 06:03:00.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.154 -07 000000590 INF: FPGA: Recv ZSGSRD 30273
17-03-18 06:03:00.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:00.164 -07 000000606 INF: FPGA: Recv ZSGSRD 30278
17-03-18 06:03:00.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.174 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:00.174 -07 000000561 INF: FPGA: Recv ZPIEZORD 26083
17-03-18 06:03:00.184 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -9.2 V.
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30275 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30276 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30278 (-134.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30275, posNoise = 3, negNoise = 7
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: After move to -0.134818, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: Settle wait time = 1474 ms, measure time = 104 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:03:00.184 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:03:00.234 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:03:00.234 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:03:00.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:00.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:00.234 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:00.234 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:00.234 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:03:00.234 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:00.234 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:03:00.234 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:03:00.244 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:03:00.244 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:03:00.254 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:03:00.254 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:03:00.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:03:00.294 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:03:00.594 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:03:00.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:03:00.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:03:00.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-18 06:03:00.634 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:03:00.634 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:03:00.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:03:00.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:03:00.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:00.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:03:00.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:03:00.734 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:03:00.734 -07 000000625 INF: Autofocus start
17-03-18 06:03:00.734 -07 000000625 INF: MeasureProfile start
17-03-18 06:03:00.744 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:03:00.744 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:03:00.744 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:03:00.744 -07 000000625 INF: MeasureProfile done
17-03-18 06:03:00.754 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:03:00.754 -07 000000625 INF: Autofocus finished
17-03-18 06:03:00.944 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:03:00.944 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:03:00.954 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134816374602948. ----------
17-03-18 06:03:00.954 -07 000000610 INF: Cycle	144	Tile	17	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:03:00.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27975, sync = True, waitForSettling = True)
17-03-18 06:03:00.954 -07 000000610 INF: Z Motor: Moving to -0.128061 mm, started at -0.134816 mm, distance = 6.76 um
17-03-18 06:03:00.954 -07 000000610 INF: FPGA: Xmit ZDACW 27975\n [Z Motor]
17-03-18 06:03:00.954 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:03:00.964 -07 000000610 INF: FPGA: 'ZDACW 27975' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:03:00.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:03:00.964 -07 000000606 INF: FPGA: Recv ZDACR 27975
17-03-18 06:03:00.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:00.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:03:01.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.124 -07 000000608 INF: FPGA: Recv ZSGSRD 29217
17-03-18 06:03:01.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.134 -07 000000501 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:03:01.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.144 -07 000000625 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:03:01.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29221
17-03-18 06:03:01.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.164 -07 000000561 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:03:01.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.174 -07 000000462 INF: FPGA: Recv ZSGSRD 29222
17-03-18 06:03:01.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.184 -07 000000625 INF: FPGA: Recv ZSGSRD 29226
17-03-18 06:03:01.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29224
17-03-18 06:03:01.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.204 -07 000000561 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:03:01.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:01.214 -07 000000501 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:03:01.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:01.224 -07 000000625 INF: FPGA: Recv ZPIEZORD 24701
17-03-18 06:03:01.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:01.234 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.9 V.
