17-03-18 06:03:11.584 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:11.584 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:03:11.584 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 06:03:11.584 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:11.584 -07 000000590 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:03:11.594 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:03:11.594 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:11.594 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:03:11.594 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:03:11.594 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:03:11.714 -07 000000480 INF: FPGA: Recv YMVTO 154378 875
17-03-18 06:03:11.714 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-18 06:03:11.714 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:03:11.714 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 875 steps (0.547 mm). Slippage = -0.003 mm (0.00%).
17-03-18 06:03:11.714 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 06:03:11.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:03:13.934 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.016692,
17-03-18 06:03:14.714 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:03:14.714 -07 000000480 INF: FPGA: Recv YRDPOS 154381
17-03-18 06:03:14.724 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:14.724 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:03:14.744 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:03:14.744 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 06:03:14.744 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3156 ms
17-03-18 06:03:14.744 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 60° ===================
17-03-18 06:03:14.744 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:03:14.744 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:03:14.754 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:03:14.754 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:03:14.754 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:03:14.754 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 06:03:14.764 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:03:14.764 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 60° ===================
17-03-18 06:03:14.764 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:14.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:03:14.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:14.794 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:03:14.794 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:03:14.794 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:03:15.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:03:15.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:03:15.114 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:03:15.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:15.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:03:15.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:03:15.284 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:15.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:15.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:15.414 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:03:15.414 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:03:15.414 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:03:15.544 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:03:15.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:16.824 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1912, R2=1990, Total=3902. Warn if over 250 bubbles per interval.
17-03-18 06:03:18.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:18.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:19.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:19.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:19.294 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.999021,
17-03-18 06:03:19.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:19.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:19.644 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:03:19.644 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:19.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:19.804 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:03:19.804 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:03:19.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:19.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:03:19.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:03:19.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:20.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:20.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:20.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:20.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:20.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:03:20.584 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:21.804 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:03:21.804 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:03:21.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:21.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:03:21.824 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:03:21.824 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:03:21.824 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:03:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1913, R2=1991, Total=3904. Warn if over 250 bubbles per interval.
17-03-18 06:03:21.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:03:21.974 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:03:21.974 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:03:22.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:22.044 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:03:22.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:03:22.144 -07 000000610 INF: =================== Cycle #145, Pumping Reagent CMS (4) ===================
17-03-18 06:03:22.144 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:22.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:22.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:03:22.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:03:22.174 -07 000000610 INF: =================== Cycle #145, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:03:22.304 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:03:22.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:23.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:23.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:24.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:24.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:24.264 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:03:24.264 -07 000000610 INF: =================== Cycle #145, Pumping Reagent CMS (4) ===================
17-03-18 06:03:24.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:24.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:03:24.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:03:24.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:24.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:03:24.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:03:24.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:24.654 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.99219,
17-03-18 06:03:24.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:24.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:25.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:25.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:25.204 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:03:25.204 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:26.424 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:03:26.424 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:03:26.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:26.444 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:03:26.444 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:03:26.444 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:03:26.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:03:26.614 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:03:26.614 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:03:26.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:26.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:03:26.684 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:03:26.784 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:26.784 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:26.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:26.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:03:26.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:03:26.824 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:03:26.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1913, R2=1991, Total=3904. Warn if over 250 bubbles per interval.
17-03-18 06:03:26.954 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:03:26.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:27.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:27.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:27.894 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:03:27.894 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:28.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:28.054 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:03:28.054 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:03:28.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:28.214 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:03:28.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:03:28.214 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:28.344 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:28.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:28.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:28.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:28.834 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:03:28.834 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:28.834 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:03:28.834 -07 000000581 INF: WaitCommand(10000) start
17-03-18 06:03:28.834 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:03:30.014 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.009895,
17-03-18 06:03:30.054 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:03:30.054 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 06:03:30.084 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:03:30.084 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:03:30.214 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:03:30.254 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:31.784 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:31.814 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:31.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1913, R2=1991, Total=3904. Warn if over 250 bubbles per interval.
17-03-18 06:03:32.234 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:32.264 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:32.264 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:03:32.264 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:03:32.264 -07 000000608 INF: ===================  ===================
17-03-18 06:03:35.374 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.009895,
17-03-18 06:03:36.824 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1913, R2=1991, Total=3904. Warn if over 250 bubbles per interval.
17-03-18 06:03:38.844 -07 000000581 INF: WaitCommand(10000) end
17-03-18 06:03:38.844 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:38.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:38.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:38.884 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:03:38.884 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:03:38.884 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:03:39.014 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:03:39.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:40.734 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.003063,
17-03-18 06:03:41.824 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:03:41.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1913, R2=1991, Total=3904. Warn if over 250 bubbles per interval.
17-03-18 06:03:45.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:45.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:45.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:45.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:46.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:46.094 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.975845,
17-03-18 06:03:46.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:46.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:46.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:46.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-18 06:03:46.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1920, R2=1998, Total=3918. Warn if over 250 bubbles per interval.
17-03-18 06:03:46.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:47.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:47.014 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:03:47.014 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:47.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:47.174 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:03:47.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:03:47.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:47.334 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:03:47.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:03:47.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:47.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:47.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:47.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:47.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:47.954 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:03:47.954 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:49.174 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:03:49.174 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:03:49.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:49.194 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:03:49.194 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:03:49.194 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:03:49.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:03:49.424 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:03:49.424 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:03:49.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:49.494 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:03:49.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:03:49.594 -07 000000610 INF: =================== Cycle #145, Pumping Reagent IMT (1) ===================
17-03-18 06:03:49.594 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:49.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:49.624 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:03:49.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:03:49.624 -07 000000610 INF: =================== Cycle #145, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:03:49.754 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:03:49.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:51.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:51.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:51.454 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.996267,
17-03-18 06:03:51.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:51.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:51.714 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:03:51.714 -07 000000610 INF: =================== Cycle #145, Pumping Reagent IMT (1) ===================
17-03-18 06:03:51.824 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:03:51.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1998, Total=3919. Warn if over 250 bubbles per interval.
17-03-18 06:03:51.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:51.874 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:03:51.874 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:03:52.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:52.034 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:03:52.034 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:03:52.034 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:52.164 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:52.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:52.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:52.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:52.654 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:03:52.654 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:53.874 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:03:53.874 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:03:53.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:53.894 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:03:53.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:03:53.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:03:54.124 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:03:54.144 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:03:54.144 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:03:54.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:03:54.214 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:03:54.214 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:03:54.314 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:54.314 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:03:54.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:54.344 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:03:54.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:03:54.344 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:03:54.474 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:03:54.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:03:55.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:55.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:55.414 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:03:55.414 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:03:55.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:55.574 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:03:55.574 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:03:55.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:03:55.734 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:03:55.734 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:03:55.734 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:03:55.864 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:03:55.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:56.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:03:56.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:03:56.354 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:03:56.354 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:56.354 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 65° ===================
17-03-18 06:03:56.354 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:03:56.354 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:03:56.354 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:03:56.364 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:03:56.364 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:03:56.364 -07 000000579 INF: FPGA: Recv TEC2EN 
17-03-18 06:03:56.374 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:03:56.374 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 65° ===================
17-03-18 06:03:56.374 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:03:56.374 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:03:56.814 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.015368,
17-03-18 06:03:56.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:03:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:01.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:02.174 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.026244,
17-03-18 06:04:06.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:07.534 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.026244,
17-03-18 06:04:11.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:12.894 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.014009,
17-03-18 06:04:16.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:18.254 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.997626,
17-03-18 06:04:21.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:23.614 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.986717,
17-03-18 06:04:26.384 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:04:26.384 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:04:26.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:04:26.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:04:26.514 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:04:26.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:04:26.514 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:04:26.644 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:04:26.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:04:26.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:27.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:04:27.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:04:27.254 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 06:04:27.254 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:04:27.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:04:27.414 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:04:27.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:04:27.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:04:27.574 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:04:27.574 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:04:27.574 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:04:27.704 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:04:27.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:04:28.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:04:28.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:04:28.194 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:04:28.194 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:04:28.194 -07 000000512 INF: WaitCommand(30000) start
17-03-18 06:04:28.194 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:04:28.194 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:04:28.974 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.996267,
17-03-18 06:04:29.414 -07 000000424 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:04:29.414 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-18 06:04:29.444 -07 000000424 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:04:29.444 -07 000000424 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:04:29.574 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:04:29.614 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:04:31.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:31.954 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 06:04:31.984 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:04:32.404 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 06:04:32.434 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:04:32.434 -07 000000424 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:04:32.434 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:04:32.434 -07 000000424 INF: ===================  ===================
17-03-18 06:04:34.334 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.964938,
17-03-18 06:04:36.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:39.694 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.948561,
17-03-18 06:04:41.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:41.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:45.054 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.994908,
17-03-18 06:04:46.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:46.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:50.414 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.037119,
17-03-18 06:04:51.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:51.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:55.774 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.024884,
17-03-18 06:04:56.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:04:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1921, R2=1999, Total=3920. Warn if over 250 bubbles per interval.
17-03-18 06:04:58.204 -07 000000512 INF: WaitCommand(30000) end
17-03-18 06:04:58.204 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 22° ===================
17-03-18 06:04:58.204 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:04:58.204 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:04:58.214 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:04:58.214 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:04:58.214 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:04:58.214 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 06:04:58.224 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:04:58.224 -07 000000610 INF: =================== Cycle #145, Flow Cell Temp 22° ===================
17-03-18 06:04:58.224 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:04:58.224 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:04:58.224 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:04:58.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:04:58.264 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:04:58.264 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:04:58.264 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:04:58.394 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:04:58.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:01.134 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.014009,
17-03-18 06:05:01.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:01.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:01.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 06:05:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:02.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:02.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:02.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:02.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:02.494 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:05:02.494 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:05:02.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:02.654 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:05:02.654 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:05:02.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:02.814 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:05:02.814 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:05:02.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:05:02.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:05:02.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:03.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:03.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:03.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:05:03.434 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:05:04.654 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:05:04.654 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:05:04.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:04.674 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:05:04.674 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:05:04.674 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:05:04.824 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:05:04.844 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:05:04.844 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:05:04.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:04.914 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:05:04.914 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:05:05.014 -07 000000610 INF: =================== Cycle #145, Pumping Reagent USM (2) ===================
17-03-18 06:05:05.014 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:05:05.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:05.044 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:05:05.044 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:05:05.044 -07 000000610 INF: =================== Cycle #145, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:05:05.174 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:05:05.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:06.494 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.001704,
17-03-18 06:05:06.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:06.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:06.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:07.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:07.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:07.134 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:05:07.134 -07 000000610 INF: =================== Cycle #145, Pumping Reagent USM (2) ===================
17-03-18 06:05:07.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:07.294 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:05:07.294 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:05:07.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:07.454 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:05:07.454 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:05:07.454 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:05:07.584 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:05:07.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:08.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:08.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:08.074 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:05:08.074 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:05:09.294 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:05:09.294 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:05:09.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:09.314 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:05:09.314 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:05:09.314 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:05:09.464 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:05:09.484 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:05:09.484 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:05:09.534 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:09.554 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:05:09.554 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:05:09.654 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:05:09.654 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:05:09.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:09.684 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:05:09.684 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:05:09.684 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:05:09.814 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:05:09.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:10.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:10.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:10.754 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:05:10.754 -07 000000610 INF: =================== Cycle #145, Pumping Reagent PR2 (3) ===================
17-03-18 06:05:10.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:10.914 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:05:10.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:05:11.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:05:11.074 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:05:11.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:05:11.074 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:05:11.204 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:05:11.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:11.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:11.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:11.694 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:05:11.694 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:05:11.694 -07 000000579 INF: WaitCommand(10000) start
17-03-18 06:05:11.694 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:05:11.694 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:05:12.314 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:12.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:12.314 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.993549,
17-03-18 06:05:12.914 -07 000000382 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:05:12.914 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-18 06:05:12.944 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:05:12.944 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:05:13.074 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:05:13.114 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:14.644 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:14.674 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:05:15.094 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 06:05:15.124 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:05:15.124 -07 000000382 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:05:15.124 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:05:15.124 -07 000000382 INF: ===================  ===================
17-03-18 06:05:16.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:17.674 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.004458,
17-03-18 06:05:21.704 -07 000000579 INF: WaitCommand(10000) end
17-03-18 06:05:21.704 -07 000000610 INF: =================== Cycle #145, Imaging ===================
17-03-18 06:05:21.704 -07 000000610 INF: Imaging Cycle 145: ScanTilesCommand Cycle 145 time start.
17-03-18 06:05:21.704 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:05:21.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:21.734 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:05:21.734 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:05:21.734 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:05:21.824 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:22.034 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:05:22.054 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:05:22.054 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:05:22.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:05:22.124 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:05:22.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:22.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:22.124 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:05:22.124 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:22.124 -07 000000606 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:05:22.124 -07 000000579 INF: FPGA: Recv EXLED1ON 
17-03-18 06:05:22.134 -07 000000606 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:05:22.134 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:05:22.134 -07 000000629 INF: FPGA: Recv EXLED1ADCR 23187
17-03-18 06:05:22.144 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:22.144 -07 000000606 INF: RedLED: Using Red data: Photodiode ADC 23187 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW
17-03-18 06:05:22.144 -07 000000606 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:05:22.144 -07 000000424 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:05:22.154 -07 000000606 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:22.154 -07 000000606 INF: RedLED: LED was on for 20 ms
17-03-18 06:05:22.154 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 06:05:22.154 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:05:22.154 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:22.154 -07 000000606 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:05:22.154 -07 000000629 INF: FPGA: Recv EXLED2ON 
17-03-18 06:05:22.164 -07 000000606 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:05:22.164 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:05:22.164 -07 000000447 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 06:05:22.174 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:22.174 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 06:05:22.174 -07 000000606 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:05:22.174 -07 000000382 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:05:22.184 -07 000000606 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:22.184 -07 000000606 INF: GreenLED: LED was on for 19 ms
17-03-18 06:05:22.184 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:05:22.184 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:05:22.184 -07 000000581 INF: FPGA: Recv EMCUR 
17-03-18 06:05:22.194 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:05:22.194 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:05:22.694 -07 000000579 INF: FPGA: Recv EMOUT
17-03-18 06:05:22.694 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:05:22.694 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:05:22.694 -07 000000581 INF: FPGA: Recv EMCUR 
17-03-18 06:05:22.704 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:22.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:22.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126728291516471. ------
17-03-18 06:05:22.704 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:22.704 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17845 mm
17-03-18 06:05:22.704 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:22.704 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:05:22.704 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 06:05:22.704 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38983, sync = True, waitForSettling = False)
17-03-18 06:05:22.704 -07 000000461 INF: Z Motor: Moving to -0.178453 mm, started at -0.126728 mm, distance = -51.72 um
17-03-18 06:05:22.704 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:22.714 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:05:22.724 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:22.724 -07 000000579 INF: FPGA: Recv YRDPOS 154381
17-03-18 06:05:22.734 -07 000000461 INF: FPGA: Xmit ZDACW 38983\n [Z Motor]
17-03-18 06:05:22.734 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:05:22.734 -07 000000424 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:22.734 -07 000000424 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:05:22.734 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:05:22.744 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:22.754 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:05:23.274 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:05:23.274 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:23.274 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 560 ms overall
17-03-18 06:05:23.274 -07 000000461 INF: FPGA: 'ZDACW 38983' command took 2 ms to send, 530 ms to get response, and 560 ms overall
17-03-18 06:05:23.274 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:23.274 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.003063,
17-03-18 06:05:23.274 -07 000000512 INF: FPGA: Recv ZDACR 38983
17-03-18 06:05:23.284 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:23.284 -07 000000461 INF: Z Motor: MoveAbsStepped took 570 ms (did NOT wait for settling yet))
17-03-18 06:05:24.434 -07 000000579 INF: FPGA: Recv YMVTO 122701 24779
17-03-18 06:05:24.434 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-18 06:05:24.434 -07 000000424 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:05:24.434 -07 000000424 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24779 steps (15.487 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:05:24.434 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.469 mm, average velocity = 9.083 mm/sec
17-03-18 06:05:26.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:27.284 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:27.284 -07 000000579 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:05:27.294 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:27.294 -07 000000424 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:27.324 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:27.324 -07 000000424 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:05:27.324 -07 000000424 INF: Y Motor: Moved to 59.9097 after 4615 ms
17-03-18 06:05:27.324 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178453 mm (DAC = 38983)
17-03-18 06:05:27.324 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.334 -07 000000579 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:05:27.334 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:05:27.334 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.334 -07 000000512 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:05:27.344 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.344 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.344 -07 000000424 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:05:27.354 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.354 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.354 -07 000000461 INF: FPGA: Recv ZSGSRD 37063
17-03-18 06:05:27.364 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.364 -07 000000424 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:05:27.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.374 -07 000000606 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:05:27.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.384 -07 000000382 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:05:27.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.394 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.394 -07 000000447 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:05:27.404 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.404 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.404 -07 000000579 INF: FPGA: Recv ZSGSRD 37072
17-03-18 06:05:27.414 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.414 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:27.414 -07 000000606 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:05:27.424 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.424 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:27.424 -07 000000424 INF: FPGA: Recv ZPIEZORD 33321
17-03-18 06:05:27.434 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.3 V.
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37069 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37063 (-177.5 uncal um), Max = 37074 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37069, posNoise = 5, negNoise = 6
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: After move to -0.178453, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: Settle wait time = 4618 ms, measure time = 103 ms (allowed 150 ms), total time = 4721 ms
17-03-18 06:05:27.434 -07 000000629 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:27.484 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 06:05:27.484 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:27.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:27.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:27.484 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:27.484 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:27.484 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:27.484 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:27.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:27.494 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:05:27.514 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:05:27.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:27.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:05:27.514 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:27.534 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:05:27.534 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:05:27.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:27.574 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:27.874 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:27.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:27.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:27.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2319251168, 0x0, 559484976) start.
17-03-18 06:05:27.924 -07 000000447 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:05:27.924 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:27.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 06:05:28.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2319251168, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:05:28.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:28.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:05:28.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:05:28.024 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:28.024 -07 000000579 INF: Image SNR check: start
17-03-18 06:05:28.024 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:28.034 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:28.034 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:28.034 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=126.91]
17-03-18 06:05:28.034 -07 000000579 INF: Autofocus start
17-03-18 06:05:28.034 -07 000000579 INF: MeasureProfile start
17-03-18 06:05:28.054 -07 000000579 INF: MeasureProfile done
17-03-18 06:05:28.054 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:05:28.054 -07 000000579 INF: Autofocus finished
17-03-18 06:05:28.234 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:28.234 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:05:28.234 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178462471894072. ----------
17-03-18 06:05:28.234 -07 000000610 INF: Cycle	145	Tile	1	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:28.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = True)
17-03-18 06:05:28.244 -07 000000610 INF: Z Motor: Moving to -0.171650 mm, started at -0.178462 mm, distance = 6.81 um
17-03-18 06:05:28.244 -07 000000610 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-18 06:05:28.244 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:05:28.254 -07 000000610 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:28.254 -07 000000581 INF: FPGA: Recv ZDACR 37497
17-03-18 06:05:28.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:28.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36013
17-03-18 06:05:28.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:28.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.424 -07 000000629 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:05:28.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.434 -07 000000461 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:05:28.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.444 -07 000000579 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:05:28.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.454 -07 000000447 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:05:28.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:05:28.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.474 -07 000000447 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:05:28.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.484 -07 000000579 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:05:28.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.494 -07 000000447 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:05:28.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:28.504 -07 000000579 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:05:28.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:28.514 -07 000000629 INF: FPGA: Recv ZPIEZORD 31873
17-03-18 06:05:28.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:28.524 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 06:05:28.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36010 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36005 (-170.7 uncal um), Max = 36014 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:05:28.524 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36010, posNoise = 4, negNoise = 5
17-03-18 06:05:28.524 -07 000000610 INF: Z Motor: After move to -0.171650, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:28.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:05:28.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:28.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:28.524 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:28.524 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:28.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:28.524 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:28.524 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:28.524 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:28.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:28.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:28.524 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:28.524 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:05:28.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:05:28.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:28.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:05:28.544 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:05:28.544 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:05:28.544 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:28.554 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:05:28.554 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:28.564 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:05:28.564 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 06:05:28.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37674 150\n [Camera]
17-03-18 06:05:28.644 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.004458,
17-03-18 06:05:28.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:29.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:29.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:29.224 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:29.224 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:29.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:29.224 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:29.344 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:29.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:05:29.344 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:29.344 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2338332552, 0x0, 391868352) start.
17-03-18 06:05:29.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37674 837
17-03-18 06:05:29.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:29.744 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2338332552, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:05:29.744 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:05:29.744 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:29.744 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:05:29.744 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:05:29.744 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:29.744 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:29.744 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:05:29.744 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:29.754 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 06:05:29.774 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:29.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:29.774 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:29.784 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:29.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:29.784 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:29.784 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:29.784 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:05:29.794 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:29.794 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 06:05:29.964 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:05:29.964 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:29.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37674 150' command took 2 ms to send, 1399 ms to get response, and 1404 ms overall
17-03-18 06:05:29.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:29.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171659231235947. ------
17-03-18 06:05:29.974 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17792 mm
17-03-18 06:05:29.974 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:29.974 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:29.974 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:29.984 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:05:29.984 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:29.984 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38867, sync = True, waitForSettling = False)
17-03-18 06:05:29.984 -07 000000382 INF: Z Motor: Moving to -0.177922 mm, started at -0.171659 mm, distance = -6.26 um
17-03-18 06:05:29.984 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:05:29.984 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:05:29.994 -07 000000382 INF: FPGA: Xmit ZDACW 38867\n [Z Motor]
17-03-18 06:05:29.994 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:05:30.004 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:30.004 -07 000000382 INF: FPGA: 'ZDACW 38867' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:05:30.004 -07 000000512 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:05:30.014 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:05:30.014 -07 000000424 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:30.014 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:30.014 -07 000000424 INF: Y Motor: Moving 1333 steps0
17-03-18 06:05:30.014 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:30.014 -07 000000512 INF: FPGA: Recv ZDACR 38867
17-03-18 06:05:30.024 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:30.024 -07 000000382 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:05:30.024 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:30.184 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:30.184 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:05:30.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:05:30.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:05:30.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:30.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:05:30.184 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:05:30.184 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:30.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:30.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:05:30.194 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:05:30.204 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 06:05:30.394 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:05:30.394 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:05:30.434 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:30.444 -07 000000502 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:05:30.454 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:30.454 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:30.454 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:05:30.454 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.833 mm, average velocity = 2.152 mm/sec
17-03-18 06:05:31.404 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:31.404 -07 000000467 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:05:31.414 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:31.414 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:31.444 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:31.444 -07 000000424 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:05:31.444 -07 000000424 INF: Y Motor: Moved to 60.7319 after 1461 ms (table move)
17-03-18 06:05:31.444 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177922 mm (DAC = 38867)
17-03-18 06:05:31.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.454 -07 000000437 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:05:31.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:05:31.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.454 -07 000000438 INF: FPGA: Recv ZSGSRD 36984
17-03-18 06:05:31.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:05:31.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.464 -07 000000467 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:05:31.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.474 -07 000000592 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:05:31.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.484 -07 000000502 INF: FPGA: Recv ZSGSRD 36981
17-03-18 06:05:31.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.494 -07 000000569 INF: FPGA: Recv ZSGSRD 36989
17-03-18 06:05:31.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.504 -07 000000592 INF: FPGA: Recv ZSGSRD 36993
17-03-18 06:05:31.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:05:31.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.524 -07 000000592 INF: FPGA: Recv ZSGSRD 36991
17-03-18 06:05:31.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.534 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:31.534 -07 000000579 INF: FPGA: Recv ZSGSRD 36981
17-03-18 06:05:31.544 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.544 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:31.544 -07 000000424 INF: FPGA: Recv ZPIEZORD 33188
17-03-18 06:05:31.554 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V.
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36986 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36984 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36981 (-177.0 uncal um), Max = 36993 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36986, posNoise = 7, negNoise = 5
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: After move to -0.177922, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: Settle wait time = 1467 ms, measure time = 101 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:05:31.554 -07 000000606 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:31.604 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:05:31.604 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:31.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:31.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:31.604 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:31.604 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:31.604 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:31.604 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:31.604 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:31.604 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:31.614 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:31.614 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:31.624 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:05:31.624 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:05:31.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:31.674 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:31.824 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:31.974 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:31.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:31.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:31.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2319251168, 0x0, 559484976) start.
17-03-18 06:05:32.014 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:32.014 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:32.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:05:32.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2319251168, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:05:32.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:32.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:05:32.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:05:32.114 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:32.114 -07 000000606 INF: Autofocus start
17-03-18 06:05:32.114 -07 000000606 INF: MeasureProfile start
17-03-18 06:05:32.124 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:32.124 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:05:32.124 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:32.124 -07 000000606 INF: MeasureProfile done
17-03-18 06:05:32.124 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:05:32.124 -07 000000606 INF: Autofocus finished
17-03-18 06:05:32.324 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:32.324 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:05:32.324 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177929262286306. ----------
17-03-18 06:05:32.334 -07 000000610 INF: Cycle	145	Tile	2	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:32.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-18 06:05:32.334 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.177929 mm, distance = 6.89 um
17-03-18 06:05:32.334 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-18 06:05:32.334 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:05:32.344 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:32.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:32.344 -07 000000438 INF: FPGA: Recv ZDACR 37364
17-03-18 06:05:32.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:32.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:05:32.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:32.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.514 -07 000000592 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:05:32.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.524 -07 000000424 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:05:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.534 -07 000000592 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:05:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.544 -07 000000424 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:05:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.554 -07 000000467 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:05:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.564 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:05:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.574 -07 000000467 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:05:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.584 -07 000000424 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:05:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:32.594 -07 000000592 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:05:32.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:32.604 -07 000000579 INF: FPGA: Recv ZPIEZORD 31714
17-03-18 06:05:32.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:32.614 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.3 V.
17-03-18 06:05:32.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35915 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:05:32.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 6, negNoise = 5
17-03-18 06:05:32.614 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:32.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:05:32.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:32.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:32.614 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:32.614 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:32.614 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:32.614 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:32.614 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:32.614 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:32.614 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:32.614 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:32.614 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:32.614 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:32.624 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:05:32.624 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:32.624 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:05:32.624 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:32.634 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:05:32.634 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:05:32.634 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:05:32.634 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:05:32.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37541 150\n [Camera]
17-03-18 06:05:32.844 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:33.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:33.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:33.294 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:33.294 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:33.294 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:05:33.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:33.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:33.294 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:33.294 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:33.294 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2373754816, 0x0, 418435064) start.
17-03-18 06:05:33.484 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37541 837
17-03-18 06:05:33.634 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:33.694 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:05:33.694 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:05:33.694 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:33.814 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2373754816, 0x0, 418435064) end. Duration was 514 ms.