17-03-18 06:03:01.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29224 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29223 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29217 (-127.2 uncal um), Max = 29230 (-127.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:03:01.234 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29224, posNoise = 6, negNoise = 7
17-03-18 06:03:01.234 -07 000000610 INF: Z Motor: After move to -0.128061, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:01.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:03:01.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:01.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:01.234 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:01.234 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:01.234 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:03:01.234 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:03:01.234 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:03:01.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:01.234 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:03:01.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:03:01.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:03:01.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:03:01.244 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:03:01.244 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:03:01.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:03:01.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:03:01.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:03:01.254 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:03:01.254 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:03:01.254 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:03:01.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28151 150\n [Camera]
17-03-18 06:03:01.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:03:01.824 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:03:01.904 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:03:01.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:03:01.904 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:03:01.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:03:01.904 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:01.904 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:01.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:03:01.904 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:01.904 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:01.904 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:03:02.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28151 835
17-03-18 06:03:02.244 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:03:02.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:03:02.304 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:03:02.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:03:02.304 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:02.304 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:03:02.304 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:02.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:02.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:03:02.304 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:02.314 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:03:02.464 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:03:02.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:03:02.464 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:02.464 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:02.464 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:03:02.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:03:02.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:03:02.464 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:02.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:02.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 06:03:02.654 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:03:02.654 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:03:02.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28151 150' command took 2 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:03:02.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:03:02.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.128064527641957. ------
17-03-18 06:03:02.654 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:03:02.654 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13386 mm
17-03-18 06:03:02.654 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:03:02.664 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:03:02.664 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:03:02.664 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:03:02.664 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:03:02.664 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:03:02.674 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:02.854 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:03:02.854 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:03:02.854 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:02.854 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:03:02.854 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:03:02.854 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:02.864 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:03:02.864 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:03:02.864 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:03:02.864 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:03:02.874 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29241, sync = True, waitForSettling = False)
17-03-18 06:03:02.874 -07 000000462 INF: Z Motor: Moving to -0.133857 mm, started at -0.128065 mm, distance = -5.79 um
17-03-18 06:03:02.874 -07 000000462 INF: FPGA: Xmit ZDACW 29241\n [Z Motor]
17-03-18 06:03:02.874 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:03:02.874 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:03:02.874 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:03:02.874 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 209 ms to get response, and 216 ms overall
17-03-18 06:03:02.874 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 214 ms overall
17-03-18 06:03:02.874 -07 000000625 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:02.884 -07 000000462 INF: FPGA: 'ZDACW 29241' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:03:02.884 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:03:02.884 -07 000000501 INF: FPGA: Recv ZDACR 29241
17-03-18 06:03:02.884 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:03:02.884 -07 000000625 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:03:02.894 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:02.894 -07 000000462 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 06:03:02.904 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:03:03.214 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.007176,
17-03-18 06:03:03.274 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 06:03:03.274 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:03:03.314 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:03.324 -07 000000608 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:03:03.334 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:03:03.334 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:03.334 -07 000000625 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:03:03.334 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.848 mm, average velocity = 2.146 mm/sec
17-03-18 06:03:04.284 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:04.284 -07 000000512 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:03:04.294 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.294 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:04.314 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:03:04.314 -07 000000625 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:03:04.314 -07 000000625 INF: Y Motor: Moved to 74.0068 after 1650 ms (table move)
17-03-18 06:03:04.314 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133857 mm (DAC = 29241)
17-03-18 06:03:04.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.324 -07 000000512 INF: FPGA: Recv ZSGSRD 30125
17-03-18 06:03:04.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:03:04.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.324 -07 000000625 INF: FPGA: Recv ZSGSRD 30107
17-03-18 06:03:04.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:03:04.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.334 -07 000000012 INF: FPGA: Recv ZSGSRD 30120
17-03-18 06:03:04.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.344 -07 000000608 INF: FPGA: Recv ZSGSRD 30125
17-03-18 06:03:04.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.354 -07 000000579 INF: FPGA: Recv ZSGSRD 30126
17-03-18 06:03:04.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.364 -07 000000625 INF: FPGA: Recv ZSGSRD 30121
17-03-18 06:03:04.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.374 -07 000000512 INF: FPGA: Recv ZSGSRD 30129
17-03-18 06:03:04.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.384 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30126
17-03-18 06:03:04.394 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.394 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.394 -07 000000462 INF: FPGA: Recv ZSGSRD 30130
17-03-18 06:03:04.404 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.404 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:04.404 -07 000000579 INF: FPGA: Recv ZSGSRD 30124
17-03-18 06:03:04.414 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.414 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:04.414 -07 000000618 INF: FPGA: Recv ZPIEZORD 25892
17-03-18 06:03:04.424 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.462 V. Piezo Error = -9.3 V.