17-03-18 06:05:33.814 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 06:05:33.814 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:33.814 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:05:33.814 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-18 06:05:33.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:05:33.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 06:05:33.854 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:33.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:33.854 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:33.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:33.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:33.854 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:33.864 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:33.864 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:05:33.864 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:33.864 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:05:34.004 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.019446,
17-03-18 06:05:34.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:05:34.044 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:34.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37541 150' command took 2 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-18 06:05:34.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:34.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171055355294621. ------
17-03-18 06:05:34.054 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17780 mm
17-03-18 06:05:34.054 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:34.054 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:34.054 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:34.054 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:05:34.054 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38840, sync = True, waitForSettling = False)
17-03-18 06:05:34.054 -07 000000585 INF: Z Motor: Moving to -0.177798 mm, started at -0.171055 mm, distance = -6.74 um
17-03-18 06:05:34.054 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:05:34.064 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:34.064 -07 000000585 INF: FPGA: Xmit ZDACW 38840\n [Z Motor]
17-03-18 06:05:34.064 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:05:34.074 -07 000000585 INF: FPGA: 'ZDACW 38840' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:05:34.074 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:34.074 -07 000000581 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:05:34.084 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:05:34.084 -07 000000461 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:34.084 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:34.084 -07 000000461 INF: Y Motor: Moving 1345 steps-22
17-03-18 06:05:34.084 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:34.094 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:34.094 -07 000000606 INF: FPGA: Recv ZDACR 38840
17-03-18 06:05:34.104 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:34.104 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:05:34.104 -07 000000585 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:05:34.254 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:05:34.254 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:05:34.254 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:34.254 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:05:34.254 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:05:34.254 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:34.254 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:34.254 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:34.254 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:05:34.264 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:05:34.284 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:34.284 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 06:05:34.474 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:05:34.474 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:05:34.524 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:34.534 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:05:34.534 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:05:34.534 -07 000000461 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:34.534 -07 000000461 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:05:34.534 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:05:35.484 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:35.484 -07 000000502 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:05:35.494 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:35.494 -07 000000461 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:35.524 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:35.524 -07 000000461 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:05:35.524 -07 000000461 INF: Y Motor: Moved to 61.5625 after 1467 ms (table move)
17-03-18 06:05:35.524 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177798 mm (DAC = 38840)
17-03-18 06:05:35.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.524 -07 000000382 INF: FPGA: Recv ZSGSRD 36966
17-03-18 06:05:35.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:05:35.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.534 -07 000000585 INF: FPGA: Recv ZSGSRD 36964
17-03-18 06:05:35.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:35.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.544 -07 000000606 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:05:35.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.554 -07 000000438 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:05:35.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.564 -07 000000629 INF: FPGA: Recv ZSGSRD 36964
17-03-18 06:05:35.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.574 -07 000000569 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:05:35.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.584 -07 000000502 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:05:35.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.594 -07 000000585 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:05:35.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.604 -07 000000629 INF: FPGA: Recv ZSGSRD 36957
17-03-18 06:05:35.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:35.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:05:35.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.624 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:35.624 -07 000000447 INF: FPGA: Recv ZPIEZORD 33182
17-03-18 06:05:35.634 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36967 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36957 (-176.8 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 6, negNoise = 10
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: After move to -0.177798, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: Settle wait time = 1470 ms, measure time = 104 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:05:35.634 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:35.684 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:05:35.684 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:35.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:35.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:35.684 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:35.684 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:35.684 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:35.684 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:35.694 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:05:35.694 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:35.694 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:05:35.694 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:35.704 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:05:35.704 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:05:35.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:35.754 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:36.054 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:36.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:36.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:36.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:05:36.084 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:36.094 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:36.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 06:05:36.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:05:36.164 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:36.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:05:36.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:05:36.194 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:36.194 -07 000000629 INF: Autofocus start
17-03-18 06:05:36.194 -07 000000629 INF: MeasureProfile start
17-03-18 06:05:36.194 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:36.204 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:36.204 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:36.214 -07 000000629 INF: MeasureProfile done
17-03-18 06:05:36.214 -07 000000629 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:05:36.214 -07 000000629 INF: Autofocus finished
17-03-18 06:05:36.404 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:36.404 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 06:05:36.404 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177807202255612. ----------
17-03-18 06:05:36.404 -07 000000610 INF: Cycle	145	Tile	3	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:36.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37372, sync = True, waitForSettling = True)
17-03-18 06:05:36.414 -07 000000610 INF: Z Motor: Moving to -0.171078 mm, started at -0.177807 mm, distance = 6.73 um
17-03-18 06:05:36.414 -07 000000610 INF: FPGA: Xmit ZDACW 37372\n [Z Motor]
17-03-18 06:05:36.414 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:05:36.424 -07 000000610 INF: FPGA: 'ZDACW 37372' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:36.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:36.424 -07 000000606 INF: FPGA: Recv ZDACR 37372
17-03-18 06:05:36.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:36.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.584 -07 000000467 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:05:36.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:36.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.594 -07 000000581 INF: FPGA: Recv ZSGSRD 35923
17-03-18 06:05:36.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.604 -07 000000629 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:05:36.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.614 -07 000000502 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:05:36.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.624 -07 000000437 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:05:36.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:36.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.634 -07 000000629 INF: FPGA: Recv ZSGSRD 35923
17-03-18 06:05:36.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.644 -07 000000437 INF: FPGA: Recv ZSGSRD 35924
17-03-18 06:05:36.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.654 -07 000000629 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:05:36.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.664 -07 000000437 INF: FPGA: Recv ZSGSRD 35925
17-03-18 06:05:36.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:36.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35920
17-03-18 06:05:36.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:36.684 -07 000000502 INF: FPGA: Recv ZPIEZORD 31752
17-03-18 06:05:36.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:36.694 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 06:05:36.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35922 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:05:36.694 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35922, posNoise = 3, negNoise = 6
17-03-18 06:05:36.694 -07 000000610 INF: Z Motor: After move to -0.171078, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:36.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:05:36.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:36.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:36.694 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:36.694 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:36.694 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:36.694 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:36.694 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:36.694 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:36.694 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:36.694 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:36.694 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:36.694 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:36.704 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:36.704 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:36.704 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:05:36.704 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:36.714 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:05:36.714 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:05:36.714 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:05:36.714 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:05:36.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37549 150\n [Camera]
17-03-18 06:05:36.824 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:36.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:37.374 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:37.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:37.374 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:37.374 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:37.374 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:05:37.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:37.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:37.374 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:37.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:37.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:05:37.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37549 837
17-03-18 06:05:37.714 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:37.764 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:05:37.764 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:05:37.764 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:37.764 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:05:37.764 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:05:37.764 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:37.764 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:37.764 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:05:37.764 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:37.774 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:05:37.934 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:37.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:37.934 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:37.934 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:37.934 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:05:37.934 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:37.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:37.934 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:37.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:37.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:05:38.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1398
17-03-18 06:05:38.124 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:38.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37549 150' command took 2 ms to send, 1394 ms to get response, and 1405 ms overall
17-03-18 06:05:38.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:38.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171093900567472. ------
17-03-18 06:05:38.134 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:38.134 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17738 mm
17-03-18 06:05:38.134 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:38.134 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:38.134 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38749, sync = True, waitForSettling = False)
17-03-18 06:05:38.134 -07 000000461 INF: Z Motor: Moving to -0.177382 mm, started at -0.171094 mm, distance = -6.29 um
17-03-18 06:05:38.134 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:05:38.134 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:05:38.144 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:38.144 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:38.144 -07 000000437 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:05:38.154 -07 000000461 INF: FPGA: Xmit ZDACW 38749\n [Z Motor]
17-03-18 06:05:38.154 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:05:38.154 -07 000000502 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:38.154 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:05:38.154 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:38.154 -07 000000502 INF: Y Motor: Moving 1343 steps-21
17-03-18 06:05:38.164 -07 000000461 INF: FPGA: 'ZDACW 38749' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:05:38.164 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:38.174 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:38.184 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:38.184 -07 000000592 INF: FPGA: Recv ZDACR 38749
17-03-18 06:05:38.194 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:05:38.194 -07 000000461 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:05:38.334 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:05:38.334 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:05:38.334 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:38.334 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:05:38.334 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:05:38.334 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:38.344 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:38.344 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:05:38.344 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:05:38.344 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:05:38.364 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:38.364 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:05:38.554 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:05:38.554 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 373 ms to get response, and 397 ms overall
17-03-18 06:05:38.604 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:38.604 -07 000000569 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:05:38.614 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:05:38.614 -07 000000502 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:38.614 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:05:38.614 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:05:39.364 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.005817,
17-03-18 06:05:39.564 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:39.564 -07 000000447 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:05:39.574 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:39.574 -07 000000502 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:39.604 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:39.604 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:05:39.604 -07 000000502 INF: Y Motor: Moved to 62.3945 after 1468 ms (table move)
17-03-18 06:05:39.614 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177382 mm (DAC = 38749)
17-03-18 06:05:39.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.614 -07 000000581 INF: FPGA: Recv ZSGSRD 36904
17-03-18 06:05:39.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.624 -07 000000461 INF: FPGA: Recv ZSGSRD 36897
17-03-18 06:05:39.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.634 -07 000000437 INF: FPGA: Recv ZSGSRD 36897
17-03-18 06:05:39.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.644 -07 000000467 INF: FPGA: Recv ZSGSRD 36890
17-03-18 06:05:39.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.654 -07 000000569 INF: FPGA: Recv ZSGSRD 36900
17-03-18 06:05:39.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.664 -07 000000437 INF: FPGA: Recv ZSGSRD 36907
17-03-18 06:05:39.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.674 -07 000000467 INF: FPGA: Recv ZSGSRD 36901
17-03-18 06:05:39.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.684 -07 000000447 INF: FPGA: Recv ZSGSRD 36906
17-03-18 06:05:39.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.694 -07 000000447 INF: FPGA: Recv ZSGSRD 36896
17-03-18 06:05:39.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:39.704 -07 000000447 INF: FPGA: Recv ZSGSRD 36897
17-03-18 06:05:39.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.714 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:39.714 -07 000000447 INF: FPGA: Recv ZPIEZORD 33096
17-03-18 06:05:39.724 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.4 V.
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36900 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36890 (-176.4 uncal um), Max = 36907 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36900, posNoise = 7, negNoise = 10
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: After move to -0.177382, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: Settle wait time = 1475 ms, measure time = 111 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:05:39.724 -07 000000606 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:39.764 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:05:39.764 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:39.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:39.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:39.764 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:39.764 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:39.764 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:39.764 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:39.764 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:39.764 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:39.774 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:39.774 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:39.774 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:05:39.774 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:05:39.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:39.824 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:40.124 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:40.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:40.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:40.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:05:40.164 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:40.164 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:40.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:05:40.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:05:40.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:40.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:05:40.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:05:40.264 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:40.264 -07 000000467 INF: Autofocus start
17-03-18 06:05:40.264 -07 000000467 INF: MeasureProfile start
17-03-18 06:05:40.264 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:40.274 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:05:40.274 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:40.284 -07 000000467 INF: MeasureProfile done
17-03-18 06:05:40.284 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:05:40.284 -07 000000467 INF: Autofocus finished
17-03-18 06:05:40.474 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:40.474 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:05:40.474 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177376780042114. ----------
17-03-18 06:05:40.474 -07 000000610 INF: Cycle	145	Tile	4	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:40.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37246, sync = True, waitForSettling = True)
17-03-18 06:05:40.484 -07 000000610 INF: Z Motor: Moving to -0.170501 mm, started at -0.177377 mm, distance = 6.88 um
17-03-18 06:05:40.484 -07 000000610 INF: FPGA: Xmit ZDACW 37246\n [Z Motor]
17-03-18 06:05:40.484 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:05:40.494 -07 000000610 INF: FPGA: 'ZDACW 37246' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:40.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:40.494 -07 000000592 INF: FPGA: Recv ZDACR 37246
17-03-18 06:05:40.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:40.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.654 -07 000000629 INF: FPGA: Recv ZSGSRD 35830
17-03-18 06:05:40.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:40.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.664 -07 000000592 INF: FPGA: Recv ZSGSRD 35828
17-03-18 06:05:40.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.674 -07 000000629 INF: FPGA: Recv ZSGSRD 35836
17-03-18 06:05:40.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.684 -07 000000626 INF: FPGA: Recv ZSGSRD 35832
17-03-18 06:05:40.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35832
17-03-18 06:05:40.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.704 -07 000000606 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:05:40.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.714 -07 000000569 INF: FPGA: Recv ZSGSRD 35834
17-03-18 06:05:40.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.724 -07 000000606 INF: FPGA: Recv ZSGSRD 35829
17-03-18 06:05:40.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35832
17-03-18 06:05:40.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:40.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35830
17-03-18 06:05:40.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:40.754 -07 000000626 INF: FPGA: Recv ZPIEZORD 31691
17-03-18 06:05:40.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:40.764 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.1 V.
17-03-18 06:05:40.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35831 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35836 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:05:40.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35831, posNoise = 5, negNoise = 3
17-03-18 06:05:40.764 -07 000000610 INF: Z Motor: After move to -0.170501, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:40.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:05:40.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:40.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:40.764 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:40.764 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:40.764 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:40.764 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:40.764 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:40.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:40.764 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:40.764 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:40.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:40.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:40.774 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:05:40.774 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:40.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:05:40.774 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:40.784 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:05:40.784 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:05:40.784 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:05:40.784 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:05:40.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37423 150\n [Camera]
17-03-18 06:05:40.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:41.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:41.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:41.444 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:41.444 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:41.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) start.
17-03-18 06:05:41.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:41.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:41.444 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:41.574 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:41.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:05:41.634 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37423 837
17-03-18 06:05:41.784 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:41.824 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:41.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:41.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:05:41.844 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:05:41.844 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:41.844 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:41.844 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:05:41.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:05:41.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:05:41.954 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:41.954 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:05:41.964 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 06:05:42.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:42.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:42.004 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:42.004 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:42.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:42.004 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:42.004 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:42.004 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 06:05:42.014 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:42.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:05:42.194 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:05:42.194 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:42.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37423 150' command took 2 ms to send, 1392 ms to get response, and 1404 ms overall
17-03-18 06:05:42.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:42.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170509297262572. ------
17-03-18 06:05:42.204 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:42.204 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17710 mm
17-03-18 06:05:42.204 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:42.204 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:05:42.204 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:05:42.204 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38688, sync = True, waitForSettling = False)
17-03-18 06:05:42.204 -07 000000592 INF: Z Motor: Moving to -0.177102 mm, started at -0.170509 mm, distance = -6.59 um
17-03-18 06:05:42.204 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:42.214 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:42.214 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:42.214 -07 000000467 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:05:42.224 -07 000000592 INF: FPGA: Xmit ZDACW 38688\n [Z Motor]
17-03-18 06:05:42.224 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:05:42.224 -07 000000626 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:42.224 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:42.224 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:05:42.224 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:05:42.234 -07 000000592 INF: FPGA: 'ZDACW 38688' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:05:42.234 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:42.244 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:42.254 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:42.254 -07 000000606 INF: FPGA: Recv ZDACR 38688
17-03-18 06:05:42.264 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:05:42.264 -07 000000592 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:05:42.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:05:42.404 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:05:42.404 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:42.404 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:42.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:05:42.404 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:05:42.404 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:42.414 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:42.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:05:42.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:05:42.434 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:42.434 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:05:42.614 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:05:42.614 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 06:05:42.664 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:42.674 -07 000000629 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:05:42.674 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:05:42.674 -07 000000626 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:42.674 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:05:42.674 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:05:43.624 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:43.624 -07 000000447 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:05:43.634 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:43.634 -07 000000626 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:43.664 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:43.664 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:05:43.664 -07 000000626 INF: Y Motor: Moved to 63.2222 after 1458 ms (table move)
17-03-18 06:05:43.664 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177102 mm (DAC = 38688)
17-03-18 06:05:43.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.664 -07 000000626 INF: FPGA: Recv ZSGSRD 36865
17-03-18 06:05:43.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:05:43.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.674 -07 000000626 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.684 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.684 -07 000000447 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.694 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.694 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.694 -07 000000447 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.704 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.704 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.704 -07 000000447 INF: FPGA: Recv ZSGSRD 36870
17-03-18 06:05:43.714 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.714 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.714 -07 000000592 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.724 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.724 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.724 -07 000000592 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.734 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.734 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.734 -07 000000592 INF: FPGA: Recv ZSGSRD 36854
17-03-18 06:05:43.744 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.744 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.744 -07 000000592 INF: FPGA: Recv ZSGSRD 36860
17-03-18 06:05:43.754 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.754 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:43.754 -07 000000592 INF: FPGA: Recv ZSGSRD 36864
17-03-18 06:05:43.764 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.764 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:43.764 -07 000000382 INF: FPGA: Recv ZPIEZORD 33056
17-03-18 06:05:43.774 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.4 V.
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36861 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36854 (-176.2 uncal um), Max = 36870 (-176.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36861, posNoise = 9, negNoise = 7
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: After move to -0.177102, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:05:43.774 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:43.824 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 06:05:43.824 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:43.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:43.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:43.824 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:43.824 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:43.824 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:43.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:43.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:05:43.824 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:43.834 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:43.834 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:43.834 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:05:43.834 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:05:43.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:43.884 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:44.184 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:44.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:44.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:44.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) start.
17-03-18 06:05:44.224 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:44.224 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:44.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:05:44.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:05:44.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:44.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:05:44.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:05:44.324 -07 000000461 INF: Autofocus start
17-03-18 06:05:44.324 -07 000000461 INF: MeasureProfile start
17-03-18 06:05:44.324 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:44.324 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:44.334 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:05:44.334 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:44.334 -07 000000461 INF: MeasureProfile done
17-03-18 06:05:44.334 -07 000000461 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:05:44.334 -07 000000461 INF: Autofocus finished
17-03-18 06:05:44.534 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:44.534 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:05:44.534 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.177126235768586. ----------
17-03-18 06:05:44.534 -07 000000610 INF: Cycle	145	Tile	5	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:44.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37168, sync = True, waitForSettling = True)
17-03-18 06:05:44.544 -07 000000610 INF: Z Motor: Moving to -0.170144 mm, started at -0.177126 mm, distance = 6.98 um
17-03-18 06:05:44.544 -07 000000610 INF: FPGA: Xmit ZDACW 37168\n [Z Motor]
17-03-18 06:05:44.544 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:05:44.554 -07 000000610 INF: FPGA: 'ZDACW 37168' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:44.554 -07 000000569 INF: FPGA: Recv ZDACR 37168
17-03-18 06:05:44.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.724 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.99219,
17-03-18 06:05:44.724 -07 000000467 INF: FPGA: Recv ZSGSRD 35770
17-03-18 06:05:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35778
17-03-18 06:05:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.754 -07 000000626 INF: FPGA: Recv ZSGSRD 35774
17-03-18 06:05:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:44.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.764 -07 000000438 INF: FPGA: Recv ZSGSRD 35776
17-03-18 06:05:44.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.784 -07 000000629 INF: FPGA: Recv ZSGSRD 35779
17-03-18 06:05:44.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.804 -07 000000467 INF: FPGA: Recv ZSGSRD 35775
17-03-18 06:05:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.814 -07 000000585 INF: FPGA: Recv ZSGSRD 35780
17-03-18 06:05:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:44.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.834 -07 000000438 INF: FPGA: Recv ZSGSRD 35772
17-03-18 06:05:44.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:44.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.844 -07 000000579 INF: FPGA: Recv ZSGSRD 35776
17-03-18 06:05:44.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:44.854 -07 000000438 INF: FPGA: Recv ZSGSRD 35779
17-03-18 06:05:44.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:44.864 -07 000000626 INF: FPGA: Recv ZPIEZORD 31626
17-03-18 06:05:44.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:44.874 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.2 V.
17-03-18 06:05:44.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35776 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35770 (-169.2 uncal um), Max = 35780 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:05:44.874 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35776, posNoise = 4, negNoise = 6
17-03-18 06:05:44.874 -07 000000610 INF: Z Motor: After move to -0.170144, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:44.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-18 06:05:44.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:44.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:44.874 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:44.874 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:44.874 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:44.874 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:44.874 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:44.874 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:44.874 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:05:44.874 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:44.874 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:44.874 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:44.884 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:05:44.884 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:44.884 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:05:44.884 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:44.894 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:05:44.894 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:05:44.894 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:05:44.894 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:05:44.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37345 150\n [Camera]
17-03-18 06:05:45.094 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:45.554 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:45.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:45.554 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:45.554 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:45.554 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2328972648, 0x0, 391868352) start.
17-03-18 06:05:45.554 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:45.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:45.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:45.684 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:45.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:05:45.744 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37345 837
17-03-18 06:05:45.894 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:45.954 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2328972648, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:05:45.954 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:05:45.954 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:45.954 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:45.954 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:05:46.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:05:46.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:05:46.084 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:46.084 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:05:46.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 06:05:46.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:46.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:46.114 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:46.114 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:46.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:46.114 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:46.114 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:05:46.114 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:46.114 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:46.114 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2364394912, 0x0, 418435064) start.
17-03-18 06:05:46.304 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:05:46.304 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:46.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37345 150' command took 2 ms to send, 1392 ms to get response, and 1404 ms overall
17-03-18 06:05:46.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:46.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.170155965594775. ------
17-03-18 06:05:46.304 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:46.304 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17646 mm
17-03-18 06:05:46.304 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:46.314 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:46.314 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:05:46.314 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:46.314 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:05:46.314 -07 000000629 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 06:05:46.314 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38548, sync = True, waitForSettling = False)
17-03-18 06:05:46.314 -07 000000579 INF: Z Motor: Moving to -0.176461 mm, started at -0.170156 mm, distance = -6.31 um
17-03-18 06:05:46.324 -07 000000579 INF: FPGA: Xmit ZDACW 38548\n [Z Motor]
17-03-18 06:05:46.324 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:05:46.334 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:46.334 -07 000000579 INF: FPGA: 'ZDACW 38548' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:05:46.334 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:05:46.344 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:05:46.344 -07 000000629 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:46.344 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:46.344 -07 000000606 INF: FPGA: Recv ZDACR 38548
17-03-18 06:05:46.344 -07 000000629 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:46.344 -07 000000629 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:05:46.354 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:05:46.354 -07 000000579 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:05:46.354 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:46.514 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:46.514 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:05:46.514 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:05:46.514 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:05:46.514 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:46.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2364394912, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:05:46.524 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:05:46.524 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:46.524 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:46.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:05:46.524 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:46.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:05:46.724 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:05:46.724 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:05:46.774 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:46.784 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:05:46.784 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:05:46.784 -07 000000629 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:46.784 -07 000000629 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:05:46.784 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.183 mm/sec
17-03-18 06:05:46.824 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:46.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:47.734 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:47.734 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:05:47.744 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.744 -07 000000629 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:47.764 -07 000000629 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:47.774 -07 000000629 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:05:47.774 -07 000000629 INF: Y Motor: Moved to 64.0557 after 1455 ms (table move)
17-03-18 06:05:47.774 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176461 mm (DAC = 38548)
17-03-18 06:05:47.774 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.774 -07 000000606 INF: FPGA: Recv ZSGSRD 36758
17-03-18 06:05:47.784 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:47.784 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.784 -07 000000629 INF: FPGA: Recv ZSGSRD 36761
17-03-18 06:05:47.794 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.794 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.794 -07 000000606 INF: FPGA: Recv ZSGSRD 36754
17-03-18 06:05:47.804 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.804 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.804 -07 000000626 INF: FPGA: Recv ZSGSRD 36752
17-03-18 06:05:47.814 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.814 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36755
17-03-18 06:05:47.824 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.824 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.824 -07 000000626 INF: FPGA: Recv ZSGSRD 36759
17-03-18 06:05:47.834 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.834 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36764
17-03-18 06:05:47.844 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.844 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.844 -07 000000629 INF: FPGA: Recv ZSGSRD 36756
17-03-18 06:05:47.854 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.854 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.854 -07 000000569 INF: FPGA: Recv ZSGSRD 36763
17-03-18 06:05:47.864 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.864 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:47.864 -07 000000629 INF: FPGA: Recv ZSGSRD 36761
17-03-18 06:05:47.874 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.874 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:47.874 -07 000000569 INF: FPGA: Recv ZPIEZORD 32929
17-03-18 06:05:47.884 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.5 V.
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36758 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36758 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36752 (-175.5 uncal um), Max = 36764 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36758, posNoise = 6, negNoise = 6
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: After move to -0.176461, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:05:47.884 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:47.934 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:05:47.934 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:47.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:47.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:47.934 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:47.934 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:47.934 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:47.934 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:47.934 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:47.934 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:47.944 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:47.944 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:47.954 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:05:47.954 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:05:47.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:47.994 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:48.294 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:48.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:48.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:48.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) start.
17-03-18 06:05:48.334 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:48.334 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:48.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:05:48.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:05:48.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:48.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:05:48.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:05:48.534 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:48.534 -07 000000569 INF: Autofocus start
17-03-18 06:05:48.534 -07 000000569 INF: MeasureProfile start
17-03-18 06:05:48.534 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:48.544 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:48.544 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:48.544 -07 000000569 INF: MeasureProfile done
17-03-18 06:05:48.544 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:05:48.544 -07 000000569 INF: Autofocus finished
17-03-18 06:05:48.744 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:48.744 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:05:48.744 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176464541917984. ----------
17-03-18 06:05:48.744 -07 000000610 INF: Cycle	145	Tile	6	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:48.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37045, sync = True, waitForSettling = True)
17-03-18 06:05:48.754 -07 000000610 INF: Z Motor: Moving to -0.169581 mm, started at -0.176465 mm, distance = 6.88 um
17-03-18 06:05:48.754 -07 000000610 INF: FPGA: Xmit ZDACW 37045\n [Z Motor]
17-03-18 06:05:48.754 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:05:48.764 -07 000000610 INF: FPGA: 'ZDACW 37045' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:48.764 -07 000000424 INF: FPGA: Recv ZDACR 37045
17-03-18 06:05:48.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.924 -07 000000438 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:05:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:05:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.944 -07 000000569 INF: FPGA: Recv ZSGSRD 35681
17-03-18 06:05:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.954 -07 000000629 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:05:48.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:05:48.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.974 -07 000000626 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:05:48.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.984 -07 000000569 INF: FPGA: Recv ZSGSRD 35693
17-03-18 06:05:48.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:48.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:48.994 -07 000000579 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:05:49.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:49.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:49.004 -07 000000626 INF: FPGA: Recv ZSGSRD 35686
17-03-18 06:05:49.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:49.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:49.014 -07 000000579 INF: FPGA: Recv ZSGSRD 35687
17-03-18 06:05:49.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:49.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:49.024 -07 000000569 INF: FPGA: Recv ZPIEZORD 31503
17-03-18 06:05:49.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:49.034 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.2 V.
17-03-18 06:05:49.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35688 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35688 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35681 (-168.7 uncal um), Max = 35693 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:05:49.034 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35688, posNoise = 5, negNoise = 7
17-03-18 06:05:49.034 -07 000000610 INF: Z Motor: After move to -0.169581, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:49.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:05:49.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:49.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:49.034 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:49.034 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:49.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:49.034 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:49.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:49.034 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:49.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:05:49.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:49.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:05:49.034 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:49.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:49.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:49.034 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:05:49.034 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:49.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:05:49.044 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:05:49.054 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:05:49.054 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:05:49.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37222 150\n [Camera]
17-03-18 06:05:49.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:49.704 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:49.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:49.704 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:49.704 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:49.704 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:05:49.714 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:49.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:49.714 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:49.714 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:49.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:05:49.894 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37222 837
17-03-18 06:05:50.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:50.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:05:50.084 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:05:50.084 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:50.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:05:50.084 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:05:50.084 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:50.094 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:05:50.094 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:05:50.094 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:05:50.104 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:05:50.154 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.004458,
17-03-18 06:05:50.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:50.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:50.264 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:50.384 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:50.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:50.384 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:50.384 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:50.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:05:50.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:50.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:05:50.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:05:50.454 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:50.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37222 150' command took 2 ms to send, 1398 ms to get response, and 1403 ms overall
17-03-18 06:05:50.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:50.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.1695906349263. ------
17-03-18 06:05:50.464 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:50.464 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17599 mm
17-03-18 06:05:50.464 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:50.464 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:05:50.464 -07 000000579 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:05:50.464 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38445, sync = True, waitForSettling = False)
17-03-18 06:05:50.464 -07 000000626 INF: Z Motor: Moving to -0.175990 mm, started at -0.169591 mm, distance = -6.40 um
17-03-18 06:05:50.464 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:50.474 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:05:50.474 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:50.474 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:05:50.484 -07 000000626 INF: FPGA: Xmit ZDACW 38445\n [Z Motor]
17-03-18 06:05:50.484 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:05:50.484 -07 000000579 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:50.484 -07 000000579 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:50.484 -07 000000579 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:05:50.484 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:05:50.494 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:50.494 -07 000000626 INF: FPGA: 'ZDACW 38445' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:05:50.504 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:50.514 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:50.514 -07 000000606 INF: FPGA: Recv ZDACR 38445
17-03-18 06:05:50.524 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:05:50.524 -07 000000626 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:05:50.694 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:50.694 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:05:50.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:05:50.784 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:05:50.784 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:50.784 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:05:50.784 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:05:50.784 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:50.784 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:50.784 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:50.784 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 06:05:50.794 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:05:50.884 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:05:50.884 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:05:50.934 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:50.934 -07 000000626 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:05:50.944 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:50.944 -07 000000579 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:50.944 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:05:50.944 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.092 mm/sec
17-03-18 06:05:51.824 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:51.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:51.894 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:51.894 -07 000000626 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:05:51.904 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:51.904 -07 000000579 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:51.934 -07 000000579 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:51.934 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:05:51.934 -07 000000579 INF: Y Motor: Moved to 64.8774 after 1465 ms (table move)
17-03-18 06:05:51.934 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175990 mm (DAC = 38445)
17-03-18 06:05:51.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.934 -07 000000626 INF: FPGA: Recv ZSGSRD 36682
17-03-18 06:05:51.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:05:51.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.944 -07 000000606 INF: FPGA: Recv ZSGSRD 36688
17-03-18 06:05:51.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:51.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.954 -07 000000626 INF: FPGA: Recv ZSGSRD 36687
17-03-18 06:05:51.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:51.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.964 -07 000000606 INF: FPGA: Recv ZSGSRD 36686
17-03-18 06:05:51.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:51.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.974 -07 000000626 INF: FPGA: Recv ZSGSRD 36682
17-03-18 06:05:51.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:51.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.984 -07 000000606 INF: FPGA: Recv ZSGSRD 36686
17-03-18 06:05:51.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:51.994 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:51.994 -07 000000626 INF: FPGA: Recv ZSGSRD 36690
17-03-18 06:05:52.004 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:52.004 -07 000000569 INF: FPGA: Recv ZSGSRD 36689
17-03-18 06:05:52.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.014 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:52.014 -07 000000438 INF: FPGA: Recv ZSGSRD 36682
17-03-18 06:05:52.024 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.024 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:52.024 -07 000000626 INF: FPGA: Recv ZSGSRD 36687
17-03-18 06:05:52.034 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.034 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:52.034 -07 000000569 INF: FPGA: Recv ZPIEZORD 32822
17-03-18 06:05:52.044 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.5 V.
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36686 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36682 (-175.1 uncal um), Max = 36690 (-175.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36686, posNoise = 4, negNoise = 4
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: After move to -0.175990, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:05:52.044 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:52.094 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:05:52.094 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:52.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:52.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:52.094 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:52.094 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:52.094 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:52.094 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:52.094 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:52.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:52.104 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:52.104 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:52.104 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:05:52.104 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:05:52.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:52.154 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:52.454 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:52.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:52.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:52.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) start.
17-03-18 06:05:52.494 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:52.494 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:52.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:05:52.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:05:52.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:52.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:05:52.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:05:52.594 -07 000000424 INF: Autofocus start
17-03-18 06:05:52.594 -07 000000424 INF: MeasureProfile start
17-03-18 06:05:52.594 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:52.594 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:52.604 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:05:52.604 -07 000000424 INF: MeasureProfile done
17-03-18 06:05:52.604 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:05:52.604 -07 000000424 INF: Autofocus finished
17-03-18 06:05:52.624 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:52.824 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:52.824 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:05:52.824 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.176001998643777. ----------
17-03-18 06:05:52.824 -07 000000610 INF: Cycle	145	Tile	7	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:52.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36942, sync = True, waitForSettling = True)
17-03-18 06:05:52.834 -07 000000610 INF: Z Motor: Moving to -0.169110 mm, started at -0.176002 mm, distance = 6.89 um
17-03-18 06:05:52.834 -07 000000610 INF: FPGA: Xmit ZDACW 36942\n [Z Motor]
17-03-18 06:05:52.834 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:05:52.844 -07 000000610 INF: FPGA: 'ZDACW 36942' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:52.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:52.844 -07 000000626 INF: FPGA: Recv ZDACR 36942
17-03-18 06:05:52.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:52.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.004 -07 000000569 INF: FPGA: Recv ZSGSRD 35616
17-03-18 06:05:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.014 -07 000000437 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:05:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.024 -07 000000606 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:05:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.034 -07 000000581 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:05:53.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.044 -07 000000424 INF: FPGA: Recv ZSGSRD 35616
17-03-18 06:05:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.054 -07 000000581 INF: FPGA: Recv ZSGSRD 35609
17-03-18 06:05:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:05:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.074 -07 000000626 INF: FPGA: Recv ZSGSRD 35621
17-03-18 06:05:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.084 -07 000000569 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:05:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:53.094 -07 000000437 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:05:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:53.104 -07 000000626 INF: FPGA: Recv ZPIEZORD 31423
17-03-18 06:05:53.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:53.114 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-18 06:05:53.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35615 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35615 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35609 (-168.2 uncal um), Max = 35621 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:05:53.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35615, posNoise = 6, negNoise = 6
17-03-18 06:05:53.114 -07 000000610 INF: Z Motor: After move to -0.169110, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:53.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:05:53.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:53.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:53.114 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:53.114 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:53.114 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:53.114 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:53.114 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:53.114 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:53.114 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:53.114 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:53.114 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:53.114 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:53.124 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:05:53.124 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:53.124 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:05:53.124 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:53.134 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:05:53.134 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:05:53.134 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:05:53.134 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:05:53.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37119 150\n [Camera]
17-03-18 06:05:53.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:53.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:53.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:53.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:53.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:53.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:53.794 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:53.794 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:53.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2337783256, 0x0, 391868352) start.
17-03-18 06:05:53.794 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:53.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:05:53.984 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37119 837
17-03-18 06:05:54.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:54.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:05:54.184 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:05:54.184 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:54.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2337783256, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:05:54.184 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:05:54.184 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:54.184 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:54.194 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:05:54.194 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:05:54.194 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:05:54.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:54.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:54.344 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:54.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:54.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:54.354 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:54.474 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:54.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:05:54.474 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:54.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:05:54.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:05:54.534 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:54.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37119 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:05:54.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:54.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169121667439951. ------
17-03-18 06:05:54.544 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:54.544 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17582 mm
17-03-18 06:05:54.544 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:54.544 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38408, sync = True, waitForSettling = False)
17-03-18 06:05:54.544 -07 000000502 INF: Z Motor: Moving to -0.175821 mm, started at -0.169122 mm, distance = -6.70 um
17-03-18 06:05:54.544 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:54.544 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:05:54.544 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:05:54.554 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:54.554 -07 000000502 INF: FPGA: Xmit ZDACW 38408\n [Z Motor]
17-03-18 06:05:54.554 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:05:54.564 -07 000000502 INF: FPGA: 'ZDACW 38408' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:05:54.564 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:54.564 -07 000000424 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:05:54.574 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:54.574 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:05:54.574 -07 000000438 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:54.574 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:54.574 -07 000000438 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:05:54.584 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:54.584 -07 000000424 INF: FPGA: Recv ZDACR 38408
17-03-18 06:05:54.594 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:05:54.594 -07 000000502 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:05:54.594 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:54.774 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:54.774 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:05:54.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:05:54.874 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:05:54.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:54.874 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:05:54.874 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:05:54.874 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:54.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:54.874 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:54.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 06:05:54.884 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 06:05:54.964 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:05:54.964 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:05:55.014 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:55.024 -07 000000606 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:05:55.024 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:05:55.024 -07 000000438 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:55.024 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:05:55.024 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:05:55.514 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.990831,
17-03-18 06:05:55.974 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:55.974 -07 000000502 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:05:55.984 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:05:55.984 -07 000000438 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:56.014 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:05:56.014 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:05:56.014 -07 000000438 INF: Y Motor: Moved to 65.7129 after 1471 ms (table move)
17-03-18 06:05:56.024 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175821 mm (DAC = 38408)
17-03-18 06:05:56.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:05:56.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:05:56.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.034 -07 000000438 INF: FPGA: Recv ZSGSRD 36651
17-03-18 06:05:56.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.044 -07 000000606 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:05:56.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.054 -07 000000461 INF: FPGA: Recv ZSGSRD 36659
17-03-18 06:05:56.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.064 -07 000000579 INF: FPGA: Recv ZSGSRD 36655
17-03-18 06:05:56.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.074 -07 000000502 INF: FPGA: Recv ZSGSRD 36664
17-03-18 06:05:56.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.084 -07 000000579 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:05:56.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.094 -07 000000438 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:05:56.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.104 -07 000000606 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:05:56.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:56.114 -07 000000502 INF: FPGA: Recv ZSGSRD 36664
17-03-18 06:05:56.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:56.124 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:56.124 -07 000000438 INF: FPGA: Recv ZPIEZORD 32793
17-03-18 06:05:56.134 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.6 V.
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36658 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36650 (-174.9 uncal um), Max = 36664 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36658, posNoise = 6, negNoise = 8
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: After move to -0.175821, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: Settle wait time = 1475 ms, measure time = 108 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:05:56.134 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:05:56.184 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:05:56.184 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:05:56.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:56.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:56.184 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:56.184 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:56.184 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:05:56.184 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:56.184 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:56.184 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:05:56.194 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:05:56.194 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:05:56.204 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:05:56.204 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 06:05:56.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:05:56.254 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:05:56.554 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:05:56.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:05:56.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:05:56.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) start.
17-03-18 06:05:56.594 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:05:56.594 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:05:56.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:05:56.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2318701872, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:05:56.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:56.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:05:56.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:05:56.694 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:56.694 -07 000000512 INF: Autofocus start
17-03-18 06:05:56.694 -07 000000512 INF: MeasureProfile start
17-03-18 06:05:56.694 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:56.704 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:05:56.704 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:05:56.704 -07 000000512 INF: MeasureProfile done
17-03-18 06:05:56.704 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:05:56.704 -07 000000512 INF: Autofocus finished
17-03-18 06:05:56.824 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:05:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:05:56.904 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:05:56.904 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:05:56.904 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175822120703808. ----------
17-03-18 06:05:56.904 -07 000000610 INF: Cycle	145	Tile	8	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:05:56.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36905, sync = True, waitForSettling = True)
17-03-18 06:05:56.914 -07 000000610 INF: Z Motor: Moving to -0.168940 mm, started at -0.175822 mm, distance = 6.88 um
17-03-18 06:05:56.914 -07 000000610 INF: FPGA: Xmit ZDACW 36905\n [Z Motor]
17-03-18 06:05:56.914 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:05:56.924 -07 000000610 INF: FPGA: 'ZDACW 36905' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:56.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:56.924 -07 000000606 INF: FPGA: Recv ZDACR 36905
17-03-18 06:05:56.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:56.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:05:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.084 -07 000000502 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:05:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:05:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.104 -07 000000424 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:05:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.114 -07 000000512 INF: FPGA: Recv ZSGSRD 35580
17-03-18 06:05:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.124 -07 000000502 INF: FPGA: Recv ZSGSRD 35588
17-03-18 06:05:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.134 -07 000000461 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:05:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:05:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.154 -07 000000579 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:05:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.164 -07 000000502 INF: FPGA: Recv ZSGSRD 35595
17-03-18 06:05:57.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:05:57.174 -07 000000569 INF: FPGA: Recv ZSGSRD 35584
17-03-18 06:05:57.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:05:57.184 -07 000000579 INF: FPGA: Recv ZPIEZORD 31388
17-03-18 06:05:57.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:05:57.194 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.3 V.
17-03-18 06:05:57.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35589 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35596 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:05:57.194 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35589, posNoise = 7, negNoise = 9
17-03-18 06:05:57.194 -07 000000610 INF: Z Motor: After move to -0.168940, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:05:57.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:05:57.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:05:57.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:05:57.194 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:05:57.194 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:05:57.194 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:05:57.194 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:05:57.194 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:05:57.194 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:05:57.194 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:05:57.194 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:05:57.194 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:05:57.194 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:05:57.204 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:05:57.204 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:05:57.204 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 06:05:57.204 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:05:57.214 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:05:57.214 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:05:57.214 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:05:57.214 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:05:57.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37082 150\n [Camera]
17-03-18 06:05:57.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:05:57.864 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:05:57.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:05:57.864 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:57.864 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:57.864 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:05:57.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:05:57.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:05:57.864 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:57.864 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:57.864 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2333377952, 0x0, 418435064) start.
17-03-18 06:05:58.054 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37082 837
17-03-18 06:05:58.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:05:58.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:05:58.244 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:05:58.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:58.244 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2333377952, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:05:58.244 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:05:58.244 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:58.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:58.244 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:05:58.254 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:58.254 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:05:58.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:05:58.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:05:58.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:05:58.434 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:05:58.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:05:58.434 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:05:58.434 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2368800216, 0x0, 391868352) start.
17-03-18 06:05:58.434 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:05:58.434 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:05:58.434 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:05:58.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:05:58.614 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:05:58.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37082 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-18 06:05:58.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:05:58.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168954637924266. ------
17-03-18 06:05:58.624 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:05:58.624 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17537 mm
17-03-18 06:05:58.624 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:05:58.624 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:05:58.624 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38310, sync = True, waitForSettling = False)
17-03-18 06:05:58.624 -07 000000606 INF: Z Motor: Moving to -0.175372 mm, started at -0.168955 mm, distance = -6.42 um
17-03-18 06:05:58.624 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:05:58.624 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:05:58.634 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:05:58.634 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:58.634 -07 000000447 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:05:58.644 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:05:58.644 -07 000000606 INF: FPGA: Xmit ZDACW 38310\n [Z Motor]
17-03-18 06:05:58.644 -07 000000438 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:58.644 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:05:58.644 -07 000000438 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:05:58.644 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:05:58.654 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:05:58.654 -07 000000606 INF: FPGA: 'ZDACW 38310' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:05:58.664 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:05:58.674 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:05:58.674 -07 000000447 INF: FPGA: Recv ZDACR 38310
17-03-18 06:05:58.784 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 137 ms overall
17-03-18 06:05:58.784 -07 000000606 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 06:05:58.824 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:05:58.824 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:05:58.824 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:58.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2368800216, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:05:58.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:05:58.824 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:05:58.834 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:58.834 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:05:58.834 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:05:58.834 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:05:58.854 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:05:58.854 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:05:59.034 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:05:59.034 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:05:59.094 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:05:59.094 -07 000000447 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:05:59.104 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:05:59.104 -07 000000438 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:05:59.104 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:05:59.104 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:06:00.054 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:00.054 -07 000000569 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:06:00.064 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:00.064 -07 000000438 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:00.094 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:00.094 -07 000000438 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:00.094 -07 000000438 INF: Y Motor: Moved to 66.5376 after 1468 ms (table move)
17-03-18 06:06:00.094 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175372 mm (DAC = 38310)
17-03-18 06:06:00.094 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.104 -07 000000461 INF: FPGA: Recv ZSGSRD 36595
17-03-18 06:06:00.104 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:06:00.104 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.104 -07 000000461 INF: FPGA: Recv ZSGSRD 36592
17-03-18 06:06:00.114 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:00.114 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.114 -07 000000569 INF: FPGA: Recv ZSGSRD 36588
17-03-18 06:06:00.124 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.124 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.124 -07 000000438 INF: FPGA: Recv ZSGSRD 36588
17-03-18 06:06:00.134 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.134 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.134 -07 000000606 INF: FPGA: Recv ZSGSRD 36586
17-03-18 06:06:00.144 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.144 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.144 -07 000000438 INF: FPGA: Recv ZSGSRD 36584
17-03-18 06:06:00.154 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.154 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36593
17-03-18 06:06:00.164 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.164 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.164 -07 000000512 INF: FPGA: Recv ZSGSRD 36587
17-03-18 06:06:00.174 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.174 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.174 -07 000000461 INF: FPGA: Recv ZSGSRD 36594
17-03-18 06:06:00.184 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.184 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:00.184 -07 000000512 INF: FPGA: Recv ZSGSRD 36590
17-03-18 06:06:00.194 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.194 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:00.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 32698
17-03-18 06:06:00.204 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36590 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36589 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36584 (-174.5 uncal um), Max = 36595 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36590, posNoise = 5, negNoise = 6
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: After move to -0.175372, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: Settle wait time = 1473 ms, measure time = 101 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:06:00.204 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:00.254 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:06:00.254 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:00.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:00.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:00.254 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:00.254 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:00.254 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:00.254 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:00.264 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:00.264 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:00.264 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:00.264 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:00.274 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:06:00.274 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:06:00.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:00.324 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:00.624 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:00.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:00.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:00.654 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:00.664 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:00.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:06:00.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:06:00.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:00.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:06:00.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:06:00.764 -07 000000502 INF: Autofocus start
17-03-18 06:06:00.764 -07 000000502 INF: MeasureProfile start
17-03-18 06:06:00.764 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:00.774 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:00.774 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:06:00.774 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:00.784 -07 000000502 INF: MeasureProfile done
17-03-18 06:06:00.784 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:06:00.784 -07 000000502 INF: Autofocus finished
17-03-18 06:06:00.874 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.981281,
17-03-18 06:06:00.974 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:00.974 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-18 06:06:00.984 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175385274278168. ----------
17-03-18 06:06:00.984 -07 000000610 INF: Cycle	145	Tile	9	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:00.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36860, sync = True, waitForSettling = True)
17-03-18 06:06:00.984 -07 000000610 INF: Z Motor: Moving to -0.168734 mm, started at -0.175385 mm, distance = 6.65 um
17-03-18 06:06:00.984 -07 000000610 INF: FPGA: Xmit ZDACW 36860\n [Z Motor]
17-03-18 06:06:00.984 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:06:00.994 -07 000000610 INF: FPGA: 'ZDACW 36860' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:06:00.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:00.994 -07 000000461 INF: FPGA: Recv ZDACR 36860
17-03-18 06:06:01.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:01.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.154 -07 000000467 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:06:01.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:01.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.164 -07 000000382 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:06:01.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.174 -07 000000438 INF: FPGA: Recv ZSGSRD 35557
17-03-18 06:06:01.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.184 -07 000000382 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:06:01.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.194 -07 000000512 INF: FPGA: Recv ZSGSRD 35559
17-03-18 06:06:01.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35562
17-03-18 06:06:01.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.214 -07 000000512 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:06:01.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.224 -07 000000569 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:06:01.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.234 -07 000000512 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:06:01.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:01.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35559
17-03-18 06:06:01.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:01.254 -07 000000502 INF: FPGA: Recv ZPIEZORD 31335
17-03-18 06:06:01.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:01.264 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.3 V.
17-03-18 06:06:01.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35556 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35556 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35549 (-167.8 uncal um), Max = 35562 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:06:01.264 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35556, posNoise = 6, negNoise = 7
17-03-18 06:06:01.264 -07 000000610 INF: Z Motor: After move to -0.168734, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:01.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:06:01.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:01.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:01.264 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:01.264 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:01.264 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:01.264 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:01.264 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:01.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:01.264 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:06:01.264 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:01.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:01.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:01.274 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:01.274 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:01.274 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:01.274 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:01.284 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:06:01.284 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:06:01.284 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:06:01.284 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:06:01.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37037 150\n [Camera]
17-03-18 06:06:01.484 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 06:06:01.834 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:01.934 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:01.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:01.934 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:01.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:01.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:01.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:01.944 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:01.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:01.944 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:01.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:06:02.134 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37037 840
17-03-18 06:06:02.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:02.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:06:02.324 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:06:02.324 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:02.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:06:02.324 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:06:02.324 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:02.324 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:02.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:06:02.324 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:02.334 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:06:02.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:02.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:02.494 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:02.494 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:02.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:02.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:02.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:02.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 06:06:02.504 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:02.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1099155104, 0x0, 391868352) start.
17-03-18 06:06:02.684 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:06:02.684 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:02.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37037 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-18 06:06:02.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:02.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168742638923588. ------
17-03-18 06:06:02.694 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17553 mm
17-03-18 06:06:02.694 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:02.694 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:02.694 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38344, sync = True, waitForSettling = False)
17-03-18 06:06:02.694 -07 000000382 INF: Z Motor: Moving to -0.175528 mm, started at -0.168743 mm, distance = -6.78 um
17-03-18 06:06:02.694 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:06:02.694 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:06:02.694 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:02.704 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:06:02.704 -07 000000382 INF: FPGA: Xmit ZDACW 38344\n [Z Motor]
17-03-18 06:06:02.704 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:06:02.714 -07 000000382 INF: FPGA: 'ZDACW 38344' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:06:02.714 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:02.714 -07 000000569 INF: FPGA: Recv ZDACR 38344
17-03-18 06:06:02.724 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:02.724 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:02.724 -07 000000382 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 06:06:02.734 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:02.734 -07 000000461 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:06:02.744 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-18 06:06:02.744 -07 000000502 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:02.744 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:02.744 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:06:02.744 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:02.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:06:02.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:06:02.884 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:02.884 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:02.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1099155104, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:06:02.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:06:02.884 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:02.894 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:06:02.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:06:02.894 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:06:02.924 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:02.924 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:06:03.114 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:06:03.114 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:06:03.174 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:03.174 -07 000000447 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:06:03.184 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:03.184 -07 000000502 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:03.184 -07 000000502 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:06:03.184 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.235 mm/sec
17-03-18 06:06:04.134 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:04.134 -07 000000382 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:06:04.144 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:04.144 -07 000000502 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:04.174 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:04.174 -07 000000502 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:04.174 -07 000000502 INF: Y Motor: Moved to 67.3706 after 1474 ms (table move)
17-03-18 06:06:04.174 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175528 mm (DAC = 38344)
17-03-18 06:06:04.174 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.174 -07 000000382 INF: FPGA: Recv ZSGSRD 36620
17-03-18 06:06:04.184 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:04.184 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.184 -07 000000447 INF: FPGA: Recv ZSGSRD 36613
17-03-18 06:06:04.194 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.194 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.194 -07 000000382 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:06:04.204 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.204 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.204 -07 000000569 INF: FPGA: Recv ZSGSRD 36609
17-03-18 06:06:04.214 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.214 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.214 -07 000000461 INF: FPGA: Recv ZSGSRD 36612
17-03-18 06:06:04.224 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.224 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.224 -07 000000382 INF: FPGA: Recv ZSGSRD 36620
17-03-18 06:06:04.234 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.234 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.234 -07 000000438 INF: FPGA: Recv ZSGSRD 36625
17-03-18 06:06:04.244 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.244 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.244 -07 000000382 INF: FPGA: Recv ZSGSRD 36614
17-03-18 06:06:04.254 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.254 -07 000000461 INF: FPGA: Recv ZSGSRD 36607
17-03-18 06:06:04.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:04.264 -07 000000502 INF: FPGA: Recv ZSGSRD 36612
17-03-18 06:06:04.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.274 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:04.274 -07 000000382 INF: FPGA: Recv ZPIEZORD 32733
17-03-18 06:06:04.284 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.6 V.
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36614 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36612 (-174.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36607 (-174.6 uncal um), Max = 36625 (-174.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36614, posNoise = 11, negNoise = 7
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: After move to -0.175528, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: Settle wait time = 1477 ms, measure time = 105 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:06:04.284 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:04.334 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:06:04.334 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:04.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:04.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:04.334 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:04.334 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:04.334 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:04.334 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:04.334 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:04.334 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:04.344 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:04.344 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:04.354 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:06:04.354 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:06:04.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:04.394 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:04.694 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:04.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:04.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:04.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) start.
17-03-18 06:06:04.734 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:04.734 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:04.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:06:04.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:06:04.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:04.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:04.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:06:04.834 -07 000000461 INF: Autofocus start
17-03-18 06:06:04.834 -07 000000461 INF: MeasureProfile start
17-03-18 06:06:04.834 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:04.834 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:04.844 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:04.844 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:04.844 -07 000000461 INF: MeasureProfile done
17-03-18 06:06:04.844 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:06:04.844 -07 000000461 INF: Autofocus finished
17-03-18 06:06:05.044 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:05.044 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:06:05.044 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175539455369571. ----------
17-03-18 06:06:05.054 -07 000000610 INF: Cycle	145	Tile	10	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:05.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36841, sync = True, waitForSettling = True)
17-03-18 06:06:05.054 -07 000000610 INF: Z Motor: Moving to -0.168647 mm, started at -0.175539 mm, distance = 6.89 um
17-03-18 06:06:05.054 -07 000000610 INF: FPGA: Xmit ZDACW 36841\n [Z Motor]
17-03-18 06:06:05.054 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:06:05.064 -07 000000610 INF: FPGA: 'ZDACW 36841' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:05.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:05.064 -07 000000447 INF: FPGA: Recv ZDACR 36841
17-03-18 06:06:05.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:05.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.224 -07 000000502 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:06:05.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.234 -07 000000569 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:06:05.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.244 -07 000000438 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:06:05.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.254 -07 000000569 INF: FPGA: Recv ZSGSRD 35539
17-03-18 06:06:05.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.264 -07 000000438 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:06:05.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.274 -07 000000382 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:06:05.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.284 -07 000000502 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:06:05.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.294 -07 000000382 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:06:05.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.304 -07 000000502 INF: FPGA: Recv ZSGSRD 35540
17-03-18 06:06:05.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:05.314 -07 000000382 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:06:05.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:05.324 -07 000000502 INF: FPGA: Recv ZPIEZORD 31342
17-03-18 06:06:05.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:05.334 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.3 V.
17-03-18 06:06:05.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35549 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:05.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 6, negNoise = 4
17-03-18 06:06:05.334 -07 000000610 INF: Z Motor: After move to -0.168647, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:05.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:06:05.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:05.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:05.334 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:05.334 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:05.334 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:05.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:05.334 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:05.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:05.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:06:05.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:05.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:06:05.334 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:05.334 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:06:05.334 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:05.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:05.334 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:05.344 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:06:05.344 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:06:05.354 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:06:05.354 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:06:05.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37018 150\n [Camera]
17-03-18 06:06:05.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:06.004 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:06.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:06.004 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:06.004 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:06.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:06:06.004 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:06.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:06.014 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:06.014 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:06.014 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:06:06.194 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37018 837
17-03-18 06:06:06.234 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.993549,
17-03-18 06:06:06.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:06.384 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:06:06.384 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:06:06.384 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:06.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:06:06.384 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:06:06.384 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:06.384 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:06.384 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:06.384 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:06:06.394 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:06:06.564 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:06.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:06.564 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:06.564 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:06.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:06:06.564 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:06.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:06.574 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:06.574 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:06.574 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:06:06.754 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:06.754 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:06.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37018 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:06:06.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:06.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168659124165745. ------
17-03-18 06:06:06.764 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:06.764 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17490 mm
17-03-18 06:06:06.764 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:06.764 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:06:06.764 -07 000000438 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:06:06.764 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38208, sync = True, waitForSettling = False)
17-03-18 06:06:06.764 -07 000000467 INF: Z Motor: Moving to -0.174905 mm, started at -0.168659 mm, distance = -6.25 um
17-03-18 06:06:06.764 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:06.774 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:06:06.774 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:06.774 -07 000000447 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:06:06.784 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:06:06.784 -07 000000438 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:06.914 -07 000000438 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:06.914 -07 000000438 INF: Y Motor: Moving 1347 steps-25
17-03-18 06:06:06.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:06.914 -07 000000467 INF: FPGA: Xmit ZDACW 38208\n [Z Motor]
17-03-18 06:06:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:06.914 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:06:06.924 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:06.924 -07 000000467 INF: FPGA: 'ZDACW 38208' command took 132 ms to send, 0 ms to get response, and 152 ms overall
17-03-18 06:06:06.934 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:06.944 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:06.944 -07 000000424 INF: FPGA: Recv ZDACR 38208
17-03-18 06:06:06.954 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:06.954 -07 000000467 INF: Z Motor: MoveAbsStepped took 182 ms (did NOT wait for settling yet))
17-03-18 06:06:06.964 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:06:06.964 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:06:06.964 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:06.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:06:06.974 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:06:06.974 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:06.974 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:06.974 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:06:06.974 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:06:06.974 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:06:07.124 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:07.124 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 352 ms overall
17-03-18 06:06:07.304 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:06:07.304 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:06:07.354 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:07.364 -07 000000467 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:06:07.364 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:07.364 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:07.364 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:06:07.364 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.842 mm, average velocity = 2.126 mm/sec
17-03-18 06:06:08.314 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:08.314 -07 000000585 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:06:08.324 -07 000000438 INF: FPGA: 'YRDPOS' command took 6 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:08.324 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:08.354 -07 000000438 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:08.354 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:08.354 -07 000000438 INF: Y Motor: Moved to 68.2036 after 1585 ms (table move)
17-03-18 06:06:08.354 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174905 mm (DAC = 38208)
17-03-18 06:06:08.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.364 -07 000000626 INF: FPGA: Recv ZSGSRD 36519
17-03-18 06:06:08.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:08.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.364 -07 000000579 INF: FPGA: Recv ZSGSRD 36519
17-03-18 06:06:08.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.374 -07 000000438 INF: FPGA: Recv ZSGSRD 36515
17-03-18 06:06:08.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.394 -07 000000569 INF: FPGA: Recv ZSGSRD 36513
17-03-18 06:06:08.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:06:08.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.404 -07 000000585 INF: FPGA: Recv ZSGSRD 36522
17-03-18 06:06:08.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.414 -07 000000438 INF: FPGA: Recv ZSGSRD 36514
17-03-18 06:06:08.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.424 -07 000000585 INF: FPGA: Recv ZSGSRD 36518
17-03-18 06:06:08.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.434 -07 000000569 INF: FPGA: Recv ZSGSRD 36525
17-03-18 06:06:08.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.444 -07 000000579 INF: FPGA: Recv ZSGSRD 36517
17-03-18 06:06:08.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:08.454 -07 000000438 INF: FPGA: Recv ZSGSRD 36516
17-03-18 06:06:08.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.464 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:08.464 -07 000000579 INF: FPGA: Recv ZPIEZORD 32625
17-03-18 06:06:08.474 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.6 V.
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36518 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36518 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36513 (-174.0 uncal um), Max = 36525 (-174.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36518, posNoise = 7, negNoise = 5
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: After move to -0.174905, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: Settle wait time = 1589 ms, measure time = 114 ms (allowed 150 ms), total time = 1703 ms
17-03-18 06:06:08.474 -07 000000382 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:08.514 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 06:06:08.514 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:08.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:08.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:08.514 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:08.514 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:08.514 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:08.514 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:08.514 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:08.514 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:08.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:08.524 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:08.524 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:06:08.524 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:06:08.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:08.574 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:08.874 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:08.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:08.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:08.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:08.914 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:08.914 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:08.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:06:08.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:06:08.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:08.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:08.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:06:09.014 -07 000000579 INF: Autofocus start
17-03-18 06:06:09.014 -07 000000579 INF: MeasureProfile start
17-03-18 06:06:09.014 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:09.014 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:09.024 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:09.024 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:09.024 -07 000000579 INF: MeasureProfile done
17-03-18 06:06:09.024 -07 000000579 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:06:09.024 -07 000000579 INF: Autofocus finished
17-03-18 06:06:09.224 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:09.224 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:09.224 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174922731003962. ----------
17-03-18 06:06:09.234 -07 000000610 INF: Cycle	145	Tile	11	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:09.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36740, sync = True, waitForSettling = True)
17-03-18 06:06:09.234 -07 000000610 INF: Z Motor: Moving to -0.168185 mm, started at -0.174923 mm, distance = 6.74 um
17-03-18 06:06:09.234 -07 000000610 INF: FPGA: Xmit ZDACW 36740\n [Z Motor]
17-03-18 06:06:09.234 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:06:09.244 -07 000000610 INF: FPGA: 'ZDACW 36740' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:09.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:09.244 -07 000000437 INF: FPGA: Recv ZDACR 36740
17-03-18 06:06:09.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:09.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.404 -07 000000579 INF: FPGA: Recv ZSGSRD 35467
17-03-18 06:06:09.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.414 -07 000000569 INF: FPGA: Recv ZSGSRD 35469
17-03-18 06:06:09.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.424 -07 000000438 INF: FPGA: Recv ZSGSRD 35468
17-03-18 06:06:09.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.434 -07 000000569 INF: FPGA: Recv ZSGSRD 35479
17-03-18 06:06:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.444 -07 000000437 INF: FPGA: Recv ZSGSRD 35469
17-03-18 06:06:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.454 -07 000000629 INF: FPGA: Recv ZSGSRD 35471
17-03-18 06:06:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35470
17-03-18 06:06:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.474 -07 000000438 INF: FPGA: Recv ZSGSRD 35471
17-03-18 06:06:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.484 -07 000000629 INF: FPGA: Recv ZSGSRD 35467
17-03-18 06:06:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:09.494 -07 000000437 INF: FPGA: Recv ZSGSRD 35468
17-03-18 06:06:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:09.504 -07 000000569 INF: FPGA: Recv ZPIEZORD 31243
17-03-18 06:06:09.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:09.514 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.3 V.
17-03-18 06:06:09.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35469 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35467 (-167.3 uncal um), Max = 35479 (-167.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:06:09.514 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 9, negNoise = 3
17-03-18 06:06:09.514 -07 000000610 INF: Z Motor: After move to -0.168185, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:09.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:06:09.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:09.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:09.514 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:09.514 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:09.514 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:09.514 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:09.514 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:09.514 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:09.514 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:09.514 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:09.514 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:09.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:09.524 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:09.524 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:09.524 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:09.524 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:09.534 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:06:09.534 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:06:09.534 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:06:09.534 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:06:09.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36917 150\n [Camera]
17-03-18 06:06:09.734 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:10.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:06:10.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:06:10.184 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:10.194 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:06:10.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:06:10.194 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:10.194 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:10.194 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:10.204 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:10.204 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:10.374 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36917 837
17-03-18 06:06:10.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:10.584 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:06:10.584 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:06:10.584 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:10.594 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:10.594 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:06:10.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:06:10.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:06:10.594 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:10.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:10.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:06:10.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:10.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:10.744 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:10.744 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:10.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:10.754 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:10.754 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:10.754 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 06:06:10.754 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:10.754 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:06:10.934 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:10.934 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:10.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36917 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:06:10.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:10.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168190156679396. ------
17-03-18 06:06:11.064 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17488 mm
17-03-18 06:06:11.064 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:11.064 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:11.064 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:06:11.064 -07 000000585 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:06:11.064 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38202, sync = True, waitForSettling = False)
17-03-18 06:06:11.064 -07 000000579 INF: Z Motor: Moving to -0.174878 mm, started at -0.168190 mm, distance = -6.69 um
17-03-18 06:06:11.064 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:11.074 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:11.074 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:11.074 -07 000000437 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:06:11.084 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:06:11.084 -07 000000585 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:11.084 -07 000000585 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:11.084 -07 000000585 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:06:11.084 -07 000000579 INF: FPGA: Xmit ZDACW 38202\n [Z Motor]
17-03-18 06:06:11.084 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:06:11.094 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:11.094 -07 000000579 INF: FPGA: 'ZDACW 38202' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:06:11.104 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:11.114 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:11.114 -07 000000606 INF: FPGA: Recv ZDACR 38202
17-03-18 06:06:11.124 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:11.124 -07 000000579 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:06:11.134 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:06:11.134 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:06:11.144 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:11.144 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:11.144 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:06:11.144 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:06:11.144 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:11.154 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:06:11.154 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:06:11.154 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:06:11.294 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:11.294 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:06:11.474 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:06:11.474 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:06:11.524 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:11.534 -07 000000512 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:06:11.534 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:11.534 -07 000000585 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:11.534 -07 000000585 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:06:11.534 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 06:06:11.594 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.001704,
17-03-18 06:06:11.824 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:12.484 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:12.484 -07 000000461 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:06:12.494 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.494 -07 000000585 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:12.524 -07 000000585 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:12.524 -07 000000585 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:12.524 -07 000000585 INF: Y Motor: Moved to 69.0259 after 1456 ms (table move)
17-03-18 06:06:12.524 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174878 mm (DAC = 38202)
17-03-18 06:06:12.524 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.534 -07 000000569 INF: FPGA: Recv ZSGSRD 36508
17-03-18 06:06:12.534 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 06:06:12.534 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.534 -07 000000606 INF: FPGA: Recv ZSGSRD 36508
17-03-18 06:06:12.544 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:12.544 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.544 -07 000000382 INF: FPGA: Recv ZSGSRD 36512
17-03-18 06:06:12.554 -07 000000592 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.554 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.554 -07 000000569 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:06:12.564 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.564 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.564 -07 000000382 INF: FPGA: Recv ZSGSRD 36503
17-03-18 06:06:12.574 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.574 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.574 -07 000000629 INF: FPGA: Recv ZSGSRD 36512
17-03-18 06:06:12.584 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.584 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.584 -07 000000437 INF: FPGA: Recv ZSGSRD 36513
17-03-18 06:06:12.594 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.594 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.594 -07 000000585 INF: FPGA: Recv ZSGSRD 36512
17-03-18 06:06:12.604 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.604 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.604 -07 000000424 INF: FPGA: Recv ZSGSRD 36515
17-03-18 06:06:12.614 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.614 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:12.614 -07 000000629 INF: FPGA: Recv ZSGSRD 36516
17-03-18 06:06:12.624 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.624 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:12.624 -07 000000585 INF: FPGA: Recv ZPIEZORD 32622
17-03-18 06:06:12.634 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.6 V.
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36503 (-173.9 uncal um), Max = 36516 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 5, negNoise = 8
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: After move to -0.174878, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:06:12.634 -07 000000592 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:12.684 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:06:12.684 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:12.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:12.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:12.684 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:12.684 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:12.684 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:12.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:12.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:06:12.684 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:12.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:12.694 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:12.704 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:06:12.704 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:06:12.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:12.754 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:13.054 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:13.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:13.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:13.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:13.094 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:13.094 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:13.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:06:13.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:06:13.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:13.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:13.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:06:13.194 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:13.194 -07 000000424 INF: Autofocus start
17-03-18 06:06:13.194 -07 000000424 INF: MeasureProfile start
17-03-18 06:06:13.194 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:13.204 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:13.204 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:13.214 -07 000000424 INF: MeasureProfile done
17-03-18 06:06:13.214 -07 000000424 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:06:13.214 -07 000000424 INF: Autofocus finished
17-03-18 06:06:13.404 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:13.404 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:13.404 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174877761518969. ----------
17-03-18 06:06:13.404 -07 000000610 INF: Cycle	145	Tile	12	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:13.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36682, sync = True, waitForSettling = True)
17-03-18 06:06:13.414 -07 000000610 INF: Z Motor: Moving to -0.167919 mm, started at -0.174878 mm, distance = 6.96 um
17-03-18 06:06:13.414 -07 000000610 INF: FPGA: Xmit ZDACW 36682\n [Z Motor]
17-03-18 06:06:13.414 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:06:13.424 -07 000000610 INF: FPGA: 'ZDACW 36682' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:13.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:13.424 -07 000000437 INF: FPGA: Recv ZDACR 36682
17-03-18 06:06:13.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:13.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.584 -07 000000382 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:06:13.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.594 -07 000000569 INF: FPGA: Recv ZSGSRD 35427
17-03-18 06:06:13.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.604 -07 000000424 INF: FPGA: Recv ZSGSRD 35433
17-03-18 06:06:13.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.614 -07 000000569 INF: FPGA: Recv ZSGSRD 35429
17-03-18 06:06:13.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.624 -07 000000629 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:06:13.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.634 -07 000000424 INF: FPGA: Recv ZSGSRD 35432
17-03-18 06:06:13.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.644 -07 000000382 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:06:13.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.654 -07 000000437 INF: FPGA: Recv ZSGSRD 35433
17-03-18 06:06:13.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.664 -07 000000382 INF: FPGA: Recv ZSGSRD 35427
17-03-18 06:06:13.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:13.674 -07 000000437 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:06:13.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:13.684 -07 000000629 INF: FPGA: Recv ZPIEZORD 31188
17-03-18 06:06:13.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:13.694 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.3 V.