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30123 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30125 (-133.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30107 (-132.9 uncal um), Max = 30130 (-133.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30123, posNoise = 7, negNoise = 16
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: After move to -0.133857, error = 0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms
17-03-18 06:03:04.424 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:03:04.474 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-18 06:03:04.474 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:03:04.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:04.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:04.474 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:04.474 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:03:04.474 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:04.474 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:04.474 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:03:04.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:03:04.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:03:04.484 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:03:04.484 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:03:04.484 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:03:04.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:03:04.534 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:03:04.834 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:03:04.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:03:04.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:03:04.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:03:04.874 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:03:04.874 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 06:03:04.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:03:04.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:03:04.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:04.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:03:04.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:03:04.974 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:03:04.974 -07 000000561 INF: Autofocus start
17-03-18 06:03:04.974 -07 000000561 INF: MeasureProfile start
17-03-18 06:03:04.974 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:03:04.984 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:03:04.984 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:03:04.984 -07 000000561 INF: MeasureProfile done
17-03-18 06:03:04.984 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:03:04.984 -07 000000561 INF: Autofocus finished
17-03-18 06:03:05.184 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:03:05.184 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:03:05.184 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.1338398943574. ----------
17-03-18 06:03:05.184 -07 000000610 INF: Cycle	144	Tile	18	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:03:05.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27748, sync = True, waitForSettling = True)
17-03-18 06:03:05.194 -07 000000610 INF: Z Motor: Moving to -0.127022 mm, started at -0.133840 mm, distance = 6.82 um
17-03-18 06:03:05.194 -07 000000610 INF: FPGA: Xmit ZDACW 27748\n [Z Motor]
17-03-18 06:03:05.194 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:03:05.204 -07 000000610 INF: FPGA: 'ZDACW 27748' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:03:05.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:03:05.204 -07 000000625 INF: FPGA: Recv ZDACR 27748
17-03-18 06:03:05.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:03:05.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.364 -07 000000561 INF: FPGA: Recv ZSGSRD 29060
17-03-18 06:03:05.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.374 -07 000000501 INF: FPGA: Recv ZSGSRD 29059
17-03-18 06:03:05.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29060
17-03-18 06:03:05.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.394 -07 000000579 INF: FPGA: Recv ZSGSRD 29064
17-03-18 06:03:05.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.404 -07 000000501 INF: FPGA: Recv ZSGSRD 29067
17-03-18 06:03:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29067
17-03-18 06:03:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.424 -07 000000501 INF: FPGA: Recv ZSGSRD 29066
17-03-18 06:03:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29066
17-03-18 06:03:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.444 -07 000000462 INF: FPGA: Recv ZSGSRD 29061
17-03-18 06:03:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:05.454 -07 000000608 INF: FPGA: Recv ZSGSRD 29061
17-03-18 06:03:05.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:05.464 -07 000000608 INF: FPGA: Recv ZPIEZORD 24467
17-03-18 06:03:05.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:05.474 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.234 V. Piezo Error = -10.1 V.
17-03-18 06:03:05.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29063 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29062 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29059 (-126.2 uncal um), Max = 29067 (-126.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:03:05.474 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29063, posNoise = 4, negNoise = 4
17-03-18 06:03:05.474 -07 000000610 INF: Z Motor: After move to -0.127022, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:05.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:03:05.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:05.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:05.474 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:05.474 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:03:05.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:05.474 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:05.474 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:03:05.474 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:03:05.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:03:05.474 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:03:05.474 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:03:05.474 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:03:05.484 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:03:05.484 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:03:05.484 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:03:05.484 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:03:05.504 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 20 ms.
17-03-18 06:03:05.504 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:03:05.504 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 20 ms.