17-03-18 06:06:13.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35429 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35428 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35427 (-167.0 uncal um), Max = 35433 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:06:13.694 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35429, posNoise = 4, negNoise = 2
17-03-18 06:06:13.694 -07 000000610 INF: Z Motor: After move to -0.167919, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:13.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:06:13.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:13.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:13.694 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:13.694 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:13.694 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:13.694 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:13.694 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:13.694 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:13.694 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:13.694 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:13.694 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:13.694 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:13.704 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:13.704 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:13.704 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:13.704 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:13.704 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:06:13.704 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:06:13.714 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:06:13.714 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:06:13.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36859 150\n [Camera]
17-03-18 06:06:13.914 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:14.364 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:14.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:14.364 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:14.364 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:14.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:14.364 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:14.374 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:14.374 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:14.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:14.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:14.554 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36859 837
17-03-18 06:06:14.704 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:14.744 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 06:06:14.744 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:06:14.744 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:14.744 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:06:14.744 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:06:14.744 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:14.744 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:14.754 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:14.754 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:06:14.754 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:06:14.924 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:14.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:14.924 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:14.924 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:14.924 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2335576936, 0x0, 391868352) start.
17-03-18 06:06:14.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:14.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:14.924 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:14.924 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:14.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:06:15.114 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:15.114 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:15.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36859 150' command took 2 ms to send, 1396 ms to get response, and 1404 ms overall
17-03-18 06:06:15.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:15.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167926763981584. ------
17-03-18 06:06:15.124 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:15.124 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17378 mm
17-03-18 06:06:15.124 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:15.124 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:15.124 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:06:15.124 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:06:15.124 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37963, sync = True, waitForSettling = False)
17-03-18 06:06:15.124 -07 000000585 INF: Z Motor: Moving to -0.173783 mm, started at -0.167927 mm, distance = -5.86 um
17-03-18 06:06:15.134 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:15.134 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:15.134 -07 000000626 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:06:15.144 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:06:15.144 -07 000000424 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:15.144 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:15.144 -07 000000424 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:06:15.144 -07 000000585 INF: FPGA: Xmit ZDACW 37963\n [Z Motor]
17-03-18 06:06:15.144 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:06:15.154 -07 000000585 INF: FPGA: 'ZDACW 37963' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:06:15.154 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:15.164 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:15.174 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:15.174 -07 000000467 INF: FPGA: Recv ZDACR 37963
17-03-18 06:06:15.184 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:15.184 -07 000000585 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:06:15.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2335576936, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:06:15.324 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:06:15.324 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:15.324 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:06:15.324 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:06:15.324 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:15.334 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:15.334 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:06:15.334 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:06:15.334 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:06:15.354 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:15.354 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:06:15.534 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:06:15.534 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:06:15.594 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:15.594 -07 000000467 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:06:15.604 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:15.604 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:15.604 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:06:15.604 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 06:06:16.554 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:16.554 -07 000000581 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:06:16.564 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:16.564 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:16.594 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:16.594 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:16.594 -07 000000424 INF: Y Motor: Moved to 69.8623 after 1465 ms (table move)
17-03-18 06:06:16.594 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173783 mm (DAC = 37963)
17-03-18 06:06:16.594 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.594 -07 000000626 INF: FPGA: Recv ZSGSRD 36350
17-03-18 06:06:16.604 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:16.604 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.604 -07 000000629 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:06:16.614 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.614 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36342
17-03-18 06:06:16.624 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.624 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.624 -07 000000467 INF: FPGA: Recv ZSGSRD 36334
17-03-18 06:06:16.634 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.644 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.644 -07 000000502 INF: FPGA: Recv ZSGSRD 36344
17-03-18 06:06:16.654 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:06:16.654 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.654 -07 000000437 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:06:16.664 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.664 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.664 -07 000000502 INF: FPGA: Recv ZSGSRD 36348
17-03-18 06:06:16.674 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.674 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.674 -07 000000569 INF: FPGA: Recv ZSGSRD 36345
17-03-18 06:06:16.684 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.684 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.684 -07 000000437 INF: FPGA: Recv ZSGSRD 36342
17-03-18 06:06:16.694 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.694 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:16.694 -07 000000502 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:06:16.704 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.704 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:16.704 -07 000000467 INF: FPGA: Recv ZPIEZORD 32432
17-03-18 06:06:16.714 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.6 V.
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36343 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36342 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36334 (-172.9 uncal um), Max = 36350 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36343, posNoise = 7, negNoise = 9
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: After move to -0.173783, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: Settle wait time = 1468 ms, measure time = 114 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:06:16.714 -07 000000592 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:16.754 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:06:16.754 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:16.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:16.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:16.754 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:16.754 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:16.754 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:16.754 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:16.754 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:16.754 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:16.764 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:16.764 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:16.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:06:16.774 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:06:16.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:16.824 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:16.824 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:16.954 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.015368,
17-03-18 06:06:17.124 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:17.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:17.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:17.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387874264, 0x0, 559484976) start.
17-03-18 06:06:17.164 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:17.164 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:17.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:06:17.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387874264, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:06:17.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:17.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:06:17.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:06:17.264 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:17.264 -07 000000585 INF: Autofocus start
17-03-18 06:06:17.264 -07 000000585 INF: MeasureProfile start
17-03-18 06:06:17.264 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:17.274 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:17.274 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:17.274 -07 000000585 INF: MeasureProfile done
17-03-18 06:06:17.274 -07 000000585 INF: X=112  Z correction [um]=0.5011052
17-03-18 06:06:17.274 -07 000000585 INF: Autofocus finished
17-03-18 06:06:17.474 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:17.474 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:06:17.474 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.173798493879153. ----------
17-03-18 06:06:17.474 -07 000000610 INF: Cycle	145	Tile	13	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:17.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36585, sync = True, waitForSettling = True)
17-03-18 06:06:17.484 -07 000000610 INF: Z Motor: Moving to -0.167475 mm, started at -0.173798 mm, distance = 6.32 um
17-03-18 06:06:17.484 -07 000000610 INF: FPGA: Xmit ZDACW 36585\n [Z Motor]
17-03-18 06:06:17.484 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:06:17.494 -07 000000610 INF: FPGA: 'ZDACW 36585' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:17.494 -07 000000592 INF: FPGA: Recv ZDACR 36585
17-03-18 06:06:17.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:17.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.654 -07 000000424 INF: FPGA: Recv ZSGSRD 35361
17-03-18 06:06:17.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:17.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.664 -07 000000592 INF: FPGA: Recv ZSGSRD 35359
17-03-18 06:06:17.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.674 -07 000000437 INF: FPGA: Recv ZSGSRD 35361
17-03-18 06:06:17.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.684 -07 000000585 INF: FPGA: Recv ZSGSRD 35356
17-03-18 06:06:17.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.694 -07 000000592 INF: FPGA: Recv ZSGSRD 35357
17-03-18 06:06:17.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.704 -07 000000585 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:06:17.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.714 -07 000000424 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:06:17.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.724 -07 000000592 INF: FPGA: Recv ZSGSRD 35365
17-03-18 06:06:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35359
17-03-18 06:06:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:17.744 -07 000000592 INF: FPGA: Recv ZSGSRD 35356
17-03-18 06:06:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:17.754 -07 000000424 INF: FPGA: Recv ZPIEZORD 31105
17-03-18 06:06:17.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:17.764 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.4 V.
17-03-18 06:06:17.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35356 (-166.6 uncal um), Max = 35365 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:17.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 5, negNoise = 4
17-03-18 06:06:17.764 -07 000000610 INF: Z Motor: After move to -0.167475, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:17.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:06:17.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:17.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:17.764 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:17.764 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:17.764 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:17.764 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:17.764 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:17.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:17.764 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:17.764 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:17.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:17.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:17.764 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:17.764 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:17.774 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:17.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:17.784 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:06:17.784 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:06:17.784 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:06:17.784 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:06:17.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36762 150\n [Camera]
17-03-18 06:06:17.994 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:18.444 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:18.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:18.444 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:18.444 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:18.444 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:06:18.444 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:18.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:18.444 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:18.454 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:18.454 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:06:18.634 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36762 837
17-03-18 06:06:18.794 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:06:18.824 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:06:18.824 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:06:18.824 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:18.824 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:06:18.824 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:06:18.824 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:18.834 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:18.834 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:06:18.834 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:06:18.844 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:06:19.004 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:19.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:19.004 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:19.004 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:19.004 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:06:19.004 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:19.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:19.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:19.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:19.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:06:19.194 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:19.194 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:19.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36762 150' command took 2 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-18 06:06:19.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:19.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167483493343802. ------
17-03-18 06:06:19.324 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:19.324 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17388 mm
17-03-18 06:06:19.324 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:19.324 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:06:19.324 -07 000000437 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 06:06:19.324 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:19.324 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37984, sync = True, waitForSettling = False)
17-03-18 06:06:19.324 -07 000000585 INF: Z Motor: Moving to -0.173880 mm, started at -0.167483 mm, distance = -6.40 um
17-03-18 06:06:19.334 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:19.334 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:19.334 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:06:19.344 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:06:19.344 -07 000000437 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:19.344 -07 000000437 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:19.344 -07 000000437 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:06:19.344 -07 000000585 INF: FPGA: Xmit ZDACW 37984\n [Z Motor]
17-03-18 06:06:19.344 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:06:19.354 -07 000000585 INF: FPGA: 'ZDACW 37984' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:06:19.354 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:19.364 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:19.374 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:19.374 -07 000000461 INF: FPGA: Recv ZDACR 37984
17-03-18 06:06:19.384 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:19.384 -07 000000585 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:06:19.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:06:19.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:06:19.394 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:19.404 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:19.404 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:06:19.404 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:06:19.404 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:19.404 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:06:19.404 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:06:19.414 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:06:19.554 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:19.554 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:06:19.734 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:06:19.734 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:06:19.784 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:19.794 -07 000000382 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:06:19.794 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:19.794 -07 000000437 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:19.794 -07 000000437 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:06:19.794 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.117 mm/sec
17-03-18 06:06:20.744 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:20.744 -07 000000447 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:06:20.754 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:20.754 -07 000000437 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:20.784 -07 000000437 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:20.784 -07 000000437 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:06:20.784 -07 000000437 INF: Y Motor: Moved to 70.6875 after 1455 ms (table move)
17-03-18 06:06:20.784 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173880 mm (DAC = 37984)
17-03-18 06:06:20.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.794 -07 000000437 INF: FPGA: Recv ZSGSRD 36352
17-03-18 06:06:20.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:06:20.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.794 -07 000000424 INF: FPGA: Recv ZSGSRD 36366
17-03-18 06:06:20.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.804 -07 000000437 INF: FPGA: Recv ZSGSRD 36350
17-03-18 06:06:20.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.814 -07 000000626 INF: FPGA: Recv ZSGSRD 36348
17-03-18 06:06:20.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.824 -07 000000579 INF: FPGA: Recv ZSGSRD 36355
17-03-18 06:06:20.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36355
17-03-18 06:06:20.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.844 -07 000000626 INF: FPGA: Recv ZSGSRD 36362
17-03-18 06:06:20.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36354
17-03-18 06:06:20.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.864 -07 000000461 INF: FPGA: Recv ZSGSRD 36360
17-03-18 06:06:20.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:20.874 -07 000000626 INF: FPGA: Recv ZSGSRD 36360
17-03-18 06:06:20.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.884 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:20.884 -07 000000626 INF: FPGA: Recv ZPIEZORD 32401
17-03-18 06:06:20.894 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.7 V.
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36356 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36355 (-173.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36348 (-172.9 uncal um), Max = 36366 (-173.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36356, posNoise = 10, negNoise = 8
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: After move to -0.173880, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:06:20.894 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:20.944 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:06:20.944 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:20.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:20.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:20.944 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:20.944 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:20.944 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:20.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:20.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:06:20.944 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:20.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:20.954 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:20.964 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:06:20.964 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:06:20.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:21.014 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:21.314 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:21.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:21.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:21.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:21.354 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:21.354 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:21.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:06:21.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:06:21.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:21.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:21.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:06:21.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:21.454 -07 000000592 INF: Autofocus start
17-03-18 06:06:21.454 -07 000000592 INF: MeasureProfile start
17-03-18 06:06:21.454 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:21.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:21.464 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:21.464 -07 000000592 INF: MeasureProfile done
17-03-18 06:06:21.464 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:06:21.464 -07 000000592 INF: Autofocus finished
17-03-18 06:06:21.664 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:21.664 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:21.664 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173882008636996. ----------
17-03-18 06:06:21.664 -07 000000610 INF: Cycle	145	Tile	14	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:21.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36498, sync = True, waitForSettling = True)
17-03-18 06:06:21.664 -07 000000610 INF: Z Motor: Moving to -0.167077 mm, started at -0.173882 mm, distance = 6.80 um
17-03-18 06:06:21.664 -07 000000610 INF: FPGA: Xmit ZDACW 36498\n [Z Motor]
17-03-18 06:06:21.674 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:06:21.674 -07 000000610 INF: FPGA: 'ZDACW 36498' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 06:06:21.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:21.674 -07 000000382 INF: FPGA: Recv ZDACR 36498
17-03-18 06:06:21.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:21.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:21.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:21.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:21.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35295
17-03-18 06:06:21.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:21.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.844 -07 000000382 INF: FPGA: Recv ZSGSRD 35300
17-03-18 06:06:21.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.854 -07 000000512 INF: FPGA: Recv ZSGSRD 35296
17-03-18 06:06:21.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.864 -07 000000585 INF: FPGA: Recv ZSGSRD 35295
17-03-18 06:06:21.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35302
17-03-18 06:06:21.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.884 -07 000000592 INF: FPGA: Recv ZSGSRD 35297
17-03-18 06:06:21.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.894 -07 000000382 INF: FPGA: Recv ZSGSRD 35298
17-03-18 06:06:21.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.904 -07 000000447 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:06:21.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.914 -07 000000512 INF: FPGA: Recv ZSGSRD 35299
17-03-18 06:06:21.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:21.924 -07 000000592 INF: FPGA: Recv ZSGSRD 35300
17-03-18 06:06:21.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:21.934 -07 000000585 INF: FPGA: Recv ZPIEZORD 30990
17-03-18 06:06:21.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:21.944 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.5 V.
17-03-18 06:06:21.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35297 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35298 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35292 (-166.2 uncal um), Max = 35302 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:06:21.944 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35297, posNoise = 5, negNoise = 5
17-03-18 06:06:21.944 -07 000000610 INF: Z Motor: After move to -0.167077, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:21.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 06:06:21.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:21.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:21.944 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:21.944 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:21.944 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:21.944 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:21.944 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:21.944 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:21.944 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:21.944 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:21.944 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:06:21.944 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:21.954 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:21.954 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:21.954 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:21.954 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:21.954 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:06:21.954 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:06:21.964 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:06:21.964 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:06:21.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36675 150\n [Camera]
17-03-18 06:06:22.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:22.314 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.030322,
17-03-18 06:06:22.614 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:22.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:22.614 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:22.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:22.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:22.614 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:22.614 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:22.614 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:22.624 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:22.624 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:22.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36675 837
17-03-18 06:06:22.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:23.004 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:06:23.004 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:06:23.004 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:23.004 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:06:23.004 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:06:23.004 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:23.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:23.004 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:06:23.014 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:23.014 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:06:23.174 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:23.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:23.174 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:23.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:23.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:23.174 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:23.184 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:23.184 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:06:23.184 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:23.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:06:23.364 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:23.364 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:23.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36675 150' command took 2 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-18 06:06:23.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:23.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167078767978871. ------
17-03-18 06:06:23.374 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:23.374 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17375 mm
17-03-18 06:06:23.374 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:23.374 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:06:23.374 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37956, sync = True, waitForSettling = False)
17-03-18 06:06:23.374 -07 000000447 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:06:23.374 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:23.374 -07 000000592 INF: Z Motor: Moving to -0.173751 mm, started at -0.167079 mm, distance = -6.67 um
17-03-18 06:06:23.494 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 06:06:23.494 -07 000000592 INF: FPGA: Xmit ZDACW 37956\n [Z Motor]
17-03-18 06:06:23.504 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:23.504 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:06:23.504 -07 000000592 INF: FPGA: 'ZDACW 37956' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 06:06:23.504 -07 000000626 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:06:23.514 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 06:06:23.514 -07 000000447 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:23.514 -07 000000447 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:23.514 -07 000000447 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:06:23.514 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:23.524 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:23.524 -07 000000626 INF: FPGA: Recv ZDACR 37956
17-03-18 06:06:23.534 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:23.534 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:23.534 -07 000000592 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-18 06:06:23.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:06:23.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:06:23.574 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:23.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:06:23.574 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:06:23.574 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:23.574 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:23.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:06:23.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:23.584 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:06:23.714 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:23.714 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 215 ms overall
17-03-18 06:06:23.914 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:06:23.914 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 06:06:23.964 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:23.964 -07 000000592 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:06:23.974 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:23.974 -07 000000447 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:23.974 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:06:23.974 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 06:06:24.924 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:24.924 -07 000000512 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:06:24.934 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:24.934 -07 000000447 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:24.964 -07 000000447 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:24.964 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:24.964 -07 000000447 INF: Y Motor: Moved to 71.5176 after 1588 ms (table move)
17-03-18 06:06:24.964 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173751 mm (DAC = 37956)
17-03-18 06:06:24.964 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:24.964 -07 000000447 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:06:24.974 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:24.974 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:24.974 -07 000000447 INF: FPGA: Recv ZSGSRD 36332
17-03-18 06:06:24.984 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:24.984 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:24.984 -07 000000502 INF: FPGA: Recv ZSGSRD 36330
17-03-18 06:06:24.994 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:24.994 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:24.994 -07 000000447 INF: FPGA: Recv ZSGSRD 36336
17-03-18 06:06:25.004 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.004 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.004 -07 000000502 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:06:25.014 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.014 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.014 -07 000000447 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:06:25.024 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.024 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.024 -07 000000502 INF: FPGA: Recv ZSGSRD 36344
17-03-18 06:06:25.034 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.034 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.034 -07 000000502 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:06:25.044 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.044 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.044 -07 000000502 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:06:25.054 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.054 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:25.054 -07 000000502 INF: FPGA: Recv ZSGSRD 36334
17-03-18 06:06:25.064 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.064 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:25.064 -07 000000502 INF: FPGA: Recv ZPIEZORD 32424
17-03-18 06:06:25.074 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.7 V.
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36336 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36330 (-172.8 uncal um), Max = 36344 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36336, posNoise = 8, negNoise = 6
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: After move to -0.173751, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: Settle wait time = 1590 ms, measure time = 105 ms (allowed 150 ms), total time = 1695 ms
17-03-18 06:06:25.074 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:25.124 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1747 ms
17-03-18 06:06:25.124 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:25.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:25.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:25.124 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:25.124 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:25.124 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:25.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:25.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:06:25.124 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:25.134 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:25.134 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:25.134 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:06:25.144 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:06:25.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:25.184 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:25.484 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:25.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:25.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:25.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:25.524 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:25.524 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:25.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:06:25.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:06:25.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:25.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:06:25.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:06:25.624 -07 000000447 INF: Autofocus start
17-03-18 06:06:25.624 -07 000000447 INF: MeasureProfile start
17-03-18 06:06:25.624 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:25.624 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:25.634 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:25.634 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:25.634 -07 000000447 INF: MeasureProfile done
17-03-18 06:06:25.634 -07 000000447 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:06:25.634 -07 000000447 INF: Autofocus finished
17-03-18 06:06:25.834 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:25.834 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:06:25.844 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173753524394161. ----------
17-03-18 06:06:25.844 -07 000000610 INF: Cycle	145	Tile	15	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:25.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36488, sync = True, waitForSettling = True)
17-03-18 06:06:25.844 -07 000000610 INF: Z Motor: Moving to -0.167031 mm, started at -0.173754 mm, distance = 6.72 um
17-03-18 06:06:25.844 -07 000000610 INF: FPGA: Xmit ZDACW 36488\n [Z Motor]
17-03-18 06:06:25.844 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:06:25.854 -07 000000610 INF: FPGA: 'ZDACW 36488' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:25.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:25.854 -07 000000585 INF: FPGA: Recv ZDACR 36488
17-03-18 06:06:25.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:25.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:26.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.014 -07 000000512 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:06:26.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:26.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.024 -07 000000585 INF: FPGA: Recv ZSGSRD 35289
17-03-18 06:06:26.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.034 -07 000000585 INF: FPGA: Recv ZSGSRD 35286
17-03-18 06:06:26.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.044 -07 000000585 INF: FPGA: Recv ZSGSRD 35287
17-03-18 06:06:26.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.054 -07 000000592 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:06:26.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.064 -07 000000569 INF: FPGA: Recv ZSGSRD 35296
17-03-18 06:06:26.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.074 -07 000000585 INF: FPGA: Recv ZSGSRD 35293
17-03-18 06:06:26.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.084 -07 000000585 INF: FPGA: Recv ZSGSRD 35288
17-03-18 06:06:26.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.094 -07 000000585 INF: FPGA: Recv ZSGSRD 35288
17-03-18 06:06:26.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:26.104 -07 000000585 INF: FPGA: Recv ZSGSRD 35290
17-03-18 06:06:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:26.114 -07 000000447 INF: FPGA: Recv ZPIEZORD 31009
17-03-18 06:06:26.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:26.124 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.4 V.
17-03-18 06:06:26.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35289 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35296 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:06:26.124 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35289, posNoise = 7, negNoise = 5
17-03-18 06:06:26.124 -07 000000610 INF: Z Motor: After move to -0.167031, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:26.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:06:26.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:26.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:26.124 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:26.124 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:26.124 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:26.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:26.124 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:26.124 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:26.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:26.124 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:26.124 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:26.124 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:26.134 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:26.134 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:26.134 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:06:26.134 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:26.144 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:06:26.144 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:06:26.144 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:06:26.144 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:06:26.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36665 150\n [Camera]
17-03-18 06:06:26.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:26.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:26.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:26.804 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:26.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:26.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:26.804 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:26.804 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:26.804 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:26.804 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:26.804 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:26.824 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:26.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:26.994 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36665 837
17-03-18 06:06:27.144 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:27.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:06:27.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:06:27.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:27.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:06:27.194 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:06:27.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:27.194 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:27.194 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:06:27.194 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:27.204 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:06:27.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:27.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:27.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:27.364 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:27.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:06:27.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:27.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:27.364 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:27.364 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:27.364 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2335576936, 0x0, 418435064) start.
17-03-18 06:06:27.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:06:27.554 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:27.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36665 150' command took 2 ms to send, 1392 ms to get response, and 1404 ms overall
17-03-18 06:06:27.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:27.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.167027374281737. ------
17-03-18 06:06:27.554 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17356 mm
17-03-18 06:06:27.554 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:27.554 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:27.564 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:06:27.564 -07 000000437 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:06:27.564 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37914, sync = True, waitForSettling = False)
17-03-18 06:06:27.564 -07 000000447 INF: Z Motor: Moving to -0.173559 mm, started at -0.167027 mm, distance = -6.53 um
17-03-18 06:06:27.564 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:27.564 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:06:27.564 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:27.564 -07 000000461 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:06:27.574 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:27.574 -07 000000437 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:27.574 -07 000000437 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:27.574 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:06:27.574 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:27.584 -07 000000447 INF: FPGA: Xmit ZDACW 37914\n [Z Motor]
17-03-18 06:06:27.584 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:06:27.594 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:27.594 -07 000000447 INF: FPGA: 'ZDACW 37914' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:06:27.604 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:27.604 -07 000000424 INF: FPGA: Recv ZDACR 37914
17-03-18 06:06:27.614 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:06:27.614 -07 000000447 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:06:27.674 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.042558,
17-03-18 06:06:27.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:06:27.764 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:06:27.764 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:27.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2335576936, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:06:27.764 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:06:27.764 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:27.764 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:27.774 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:06:27.774 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:06:27.774 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:27.774 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 210 ms overall
17-03-18 06:06:27.774 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:06:27.964 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:06:27.964 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:06:28.014 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:28.024 -07 000000629 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:06:28.034 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:28.034 -07 000000437 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:28.034 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:06:28.034 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 06:06:28.984 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:28.984 -07 000000382 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:06:28.994 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:28.994 -07 000000437 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:29.024 -07 000000437 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:29.024 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:29.024 -07 000000437 INF: Y Motor: Moved to 72.3481 after 1460 ms (table move)
17-03-18 06:06:29.024 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173559 mm (DAC = 37914)
17-03-18 06:06:29.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36315
17-03-18 06:06:29.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:06:29.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.034 -07 000000461 INF: FPGA: Recv ZSGSRD 36306
17-03-18 06:06:29.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.044 -07 000000437 INF: FPGA: Recv ZSGSRD 36305
17-03-18 06:06:29.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.054 -07 000000447 INF: FPGA: Recv ZSGSRD 36302
17-03-18 06:06:29.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:29.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.064 -07 000000585 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:06:29.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.074 -07 000000592 INF: FPGA: Recv ZSGSRD 36310
17-03-18 06:06:29.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.084 -07 000000461 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:06:29.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.094 -07 000000437 INF: FPGA: Recv ZSGSRD 36307
17-03-18 06:06:29.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.104 -07 000000437 INF: FPGA: Recv ZSGSRD 36308
17-03-18 06:06:29.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:29.114 -07 000000437 INF: FPGA: Recv ZSGSRD 36304
17-03-18 06:06:29.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.124 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:29.124 -07 000000447 INF: FPGA: Recv ZPIEZORD 32378
17-03-18 06:06:29.134 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.7 V.
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36306 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36306 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36302 (-172.7 uncal um), Max = 36315 (-172.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36306, posNoise = 9, negNoise = 4
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: After move to -0.173559, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:06:29.134 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:29.184 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:06:29.184 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:29.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:29.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:29.184 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:29.184 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:29.184 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:29.184 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:29.184 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:29.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:29.194 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:29.194 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:29.194 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:06:29.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:06:29.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:29.244 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:29.544 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:29.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:29.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:29.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370999200, 0x0, 559484976) start.
17-03-18 06:06:29.584 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:29.584 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:29.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:06:29.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370999200, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:06:29.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:29.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:06:29.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:06:29.684 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:29.684 -07 000000437 INF: Autofocus start
17-03-18 06:06:29.684 -07 000000437 INF: MeasureProfile start
17-03-18 06:06:29.684 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:29.694 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:29.694 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:29.694 -07 000000437 INF: MeasureProfile done
17-03-18 06:06:29.694 -07 000000437 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:06:29.694 -07 000000437 INF: Autofocus finished
17-03-18 06:06:29.894 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:29.894 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:29.894 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173560798029908. ----------
17-03-18 06:06:29.894 -07 000000610 INF: Cycle	145	Tile	16	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:29.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36411, sync = True, waitForSettling = True)
17-03-18 06:06:29.904 -07 000000610 INF: Z Motor: Moving to -0.166679 mm, started at -0.173561 mm, distance = 6.88 um
17-03-18 06:06:29.904 -07 000000610 INF: FPGA: Xmit ZDACW 36411\n [Z Motor]
17-03-18 06:06:29.904 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:06:29.914 -07 000000610 INF: FPGA: 'ZDACW 36411' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:29.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:29.914 -07 000000569 INF: FPGA: Recv ZDACR 36411
17-03-18 06:06:29.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:29.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:30.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.074 -07 000000569 INF: FPGA: Recv ZSGSRD 35233
17-03-18 06:06:30.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.084 -07 000000424 INF: FPGA: Recv ZSGSRD 35237
17-03-18 06:06:30.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35232
17-03-18 06:06:30.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.104 -07 000000447 INF: FPGA: Recv ZSGSRD 35234
17-03-18 06:06:30.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35239
17-03-18 06:06:30.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.124 -07 000000447 INF: FPGA: Recv ZSGSRD 35239
17-03-18 06:06:30.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35231
17-03-18 06:06:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.174 -07 000000569 INF: FPGA: Recv ZSGSRD 35232
17-03-18 06:06:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:06:30.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.204 -07 000000569 INF: FPGA: Recv ZSGSRD 35238
17-03-18 06:06:30.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:30.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:30.214 -07 000000569 INF: FPGA: Recv ZSGSRD 35238
17-03-18 06:06:30.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:30.224 -07 000000447 INF: FPGA: Recv ZPIEZORD 30932
17-03-18 06:06:30.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:30.234 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.5 V.
17-03-18 06:06:30.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35235 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35231 (-165.8 uncal um), Max = 35239 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:30.234 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35235, posNoise = 4, negNoise = 4
17-03-18 06:06:30.234 -07 000000610 INF: Z Motor: After move to -0.166679, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:30.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 06:06:30.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:30.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:30.234 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:30.234 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:30.234 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:30.234 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:30.234 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:30.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:30.234 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:30.234 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:30.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:30.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:30.244 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:30.244 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:30.244 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:06:30.244 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:30.254 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:06:30.254 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:06:30.254 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:06:30.254 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:06:30.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36588 150\n [Camera]
17-03-18 06:06:30.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:30.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:30.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:30.904 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:30.904 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:30.904 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 06:06:30.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:30.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:30.904 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:30.904 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:30.904 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:06:31.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36588 837
17-03-18 06:06:31.244 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:31.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:06:31.304 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:06:31.304 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:31.304 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:06:31.304 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:06:31.304 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:31.304 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:31.304 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:06:31.304 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:31.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:06:31.464 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:31.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:31.464 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:31.464 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:31.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:06:31.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:31.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:31.464 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:31.464 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:31.464 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:06:31.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:31.654 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:31.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36588 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:06:31.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:31.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166680466826082. ------
17-03-18 06:06:31.664 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:31.664 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17315 mm
17-03-18 06:06:31.664 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:31.664 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:31.664 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37825, sync = True, waitForSettling = False)
17-03-18 06:06:31.664 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:06:31.664 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:06:31.664 -07 000000569 INF: Z Motor: Moving to -0.173152 mm, started at -0.166680 mm, distance = -6.47 um
17-03-18 06:06:31.674 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:31.674 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:31.674 -07 000000382 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:06:31.794 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:31.794 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 06:06:31.794 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:31.804 -07 000000569 INF: FPGA: Xmit ZDACW 37825\n [Z Motor]
17-03-18 06:06:31.804 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:06:31.804 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:31.804 -07 000000502 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:06:31.814 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:31.814 -07 000000569 INF: FPGA: 'ZDACW 37825' command took 0 ms to send, 0 ms to get response, and 142 ms overall
17-03-18 06:06:31.824 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:31.824 -07 000000382 INF: FPGA: Recv ZDACR 37825
17-03-18 06:06:31.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:31.834 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:06:31.834 -07 000000569 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 06:06:31.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:06:31.874 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:06:31.874 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:31.874 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:06:31.874 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:06:31.874 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:31.874 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:31.874 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:06:31.874 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:06:31.884 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:06:32.004 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:32.004 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 331 ms overall
17-03-18 06:06:32.184 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:06:32.184 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 06:06:32.234 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:32.244 -07 000000424 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:06:32.244 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:32.244 -07 000000502 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:32.244 -07 000000502 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:06:32.244 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.205 mm/sec
17-03-18 06:06:33.034 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.007176,
17-03-18 06:06:33.194 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:33.194 -07 000000447 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:06:33.204 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.204 -07 000000502 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:33.234 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:33.234 -07 000000502 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:33.234 -07 000000502 INF: Y Motor: Moved to 73.1748 after 1566 ms (table move)
17-03-18 06:06:33.234 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173152 mm (DAC = 37825)
17-03-18 06:06:33.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.244 -07 000000447 INF: FPGA: Recv ZSGSRD 36250
17-03-18 06:06:33.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:06:33.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.244 -07 000000382 INF: FPGA: Recv ZSGSRD 36244
17-03-18 06:06:33.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.254 -07 000000438 INF: FPGA: Recv ZSGSRD 36237
17-03-18 06:06:33.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.264 -07 000000382 INF: FPGA: Recv ZSGSRD 36245
17-03-18 06:06:33.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.274 -07 000000629 INF: FPGA: Recv ZSGSRD 36242
17-03-18 06:06:33.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36239
17-03-18 06:06:33.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.294 -07 000000438 INF: FPGA: Recv ZSGSRD 36240
17-03-18 06:06:33.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.304 -07 000000581 INF: FPGA: Recv ZSGSRD 36243
17-03-18 06:06:33.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.314 -07 000000592 INF: FPGA: Recv ZSGSRD 36245
17-03-18 06:06:33.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:33.324 -07 000000424 INF: FPGA: Recv ZSGSRD 36237
17-03-18 06:06:33.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.334 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:33.334 -07 000000424 INF: FPGA: Recv ZPIEZORD 32309
17-03-18 06:06:33.344 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.7 V.
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36242 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36242 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36237 (-172.2 uncal um), Max = 36250 (-172.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36242, posNoise = 8, negNoise = 5
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: After move to -0.173152, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: Settle wait time = 1569 ms, measure time = 103 ms (allowed 150 ms), total time = 1672 ms
17-03-18 06:06:33.344 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:33.394 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 06:06:33.394 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:33.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:33.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:33.404 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:33.404 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:33.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:33.404 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:33.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:33.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:33.414 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:33.414 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:33.424 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:06:33.424 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:06:33.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:33.474 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:33.764 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:33.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:33.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:33.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:33.804 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:33.804 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:33.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:06:33.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:06:33.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:33.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:33.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:06:33.914 -07 000000424 INF: Autofocus start
17-03-18 06:06:33.914 -07 000000424 INF: MeasureProfile start
17-03-18 06:06:33.914 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:33.914 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:33.924 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:33.924 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:33.924 -07 000000424 INF: MeasureProfile done
17-03-18 06:06:33.924 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:06:33.924 -07 000000424 INF: Autofocus finished
17-03-18 06:06:34.124 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:34.124 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:34.124 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173149648452836. ----------
17-03-18 06:06:34.124 -07 000000610 INF: Cycle	145	Tile	17	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:34.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36322, sync = True, waitForSettling = True)
17-03-18 06:06:34.134 -07 000000610 INF: Z Motor: Moving to -0.166271 mm, started at -0.173150 mm, distance = 6.88 um
17-03-18 06:06:34.134 -07 000000610 INF: FPGA: Xmit ZDACW 36322\n [Z Motor]
17-03-18 06:06:34.134 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:06:34.144 -07 000000610 INF: FPGA: 'ZDACW 36322' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:34.144 -07 000000606 INF: FPGA: Recv ZDACR 36322
17-03-18 06:06:34.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.304 -07 000000424 INF: FPGA: Recv ZSGSRD 35170
17-03-18 06:06:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.314 -07 000000424 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:06:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.324 -07 000000382 INF: FPGA: Recv ZSGSRD 35177
17-03-18 06:06:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35177
17-03-18 06:06:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.344 -07 000000382 INF: FPGA: Recv ZSGSRD 35175
17-03-18 06:06:34.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.354 -07 000000382 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:06:34.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35175
17-03-18 06:06:34.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35171
17-03-18 06:06:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.384 -07 000000382 INF: FPGA: Recv ZSGSRD 35171
17-03-18 06:06:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:34.394 -07 000000382 INF: FPGA: Recv ZSGSRD 35177
17-03-18 06:06:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:34.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:34.404 -07 000000606 INF: FPGA: Recv ZPIEZORD 30883
17-03-18 06:06:34.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:34.414 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.4 V.
17-03-18 06:06:34.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35175 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35176 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35170 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:06:34.414 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35175, posNoise = 3, negNoise = 5
17-03-18 06:06:34.414 -07 000000610 INF: Z Motor: After move to -0.166271, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:34.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:06:34.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:34.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:34.414 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:34.414 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:34.414 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:34.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:34.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:06:34.414 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:34.414 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:34.414 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:34.414 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:34.414 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:34.414 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:34.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:34.424 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:06:34.424 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:34.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:06:34.434 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:06:34.434 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:06:34.434 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:06:34.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36499 150\n [Camera]
17-03-18 06:06:34.634 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:35.084 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:06:35.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:06:35.084 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:35.094 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:06:35.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:06:35.094 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:35.094 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:35.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:35.094 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:35.094 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:06:35.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36499 837
17-03-18 06:06:35.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:35.494 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:06:35.494 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:06:35.494 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:35.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:06:35.494 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:06:35.494 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:35.494 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:35.494 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:06:35.494 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:35.504 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:06:35.644 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:35.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:35.644 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:35.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:35.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:35.644 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:35.654 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:35.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:06:35.654 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:35.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) start.
17-03-18 06:06:35.834 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:06:35.834 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:35.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36499 150' command took 2 ms to send, 1395 ms to get response, and 1403 ms overall
17-03-18 06:06:35.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:35.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166295014097577. ------
17-03-18 06:06:35.964 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:35.964 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17219 mm
17-03-18 06:06:35.964 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:35.964 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:06:35.964 -07 000000437 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:06:35.964 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37614, sync = True, waitForSettling = False)
17-03-18 06:06:35.964 -07 000000424 INF: Z Motor: Moving to -0.172186 mm, started at -0.166295 mm, distance = -5.89 um
17-03-18 06:06:35.974 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:35.984 -07 000000424 INF: FPGA: Xmit ZDACW 37614\n [Z Motor]
17-03-18 06:06:36.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:06:36.034 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:06:36.034 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:36.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:36.044 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:06:36.044 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:06:36.044 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:36.044 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:06:36.054 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:36.054 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:06:36.054 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:36.054 -07 000000579 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:06:36.054 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:06:36.054 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 88 ms to get response, and 96 ms overall
17-03-18 06:06:36.054 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 78 ms to get response, and 94 ms overall
17-03-18 06:06:36.054 -07 000000437 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:36.054 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:36.054 -07 000000424 INF: FPGA: 'ZDACW 37614' command took 0 ms to send, 68 ms to get response, and 93 ms overall
17-03-18 06:06:36.064 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:36.064 -07 000000437 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:36.064 -07 000000437 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:06:36.064 -07 000000579 INF: FPGA: Recv ZDACR 37614
17-03-18 06:06:36.074 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:36.074 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:36.074 -07 000000424 INF: Z Motor: MoveAbsStepped took 105 ms (did NOT wait for settling yet))
17-03-18 06:06:36.264 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:36.264 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-18 06:06:36.444 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:06:36.444 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:06:36.484 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:36.494 -07 000000461 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:06:36.494 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:36.494 -07 000000437 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:36.494 -07 000000437 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:06:36.494 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.848 mm, average velocity = 2.208 mm/sec
17-03-18 06:06:36.824 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:37.444 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:37.444 -07 000000579 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:06:37.454 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:37.454 -07 000000437 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:37.474 -07 000000437 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:37.474 -07 000000437 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:37.474 -07 000000437 INF: Y Motor: Moved to 74.0068 after 1511 ms (table move)
17-03-18 06:06:37.474 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172186 mm (DAC = 37614)
17-03-18 06:06:37.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.314 -07 000000437 INF: FPGA: Recv ZSGSRD 36093
17-03-18 06:06:38.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 839 ms to get response, and 840 ms overall
17-03-18 06:06:38.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.324 -07 000000579 INF: FPGA: Recv ZSGSRD 36100
17-03-18 06:06:38.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:38.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.334 -07 000000579 INF: FPGA: Recv ZSGSRD 36094
17-03-18 06:06:38.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.344 -07 000000461 INF: FPGA: Recv ZSGSRD 36091
17-03-18 06:06:38.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.354 -07 000000461 INF: FPGA: Recv ZSGSRD 36095
17-03-18 06:06:38.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.364 -07 000000585 INF: FPGA: Recv ZSGSRD 36089
17-03-18 06:06:38.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.374 -07 000000461 INF: FPGA: Recv ZSGSRD 36095
17-03-18 06:06:38.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.384 -07 000000461 INF: FPGA: Recv ZSGSRD 36095
17-03-18 06:06:38.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.394 -07 000000461 INF: FPGA: Recv ZSGSRD 36092
17-03-18 06:06:38.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:38.404 -07 000000585 INF: FPGA: Recv ZSGSRD 36089
17-03-18 06:06:38.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.414 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:38.414 -07 000000437 INF: FPGA: Recv ZPIEZORD 32124
17-03-18 06:06:38.424 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.8 V.
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36093 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36089 (-171.3 uncal um), Max = 36100 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36093, posNoise = 7, negNoise = 4
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: After move to -0.172186, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: Settle wait time = 1514 ms, measure time = 942 ms (allowed 150 ms), total time = 2456 ms
17-03-18 06:06:38.424 -07 000000382 INF: Z Motor: Warning: Actual position measuring time = 942 ms, longer than max expected time of 150 ms
17-03-18 06:06:38.424 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2459 ms
17-03-18 06:06:38.424 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:38.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:38.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:38.424 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:38.424 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:38.424 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:38.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:38.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:38.424 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:38.434 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:38.434 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:38.434 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:06:38.434 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:06:38.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:38.484 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:38.624 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.012614,
17-03-18 06:06:38.784 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:38.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:38.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:38.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:38.824 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:38.824 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:38.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:06:38.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:06:38.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:38.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:38.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:06:38.924 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:38.924 -07 000000382 INF: Autofocus start
17-03-18 06:06:38.924 -07 000000382 INF: MeasureProfile start
17-03-18 06:06:38.924 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:38.934 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:38.934 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:38.934 -07 000000382 INF: MeasureProfile done
17-03-18 06:06:38.934 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:06:38.934 -07 000000382 INF: Autofocus finished
17-03-18 06:06:39.134 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:39.134 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:06:39.134 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172192440843713. ----------
17-03-18 06:06:39.144 -07 000000610 INF: Cycle	145	Tile	18	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:39.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36111, sync = True, waitForSettling = True)
17-03-18 06:06:39.144 -07 000000610 INF: Z Motor: Moving to -0.165306 mm, started at -0.172192 mm, distance = 6.89 um
17-03-18 06:06:39.144 -07 000000610 INF: FPGA: Xmit ZDACW 36111\n [Z Motor]
17-03-18 06:06:39.144 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:06:39.154 -07 000000610 INF: FPGA: 'ZDACW 36111' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:06:39.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:39.154 -07 000000585 INF: FPGA: Recv ZDACR 36111
17-03-18 06:06:39.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35024
17-03-18 06:06:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.324 -07 000000585 INF: FPGA: Recv ZSGSRD 35024
17-03-18 06:06:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.334 -07 000000585 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:06:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.344 -07 000000585 INF: FPGA: Recv ZSGSRD 35022
17-03-18 06:06:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.354 -07 000000461 INF: FPGA: Recv ZSGSRD 35021
17-03-18 06:06:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35023
17-03-18 06:06:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.374 -07 000000626 INF: FPGA: Recv ZSGSRD 35029
17-03-18 06:06:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.384 -07 000000382 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:06:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.394 -07 000000461 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:06:39.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:39.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35019
17-03-18 06:06:39.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:39.414 -07 000000382 INF: FPGA: Recv ZPIEZORD 30705
17-03-18 06:06:39.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:39.424 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.5 V.
17-03-18 06:06:39.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35022 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35022 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35019 (-164.4 uncal um), Max = 35029 (-164.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:06:39.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35022, posNoise = 7, negNoise = 3
17-03-18 06:06:39.424 -07 000000610 INF: Z Motor: After move to -0.165306, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:39.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:06:39.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:39.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:39.424 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:39.424 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:39.424 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:39.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:39.424 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:39.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:39.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:39.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:39.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:39.424 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:39.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:39.424 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:39.434 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:06:39.434 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:39.444 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:06:39.444 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:06:39.444 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:06:39.444 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:06:39.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36288 150\n [Camera]
17-03-18 06:06:39.644 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:40.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:40.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:40.104 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:40.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:40.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:40.104 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:40.104 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:40.104 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:40.114 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:40.114 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:06:40.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36288 837
17-03-18 06:06:40.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:40.484 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:06:40.484 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:06:40.484 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:40.484 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:40.494 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:06:40.494 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:06:40.494 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:40.494 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:06:40.494 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:40.494 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:06:40.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:40.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:40.664 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:40.664 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:40.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:06:40.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:40.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:40.664 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:40.664 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:40.664 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:06:40.854 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:06:40.854 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:40.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36288 150' command took 2 ms to send, 1393 ms to get response, and 1404 ms overall
17-03-18 06:06:40.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:06:40.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165312109639887. ------
17-03-18 06:06:40.854 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:40.854 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17160 mm
17-03-18 06:06:40.854 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:40.864 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = False)
17-03-18 06:06:40.864 -07 000000626 INF: Z Motor: Moving to -0.171600 mm, started at -0.165312 mm, distance = -6.29 um
17-03-18 06:06:40.864 -07 000000626 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 06:06:40.864 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:06:40.864 -07 000000585 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:06:40.884 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:41.064 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:06:41.064 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:06:41.064 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:41.074 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:06:41.074 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:06:41.074 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:41.074 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:06:41.074 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:06:41.074 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:06:41.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:06:41.084 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:41.084 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:06:41.084 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 228 ms overall
17-03-18 06:06:41.084 -07 000000569 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:06:41.084 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 224 ms overall
17-03-18 06:06:41.084 -07 000000585 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:41.094 -07 000000626 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 217 ms to get response, and 225 ms overall
17-03-18 06:06:41.094 -07 000000585 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:41.094 -07 000000585 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:06:41.104 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:41.104 -07 000000581 INF: FPGA: Recv ZDACR 37486
17-03-18 06:06:41.114 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:41.114 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:06:41.114 -07 000000626 INF: Z Motor: MoveAbsStepped took 247 ms (did NOT wait for settling yet))
17-03-18 06:06:41.124 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:41.314 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:41.314 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 06:06:42.314 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:06:42.314 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:42.314 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1180 ms to get response, and 1215 ms overall
17-03-18 06:06:42.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:42.344 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:42.344 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:06:42.354 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:42.354 -07 000000585 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:42.354 -07 000000585 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:06:42.354 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1215 ms, distance = 0.846 mm, average velocity = 0.696 mm/sec
17-03-18 06:06:43.304 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:43.304 -07 000000502 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:06:43.314 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:43.314 -07 000000585 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:43.334 -07 000000585 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:43.334 -07 000000585 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:43.334 -07 000000585 INF: Y Motor: Moved to 74.8306 after 2468 ms (table move)
17-03-18 06:06:43.334 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171600 mm (DAC = 37486)
17-03-18 06:06:43.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.334 -07 000000461 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:06:43.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:06:43.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.344 -07 000000502 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:06:43.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.354 -07 000000585 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:06:43.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:06:43.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:06:43.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.384 -07 000000502 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:06:43.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.394 -07 000000585 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:06:43.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:06:43.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:06:43.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:43.424 -07 000000585 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:06:43.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.434 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:43.434 -07 000000461 INF: FPGA: Recv ZPIEZORD 32019
17-03-18 06:06:43.444 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.8 V.
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36001 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35999 (-170.7 uncal um), Max = 36009 (-170.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 7, negNoise = 3
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: After move to -0.171600, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: Settle wait time = 2472 ms, measure time = 107 ms (allowed 150 ms), total time = 2579 ms
17-03-18 06:06:43.444 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:43.494 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2630 ms
17-03-18 06:06:43.494 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:43.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:43.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:43.494 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:43.494 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:43.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:43.494 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:43.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:43.494 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:43.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:43.504 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:43.514 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:06:43.514 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:06:43.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:43.564 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:43.864 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:43.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:43.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:43.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 06:06:43.904 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:43.904 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:43.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:06:43.984 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.997626,
17-03-18 06:06:43.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:06:43.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:43.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:06:43.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:06:44.004 -07 000000585 INF: Autofocus start
17-03-18 06:06:44.004 -07 000000585 INF: MeasureProfile start
17-03-18 06:06:44.014 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:44.014 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:44.014 -07 000000585 INF: MeasureProfile done
17-03-18 06:06:44.014 -07 000000585 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:06:44.014 -07 000000585 INF: Autofocus finished
17-03-18 06:06:44.024 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:06:44.034 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:44.234 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:44.234 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:06:44.234 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171607837538813. ----------
17-03-18 06:06:44.234 -07 000000610 INF: Cycle	145	Tile	19	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:44.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36019, sync = True, waitForSettling = True)
17-03-18 06:06:44.244 -07 000000610 INF: Z Motor: Moving to -0.164884 mm, started at -0.171608 mm, distance = 6.72 um
17-03-18 06:06:44.244 -07 000000610 INF: FPGA: Xmit ZDACW 36019\n [Z Motor]
17-03-18 06:06:44.244 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:06:44.254 -07 000000610 INF: FPGA: 'ZDACW 36019' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:44.254 -07 000000461 INF: FPGA: Recv ZDACR 36019
17-03-18 06:06:44.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:44.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.414 -07 000000447 INF: FPGA: Recv ZSGSRD 34962
17-03-18 06:06:44.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:44.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.424 -07 000000461 INF: FPGA: Recv ZSGSRD 34955
17-03-18 06:06:44.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.434 -07 000000585 INF: FPGA: Recv ZSGSRD 34952
17-03-18 06:06:44.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.444 -07 000000606 INF: FPGA: Recv ZSGSRD 34948
17-03-18 06:06:44.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.454 -07 000000629 INF: FPGA: Recv ZSGSRD 34960
17-03-18 06:06:44.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.464 -07 000000438 INF: FPGA: Recv ZSGSRD 34955
17-03-18 06:06:44.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.474 -07 000000585 INF: FPGA: Recv ZSGSRD 34958
17-03-18 06:06:44.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.484 -07 000000592 INF: FPGA: Recv ZSGSRD 34954
17-03-18 06:06:44.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.494 -07 000000629 INF: FPGA: Recv ZSGSRD 34956
17-03-18 06:06:44.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:44.504 -07 000000592 INF: FPGA: Recv ZSGSRD 34955
17-03-18 06:06:44.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:44.514 -07 000000585 INF: FPGA: Recv ZPIEZORD 30599
17-03-18 06:06:44.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:44.524 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.496 V. Piezo Error = -9.6 V.
17-03-18 06:06:44.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34956 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34955 (-164.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34948 (-164.0 uncal um), Max = 34962 (-164.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:06:44.524 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34956, posNoise = 6, negNoise = 8
17-03-18 06:06:44.524 -07 000000610 INF: Z Motor: After move to -0.164884, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:44.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:06:44.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:44.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:44.524 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:44.524 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:44.524 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:44.524 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:44.524 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:44.524 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:44.524 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:44.524 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:44.524 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:06:44.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:44.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:44.534 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:44.534 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:06:44.534 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:44.544 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:06:44.544 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:06:44.544 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:06:44.544 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:06:44.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36196 150\n [Camera]
17-03-18 06:06:44.744 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:45.204 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:45.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:45.204 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:45.204 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:45.204 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) start.
17-03-18 06:06:45.204 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:45.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:45.204 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:45.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:45.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:45.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36196 837
17-03-18 06:06:45.544 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:45.604 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1175865104, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:06:45.604 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:06:45.604 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:45.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:06:45.604 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:06:45.604 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:45.604 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:45.604 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:06:45.604 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:45.614 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:06:45.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:45.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:45.764 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:45.764 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:45.764 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:06:45.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:45.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:45.764 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:45.764 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:45.764 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 06:06:46.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:06:46.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:06:46.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:46.164 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:06:46.164 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:06:46.164 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:46.164 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:46.174 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:06:46.174 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:06:46.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:06:46.184 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:06:46.184 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:46.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36196 150' command took 2 ms to send, 1625 ms to get response, and 1636 ms overall
17-03-18 06:06:46.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:06:46.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:06:46.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:06:46.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:06:46.274 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:06:46.274 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:06:46.274 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 06:06:46.284 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:06:46.284 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:06:46.784 -07 000000447 INF: FPGA: Recv EMIN
17-03-18 06:06:46.784 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 499 ms to get response, and 509 ms overall
17-03-18 06:06:46.784 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:06:46.794 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 06:06:46.794 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:06:46.924 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:46.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:46.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:06:46.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164888111638531. ------
17-03-18 06:06:46.934 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:46.934 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 06:06:46.934 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:47.814 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:06:47.814 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:06:47.814 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:48.814 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:48.814 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:06:48.814 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1870 ms to get response, and 1876 ms overall
17-03-18 06:06:48.814 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-18 06:06:48.814 -07 000000424 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:48.814 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:48.814 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30430, sync = True, waitForSettling = False)
17-03-18 06:06:48.814 -07 000000437 INF: Z Motor: Moving to -0.139300 mm, started at -0.164888 mm, distance = 25.59 um
17-03-18 06:06:48.814 -07 000000424 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:06:48.814 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:06:48.824 -07 000000437 INF: FPGA: Xmit ZDACW 30430\n [Z Motor]
17-03-18 06:06:48.834 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:06:49.814 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:06:49.814 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:49.814 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-18 06:06:49.814 -07 000000437 INF: FPGA: 'ZDACW 30430' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-18 06:06:49.814 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:49.814 -07 000000382 INF: FPGA: Recv ZDACR 30430
17-03-18 06:06:49.824 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:49.824 -07 000000437 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-18 06:06:50.124 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.988112,
17-03-18 06:06:50.454 -07 000000382 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:06:50.454 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1641 ms overall
17-03-18 06:06:50.454 -07 000000424 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:06:50.454 -07 000000424 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:06:50.454 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.918 mm, average velocity = 9.085 mm/sec
17-03-18 06:06:51.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:51.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:53.304 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:53.304 -07 000000437 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:06:53.314 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:53.314 -07 000000424 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:53.354 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:53.354 -07 000000424 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:06:53.354 -07 000000424 INF: Y Motor: Moved to 59.9102 after 5543 ms
17-03-18 06:06:53.354 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139300 mm (DAC = 30430)
17-03-18 06:06:53.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.364 -07 000000512 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:06:53.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.374 -07 000000424 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:06:53.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.384 -07 000000512 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:06:53.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.394 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.394 -07 000000382 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:06:53.404 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.404 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.404 -07 000000579 INF: FPGA: Recv ZSGSRD 30973
17-03-18 06:06:53.414 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.414 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:06:53.424 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.424 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.424 -07 000000382 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:06:53.434 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30977
17-03-18 06:06:53.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.444 -07 000000382 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:06:53.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:53.454 -07 000000437 INF: FPGA: Recv ZSGSRD 30976
17-03-18 06:06:53.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.464 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:53.464 -07 000000424 INF: FPGA: Recv ZPIEZORD 26475
17-03-18 06:06:53.474 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.9 V.
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30975 (-138.5 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 30973 (-138.5 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 2, negNoise = 2
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: After move to -0.139300, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: Settle wait time = 4547 ms, measure time = 111 ms (allowed 150 ms), total time = 4658 ms
17-03-18 06:06:53.474 -07 000000447 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:53.514 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6575 ms
17-03-18 06:06:53.514 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:53.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:53.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:53.514 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:53.514 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:53.514 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:53.514 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:53.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:06:53.524 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:06:53.544 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 06:06:53.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:53.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:06:53.544 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:53.554 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:06:53.554 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 06:06:53.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:53.594 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:53.894 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:53.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:53.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:53.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:06:53.934 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:53.934 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:53.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:06:54.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 06:06:54.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:54.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:06:54.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 06:06:54.134 -07 000000424 INF: Image SNR check: start
17-03-18 06:06:54.134 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:54.134 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:54.144 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:54.144 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:54.144 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=120.21]
17-03-18 06:06:54.144 -07 000000424 INF: Autofocus start
17-03-18 06:06:54.144 -07 000000424 INF: MeasureProfile start
17-03-18 06:06:54.154 -07 000000424 INF: MeasureProfile done
17-03-18 06:06:54.154 -07 000000424 INF: X=11  Z correction [um]=0.02896596
17-03-18 06:06:54.154 -07 000000424 INF: Autofocus finished
17-03-18 06:06:54.344 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:54.344 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:54.344 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139313323102181. ----------
17-03-18 06:06:54.344 -07 000000610 INF: Cycle	145	Tile	1	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:54.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-18 06:06:54.354 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.139313 mm, distance = 6.79 um
17-03-18 06:06:54.354 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-18 06:06:54.354 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:06:54.364 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:54.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:54.364 -07 000000424 INF: FPGA: Recv ZDACR 28949
17-03-18 06:06:54.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:54.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.524 -07 000000447 INF: FPGA: Recv ZSGSRD 29921
17-03-18 06:06:54.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:54.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.534 -07 000000382 INF: FPGA: Recv ZSGSRD 29917
17-03-18 06:06:54.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.544 -07 000000447 INF: FPGA: Recv ZSGSRD 29915
17-03-18 06:06:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.554 -07 000000424 INF: FPGA: Recv ZSGSRD 29918
17-03-18 06:06:54.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.564 -07 000000579 INF: FPGA: Recv ZSGSRD 29923
17-03-18 06:06:54.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29918
17-03-18 06:06:54.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.584 -07 000000382 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:06:54.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.594 -07 000000382 INF: FPGA: Recv ZSGSRD 29921
17-03-18 06:06:54.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.604 -07 000000579 INF: FPGA: Recv ZSGSRD 29918
17-03-18 06:06:54.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:54.614 -07 000000382 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:06:54.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:54.624 -07 000000579 INF: FPGA: Recv ZPIEZORD 25300
17-03-18 06:06:54.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:54.634 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.1 V.
17-03-18 06:06:54.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29911 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:06:54.634 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 5, negNoise = 7
17-03-18 06:06:54.634 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:54.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:06:54.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:54.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:54.634 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:54.634 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:54.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:54.634 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:54.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:54.634 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:54.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:54.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:54.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:54.634 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:06:54.644 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:54.644 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:54.654 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:06:54.654 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:06:54.664 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:06:54.664 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:54.664 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:06:54.664 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:54.674 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:06:54.674 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 06:06:54.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29126 150\n [Camera]
17-03-18 06:06:54.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 199
17-03-18 06:06:55.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:55.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:55.334 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:55.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:55.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:55.344 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:55.344 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:55.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:06:55.354 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:55.354 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:06:55.484 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.999021,
17-03-18 06:06:55.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29126 837
17-03-18 06:06:55.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:55.724 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:06:55.724 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:06:55.724 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:55.724 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:55.734 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:06:55.734 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:06:55.734 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:55.734 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:55.734 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:06:55.734 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:06:55.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:55.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:55.894 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:55.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:55.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:55.904 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:55.904 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:55.904 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 06:06:56.024 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:56.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:06:56.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:06:56.094 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:06:56.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29126 150' command took 2 ms to send, 1403 ms to get response, and 1414 ms overall
17-03-18 06:06:56.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:06:56.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132522930868339. ------
17-03-18 06:06:56.094 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:56.094 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13894 mm
17-03-18 06:06:56.094 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:06:56.104 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:06:56.104 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30351, sync = True, waitForSettling = False)
17-03-18 06:06:56.104 -07 000000581 INF: Z Motor: Moving to -0.138938 mm, started at -0.132523 mm, distance = -6.42 um
17-03-18 06:06:56.104 -07 000000581 INF: FPGA: Xmit ZDACW 30351\n [Z Motor]
17-03-18 06:06:56.104 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:56.104 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:06:56.104 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:06:56.104 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:06:56.114 -07 000000581 INF: FPGA: 'ZDACW 30351' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:06:56.114 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:56.114 -07 000000447 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:06:56.124 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:06:56.124 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:06:56.124 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:56.124 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:06:56.124 -07 000000502 INF: Y Motor: Moving 1332 steps1
17-03-18 06:06:56.134 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:56.134 -07 000000424 INF: FPGA: Recv ZDACR 30351
17-03-18 06:06:56.144 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:06:56.144 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:06:56.144 -07 000000581 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:06:56.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:06:56.294 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:06:56.294 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:56.294 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:56.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:06:56.324 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:06:56.324 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 06:06:56.414 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:06:56.414 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:06:56.414 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:56.424 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:56.424 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:06:56.514 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:06:56.514 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:06:56.554 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:56.564 -07 000000606 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:06:56.564 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:06:56.564 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:56.564 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:06:56.564 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 06:06:56.824 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:06:56.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:06:57.514 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:06:57.514 -07 000000606 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:06:57.524 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:57.524 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:06:57.554 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:06:57.554 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:06:57.554 -07 000000502 INF: Y Motor: Moved to 60.7324 after 1453 ms (table move)
17-03-18 06:06:57.554 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138938 mm (DAC = 30351)
17-03-18 06:06:57.554 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.564 -07 000000447 INF: FPGA: Recv ZSGSRD 30913
17-03-18 06:06:57.564 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:06:57.564 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.564 -07 000000629 INF: FPGA: Recv ZSGSRD 30922
17-03-18 06:06:57.574 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.574 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.574 -07 000000626 INF: FPGA: Recv ZSGSRD 30909
17-03-18 06:06:57.584 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.584 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30913
17-03-18 06:06:57.594 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.594 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.594 -07 000000424 INF: FPGA: Recv ZSGSRD 30915
17-03-18 06:06:57.604 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.604 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.604 -07 000000626 INF: FPGA: Recv ZSGSRD 30914
17-03-18 06:06:57.614 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.614 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.614 -07 000000382 INF: FPGA: Recv ZSGSRD 30921
17-03-18 06:06:57.624 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.624 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.624 -07 000000447 INF: FPGA: Recv ZSGSRD 30917
17-03-18 06:06:57.634 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.634 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.634 -07 000000424 INF: FPGA: Recv ZSGSRD 30922
17-03-18 06:06:57.644 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.644 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:57.644 -07 000000502 INF: FPGA: Recv ZSGSRD 30921
17-03-18 06:06:57.654 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.654 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:57.654 -07 000000502 INF: FPGA: Recv ZPIEZORD 26660
17-03-18 06:06:57.664 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30917 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30909 (-138.1 uncal um), Max = 30922 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30917, posNoise = 5, negNoise = 8
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: After move to -0.138938, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:06:57.664 -07 000000585 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:06:57.714 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 06:06:57.714 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:06:57.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:57.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:57.714 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:57.714 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:57.714 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:06:57.714 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:57.714 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:57.714 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:06:57.724 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:57.724 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:06:57.734 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:06:57.734 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:06:57.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:06:57.784 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:06:58.074 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:06:58.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:06:58.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:06:58.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-18 06:06:58.114 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:06:58.114 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:06:58.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 06:06:58.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:06:58.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:58.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:06:58.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:06:58.224 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:06:58.224 -07 000000502 INF: Autofocus start
17-03-18 06:06:58.224 -07 000000502 INF: MeasureProfile start
17-03-18 06:06:58.224 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:06:58.234 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:06:58.234 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:06:58.234 -07 000000502 INF: MeasureProfile done
17-03-18 06:06:58.234 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:06:58.234 -07 000000502 INF: Autofocus finished
17-03-18 06:06:58.434 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:06:58.434 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:06:58.434 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138940718797959. ----------
17-03-18 06:06:58.434 -07 000000610 INF: Cycle	145	Tile	2	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:06:58.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28858, sync = True, waitForSettling = True)
17-03-18 06:06:58.444 -07 000000610 INF: Z Motor: Moving to -0.132103 mm, started at -0.138941 mm, distance = 6.84 um
17-03-18 06:06:58.444 -07 000000610 INF: FPGA: Xmit ZDACW 28858\n [Z Motor]
17-03-18 06:06:58.444 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:06:58.454 -07 000000610 INF: FPGA: 'ZDACW 28858' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:06:58.454 -07 000000585 INF: FPGA: Recv ZDACR 28858
17-03-18 06:06:58.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:06:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.614 -07 000000447 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:06:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:06:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.624 -07 000000502 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:06:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.634 -07 000000502 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:06:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.644 -07 000000585 INF: FPGA: Recv ZSGSRD 29856
17-03-18 06:06:58.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.654 -07 000000502 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:06:58.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:06:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.674 -07 000000585 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:06:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.684 -07 000000502 INF: FPGA: Recv ZSGSRD 29858
17-03-18 06:06:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.694 -07 000000585 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:06:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:06:58.704 -07 000000585 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:06:58.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:06:58.714 -07 000000502 INF: FPGA: Recv ZPIEZORD 25268
17-03-18 06:06:58.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:06:58.724 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.1 V.