17-03-18 06:03:05.504 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:03:05.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 27925 150\n [Camera]
17-03-18 06:03:05.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:03:06.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:03:06.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:03:06.154 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:06.154 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:06.154 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:03:06.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:03:06.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:03:06.154 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:06.154 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:06.154 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:03:06.344 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27925 835
17-03-18 06:03:06.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:03:06.544 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:03:06.544 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:03:06.544 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:06.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:03:06.544 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:03:06.544 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:06.554 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:06.554 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:06.554 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:03:06.554 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:03:06.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:03:06.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:03:06.714 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:06.714 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:06.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:03:06.714 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:03:06.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:03:06.714 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:06.714 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:06.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:03:06.824 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 143. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:03:06.904 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:03:06.904 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:03:06.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 27925 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-18 06:03:06.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:03:06.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.127030229487134. ------
17-03-18 06:03:06.914 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:03:06.914 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13347 mm
17-03-18 06:03:06.914 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:03:06.914 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29156, sync = True, waitForSettling = False)
17-03-18 06:03:06.914 -07 000000608 INF: Z Motor: Moving to -0.133468 mm, started at -0.127030 mm, distance = -6.44 um
17-03-18 06:03:06.914 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:03:06.914 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:03:06.924 -07 000000608 INF: FPGA: Xmit ZDACW 29156\n [Z Motor]
17-03-18 06:03:06.924 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:03:06.924 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:03:06.924 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:03:06.934 -07 000000608 INF: FPGA: 'ZDACW 29156' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:03:06.934 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:06.934 -07 000000606 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:03:06.944 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:03:06.944 -07 000000512 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:06.944 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:03:06.944 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:03:06.944 -07 000000512 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:03:06.954 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:03:06.954 -07 000000591 INF: FPGA: Recv ZDACR 29156
17-03-18 06:03:06.964 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:03:06.964 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:03:06.964 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:03:07.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:03:07.114 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:03:07.114 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:07.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:03:07.124 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:03:07.124 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:07.124 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:03:07.124 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:03:07.124 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:03:07.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:03:07.144 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:03:07.144 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 06:03:07.334 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:03:07.334 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:03:07.374 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:07.374 -07 000000618 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:03:07.384 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:07.384 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:07.384 -07 000000512 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:03:07.384 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-18 06:03:08.334 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:08.334 -07 000000608 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:03:08.344 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:03:08.344 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:08.364 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:03:08.364 -07 000000512 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:03:08.364 -07 000000512 INF: Y Motor: Moved to 74.8306 after 1445 ms (table move)
17-03-18 06:03:08.364 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133468 mm (DAC = 29156)
17-03-18 06:03:08.364 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.364 -07 000000512 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:03:08.374 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:03:08.374 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.374 -07 000000512 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:03:08.384 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.384 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.384 -07 000000581 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:03:08.394 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.394 -07 000000591 INF: FPGA: Recv ZSGSRD 30069
17-03-18 06:03:08.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.404 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.404 -07 000000444 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:03:08.414 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.414 -07 000000590 INF: FPGA: Recv ZSGSRD 30070
17-03-18 06:03:08.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.424 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.424 -07 000000444 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:03:08.434 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.434 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30061
17-03-18 06:03:08.444 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.444 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.444 -07 000000444 INF: FPGA: Recv ZSGSRD 30064
17-03-18 06:03:08.454 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.454 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:08.454 -07 000000591 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:03:08.464 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.464 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:08.464 -07 000000618 INF: FPGA: Recv ZPIEZORD 25872
17-03-18 06:03:08.474 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.2 V.
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30065 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30064 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30061 (-132.7 uncal um), Max = 30070 (-132.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30065, posNoise = 5, negNoise = 4
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: After move to -0.133468, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-18 06:03:08.474 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:03:08.524 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 06:03:08.524 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:03:08.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:08.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:08.524 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:08.524 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:08.524 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:03:08.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:08.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:03:08.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:03:08.534 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:03:08.534 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:03:08.534 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:03:08.544 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:03:08.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:03:08.574 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.024884,