17-03-18 06:06:58.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29853 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29858 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:06:58.724 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29853, posNoise = 5, negNoise = 4
17-03-18 06:06:58.724 -07 000000610 INF: Z Motor: After move to -0.132103, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:06:58.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:06:58.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:06:58.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:06:58.724 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:06:58.724 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:06:58.724 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:06:58.724 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:06:58.724 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:06:58.724 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:06:58.724 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:06:58.724 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:06:58.724 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:06:58.724 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:06:58.734 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:06:58.734 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:06:58.734 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:06:58.734 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:06:58.744 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:06:58.744 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:06:58.744 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:06:58.744 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:06:58.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29035 150\n [Camera]
17-03-18 06:06:58.954 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:06:59.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:06:59.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:06:59.404 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:59.404 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:06:59.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:06:59.404 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:59.404 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:59.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:06:59.404 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:59.404 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:06:59.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29035 837
17-03-18 06:06:59.744 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:06:59.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:06:59.794 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:06:59.794 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:59.804 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:06:59.804 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:59.804 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:06:59.804 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:06:59.804 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:06:59.804 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:06:59.814 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:06:59.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:06:59.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:06:59.964 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:06:59.964 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:06:59.964 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) start.
17-03-18 06:06:59.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:06:59.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:06:59.964 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:06:59.964 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:06:59.964 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:07:00.154 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:00.154 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:00.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29035 150' command took 2 ms to send, 1394 ms to get response, and 1404 ms overall
17-03-18 06:07:00.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:00.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132105357079125. ------
17-03-18 06:07:00.164 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:00.164 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13896 mm
17-03-18 06:07:00.164 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:00.164 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:00.164 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:07:00.164 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30356, sync = True, waitForSettling = False)
17-03-18 06:07:00.164 -07 000000437 INF: Z Motor: Moving to -0.138961 mm, started at -0.132105 mm, distance = -6.86 um
17-03-18 06:07:00.164 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:07:00.174 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:00.174 -07 000000437 INF: FPGA: Xmit ZDACW 30356\n [Z Motor]
17-03-18 06:07:00.174 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:07:00.184 -07 000000437 INF: FPGA: 'ZDACW 30356' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:07:00.184 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:00.184 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:07:00.194 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:00.194 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:07:00.194 -07 000000461 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:00.194 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:00.194 -07 000000461 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:07:00.204 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:00.204 -07 000000579 INF: FPGA: Recv ZDACR 30356
17-03-18 06:07:00.214 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:00.214 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:00.214 -07 000000437 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:07:00.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:07:00.364 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:07:00.364 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:00.364 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:07:00.374 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:07:00.374 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:00.374 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:00.374 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:00.374 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:07:00.384 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:07:00.394 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:00.394 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:07:00.594 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:07:00.594 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 402 ms overall
17-03-18 06:07:00.644 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:00.644 -07 000000585 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:07:00.654 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:00.654 -07 000000461 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:00.654 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:07:00.654 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.840 mm, average velocity = 2.090 mm/sec
17-03-18 06:07:00.844 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.004458,
17-03-18 06:07:01.604 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:01.604 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:07:01.614 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:01.614 -07 000000461 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:01.644 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:01.644 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:01.644 -07 000000461 INF: Y Motor: Moved to 61.5630 after 1476 ms (table move)
17-03-18 06:07:01.644 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138961 mm (DAC = 30356)
17-03-18 06:07:01.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.644 -07 000000585 INF: FPGA: Recv ZSGSRD 30929
17-03-18 06:07:01.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:01.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.654 -07 000000579 INF: FPGA: Recv ZSGSRD 30919
17-03-18 06:07:01.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.664 -07 000000438 INF: FPGA: Recv ZSGSRD 30927
17-03-18 06:07:01.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.674 -07 000000438 INF: FPGA: Recv ZSGSRD 30921
17-03-18 06:07:01.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.684 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.684 -07 000000438 INF: FPGA: Recv ZSGSRD 30911
17-03-18 06:07:01.694 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.694 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.694 -07 000000438 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:07:01.704 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.704 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.704 -07 000000438 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:07:01.714 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.714 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.714 -07 000000438 INF: FPGA: Recv ZSGSRD 30926
17-03-18 06:07:01.724 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.724 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.724 -07 000000438 INF: FPGA: Recv ZSGSRD 30924
17-03-18 06:07:01.734 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.734 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:01.734 -07 000000438 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:07:01.744 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.744 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:01.744 -07 000000438 INF: FPGA: Recv ZPIEZORD 26715
17-03-18 06:07:01.754 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.3 V.
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30911 (-138.1 uncal um), Max = 30929 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 7, negNoise = 11
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: After move to -0.138961, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: Settle wait time = 1479 ms, measure time = 105 ms (allowed 150 ms), total time = 1584 ms
17-03-18 06:07:01.754 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:01.804 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 06:07:01.804 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:01.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:01.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:01.804 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:01.804 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:01.814 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:01.814 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:01.814 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:01.814 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:01.814 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:01.814 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:01.824 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:07:01.824 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:07:01.824 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:01.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:01.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:01.874 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:02.174 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:02.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:02.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:02.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:02.214 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:02.214 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:02.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:07:02.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:07:02.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:02.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:02.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:07:02.324 -07 000000569 INF: Autofocus start
17-03-18 06:07:02.324 -07 000000569 INF: MeasureProfile start
17-03-18 06:07:02.324 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:02.344 -07 000000569 INF: MeasureProfile done
17-03-18 06:07:02.344 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:07:02.344 -07 000000569 INF: Autofocus finished
17-03-18 06:07:02.344 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:02.344 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 15 ms to get response, and 20 ms overall
17-03-18 06:07:02.344 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:02.544 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:02.544 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 06:07:02.554 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138972839858667. ----------
17-03-18 06:07:02.554 -07 000000610 INF: Cycle	145	Tile	3	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:02.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28851, sync = True, waitForSettling = True)
17-03-18 06:07:02.554 -07 000000610 INF: Z Motor: Moving to -0.132071 mm, started at -0.138973 mm, distance = 6.90 um
17-03-18 06:07:02.554 -07 000000610 INF: FPGA: Xmit ZDACW 28851\n [Z Motor]
17-03-18 06:07:02.564 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:07:02.564 -07 000000610 INF: FPGA: 'ZDACW 28851' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:07:02.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:02.574 -07 000000382 INF: FPGA: Recv ZDACR 28851
17-03-18 06:07:02.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:07:02.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:02.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.734 -07 000000438 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:07:02.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:02.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.744 -07 000000581 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:07:02.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.754 -07 000000569 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:07:02.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.764 -07 000000438 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:07:02.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.774 -07 000000382 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:07:02.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.784 -07 000000569 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:07:02.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.794 -07 000000438 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:07:02.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.804 -07 000000581 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:07:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.814 -07 000000569 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:07:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:02.824 -07 000000438 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:07:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:02.834 -07 000000438 INF: FPGA: Recv ZPIEZORD 25316
17-03-18 06:07:02.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:02.844 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.9 V.
17-03-18 06:07:02.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29847 (-131.3 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:07:02.844 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 2, negNoise = 3
17-03-18 06:07:02.844 -07 000000610 INF: Z Motor: After move to -0.132071, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:02.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 06:07:02.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:02.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:02.844 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:02.844 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:02.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:02.844 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:02.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:07:02.844 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:02.844 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:02.844 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:02.844 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:02.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:02.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:02.854 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:02.854 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:02.854 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:02.864 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:07:02.864 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:07:02.864 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:07:02.864 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:07:02.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29027 150\n [Camera]
17-03-18 06:07:03.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:03.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:03.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:03.514 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:03.514 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:03.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:07:03.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:03.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:03.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:03.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:03.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:07:03.704 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29027 837
17-03-18 06:07:03.854 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:03.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:07:03.894 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:07:03.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:03.894 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:07:03.894 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:07:03.894 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:03.904 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:07:03.904 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:07:03.904 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:07:03.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:07:04.074 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:04.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:04.074 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:04.074 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:04.074 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:07:04.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:04.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:04.074 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:04.074 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:04.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:07:04.264 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:04.264 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:04.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29027 150' command took 2 ms to send, 1396 ms to get response, and 1403 ms overall
17-03-18 06:07:04.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:04.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.1320860844427. ------
17-03-18 06:07:04.274 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:04.274 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13850 mm
17-03-18 06:07:04.274 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:04.274 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:04.274 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:07:04.274 -07 000000581 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:07:04.274 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30255, sync = True, waitForSettling = False)
17-03-18 06:07:04.274 -07 000000438 INF: Z Motor: Moving to -0.138499 mm, started at -0.132086 mm, distance = -6.41 um
17-03-18 06:07:04.284 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:04.284 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:04.294 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:04.304 -07 000000438 INF: FPGA: Xmit ZDACW 30255\n [Z Motor]
17-03-18 06:07:04.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:07:04.464 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:07:04.464 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:04.464 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:07:04.464 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:07:04.464 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:04.464 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:04.474 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:07:04.474 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:07:04.474 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:07:05.314 -07 000000626 INF: FPGA: Recv YRDPOS 126082
17-03-18 06:07:05.314 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:07:05.314 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:05.314 -07 000000438 INF: FPGA: 'ZDACW 30255' command took 0 ms to send, 1000 ms to get response, and 1031 ms overall
17-03-18 06:07:05.314 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1020 ms to get response, and 1034 ms overall
17-03-18 06:07:05.314 -07 000000581 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:05.314 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:05.314 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1010 ms to get response, and 1030 ms overall
17-03-18 06:07:05.314 -07 000000629 INF: FPGA: Recv ZDACR 30255
17-03-18 06:07:05.314 -07 000000581 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:05.314 -07 000000581 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:07:05.324 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:05.324 -07 000000438 INF: Z Motor: MoveAbsStepped took 1040 ms (did NOT wait for settling yet))
17-03-18 06:07:05.324 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:05.694 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:07:05.694 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:07:05.754 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:05.754 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:07:05.764 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:05.764 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:05.764 -07 000000581 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 06:07:05.764 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-18 06:07:06.204 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.963579,
17-03-18 06:07:06.714 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:06.714 -07 000000629 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:07:06.724 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.724 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:06.754 -07 000000581 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:06.754 -07 000000581 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:06.754 -07 000000581 INF: Y Motor: Moved to 62.3950 after 2477 ms (table move)
17-03-18 06:07:06.754 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138499 mm (DAC = 30255)
17-03-18 06:07:06.754 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.764 -07 000000581 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:07:06.764 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:07:06.764 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.764 -07 000000626 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:07:06.774 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.774 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.774 -07 000000438 INF: FPGA: Recv ZSGSRD 30844
17-03-18 06:07:06.784 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.784 -07 000000629 INF: FPGA: Recv ZSGSRD 30844
17-03-18 06:07:06.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.794 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.794 -07 000000438 INF: FPGA: Recv ZSGSRD 30842
17-03-18 06:07:06.804 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.804 -07 000000626 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:07:06.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.814 -07 000000581 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:07:06.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30848
17-03-18 06:07:06.824 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:06.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:06.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.834 -07 000000581 INF: FPGA: Recv ZSGSRD 30841
17-03-18 06:07:06.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:06.844 -07 000000626 INF: FPGA: Recv ZSGSRD 30849
17-03-18 06:07:06.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.854 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:06.854 -07 000000629 INF: FPGA: Recv ZPIEZORD 26655
17-03-18 06:07:06.864 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.2 V.
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30848 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30848 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30854 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30848, posNoise = 6, negNoise = 7
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: After move to -0.138499, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: Settle wait time = 2477 ms, measure time = 109 ms (allowed 150 ms), total time = 2586 ms
17-03-18 06:07:06.864 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:06.914 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2636 ms
17-03-18 06:07:06.914 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:06.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:06.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:06.914 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:06.914 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:06.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:06.924 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:06.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:06.924 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:06.924 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:06.924 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:06.934 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:06.934 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:07:06.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:06.974 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:07.274 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:07.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:07.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:07.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:07:07.314 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:07.314 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:07.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:07:07.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:07:07.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:07.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:07.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:07:07.414 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:07.414 -07 000000438 INF: Autofocus start
17-03-18 06:07:07.414 -07 000000438 INF: MeasureProfile start
17-03-18 06:07:07.414 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:07.424 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:07.424 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:07.424 -07 000000438 INF: MeasureProfile done
17-03-18 06:07:07.424 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:07:07.424 -07 000000438 INF: Autofocus finished
17-03-18 06:07:07.624 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:07.624 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 208 ms overall
17-03-18 06:07:07.634 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138497448160177. ----------
17-03-18 06:07:07.634 -07 000000610 INF: Cycle	145	Tile	4	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:07.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28779, sync = True, waitForSettling = True)
17-03-18 06:07:07.634 -07 000000610 INF: Z Motor: Moving to -0.131742 mm, started at -0.138497 mm, distance = 6.76 um
17-03-18 06:07:07.634 -07 000000610 INF: FPGA: Xmit ZDACW 28779\n [Z Motor]
17-03-18 06:07:07.634 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:07:07.644 -07 000000610 INF: FPGA: 'ZDACW 28779' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:07.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:07.644 -07 000000438 INF: FPGA: Recv ZDACR 28779
17-03-18 06:07:07.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:07.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.804 -07 000000569 INF: FPGA: Recv ZSGSRD 29792
17-03-18 06:07:07.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:07.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.814 -07 000000447 INF: FPGA: Recv ZSGSRD 29796
17-03-18 06:07:07.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.824 -07 000000569 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:07:07.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.834 -07 000000438 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:07:07.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.844 -07 000000629 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:07:07.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29801
17-03-18 06:07:07.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:07:07.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:07.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.874 -07 000000438 INF: FPGA: Recv ZSGSRD 29795
17-03-18 06:07:07.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29794
17-03-18 06:07:07.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:07.894 -07 000000581 INF: FPGA: Recv ZSGSRD 29795
17-03-18 06:07:07.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:07.904 -07 000000626 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 06:07:07.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:07.914 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.9 V.
17-03-18 06:07:07.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:07:07.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 5, negNoise = 4
17-03-18 06:07:07.914 -07 000000610 INF: Z Motor: After move to -0.131742, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:07.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:07:07.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:07.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:07.914 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:07.914 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:07.914 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:07.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:07.914 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:07.914 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:07.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:07.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:07.914 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:07.914 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:07.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:07.914 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:07.914 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:07.914 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:07.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:07:07.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:07:07.924 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:07:07.924 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:07:07.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28956 150\n [Camera]
17-03-18 06:07:08.144 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:08.604 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:08.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:08.604 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:08.604 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:08.604 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:07:08.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:08.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:08.604 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:08.604 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:08.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:07:08.794 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28956 839
17-03-18 06:07:08.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:09.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:07:09.004 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:07:09.004 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:09.004 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:09.004 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:07:09.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:07:09.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:07:09.004 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:09.014 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:09.014 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:07:09.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:09.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:09.164 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:09.164 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:09.164 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:07:09.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:09.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:09.164 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:09.164 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:09.164 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:07:09.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:09.354 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:09.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28956 150' command took 2 ms to send, 1394 ms to get response, and 1422 ms overall
17-03-18 06:07:09.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:09.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131739176987044. ------
17-03-18 06:07:09.364 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:09.364 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13814 mm
17-03-18 06:07:09.364 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:09.364 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:07:09.364 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 06:07:09.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:09.564 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:07:09.564 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:07:09.564 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:09.574 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:07:09.574 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:07:09.574 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:09.574 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:09.574 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:07:09.574 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:07:09.584 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:07:09.584 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30177, sync = True, waitForSettling = False)
17-03-18 06:07:09.584 -07 000000629 INF: Z Motor: Moving to -0.138141 mm, started at -0.131739 mm, distance = -6.40 um
17-03-18 06:07:09.584 -07 000000629 INF: FPGA: Xmit ZDACW 30177\n [Z Motor]
17-03-18 06:07:09.594 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:09.594 -07 000000437 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:07:09.594 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 232 ms overall
17-03-18 06:07:09.594 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 212 ms to get response, and 229 ms overall
17-03-18 06:07:09.594 -07 000000626 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:09.594 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:09.594 -07 000000626 INF: Y Motor: Moving 1340 steps-16
17-03-18 06:07:09.594 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:09.594 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:07:09.594 -07 000000629 INF: FPGA: 'ZDACW 30177' command took 0 ms to send, 5 ms to get response, and 7 ms overall
17-03-18 06:07:09.604 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:09.614 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:09.614 -07 000000437 INF: FPGA: Recv ZDACR 30177
17-03-18 06:07:09.624 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:07:09.624 -07 000000629 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:07:09.794 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:09.794 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 198 ms to get response, and 204 ms overall
17-03-18 06:07:09.974 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:07:09.974 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:07:10.034 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:10.034 -07 000000438 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:07:10.044 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:10.044 -07 000000626 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:10.044 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:07:10.044 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.176 mm/sec
17-03-18 06:07:10.994 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:10.994 -07 000000438 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:07:11.004 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:11.004 -07 000000626 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:11.034 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:11.034 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:11.034 -07 000000626 INF: Y Motor: Moved to 63.2231 after 1669 ms (table move)
17-03-18 06:07:11.034 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138141 mm (DAC = 30177)
17-03-18 06:07:11.034 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.034 -07 000000438 INF: FPGA: Recv ZSGSRD 30794
17-03-18 06:07:11.044 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:11.044 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.044 -07 000000626 INF: FPGA: Recv ZSGSRD 30804
17-03-18 06:07:11.054 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.054 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.054 -07 000000626 INF: FPGA: Recv ZSGSRD 30796
17-03-18 06:07:11.064 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.064 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.064 -07 000000438 INF: FPGA: Recv ZSGSRD 30800
17-03-18 06:07:11.074 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.074 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.074 -07 000000626 INF: FPGA: Recv ZSGSRD 30788
17-03-18 06:07:11.084 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.084 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.084 -07 000000626 INF: FPGA: Recv ZSGSRD 30796
17-03-18 06:07:11.094 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.094 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.094 -07 000000629 INF: FPGA: Recv ZSGSRD 30789
17-03-18 06:07:11.104 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.104 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.104 -07 000000438 INF: FPGA: Recv ZSGSRD 30787
17-03-18 06:07:11.114 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.114 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.114 -07 000000438 INF: FPGA: Recv ZSGSRD 30798
17-03-18 06:07:11.124 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.124 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:11.124 -07 000000438 INF: FPGA: Recv ZSGSRD 30802
17-03-18 06:07:11.134 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.134 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:11.134 -07 000000438 INF: FPGA: Recv ZPIEZORD 26605
17-03-18 06:07:11.144 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.605 V. Piezo Error = -9.2 V.
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30795 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30796 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30787 (-137.3 uncal um), Max = 30804 (-137.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30795, posNoise = 9, negNoise = 8
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: After move to -0.138141, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:07:11.144 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:11.194 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1829 ms
17-03-18 06:07:11.194 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:11.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:11.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:11.194 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:11.194 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:11.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:11.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:11.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:11.194 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:11.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:07:11.204 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:11.214 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:07:11.214 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:07:11.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:11.254 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:11.554 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:11.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:11.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:11.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 06:07:11.564 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.975845,
17-03-18 06:07:11.594 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:11.594 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:11.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:07:11.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:07:11.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:11.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:11.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:07:11.794 -07 000000629 INF: Autofocus start
17-03-18 06:07:11.794 -07 000000629 INF: MeasureProfile start
17-03-18 06:07:11.794 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:11.794 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:11.804 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:11.804 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:11.804 -07 000000629 INF: MeasureProfile done
17-03-18 06:07:11.804 -07 000000629 INF: X=64  Z correction [um]=0.2839165
17-03-18 06:07:11.804 -07 000000629 INF: Autofocus finished
17-03-18 06:07:11.824 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:12.004 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:12.004 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:12.004 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138156964916664. ----------
17-03-18 06:07:12.004 -07 000000610 INF: Cycle	145	Tile	5	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:12.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28751, sync = True, waitForSettling = True)
17-03-18 06:07:12.014 -07 000000610 INF: Z Motor: Moving to -0.131614 mm, started at -0.138157 mm, distance = 6.54 um
17-03-18 06:07:12.014 -07 000000610 INF: FPGA: Xmit ZDACW 28751\n [Z Motor]
17-03-18 06:07:12.014 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:07:12.024 -07 000000610 INF: FPGA: 'ZDACW 28751' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:12.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:12.024 -07 000000512 INF: FPGA: Recv ZDACR 28751
17-03-18 06:07:12.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:12.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.184 -07 000000585 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:07:12.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:12.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.194 -07 000000579 INF: FPGA: Recv ZSGSRD 29778
17-03-18 06:07:12.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:07:12.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:07:12.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.224 -07 000000585 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:07:12.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29776
17-03-18 06:07:12.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.244 -07 000000585 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:07:12.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.254 -07 000000579 INF: FPGA: Recv ZSGSRD 29780
17-03-18 06:07:12.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.264 -07 000000626 INF: FPGA: Recv ZSGSRD 29775
17-03-18 06:07:12.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:12.274 -07 000000579 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:07:12.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:12.284 -07 000000629 INF: FPGA: Recv ZPIEZORD 25251
17-03-18 06:07:12.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:12.294 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V.
17-03-18 06:07:12.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29781 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29786 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:07:12.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 6, negNoise = 5
17-03-18 06:07:12.294 -07 000000610 INF: Z Motor: After move to -0.131614, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:12.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:07:12.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:12.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:12.294 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:12.294 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:12.294 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:12.294 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:12.294 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:12.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:12.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:07:12.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:12.294 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:12.294 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:12.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:12.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:12.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:12.304 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:12.314 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:07:12.324 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:07:12.324 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:07:12.324 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:07:12.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28928 150\n [Camera]
17-03-18 06:07:12.524 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:12.974 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:12.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:12.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:12.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:12.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:07:12.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:12.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:12.984 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:12.984 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:12.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:07:13.174 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28928 837
17-03-18 06:07:13.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:13.374 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:07:13.374 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:07:13.374 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:13.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:07:13.374 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:07:13.374 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:13.374 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:13.374 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:13.374 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:07:13.384 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:07:13.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:13.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:13.534 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:13.534 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:13.534 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:07:13.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:13.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:13.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:13.544 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:13.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:07:13.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:13.724 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:13.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28928 150' command took 4 ms to send, 1399 ms to get response, and 1405 ms overall
17-03-18 06:07:13.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:13.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131636389592776. ------
17-03-18 06:07:13.734 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:13.734 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13808 mm
17-03-18 06:07:13.734 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:13.944 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:07:13.944 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:07:13.944 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:13.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:07:13.944 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:07:13.944 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:13.954 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:13.954 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:13.954 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:07:13.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:07:13.964 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:07:13.964 -07 000000629 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:07:13.964 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:13.964 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:13.964 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 228 ms to get response, and 233 ms overall
17-03-18 06:07:13.974 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:13.974 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30163, sync = True, waitForSettling = False)
17-03-18 06:07:13.974 -07 000000512 INF: Z Motor: Moving to -0.138077 mm, started at -0.131636 mm, distance = -6.44 um
17-03-18 06:07:13.984 -07 000000512 INF: FPGA: Xmit ZDACW 30163\n [Z Motor]
17-03-18 06:07:14.814 -07 000000424 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:07:14.814 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:07:14.814 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:14.814 -07 000000512 INF: FPGA: 'ZDACW 30163' command took 0 ms to send, 820 ms to get response, and 840 ms overall
17-03-18 06:07:14.814 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:14.814 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 830 ms to get response, and 841 ms overall
17-03-18 06:07:14.814 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 840 ms to get response, and 843 ms overall
17-03-18 06:07:14.814 -07 000000629 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:14.814 -07 000000629 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:14.814 -07 000000629 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:07:14.814 -07 000000585 INF: FPGA: Recv ZDACR 30163
17-03-18 06:07:14.824 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:14.824 -07 000000512 INF: Z Motor: MoveAbsStepped took 849 ms (did NOT wait for settling yet))
17-03-18 06:07:14.824 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:15.194 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:07:15.194 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:07:15.244 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:15.254 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:07:15.254 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:15.254 -07 000000629 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:15.254 -07 000000629 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:07:15.254 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.175 mm/sec
17-03-18 06:07:16.204 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:16.204 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:07:16.214 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:16.214 -07 000000629 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:16.244 -07 000000629 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:16.244 -07 000000629 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:16.244 -07 000000629 INF: Y Motor: Moved to 64.0562 after 2275 ms (table move)
17-03-18 06:07:16.244 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138077 mm (DAC = 30163)
17-03-18 06:07:16.244 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.244 -07 000000585 INF: FPGA: Recv ZSGSRD 30789
17-03-18 06:07:16.254 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:16.254 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.254 -07 000000585 INF: FPGA: Recv ZSGSRD 30795
17-03-18 06:07:16.264 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.264 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.264 -07 000000629 INF: FPGA: Recv ZSGSRD 30780
17-03-18 06:07:16.274 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.274 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.274 -07 000000424 INF: FPGA: Recv ZSGSRD 30777
17-03-18 06:07:16.284 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.284 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.284 -07 000000629 INF: FPGA: Recv ZSGSRD 30778
17-03-18 06:07:16.294 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.294 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.294 -07 000000585 INF: FPGA: Recv ZSGSRD 30784
17-03-18 06:07:16.304 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.304 -07 000000585 INF: FPGA: Recv ZSGSRD 30784
17-03-18 06:07:16.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.314 -07 000000424 INF: FPGA: Recv ZSGSRD 30785
17-03-18 06:07:16.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.324 -07 000000629 INF: FPGA: Recv ZSGSRD 30788
17-03-18 06:07:16.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:16.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:16.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30784
17-03-18 06:07:16.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.344 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:16.344 -07 000000585 INF: FPGA: Recv ZPIEZORD 26600
17-03-18 06:07:16.354 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -9.2 V.
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30784 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30784 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30777 (-137.2 uncal um), Max = 30795 (-137.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30784, posNoise = 11, negNoise = 7
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: After move to -0.138077, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: Settle wait time = 2275 ms, measure time = 104 ms (allowed 150 ms), total time = 2379 ms
17-03-18 06:07:16.354 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:16.404 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2665 ms
17-03-18 06:07:16.404 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:16.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:16.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:16.404 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:16.404 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:16.404 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:16.404 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:16.404 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:16.404 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:16.414 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:16.414 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:16.414 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:16.414 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:07:16.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:16.464 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:16.764 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:16.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:16.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:16.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 06:07:16.804 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:16.804 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:16.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:16.824 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:16.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:07:16.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:16.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:16.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:07:16.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:16.904 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:16.904 -07 000000592 INF: Autofocus start
17-03-18 06:07:16.904 -07 000000592 INF: MeasureProfile start
17-03-18 06:07:16.904 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:16.914 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:16.914 -07 000000592 INF: MeasureProfile done
17-03-18 06:07:16.914 -07 000000592 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:07:16.914 -07 000000592 INF: Autofocus finished
17-03-18 06:07:16.924 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:16.924 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.986717,
17-03-18 06:07:17.124 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:17.124 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-18 06:07:17.124 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.138086298583104. ----------
17-03-18 06:07:17.124 -07 000000610 INF: Cycle	145	Tile	6	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:17.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28657, sync = True, waitForSettling = True)
17-03-18 06:07:17.134 -07 000000610 INF: Z Motor: Moving to -0.131183 mm, started at -0.138086 mm, distance = 6.90 um
17-03-18 06:07:17.134 -07 000000610 INF: FPGA: Xmit ZDACW 28657\n [Z Motor]
17-03-18 06:07:17.134 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:07:17.144 -07 000000610 INF: FPGA: 'ZDACW 28657' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:17.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:17.144 -07 000000629 INF: FPGA: Recv ZDACR 28657
17-03-18 06:07:17.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:17.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29712
17-03-18 06:07:17.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:17.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.314 -07 000000424 INF: FPGA: Recv ZSGSRD 29716
17-03-18 06:07:17.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29709
17-03-18 06:07:17.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.334 -07 000000592 INF: FPGA: Recv ZSGSRD 29703
17-03-18 06:07:17.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29712
17-03-18 06:07:17.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29710
17-03-18 06:07:17.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.364 -07 000000592 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:07:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.374 -07 000000424 INF: FPGA: Recv ZSGSRD 29713
17-03-18 06:07:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.384 -07 000000585 INF: FPGA: Recv ZSGSRD 29714
17-03-18 06:07:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:17.394 -07 000000592 INF: FPGA: Recv ZSGSRD 29704
17-03-18 06:07:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:17.404 -07 000000629 INF: FPGA: Recv ZPIEZORD 25152
17-03-18 06:07:17.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:17.414 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -10.0 V.
17-03-18 06:07:17.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29710 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29711 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29703 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:17.414 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29710, posNoise = 6, negNoise = 7
17-03-18 06:07:17.414 -07 000000610 INF: Z Motor: After move to -0.131183, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:17.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:07:17.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:17.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:17.414 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:17.414 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:17.414 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:17.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:17.414 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:17.414 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:17.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:17.414 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:17.414 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:17.414 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:17.424 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:17.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:17.424 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:07:17.424 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:17.434 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:07:17.434 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:07:17.434 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:07:17.434 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:07:17.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28834 150\n [Camera]
17-03-18 06:07:17.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:18.094 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:18.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:18.094 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:18.094 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:18.094 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:07:18.104 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:18.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:18.104 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:18.104 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:18.104 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:07:18.284 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28834 837
17-03-18 06:07:18.434 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:18.494 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:07:18.494 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:07:18.494 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:18.504 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:18.504 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:07:18.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:07:18.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:07:18.504 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:18.504 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:18.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:07:18.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:18.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:18.654 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:18.794 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:18.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:18.794 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:18.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:18.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 06:07:18.804 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:18.804 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:07:18.844 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:18.844 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:18.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28834 150' command took 2 ms to send, 1393 ms to get response, and 1403 ms overall
17-03-18 06:07:18.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:18.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131186694742853. ------
17-03-18 06:07:18.844 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13780 mm
17-03-18 06:07:18.844 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:18.844 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:18.854 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:07:18.854 -07 000000592 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:07:18.854 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:19.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:07:19.194 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:07:19.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:19.194 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:19.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:07:19.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:07:19.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:19.204 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:19.204 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-18 06:07:19.204 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:07:19.214 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:19.214 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:07:19.214 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 364 ms to get response, and 366 ms overall
17-03-18 06:07:19.214 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 354 ms to get response, and 363 ms overall
17-03-18 06:07:19.214 -07 000000592 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:19.214 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:19.214 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30103, sync = True, waitForSettling = False)
17-03-18 06:07:19.214 -07 000000512 INF: Z Motor: Moving to -0.137803 mm, started at -0.131187 mm, distance = -6.62 um
17-03-18 06:07:19.224 -07 000000512 INF: FPGA: Xmit ZDACW 30103\n [Z Motor]
17-03-18 06:07:19.224 -07 000000592 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:19.224 -07 000000592 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:07:19.224 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:07:19.234 -07 000000512 INF: FPGA: 'ZDACW 30103' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:07:19.234 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:19.234 -07 000000569 INF: FPGA: Recv ZDACR 30103
17-03-18 06:07:19.244 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:19.244 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:19.244 -07 000000512 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:07:19.414 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:19.414 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-18 06:07:19.614 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:07:19.614 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:07:19.664 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:19.674 -07 000000512 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:07:19.674 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:19.674 -07 000000592 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:19.674 -07 000000592 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:07:19.674 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.118 mm/sec
17-03-18 06:07:20.624 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:20.624 -07 000000512 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:07:20.634 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:20.634 -07 000000592 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:20.664 -07 000000592 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:20.664 -07 000000592 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:20.664 -07 000000592 INF: Y Motor: Moved to 64.8784 after 1812 ms (table move)
17-03-18 06:07:20.664 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137803 mm (DAC = 30103)
17-03-18 06:07:20.664 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.674 -07 000000512 INF: FPGA: Recv ZSGSRD 30741
17-03-18 06:07:20.674 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:07:20.674 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.674 -07 000000512 INF: FPGA: Recv ZSGSRD 30740
17-03-18 06:07:20.684 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:20.684 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.684 -07 000000592 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:07:20.694 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.694 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.694 -07 000000512 INF: FPGA: Recv ZSGSRD 30738
17-03-18 06:07:20.704 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.704 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.704 -07 000000512 INF: FPGA: Recv ZSGSRD 30735
17-03-18 06:07:20.714 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.714 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.714 -07 000000569 INF: FPGA: Recv ZSGSRD 30737
17-03-18 06:07:20.724 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.724 -07 000000512 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:07:20.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.734 -07 000000592 INF: FPGA: Recv ZSGSRD 30743
17-03-18 06:07:20.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.744 -07 000000592 INF: FPGA: Recv ZSGSRD 30741
17-03-18 06:07:20.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:20.754 -07 000000569 INF: FPGA: Recv ZSGSRD 30746
17-03-18 06:07:20.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.764 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:20.764 -07 000000569 INF: FPGA: Recv ZPIEZORD 26566
17-03-18 06:07:20.774 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.2 V.
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30735 (-137.0 uncal um), Max = 30746 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 6, negNoise = 5
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: After move to -0.137803, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-18 06:07:20.774 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:20.824 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1971 ms
17-03-18 06:07:20.824 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:20.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:20.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:20.834 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:20.834 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:20.834 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:20.834 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:20.834 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:20.834 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:20.844 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:07:20.844 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:20.854 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:07:20.854 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:07:20.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:20.904 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:21.204 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:21.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:21.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:21.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-18 06:07:21.244 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:21.244 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:21.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 06:07:21.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:07:21.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:21.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:21.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:07:21.344 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:21.344 -07 000000437 INF: Autofocus start
17-03-18 06:07:21.344 -07 000000437 INF: MeasureProfile start
17-03-18 06:07:21.344 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:21.354 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:21.354 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:21.364 -07 000000437 INF: MeasureProfile done
17-03-18 06:07:21.364 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:07:21.364 -07 000000437 INF: Autofocus finished
17-03-18 06:07:21.554 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:21.554 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:21.554 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137803633248867. ----------
17-03-18 06:07:21.564 -07 000000610 INF: Cycle	145	Tile	7	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:21.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28627, sync = True, waitForSettling = True)
17-03-18 06:07:21.564 -07 000000610 INF: Z Motor: Moving to -0.131046 mm, started at -0.137804 mm, distance = 6.76 um
17-03-18 06:07:21.564 -07 000000610 INF: FPGA: Xmit ZDACW 28627\n [Z Motor]
17-03-18 06:07:21.564 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:07:21.574 -07 000000610 INF: FPGA: 'ZDACW 28627' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:21.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:21.574 -07 000000569 INF: FPGA: Recv ZDACR 28627
17-03-18 06:07:21.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:21.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.734 -07 000000382 INF: FPGA: Recv ZSGSRD 29688
17-03-18 06:07:21.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:21.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.744 -07 000000437 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:07:21.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.754 -07 000000512 INF: FPGA: Recv ZSGSRD 29688
17-03-18 06:07:21.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.764 -07 000000592 INF: FPGA: Recv ZSGSRD 29686
17-03-18 06:07:21.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.774 -07 000000581 INF: FPGA: Recv ZSGSRD 29689
17-03-18 06:07:21.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.784 -07 000000512 INF: FPGA: Recv ZSGSRD 29689
17-03-18 06:07:21.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.794 -07 000000382 INF: FPGA: Recv ZSGSRD 29688
17-03-18 06:07:21.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.804 -07 000000592 INF: FPGA: Recv ZSGSRD 29685
17-03-18 06:07:21.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.814 -07 000000569 INF: FPGA: Recv ZSGSRD 29686
17-03-18 06:07:21.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:21.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29690
17-03-18 06:07:21.824 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:21.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:21.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:21.834 -07 000000569 INF: FPGA: Recv ZPIEZORD 25155
17-03-18 06:07:21.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:21.844 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.9 V.
17-03-18 06:07:21.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29689 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29685 (-130.2 uncal um), Max = 29697 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:07:21.844 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29689, posNoise = 8, negNoise = 4
17-03-18 06:07:21.844 -07 000000610 INF: Z Motor: After move to -0.131046, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:21.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:07:21.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:21.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:21.844 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:21.844 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:21.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:21.844 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:21.844 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:21.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:21.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:21.844 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:21.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:21.844 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:21.854 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:21.854 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:21.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:21.854 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:21.864 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:07:21.864 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:07:21.864 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:07:21.864 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:07:21.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28804 150\n [Camera]
17-03-18 06:07:22.064 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:22.294 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.99219,
17-03-18 06:07:22.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:22.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:22.524 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:22.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:22.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:22.524 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:22.534 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:22.534 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-18 06:07:22.534 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:22.534 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-18 06:07:22.714 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28804 837
17-03-18 06:07:22.864 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:22.924 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:07:22.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:07:22.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:07:22.924 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:22.924 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:07:22.924 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:22.924 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:07:22.924 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:07:22.934 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:07:22.934 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:07:23.084 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:23.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:23.084 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:23.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:23.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:23.084 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:23.214 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:23.214 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:07:23.214 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:23.214 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:07:23.274 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:23.274 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:23.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28804 150' command took 2 ms to send, 1393 ms to get response, and 1404 ms overall
17-03-18 06:07:23.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:23.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131051786287876. ------
17-03-18 06:07:23.274 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:23.274 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13766 mm
17-03-18 06:07:23.274 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:23.284 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:07:23.284 -07 000000447 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 06:07:23.284 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:23.614 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:07:23.614 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:07:23.614 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:23.614 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:07:23.614 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:07:23.614 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:23.624 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:23.624 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-18 06:07:23.624 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:23.634 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 544 ms.
17-03-18 06:07:23.634 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 30071, sync = True, waitForSettling = False)
17-03-18 06:07:23.634 -07 000000592 INF: Z Motor: Moving to -0.137656 mm, started at -0.131052 mm, distance = -6.60 um
17-03-18 06:07:23.634 -07 000000592 INF: FPGA: Xmit ZDACW 30071\n [Z Motor]
17-03-18 06:07:23.644 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:23.644 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:07:23.644 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 360 ms to get response, and 361 ms overall
17-03-18 06:07:23.644 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 350 ms to get response, and 359 ms overall
17-03-18 06:07:23.644 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:07:23.644 -07 000000592 INF: FPGA: 'ZDACW 30071' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:23.644 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:23.644 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:23.644 -07 000000447 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:23.644 -07 000000447 INF: Y Motor: Moving 1351 steps-29
17-03-18 06:07:23.644 -07 000000382 INF: FPGA: Recv ZDACR 30071
17-03-18 06:07:23.654 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:23.654 -07 000000592 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 06:07:23.654 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:23.664 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:23.864 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:23.864 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:07:24.024 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:07:24.024 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:07:24.074 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:24.084 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:07:24.084 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:24.084 -07 000000447 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:24.084 -07 000000447 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:07:24.084 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 06:07:25.034 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:25.034 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:07:25.044 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:25.044 -07 000000447 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:25.074 -07 000000447 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:25.074 -07 000000447 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:25.074 -07 000000447 INF: Y Motor: Moved to 65.7134 after 1798 ms (table move)
17-03-18 06:07:25.084 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137656 mm (DAC = 30071)
17-03-18 06:07:25.084 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.084 -07 000000592 INF: FPGA: Recv ZSGSRD 30719
17-03-18 06:07:25.094 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:25.094 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.094 -07 000000447 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:07:25.104 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.104 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.104 -07 000000382 INF: FPGA: Recv ZSGSRD 30720
17-03-18 06:07:25.114 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.114 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.114 -07 000000382 INF: FPGA: Recv ZSGSRD 30719
17-03-18 06:07:25.124 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.124 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.124 -07 000000382 INF: FPGA: Recv ZSGSRD 30717
17-03-18 06:07:25.134 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.134 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.134 -07 000000581 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:07:25.144 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.144 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.144 -07 000000447 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:07:25.154 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.154 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30720
17-03-18 06:07:25.164 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.164 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.164 -07 000000581 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:07:25.174 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.174 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:25.174 -07 000000581 INF: FPGA: Recv ZSGSRD 30717
17-03-18 06:07:25.184 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.184 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:25.184 -07 000000581 INF: FPGA: Recv ZPIEZORD 26527
17-03-18 06:07:25.194 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.2 V.
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30720 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30720 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30717 (-136.9 uncal um), Max = 30726 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30720, posNoise = 6, negNoise = 3
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: After move to -0.137656, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-18 06:07:25.194 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:25.244 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1960 ms
17-03-18 06:07:25.244 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:25.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:25.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:25.244 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:25.244 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:25.244 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:25.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:25.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:25.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:25.254 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:25.254 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:25.254 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:07:25.254 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:07:25.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:25.304 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:25.604 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:25.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:25.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:25.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-18 06:07:25.644 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:25.644 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:25.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:25.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:07:25.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:25.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:25.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:07:25.744 -07 000000579 INF: Autofocus start
17-03-18 06:07:25.744 -07 000000579 INF: MeasureProfile start
17-03-18 06:07:25.744 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:25.744 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:25.754 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:25.754 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:25.754 -07 000000579 INF: MeasureProfile done
17-03-18 06:07:25.754 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:07:25.754 -07 000000579 INF: Autofocus finished
17-03-18 06:07:25.954 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:25.954 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:25.954 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137675149006032. ----------
17-03-18 06:07:25.954 -07 000000610 INF: Cycle	145	Tile	8	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:25.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28579, sync = True, waitForSettling = True)
17-03-18 06:07:25.964 -07 000000610 INF: Z Motor: Moving to -0.130826 mm, started at -0.137675 mm, distance = 6.85 um
17-03-18 06:07:25.964 -07 000000610 INF: FPGA: Xmit ZDACW 28579\n [Z Motor]
17-03-18 06:07:25.964 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:07:25.974 -07 000000610 INF: FPGA: 'ZDACW 28579' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:25.974 -07 000000467 INF: FPGA: Recv ZDACR 28579
17-03-18 06:07:25.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:25.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.134 -07 000000447 INF: FPGA: Recv ZSGSRD 29656
17-03-18 06:07:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29662
17-03-18 06:07:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.154 -07 000000461 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:07:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.164 -07 000000438 INF: FPGA: Recv ZSGSRD 29660
17-03-18 06:07:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.174 -07 000000447 INF: FPGA: Recv ZSGSRD 29653
17-03-18 06:07:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.184 -07 000000581 INF: FPGA: Recv ZSGSRD 29660
17-03-18 06:07:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29653
17-03-18 06:07:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.204 -07 000000438 INF: FPGA: Recv ZSGSRD 29653
17-03-18 06:07:26.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.214 -07 000000382 INF: FPGA: Recv ZSGSRD 29655
17-03-18 06:07:26.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:26.224 -07 000000461 INF: FPGA: Recv ZSGSRD 29651
17-03-18 06:07:26.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:26.234 -07 000000467 INF: FPGA: Recv ZPIEZORD 25118
17-03-18 06:07:26.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:26.244 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.0 V.
17-03-18 06:07:26.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29656 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29656 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29651 (-130.0 uncal um), Max = 29662 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:07:26.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29656, posNoise = 6, negNoise = 5
17-03-18 06:07:26.244 -07 000000610 INF: Z Motor: After move to -0.130826, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:26.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:07:26.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:26.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:26.244 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:26.244 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:26.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:26.244 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:26.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:26.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:26.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:26.244 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:26.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:07:26.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:26.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:26.244 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:26.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:26.254 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:26.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:07:26.264 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:07:26.264 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:07:26.264 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:07:26.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28755 150\n [Camera]
17-03-18 06:07:26.464 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:26.834 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:26.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:26.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:26.924 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:26.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:26.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2318701872, 0x0, 391868352) start.
17-03-18 06:07:26.924 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:26.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:26.924 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:26.924 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:26.924 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2354124136, 0x0, 418435064) start.
17-03-18 06:07:27.114 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28755 837
17-03-18 06:07:27.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:27.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2318701872, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:07:27.324 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:07:27.324 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:27.324 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2354124136, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:07:27.324 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:07:27.324 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:27.324 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:27.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:07:27.324 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:27.334 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:07:27.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:27.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:27.484 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:27.484 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:27.484 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2430599328, 0x0, 391868352) start.
17-03-18 06:07:27.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:27.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:27.484 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:27.484 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:27.484 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2466021592, 0x0, 418435064) start.
17-03-18 06:07:27.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:27.774 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.003063,
17-03-18 06:07:27.774 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:27.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28755 150' command took 2 ms to send, 1491 ms to get response, and 1502 ms overall
17-03-18 06:07:27.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:27.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130839787287198. ------
17-03-18 06:07:27.774 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13724 mm
17-03-18 06:07:27.774 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:27.784 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29980, sync = True, waitForSettling = False)
17-03-18 06:07:27.784 -07 000000629 INF: Z Motor: Moving to -0.137240 mm, started at -0.130840 mm, distance = -6.40 um
17-03-18 06:07:27.784 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:07:27.784 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:07:27.794 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:27.804 -07 000000629 INF: FPGA: Xmit ZDACW 29980\n [Z Motor]
17-03-18 06:07:27.814 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:27.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2466021592, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:07:27.874 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:07:27.874 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:27.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2430599328, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:07:27.874 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:07:27.874 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:27.884 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:27.884 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:07:27.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:07:27.884 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:07:27.894 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:27.894 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:07:27.894 -07 000000467 INF: FPGA: Recv YRDPOS 134582
17-03-18 06:07:27.904 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 99 ms to get response, and 121 ms overall
17-03-18 06:07:27.904 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 79 ms to get response, and 117 ms overall
17-03-18 06:07:27.904 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:27.904 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:27.904 -07 000000629 INF: FPGA: 'ZDACW 29980' command took 0 ms to send, 89 ms to get response, and 118 ms overall
17-03-18 06:07:27.904 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:27.904 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-18 06:07:27.914 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:27.924 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:27.924 -07 000000467 INF: FPGA: Recv ZDACR 29980
17-03-18 06:07:27.934 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:27.934 -07 000000629 INF: Z Motor: MoveAbsStepped took 148 ms (did NOT wait for settling yet))
17-03-18 06:07:28.104 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:28.104 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:28.284 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:07:28.284 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 06:07:28.334 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:28.344 -07 000000629 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:07:28.354 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:28.354 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:28.354 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:07:28.354 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.203 mm/sec
17-03-18 06:07:29.304 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:29.304 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:07:29.314 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.314 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:29.364 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:29.364 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:29.364 -07 000000626 INF: Y Motor: Moved to 66.5386 after 1584 ms (table move)
17-03-18 06:07:29.374 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137240 mm (DAC = 29980)
17-03-18 06:07:29.374 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.374 -07 000000424 INF: FPGA: Recv ZSGSRD 30659
17-03-18 06:07:29.384 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:29.384 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.384 -07 000000467 INF: FPGA: Recv ZSGSRD 30656
17-03-18 06:07:29.394 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.394 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.394 -07 000000424 INF: FPGA: Recv ZSGSRD 30650
17-03-18 06:07:29.404 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.404 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.404 -07 000000467 INF: FPGA: Recv ZSGSRD 30651
17-03-18 06:07:29.414 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.414 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.414 -07 000000424 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:07:29.424 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.424 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.424 -07 000000629 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:07:29.434 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.434 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.434 -07 000000424 INF: FPGA: Recv ZSGSRD 30655
17-03-18 06:07:29.444 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.444 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30653
17-03-18 06:07:29.454 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.454 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.454 -07 000000626 INF: FPGA: Recv ZSGSRD 30652
17-03-18 06:07:29.464 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.464 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:29.464 -07 000000626 INF: FPGA: Recv ZSGSRD 30654
17-03-18 06:07:29.474 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.474 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:29.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 26450
17-03-18 06:07:29.484 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.2 V.
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30655 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30654 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30650 (-136.4 uncal um), Max = 30659 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30655, posNoise = 4, negNoise = 5
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: After move to -0.137240, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: Settle wait time = 1589 ms, measure time = 110 ms (allowed 150 ms), total time = 1699 ms
17-03-18 06:07:29.484 -07 000000585 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:29.524 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 06:07:29.524 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:29.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:29.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:29.524 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:29.524 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:29.524 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:29.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:29.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:29.524 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:29.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:29.534 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:29.534 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:29.534 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:07:29.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:29.604 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:29.904 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:29.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:29.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:29.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:29.944 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:29.944 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:29.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 06:07:30.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:07:30.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:30.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:30.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:07:30.044 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:30.044 -07 000000437 INF: Autofocus start
17-03-18 06:07:30.044 -07 000000437 INF: MeasureProfile start
17-03-18 06:07:30.044 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:30.054 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:30.054 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:30.054 -07 000000437 INF: MeasureProfile done
17-03-18 06:07:30.054 -07 000000437 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:07:30.054 -07 000000437 INF: Autofocus finished
17-03-18 06:07:30.254 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:30.254 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:30.254 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137257575216817. ----------
17-03-18 06:07:30.254 -07 000000610 INF: Cycle	145	Tile	9	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:30.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28487, sync = True, waitForSettling = True)
17-03-18 06:07:30.264 -07 000000610 INF: Z Motor: Moving to -0.130405 mm, started at -0.137258 mm, distance = 6.85 um
17-03-18 06:07:30.264 -07 000000610 INF: FPGA: Xmit ZDACW 28487\n [Z Motor]
17-03-18 06:07:30.264 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:07:30.274 -07 000000610 INF: FPGA: 'ZDACW 28487' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:30.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:30.274 -07 000000437 INF: FPGA: Recv ZDACR 28487
17-03-18 06:07:30.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:30.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.434 -07 000000629 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:07:30.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.444 -07 000000424 INF: FPGA: Recv ZSGSRD 29594
17-03-18 06:07:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29592
17-03-18 06:07:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.464 -07 000000626 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:07:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29593
17-03-18 06:07:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.484 -07 000000512 INF: FPGA: Recv ZSGSRD 29585
17-03-18 06:07:30.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:07:30.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.504 -07 000000502 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:07:30.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.514 -07 000000626 INF: FPGA: Recv ZSGSRD 29587
17-03-18 06:07:30.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:30.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29592
17-03-18 06:07:30.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:30.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 25058
17-03-18 06:07:30.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:30.544 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.9 V.
17-03-18 06:07:30.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29590 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29594 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:07:30.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29590, posNoise = 4, negNoise = 5
17-03-18 06:07:30.544 -07 000000610 INF: Z Motor: After move to -0.130405, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:30.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:07:30.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:30.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:30.544 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:30.544 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:30.544 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:30.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:30.544 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:30.544 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:30.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:30.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:30.544 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:30.544 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:30.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:30.544 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:30.544 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:30.544 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:30.554 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:07:30.554 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:07:30.554 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:07:30.554 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:07:30.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28664 150\n [Camera]
17-03-18 06:07:30.764 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:31.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:31.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:31.214 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:31.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:31.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:31.214 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:31.214 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:31.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:07:31.214 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:31.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:07:31.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28664 837
17-03-18 06:07:31.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:31.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:07:31.614 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:07:31.614 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:31.624 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:31.624 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:07:31.624 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:07:31.624 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:07:31.624 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:31.624 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:31.634 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:07:31.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:31.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:31.774 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:31.774 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:31.774 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) start.
17-03-18 06:07:31.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:31.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:31.774 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:31.774 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:31.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) start.
17-03-18 06:07:31.834 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:31.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:31.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:31.964 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:31.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28664 150' command took 2 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-18 06:07:31.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:31.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130415789285842. ------
17-03-18 06:07:31.974 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:31.974 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13723 mm
17-03-18 06:07:31.974 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:31.974 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:31.974 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:07:31.974 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29978, sync = True, waitForSettling = False)
17-03-18 06:07:31.974 -07 000000629 INF: Z Motor: Moving to -0.137230 mm, started at -0.130416 mm, distance = -6.81 um
17-03-18 06:07:31.974 -07 000000585 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:07:31.984 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:31.984 -07 000000629 INF: FPGA: Xmit ZDACW 29978\n [Z Motor]
17-03-18 06:07:31.984 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:07:31.994 -07 000000629 INF: FPGA: 'ZDACW 29978' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:07:31.994 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:31.994 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:07:32.004 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:07:32.004 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:32.004 -07 000000585 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:32.004 -07 000000585 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:07:32.004 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:32.014 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:32.014 -07 000000502 INF: FPGA: Recv ZDACR 29978
17-03-18 06:07:32.024 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:32.024 -07 000000629 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:07:32.024 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:32.174 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:07:32.174 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:07:32.174 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:32.174 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2501443856, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:07:32.174 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:07:32.174 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:32.184 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:32.184 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:32.184 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:07:32.194 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:07:32.204 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:32.204 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 06:07:32.404 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:07:32.404 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 06:07:32.454 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:32.454 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:07:32.464 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:32.464 -07 000000585 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:32.464 -07 000000585 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:07:32.464 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.110 mm/sec
17-03-18 06:07:33.224 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.981281,
17-03-18 06:07:33.414 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:33.414 -07 000000424 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:07:33.424 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.424 -07 000000585 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:33.454 -07 000000585 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:33.454 -07 000000585 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:33.454 -07 000000585 INF: Y Motor: Moved to 67.3711 after 1475 ms (table move)
17-03-18 06:07:33.454 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137230 mm (DAC = 29978)
17-03-18 06:07:33.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.454 -07 000000382 INF: FPGA: Recv ZSGSRD 30660
17-03-18 06:07:33.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:33.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.464 -07 000000585 INF: FPGA: Recv ZSGSRD 30648
17-03-18 06:07:33.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:07:33.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.474 -07 000000424 INF: FPGA: Recv ZSGSRD 30654
17-03-18 06:07:33.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:33.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.484 -07 000000424 INF: FPGA: Recv ZSGSRD 30646
17-03-18 06:07:33.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.494 -07 000000424 INF: FPGA: Recv ZSGSRD 30649
17-03-18 06:07:33.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.504 -07 000000424 INF: FPGA: Recv ZSGSRD 30655
17-03-18 06:07:33.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.514 -07 000000382 INF: FPGA: Recv ZSGSRD 30654
17-03-18 06:07:33.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.524 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.524 -07 000000424 INF: FPGA: Recv ZSGSRD 30661
17-03-18 06:07:33.534 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.534 -07 000000424 INF: FPGA: Recv ZSGSRD 30649
17-03-18 06:07:33.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:33.544 -07 000000382 INF: FPGA: Recv ZSGSRD 30650
17-03-18 06:07:33.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.554 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:33.554 -07 000000382 INF: FPGA: Recv ZPIEZORD 26493
17-03-18 06:07:33.564 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.1 V.
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30653 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30652 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30646 (-136.4 uncal um), Max = 30661 (-136.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30653, posNoise = 8, negNoise = 7
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: After move to -0.137230, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: Settle wait time = 1478 ms, measure time = 104 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:07:33.564 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:33.614 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:07:33.614 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:33.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:33.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:33.614 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:33.614 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:33.614 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:33.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:33.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:07:33.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:33.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:33.624 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:33.624 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:33.624 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:07:33.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:33.674 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:33.974 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:33.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:33.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:33.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-18 06:07:34.014 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:34.014 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:34.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:34.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:07:34.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:34.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:34.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:07:34.114 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:34.114 -07 000000581 INF: Autofocus start
17-03-18 06:07:34.114 -07 000000581 INF: MeasureProfile start
17-03-18 06:07:34.114 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:34.124 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:34.124 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:34.134 -07 000000581 INF: MeasureProfile done
17-03-18 06:07:34.134 -07 000000581 INF: X=-84  Z correction [um]=-0.4122998
17-03-18 06:07:34.134 -07 000000581 INF: Autofocus finished
17-03-18 06:07:34.324 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:34.324 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:34.324 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.137244726792534. ----------
17-03-18 06:07:34.324 -07 000000610 INF: Cycle	145	Tile	10	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:34.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28400, sync = True, waitForSettling = True)
17-03-18 06:07:34.334 -07 000000610 INF: Z Motor: Moving to -0.130007 mm, started at -0.137245 mm, distance = 7.24 um
17-03-18 06:07:34.334 -07 000000610 INF: FPGA: Xmit ZDACW 28400\n [Z Motor]
17-03-18 06:07:34.334 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:07:34.344 -07 000000610 INF: FPGA: 'ZDACW 28400' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:34.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:34.344 -07 000000592 INF: FPGA: Recv ZDACR 28400
17-03-18 06:07:34.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:34.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.504 -07 000000438 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:07:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.514 -07 000000424 INF: FPGA: Recv ZSGSRD 29526
17-03-18 06:07:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29530
17-03-18 06:07:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.534 -07 000000581 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:07:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29530
17-03-18 06:07:34.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.554 -07 000000626 INF: FPGA: Recv ZSGSRD 29530
17-03-18 06:07:34.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.574 -07 000000437 INF: FPGA: Recv ZSGSRD 29533
17-03-18 06:07:34.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:07:34.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.584 -07 000000592 INF: FPGA: Recv ZSGSRD 29521
17-03-18 06:07:34.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.594 -07 000000438 INF: FPGA: Recv ZSGSRD 29532
17-03-18 06:07:34.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:34.604 -07 000000438 INF: FPGA: Recv ZSGSRD 29529
17-03-18 06:07:34.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:34.614 -07 000000592 INF: FPGA: Recv ZPIEZORD 25008
17-03-18 06:07:34.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:34.624 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 06:07:34.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29521 (-129.2 uncal um), Max = 29533 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:34.624 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 5, negNoise = 7
17-03-18 06:07:34.624 -07 000000610 INF: Z Motor: After move to -0.130007, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:34.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 06:07:34.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:34.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:34.624 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:34.624 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:34.624 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:34.624 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:34.624 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:34.624 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:34.624 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:34.624 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:34.624 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:07:34.624 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:34.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:34.634 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:34.634 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:34.634 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:34.644 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:07:34.644 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:07:34.644 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:07:34.644 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:07:34.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28577 150\n [Camera]
17-03-18 06:07:34.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:35.304 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:35.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:35.304 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:35.304 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:35.304 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:07:35.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:35.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:35.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:35.304 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:35.304 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:07:35.504 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28577 837
17-03-18 06:07:35.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:35.684 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:07:35.684 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:07:35.684 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:35.684 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:35.694 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:07:35.694 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:07:35.694 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:07:35.694 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:35.694 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:35.694 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:07:35.864 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:35.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:35.864 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:35.864 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:35.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:07:35.864 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:35.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:35.864 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:35.864 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:35.864 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:07:36.054 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:36.054 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:36.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28577 150' command took 2 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-18 06:07:36.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:36.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130017488133053. ------
17-03-18 06:07:36.064 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:36.064 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13642 mm
17-03-18 06:07:36.064 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:36.064 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:07:36.064 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:07:36.064 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:36.064 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29802, sync = True, waitForSettling = False)
17-03-18 06:07:36.064 -07 000000438 INF: Z Motor: Moving to -0.136425 mm, started at -0.130017 mm, distance = -6.41 um
17-03-18 06:07:36.194 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:36.194 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 06:07:36.204 -07 000000438 INF: FPGA: Xmit ZDACW 29802\n [Z Motor]
17-03-18 06:07:36.214 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:36.274 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:07:36.274 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:07:36.274 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:36.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:07:36.274 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:07:36.274 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:36.274 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:36.274 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:36.274 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:07:36.284 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:07:36.294 -07 000000447 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:07:36.294 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:07:36.294 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 93 ms to get response, and 229 ms overall
17-03-18 06:07:36.294 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:36.294 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:36.294 -07 000000626 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:07:36.294 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:36.294 -07 000000438 INF: FPGA: 'ZDACW 29802' command took 0 ms to send, 83 ms to get response, and 228 ms overall
17-03-18 06:07:36.304 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:36.304 -07 000000447 INF: FPGA: Recv ZDACR 29802
17-03-18 06:07:36.314 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:07:36.314 -07 000000438 INF: Z Motor: MoveAbsStepped took 245 ms (did NOT wait for settling yet))
17-03-18 06:07:36.414 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:36.414 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 06:07:36.674 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:07:36.674 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 383 ms overall
17-03-18 06:07:36.724 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:36.734 -07 000000438 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:07:36.734 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:36.734 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:36.734 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:07:36.734 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.842 mm, average velocity = 2.191 mm/sec
17-03-18 06:07:36.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:36.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:37.684 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:37.684 -07 000000447 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:07:37.694 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:37.694 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:37.724 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:37.724 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:37.724 -07 000000626 INF: Y Motor: Moved to 68.2041 after 1659 ms (table move)
17-03-18 06:07:37.724 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136425 mm (DAC = 29802)
17-03-18 06:07:37.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.724 -07 000000626 INF: FPGA: Recv ZSGSRD 30528
17-03-18 06:07:37.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:37.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.734 -07 000000585 INF: FPGA: Recv ZSGSRD 30529
17-03-18 06:07:37.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:37.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.744 -07 000000447 INF: FPGA: Recv ZSGSRD 30534
17-03-18 06:07:37.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.754 -07 000000585 INF: FPGA: Recv ZSGSRD 30527
17-03-18 06:07:37.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.764 -07 000000438 INF: FPGA: Recv ZSGSRD 30520
17-03-18 06:07:37.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30520
17-03-18 06:07:37.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.784 -07 000000447 INF: FPGA: Recv ZSGSRD 30528
17-03-18 06:07:37.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.794 -07 000000626 INF: FPGA: Recv ZSGSRD 30530
17-03-18 06:07:37.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.804 -07 000000585 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:07:37.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:37.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30532
17-03-18 06:07:37.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.824 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:37.824 -07 000000585 INF: FPGA: Recv ZPIEZORD 26330
17-03-18 06:07:37.834 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V.