17-03-18 06:03:08.584 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:03:08.884 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:03:08.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:03:08.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:03:08.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:03:08.924 -07 000000608 INF: FPGA: Recv @CAMSNAP 381
17-03-18 06:03:08.924 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 06:03:08.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:03:09.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:03:09.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:09.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:03:09.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:03:09.024 -07 000000606 INF: Autofocus start
17-03-18 06:03:09.024 -07 000000606 INF: MeasureProfile start
17-03-18 06:03:09.024 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:03:09.024 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:03:09.034 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:03:09.034 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:03:09.034 -07 000000606 INF: MeasureProfile done
17-03-18 06:03:09.034 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:03:09.034 -07 000000606 INF: Autofocus finished
17-03-18 06:03:09.234 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:03:09.234 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 06:03:09.234 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133467290053178. ----------
17-03-18 06:03:09.234 -07 000000610 INF: Cycle	144	Tile	19	Exposure Settings		A	450	G	216	T	216	C	450
17-03-18 06:03:09.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27680, sync = True, waitForSettling = True)
17-03-18 06:03:09.244 -07 000000610 INF: Z Motor: Moving to -0.126711 mm, started at -0.133467 mm, distance = 6.76 um
17-03-18 06:03:09.244 -07 000000610 INF: FPGA: Xmit ZDACW 27680\n [Z Motor]
17-03-18 06:03:09.244 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:03:09.254 -07 000000610 INF: FPGA: 'ZDACW 27680' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:03:09.254 -07 000000618 INF: FPGA: Recv ZDACR 27680
17-03-18 06:03:09.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:03:09.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.414 -07 000000581 INF: FPGA: Recv ZSGSRD 29020
17-03-18 06:03:09.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:03:09.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29017
17-03-18 06:03:09.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.434 -07 000000590 INF: FPGA: Recv ZSGSRD 29014
17-03-18 06:03:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29015
17-03-18 06:03:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.454 -07 000000581 INF: FPGA: Recv ZSGSRD 29016
17-03-18 06:03:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.464 -07 000000480 INF: FPGA: Recv ZSGSRD 29015
17-03-18 06:03:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.474 -07 000000581 INF: FPGA: Recv ZSGSRD 29019
17-03-18 06:03:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29013
17-03-18 06:03:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29012
17-03-18 06:03:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:03:09.504 -07 000000480 INF: FPGA: Recv ZSGSRD 29014
17-03-18 06:03:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:03:09.514 -07 000000480 INF: FPGA: Recv ZPIEZORD 24460
17-03-18 06:03:09.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:09.524 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.224 V. Piezo Error = -10.0 V.
17-03-18 06:03:09.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29016 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29015 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29012 (-125.9 uncal um), Max = 29020 (-126.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:03:09.524 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29016, posNoise = 4, negNoise = 4
17-03-18 06:03:09.524 -07 000000610 INF: Z Motor: After move to -0.126711, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:03:09.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:03:09.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:03:09.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:03:09.524 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:03:09.524 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:03:09.524 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:03:09.524 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:03:09.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:03:09.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:03:09.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:03:09.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:03:09.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:03:09.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:03:09.534 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:03:09.534 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:03:09.534 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:03:09.534 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:03:09.544 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:03:09.544 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:03:09.544 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:03:09.544 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:03:09.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 27856 150\n [Camera]
17-03-18 06:03:09.744 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:03:10.194 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-18 06:03:10.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-18 06:03:10.194 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:10.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:10.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:03:10.194 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-18 06:03:10.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-18 06:03:10.194 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:10.194 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:10.194 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:03:10.384 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27856 835
17-03-18 06:03:10.534 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-18 06:03:10.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:03:10.584 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:03:10.584 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:10.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:03:10.594 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:03:10.594 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:10.594 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:03:10.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:03:10.594 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:03:10.594 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:03:10.754 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-18 06:03:10.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-18 06:03:10.754 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:03:10.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-18 06:03:10.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-18 06:03:10.904 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:03:10.904 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:03:10.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:03:10.914 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:03:10.914 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:03:10.944 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-18 06:03:10.944 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:03:10.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 27856 150' command took 4 ms to send, 1394 ms to get response, and 1401 ms overall
17-03-18 06:03:11.304 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:03:11.304 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:03:11.304 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:11.304 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:03:11.304 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:03:11.304 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:03:11.314 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:11.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:03:11.314 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 560 ms.
17-03-18 06:03:11.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:03:11.324 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:03:11.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:03:11.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:03:11.394 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:03:11.414 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 06:03:11.414 -07 000000610 INF: Imaging Cycle 144: ScanTilesCommand Cycle 144 time end. Duration was 168574 ms.
17-03-18 06:03:11.414 -07 000000610 INF: =================== Cycle #144 ===================
17-03-18 06:03:11.414 -07 000000610 INF: ===================  ===================
17-03-18 06:03:11.414 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:03:11.424 -07 000000480 INF: FPGA: Recv EXLED1ADCR 23
17-03-18 06:03:11.424 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:03:11.424 -07 000000590 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-18 06:03:11.424 -07 000000590 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 144, FrontChillerTemperature: 4.024884, FrontChillerHeatSinkTemperature: 0.469694, AmbientTemperature: 18.64325, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.27863, GreenLEDSensorTemperature: 27.37604, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-18 06:03:11.534 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.