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30534 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 7, negNoise = 7
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: After move to -0.136425, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: Settle wait time = 1661 ms, measure time = 105 ms (allowed 150 ms), total time = 1766 ms
17-03-18 06:07:37.834 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:37.884 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1819 ms
17-03-18 06:07:37.884 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:37.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:37.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:37.894 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:37.894 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:37.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:37.894 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:37.904 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:37.904 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:37.904 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:37.904 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:37.914 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:37.914 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:07:37.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:37.964 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:38.264 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:38.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:38.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:38.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:38.304 -07 000000629 INF: FPGA: Recv @CAMSNAP 382
17-03-18 06:07:38.304 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:38.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 06:07:38.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:07:38.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:38.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:38.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:07:38.404 -07 000000382 INF: Autofocus start
17-03-18 06:07:38.404 -07 000000382 INF: MeasureProfile start
17-03-18 06:07:38.404 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:38.404 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:38.414 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:38.414 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:38.414 -07 000000382 INF: MeasureProfile done
17-03-18 06:07:38.414 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:07:38.414 -07 000000382 INF: Autofocus finished
17-03-18 06:07:38.584 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.990831,
17-03-18 06:07:38.614 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:38.614 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:07:38.614 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136435276062672. ----------
17-03-18 06:07:38.614 -07 000000610 INF: Cycle	145	Tile	11	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:38.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28309, sync = True, waitForSettling = True)
17-03-18 06:07:38.624 -07 000000610 INF: Z Motor: Moving to -0.129590 mm, started at -0.136435 mm, distance = 6.84 um
17-03-18 06:07:38.624 -07 000000610 INF: FPGA: Xmit ZDACW 28309\n [Z Motor]
17-03-18 06:07:38.624 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:07:38.634 -07 000000610 INF: FPGA: 'ZDACW 28309' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:38.634 -07 000000447 INF: FPGA: Recv ZDACR 28309
17-03-18 06:07:38.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:38.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.794 -07 000000438 INF: FPGA: Recv ZSGSRD 29460
17-03-18 06:07:38.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.804 -07 000000569 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:07:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.814 -07 000000629 INF: FPGA: Recv ZSGSRD 29459
17-03-18 06:07:38.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.824 -07 000000382 INF: FPGA: Recv ZSGSRD 29461
17-03-18 06:07:38.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.834 -07 000000512 INF: FPGA: Recv ZSGSRD 29460
17-03-18 06:07:38.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.844 -07 000000447 INF: FPGA: Recv ZSGSRD 29468
17-03-18 06:07:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.854 -07 000000585 INF: FPGA: Recv ZSGSRD 29462
17-03-18 06:07:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29457
17-03-18 06:07:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.874 -07 000000585 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:07:38.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:38.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29461
17-03-18 06:07:38.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:38.894 -07 000000629 INF: FPGA: Recv ZPIEZORD 24931
17-03-18 06:07:38.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:38.904 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.9 V.
17-03-18 06:07:38.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29461 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29461 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29457 (-128.8 uncal um), Max = 29468 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:07:38.904 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29461, posNoise = 7, negNoise = 4
17-03-18 06:07:38.904 -07 000000610 INF: Z Motor: After move to -0.129590, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:38.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:07:38.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:38.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:38.904 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:38.904 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:38.904 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:38.904 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:38.904 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:38.904 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:38.904 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:38.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:38.904 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:38.904 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:38.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:38.904 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:38.904 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:38.904 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:38.914 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:07:38.914 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:07:38.914 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:07:38.914 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:07:38.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28486 150\n [Camera]
17-03-18 06:07:39.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:39.574 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:39.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:39.574 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:39.574 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:39.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:39.574 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:39.574 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:39.574 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:07:39.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:39.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:07:39.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28486 837
17-03-18 06:07:39.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:39.964 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:07:39.964 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:07:39.964 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:39.964 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:39.964 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:07:39.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:07:39.964 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:07:39.964 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:39.974 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:39.974 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:07:40.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:40.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:40.134 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:40.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:40.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:40.134 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:40.134 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:40.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 06:07:40.144 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:40.144 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:07:40.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:07:40.324 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:40.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28486 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-18 06:07:40.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:40.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129587065919555. ------
17-03-18 06:07:40.454 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:40.454 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13624 mm
17-03-18 06:07:40.454 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:40.454 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:40.454 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:07:40.454 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:07:40.454 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29761, sync = True, waitForSettling = False)
17-03-18 06:07:40.454 -07 000000502 INF: Z Motor: Moving to -0.136237 mm, started at -0.129587 mm, distance = -6.65 um
17-03-18 06:07:40.464 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:40.464 -07 000000502 INF: FPGA: Xmit ZDACW 29761\n [Z Motor]
17-03-18 06:07:40.474 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:40.484 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:40.524 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:07:40.524 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:07:40.534 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:40.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:40.534 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:07:40.534 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:07:40.534 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:40.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:07:40.544 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:07:40.544 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:07:40.554 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:07:40.554 -07 000000382 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:07:40.554 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 73 ms to get response, and 98 ms overall
17-03-18 06:07:40.554 -07 000000569 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:40.554 -07 000000502 INF: FPGA: 'ZDACW 29761' command took 0 ms to send, 83 ms to get response, and 98 ms overall
17-03-18 06:07:40.554 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:40.554 -07 000000382 INF: FPGA: Recv ZDACR 29761
17-03-18 06:07:40.554 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:40.554 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:07:40.564 -07 000000502 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:40.564 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:40.564 -07 000000502 INF: Z Motor: MoveAbsStepped took 105 ms (did NOT wait for settling yet))
17-03-18 06:07:40.684 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:40.684 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:07:40.934 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:07:40.934 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:07:40.984 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:40.994 -07 000000502 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:07:40.994 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:40.994 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:40.994 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:07:40.994 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.218 mm/sec
17-03-18 06:07:41.834 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:41.944 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:41.944 -07 000000502 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:07:41.954 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:41.954 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:41.984 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:41.984 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:41.984 -07 000000569 INF: Y Motor: Moved to 69.0264 after 1527 ms (table move)
17-03-18 06:07:41.984 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136237 mm (DAC = 29761)
17-03-18 06:07:41.984 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:41.984 -07 000000502 INF: FPGA: Recv ZSGSRD 30502
17-03-18 06:07:41.994 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:41.994 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:41.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30498
17-03-18 06:07:42.004 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.004 -07 000000569 INF: FPGA: Recv ZSGSRD 30496
17-03-18 06:07:42.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.014 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.014 -07 000000569 INF: FPGA: Recv ZSGSRD 30488
17-03-18 06:07:42.024 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.024 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30494
17-03-18 06:07:42.034 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.034 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30493
17-03-18 06:07:42.044 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.044 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.044 -07 000000502 INF: FPGA: Recv ZSGSRD 30498
17-03-18 06:07:42.054 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.054 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.054 -07 000000569 INF: FPGA: Recv ZSGSRD 30499
17-03-18 06:07:42.064 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.064 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30497
17-03-18 06:07:42.074 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.074 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:42.074 -07 000000382 INF: FPGA: Recv ZSGSRD 30498
17-03-18 06:07:42.084 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.084 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:42.084 -07 000000569 INF: FPGA: Recv ZPIEZORD 26321
17-03-18 06:07:42.094 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.541 V. Piezo Error = -9.2 V.
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30496 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30498 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30488 (-135.4 uncal um), Max = 30502 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30496, posNoise = 6, negNoise = 8
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: After move to -0.136237, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: Settle wait time = 1530 ms, measure time = 105 ms (allowed 150 ms), total time = 1635 ms
17-03-18 06:07:42.094 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:42.144 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1689 ms
17-03-18 06:07:42.144 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:42.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:42.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:42.144 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:42.144 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:42.144 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:42.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:42.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:42.154 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:42.154 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:42.154 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:42.154 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:07:42.154 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:07:42.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:42.204 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:42.504 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:42.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:42.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:42.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:42.544 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:42.544 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:42.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:42.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:07:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:42.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:07:42.644 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:42.644 -07 000000382 INF: Autofocus start
17-03-18 06:07:42.644 -07 000000382 INF: MeasureProfile start
17-03-18 06:07:42.644 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:42.654 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:42.654 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:42.654 -07 000000382 INF: MeasureProfile done
17-03-18 06:07:42.654 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:07:42.654 -07 000000382 INF: Autofocus finished
17-03-18 06:07:42.854 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:42.854 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:42.864 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136236125486277. ----------
17-03-18 06:07:42.864 -07 000000610 INF: Cycle	145	Tile	12	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:42.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28256, sync = True, waitForSettling = True)
17-03-18 06:07:42.864 -07 000000610 INF: Z Motor: Moving to -0.129348 mm, started at -0.136236 mm, distance = 6.89 um
17-03-18 06:07:42.864 -07 000000610 INF: FPGA: Xmit ZDACW 28256\n [Z Motor]
17-03-18 06:07:42.864 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:07:42.874 -07 000000610 INF: FPGA: 'ZDACW 28256' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:42.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:42.874 -07 000000382 INF: FPGA: Recv ZDACR 28256
17-03-18 06:07:42.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:42.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.034 -07 000000447 INF: FPGA: Recv ZSGSRD 29428
17-03-18 06:07:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.044 -07 000000382 INF: FPGA: Recv ZSGSRD 29424
17-03-18 06:07:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.054 -07 000000502 INF: FPGA: Recv ZSGSRD 29421
17-03-18 06:07:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.064 -07 000000569 INF: FPGA: Recv ZSGSRD 29419
17-03-18 06:07:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.074 -07 000000502 INF: FPGA: Recv ZSGSRD 29427
17-03-18 06:07:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29426
17-03-18 06:07:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29415
17-03-18 06:07:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.104 -07 000000581 INF: FPGA: Recv ZSGSRD 29421
17-03-18 06:07:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.114 -07 000000502 INF: FPGA: Recv ZSGSRD 29429
17-03-18 06:07:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:43.124 -07 000000569 INF: FPGA: Recv ZSGSRD 29421
17-03-18 06:07:43.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:43.134 -07 000000467 INF: FPGA: Recv ZPIEZORD 24892
17-03-18 06:07:43.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:43.144 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.9 V.
17-03-18 06:07:43.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29423 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29422 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29429 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:07:43.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29423, posNoise = 6, negNoise = 8
17-03-18 06:07:43.144 -07 000000610 INF: Z Motor: After move to -0.129348, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:43.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:07:43.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:43.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:43.144 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:43.144 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:43.144 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:43.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:43.144 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:43.144 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:43.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:43.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:43.144 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:43.144 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:43.154 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:43.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:43.154 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:43.154 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:43.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:07:43.164 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:07:43.164 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:07:43.164 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:07:43.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28432 150\n [Camera]
17-03-18 06:07:43.364 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:43.814 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:43.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:43.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:43.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:43.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:43.824 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:43.824 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:43.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:07:43.824 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:43.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:07:43.944 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.999021,
17-03-18 06:07:44.004 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28432 837
17-03-18 06:07:44.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:44.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:07:44.214 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:07:44.214 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:44.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:07:44.224 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:07:44.224 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:44.224 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:44.224 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:07:44.224 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:44.234 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:07:44.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:44.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:44.374 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:44.374 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:44.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2335576936, 0x0, 391868352) start.
17-03-18 06:07:44.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:44.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:44.384 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:44.384 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:44.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:07:44.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:44.564 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:44.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28432 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:07:44.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:44.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129342945858168. ------
17-03-18 06:07:44.574 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13574 mm
17-03-18 06:07:44.574 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:44.574 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:44.574 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:44.574 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:07:44.574 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:07:44.574 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29653, sync = True, waitForSettling = False)
17-03-18 06:07:44.574 -07 000000382 INF: Z Motor: Moving to -0.135743 mm, started at -0.129343 mm, distance = -6.40 um
17-03-18 06:07:44.584 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:44.584 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:44.584 -07 000000467 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:07:44.594 -07 000000382 INF: FPGA: Xmit ZDACW 29653\n [Z Motor]
17-03-18 06:07:44.594 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:07:44.594 -07 000000461 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:44.594 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:07:44.594 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:44.594 -07 000000461 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:07:44.604 -07 000000382 INF: FPGA: 'ZDACW 29653' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:07:44.604 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:44.614 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:44.624 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:44.624 -07 000000467 INF: FPGA: Recv ZDACR 29653
17-03-18 06:07:44.634 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:44.634 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:07:44.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2335576936, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:07:44.784 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:07:44.784 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:44.784 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:07:44.784 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:07:44.784 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:44.784 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:44.784 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:44.784 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:07:44.794 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:07:44.804 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:44.804 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 06:07:44.984 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:07:44.984 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:07:45.034 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:45.044 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:07:45.054 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:45.054 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:45.054 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:07:45.054 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 06:07:46.004 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:46.004 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:07:46.014 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:46.014 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:46.044 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:46.044 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:46.044 -07 000000461 INF: Y Motor: Moved to 69.8628 after 1465 ms (table move)
17-03-18 06:07:46.044 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135743 mm (DAC = 29653)
17-03-18 06:07:46.044 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.054 -07 000000437 INF: FPGA: Recv ZSGSRD 30418
17-03-18 06:07:46.054 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:07:46.054 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.054 -07 000000579 INF: FPGA: Recv ZSGSRD 30424
17-03-18 06:07:46.064 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.064 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30421
17-03-18 06:07:46.074 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.074 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30416
17-03-18 06:07:46.084 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.084 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30410
17-03-18 06:07:46.094 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.094 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.094 -07 000000579 INF: FPGA: Recv ZSGSRD 30419
17-03-18 06:07:46.104 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.104 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.104 -07 000000579 INF: FPGA: Recv ZSGSRD 30416
17-03-18 06:07:46.114 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.114 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.114 -07 000000512 INF: FPGA: Recv ZSGSRD 30422
17-03-18 06:07:46.124 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.124 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.124 -07 000000512 INF: FPGA: Recv ZSGSRD 30423
17-03-18 06:07:46.134 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.134 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:46.134 -07 000000579 INF: FPGA: Recv ZSGSRD 30420
17-03-18 06:07:46.144 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.144 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:46.144 -07 000000461 INF: FPGA: Recv ZPIEZORD 26240
17-03-18 06:07:46.154 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -9.2 V.
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30419 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30410 (-134.9 uncal um), Max = 30424 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30419, posNoise = 5, negNoise = 9
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: After move to -0.135743, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: Settle wait time = 1468 ms, measure time = 103 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:07:46.154 -07 000000629 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:46.204 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 06:07:46.204 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:46.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:46.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:46.204 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:46.204 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:46.204 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:46.204 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:46.204 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:46.204 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:46.214 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:46.214 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:46.214 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:07:46.214 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:07:46.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:46.264 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:46.564 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:46.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:46.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:46.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387874264, 0x0, 559484976) start.
17-03-18 06:07:46.604 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:46.604 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:46.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:46.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387874264, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:07:46.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:46.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:46.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:07:46.704 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:46.704 -07 000000437 INF: Autofocus start
17-03-18 06:07:46.704 -07 000000437 INF: MeasureProfile start
17-03-18 06:07:46.704 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:46.714 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:46.714 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:46.724 -07 000000437 INF: MeasureProfile done
17-03-18 06:07:46.724 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:07:46.724 -07 000000437 INF: Autofocus finished
17-03-18 06:07:46.834 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:46.914 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:46.914 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:46.914 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135741461151362. ----------
17-03-18 06:07:46.914 -07 000000610 INF: Cycle	145	Tile	13	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:46.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28177, sync = True, waitForSettling = True)
17-03-18 06:07:46.924 -07 000000610 INF: Z Motor: Moving to -0.128986 mm, started at -0.135741 mm, distance = 6.76 um
17-03-18 06:07:46.924 -07 000000610 INF: FPGA: Xmit ZDACW 28177\n [Z Motor]
17-03-18 06:07:46.924 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:07:46.934 -07 000000610 INF: FPGA: 'ZDACW 28177' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:46.934 -07 000000437 INF: FPGA: Recv ZDACR 28177
17-03-18 06:07:46.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:46.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.094 -07 000000585 INF: FPGA: Recv ZSGSRD 29367
17-03-18 06:07:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.104 -07 000000461 INF: FPGA: Recv ZSGSRD 29369
17-03-18 06:07:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.114 -07 000000437 INF: FPGA: Recv ZSGSRD 29372
17-03-18 06:07:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29366
17-03-18 06:07:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.134 -07 000000585 INF: FPGA: Recv ZSGSRD 29365
17-03-18 06:07:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.144 -07 000000579 INF: FPGA: Recv ZSGSRD 29371
17-03-18 06:07:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.154 -07 000000437 INF: FPGA: Recv ZSGSRD 29368
17-03-18 06:07:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29366
17-03-18 06:07:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29366
17-03-18 06:07:47.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:47.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29367
17-03-18 06:07:47.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:47.194 -07 000000626 INF: FPGA: Recv ZPIEZORD 24804
17-03-18 06:07:47.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:47.204 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -10.0 V.
17-03-18 06:07:47.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29368 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29367 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29365 (-128.2 uncal um), Max = 29372 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:07:47.204 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29368, posNoise = 4, negNoise = 3
17-03-18 06:07:47.204 -07 000000610 INF: Z Motor: After move to -0.128986, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:47.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:07:47.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:47.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:47.204 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:47.204 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:47.204 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:47.204 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:47.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:47.204 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:47.204 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:07:47.204 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:47.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:07:47.204 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:47.214 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:47.214 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:47.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:47.214 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:47.224 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:07:47.224 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:07:47.224 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:07:47.224 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:07:47.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28354 150\n [Camera]
17-03-18 06:07:47.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:47.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:47.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:47.874 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:47.884 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:47.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:07:47.884 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:47.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:47.884 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:47.884 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:47.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:07:48.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28354 837
17-03-18 06:07:48.224 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:48.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:07:48.284 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:07:48.284 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:48.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:07:48.284 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:07:48.284 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:48.284 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:48.284 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:07:48.284 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:48.294 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:07:48.434 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:48.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:48.434 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:48.434 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:48.434 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:07:48.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:48.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:48.444 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:48.444 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:48.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:07:48.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:07:48.634 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:48.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28354 150' command took 2 ms to send, 1400 ms to get response, and 1404 ms overall
17-03-18 06:07:48.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:48.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.128989614190371. ------
17-03-18 06:07:48.634 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:48.634 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13542 mm
17-03-18 06:07:48.634 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:48.634 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:48.634 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:07:48.634 -07 000000569 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:07:48.634 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29583, sync = True, waitForSettling = False)
17-03-18 06:07:48.634 -07 000000579 INF: Z Motor: Moving to -0.135422 mm, started at -0.128990 mm, distance = -6.43 um
17-03-18 06:07:48.644 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:48.644 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:48.644 -07 000000585 INF: FPGA: Recv YRDPOS 143080
17-03-18 06:07:48.654 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:48.654 -07 000000569 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:48.654 -07 000000579 INF: FPGA: Xmit ZDACW 29583\n [Z Motor]
17-03-18 06:07:48.774 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:07:48.774 -07 000000569 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:48.774 -07 000000569 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:07:48.784 -07 000000579 INF: FPGA: 'ZDACW 29583' command took 121 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 06:07:48.784 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:48.794 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:48.804 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:48.804 -07 000000382 INF: FPGA: Recv ZDACR 29583
17-03-18 06:07:48.814 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:48.814 -07 000000579 INF: Z Motor: MoveAbsStepped took 170 ms (did NOT wait for settling yet))
17-03-18 06:07:48.844 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:07:48.844 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:07:48.844 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:48.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:07:48.844 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:07:48.844 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:48.844 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:48.844 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:48.844 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:07:48.854 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:07:48.984 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:48.984 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 348 ms overall
17-03-18 06:07:49.164 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:07:49.164 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:07:49.224 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:49.224 -07 000000424 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:07:49.234 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:49.234 -07 000000569 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:49.234 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:07:49.234 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-18 06:07:49.304 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.999021,
17-03-18 06:07:50.184 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:50.184 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:07:50.194 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:50.194 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:50.224 -07 000000569 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:50.224 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:07:50.224 -07 000000569 INF: Y Motor: Moved to 70.6880 after 1584 ms (table move)
17-03-18 06:07:50.224 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135422 mm (DAC = 29583)
17-03-18 06:07:50.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.224 -07 000000585 INF: FPGA: Recv ZSGSRD 30378
17-03-18 06:07:50.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:50.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.234 -07 000000629 INF: FPGA: Recv ZSGSRD 30368
17-03-18 06:07:50.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.244 -07 000000629 INF: FPGA: Recv ZSGSRD 30367
17-03-18 06:07:50.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.254 -07 000000585 INF: FPGA: Recv ZSGSRD 30372
17-03-18 06:07:50.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.264 -07 000000629 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:07:50.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.274 -07 000000629 INF: FPGA: Recv ZSGSRD 30370
17-03-18 06:07:50.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.284 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.284 -07 000000569 INF: FPGA: Recv ZSGSRD 30369
17-03-18 06:07:50.294 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.294 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.294 -07 000000569 INF: FPGA: Recv ZSGSRD 30377
17-03-18 06:07:50.304 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.304 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.304 -07 000000585 INF: FPGA: Recv ZSGSRD 30365
17-03-18 06:07:50.314 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.314 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:50.314 -07 000000629 INF: FPGA: Recv ZSGSRD 30371
17-03-18 06:07:50.324 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.324 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:50.324 -07 000000569 INF: FPGA: Recv ZPIEZORD 26181
17-03-18 06:07:50.334 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.2 V.
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30370 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30370 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30364 (-134.6 uncal um), Max = 30378 (-134.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30370, posNoise = 8, negNoise = 6
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: After move to -0.135422, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: Settle wait time = 1587 ms, measure time = 104 ms (allowed 150 ms), total time = 1691 ms
17-03-18 06:07:50.334 -07 000000437 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:50.384 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1744 ms
17-03-18 06:07:50.384 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:50.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:50.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:50.384 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:50.384 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:50.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:50.384 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:50.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:50.384 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:50.394 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:50.394 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:50.404 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:07:50.404 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:07:50.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:50.454 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:50.754 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:50.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:50.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:50.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:50.794 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:50.794 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:50.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:07:50.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:07:50.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:50.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:50.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:07:50.894 -07 000000629 INF: Autofocus start
17-03-18 06:07:50.894 -07 000000629 INF: MeasureProfile start
17-03-18 06:07:50.894 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:50.894 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:50.904 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:50.904 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:50.904 -07 000000629 INF: MeasureProfile done
17-03-18 06:07:50.904 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:07:50.904 -07 000000629 INF: Autofocus finished
17-03-18 06:07:51.104 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:51.104 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 06:07:51.114 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135426674756415. ----------
17-03-18 06:07:51.114 -07 000000610 INF: Cycle	145	Tile	14	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:51.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28090, sync = True, waitForSettling = True)
17-03-18 06:07:51.114 -07 000000610 INF: Z Motor: Moving to -0.128588 mm, started at -0.135427 mm, distance = 6.84 um
17-03-18 06:07:51.114 -07 000000610 INF: FPGA: Xmit ZDACW 28090\n [Z Motor]
17-03-18 06:07:51.114 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:07:51.124 -07 000000610 INF: FPGA: 'ZDACW 28090' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:51.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:51.124 -07 000000585 INF: FPGA: Recv ZDACR 28090
17-03-18 06:07:51.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.284 -07 000000438 INF: FPGA: Recv ZSGSRD 29309
17-03-18 06:07:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.294 -07 000000569 INF: FPGA: Recv ZSGSRD 29305
17-03-18 06:07:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.304 -07 000000437 INF: FPGA: Recv ZSGSRD 29309
17-03-18 06:07:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29306
17-03-18 06:07:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.324 -07 000000437 INF: FPGA: Recv ZSGSRD 29312
17-03-18 06:07:51.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.334 -07 000000629 INF: FPGA: Recv ZSGSRD 29304
17-03-18 06:07:51.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.344 -07 000000437 INF: FPGA: Recv ZSGSRD 29309
17-03-18 06:07:51.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.354 -07 000000438 INF: FPGA: Recv ZSGSRD 29310
17-03-18 06:07:51.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.364 -07 000000437 INF: FPGA: Recv ZSGSRD 29309
17-03-18 06:07:51.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:51.374 -07 000000438 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:07:51.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:51.384 -07 000000437 INF: FPGA: Recv ZPIEZORD 24797
17-03-18 06:07:51.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:51.394 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.9 V.
17-03-18 06:07:51.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29307 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29309 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29301 (-127.8 uncal um), Max = 29312 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:07:51.394 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29307, posNoise = 5, negNoise = 6
17-03-18 06:07:51.394 -07 000000610 INF: Z Motor: After move to -0.128588, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:51.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:07:51.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:51.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:51.394 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:51.394 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:51.394 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:51.394 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:51.394 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:51.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:51.394 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:51.394 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:51.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:51.394 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:51.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:51.404 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:51.404 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:51.404 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:51.414 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:07:51.414 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:07:51.414 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:07:51.414 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:07:51.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28267 150\n [Camera]
17-03-18 06:07:51.614 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:51.834 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:52.064 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:52.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:52.064 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:52.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:52.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:52.064 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:52.074 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:52.074 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:07:52.074 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:52.074 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:07:52.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28267 837
17-03-18 06:07:52.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 988
17-03-18 06:07:52.444 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:07:52.444 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:07:52.444 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:52.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:07:52.444 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:07:52.444 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:52.454 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:07:52.454 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:07:52.454 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:07:52.454 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:07:52.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:52.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:52.624 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:52.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:52.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:52.624 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:52.634 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:52.634 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:07:52.634 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:52.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:07:52.814 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:52.814 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:52.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28267 150' command took 2 ms to send, 1396 ms to get response, and 1403 ms overall
17-03-18 06:07:52.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:52.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128597737249723. ------
17-03-18 06:07:52.944 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13538 mm
17-03-18 06:07:52.944 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:52.944 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:52.944 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:07:52.944 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:07:52.944 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:52.944 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29574, sync = True, waitForSettling = False)
17-03-18 06:07:52.944 -07 000000626 INF: Z Motor: Moving to -0.135381 mm, started at -0.128598 mm, distance = -6.78 um
17-03-18 06:07:52.954 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:52.954 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:52.954 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:07:52.964 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:07:52.964 -07 000000467 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:52.964 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:52.964 -07 000000467 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:07:52.964 -07 000000626 INF: FPGA: Xmit ZDACW 29574\n [Z Motor]
17-03-18 06:07:52.964 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:07:52.974 -07 000000626 INF: FPGA: 'ZDACW 29574' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:07:52.974 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:52.984 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:52.994 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:52.994 -07 000000592 INF: FPGA: Recv ZDACR 29574
17-03-18 06:07:53.004 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:07:53.004 -07 000000626 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:07:53.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:07:53.014 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:07:53.014 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:53.014 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:07:53.014 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:07:53.014 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:53.024 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:53.024 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:07:53.024 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:53.024 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:07:53.174 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:53.174 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:07:53.354 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:07:53.354 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:07:53.404 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:53.414 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:07:53.414 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:07:53.414 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:53.414 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:07:53.414 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 06:07:54.364 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:54.364 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:07:54.374 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:54.374 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:54.404 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:54.404 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:07:54.404 -07 000000467 INF: Y Motor: Moved to 71.5181 after 1459 ms (table move)
17-03-18 06:07:54.404 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135381 mm (DAC = 29574)
17-03-18 06:07:54.404 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.414 -07 000000606 INF: FPGA: Recv ZSGSRD 30362
17-03-18 06:07:54.414 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:07:54.414 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30361
17-03-18 06:07:54.424 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.424 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.424 -07 000000606 INF: FPGA: Recv ZSGSRD 30369
17-03-18 06:07:54.434 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.434 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:07:54.444 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.444 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.444 -07 000000606 INF: FPGA: Recv ZSGSRD 30360
17-03-18 06:07:54.454 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.454 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.454 -07 000000569 INF: FPGA: Recv ZSGSRD 30360
17-03-18 06:07:54.464 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.464 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.464 -07 000000447 INF: FPGA: Recv ZSGSRD 30360
17-03-18 06:07:54.474 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.474 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.474 -07 000000569 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:07:54.484 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.484 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30359
17-03-18 06:07:54.494 -07 000000437 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.494 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:54.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:07:54.504 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.504 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:54.504 -07 000000629 INF: FPGA: Recv ZPIEZORD 26181
17-03-18 06:07:54.514 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.2 V.
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30363 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30359 (-134.6 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30363, posNoise = 6, negNoise = 4
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: After move to -0.135381, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: Settle wait time = 1461 ms, measure time = 103 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:07:54.514 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:54.564 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:07:54.564 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:54.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:54.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:54.564 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:54.564 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:54.564 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:54.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:54.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:07:54.564 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:54.574 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:54.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:54.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:07:54.574 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:07:54.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:54.624 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:54.664 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.981281,
17-03-18 06:07:54.924 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:54.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:54.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:54.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:07:54.964 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:54.964 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:54.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:07:55.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:07:55.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:55.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:07:55.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:07:55.064 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:55.064 -07 000000629 INF: Autofocus start
17-03-18 06:07:55.064 -07 000000629 INF: MeasureProfile start
17-03-18 06:07:55.064 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:55.074 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:07:55.074 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:55.074 -07 000000629 INF: MeasureProfile done
17-03-18 06:07:55.074 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:07:55.074 -07 000000629 INF: Autofocus finished
17-03-18 06:07:55.274 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:55.274 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:55.274 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135381705271423. ----------
17-03-18 06:07:55.284 -07 000000610 INF: Cycle	145	Tile	15	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:55.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-18 06:07:55.284 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.135382 mm, distance = 6.84 um
17-03-18 06:07:55.284 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-18 06:07:55.284 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:07:55.294 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:55.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:55.294 -07 000000467 INF: FPGA: Recv ZDACR 28081
17-03-18 06:07:55.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:07:55.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:55.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.454 -07 000000569 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:07:55.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.464 -07 000000467 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:07:55.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.474 -07 000000447 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:07:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.484 -07 000000447 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:07:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.494 -07 000000447 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:07:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.504 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:07:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.514 -07 000000629 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:07:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.524 -07 000000447 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:07:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.534 -07 000000447 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:07:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:55.544 -07 000000569 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:07:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:55.554 -07 000000467 INF: FPGA: Recv ZPIEZORD 24816
17-03-18 06:07:55.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:55.564 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.8 V.
17-03-18 06:07:55.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29299 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29297 (-127.8 uncal um), Max = 29301 (-127.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:07:55.564 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29299, posNoise = 2, negNoise = 2
17-03-18 06:07:55.564 -07 000000610 INF: Z Motor: After move to -0.128547, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:55.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:07:55.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:55.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:55.564 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:55.564 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:55.564 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:55.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:55.564 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:55.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:55.564 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:55.564 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:55.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:55.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:55.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:07:55.574 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:55.574 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:55.574 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:55.584 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:07:55.584 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:07:55.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:07:55.584 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:07:55.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28258 150\n [Camera]
17-03-18 06:07:55.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:07:56.234 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:07:56.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:07:56.234 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:56.234 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:07:56.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:07:56.244 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:56.244 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:56.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:07:56.244 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:56.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:07:56.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28258 837
17-03-18 06:07:56.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:07:56.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:07:56.634 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:07:56.634 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:56.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:07:56.634 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:07:56.634 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:56.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:56.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:07:56.644 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:56.644 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:07:56.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:07:56.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:07:56.794 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:07:56.794 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:07:56.794 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:07:56.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:07:56.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:07:56.804 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:07:56.804 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:07:56.804 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2335576936, 0x0, 418435064) start.
17-03-18 06:07:56.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:07:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:07:56.984 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:07:56.984 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:07:56.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28258 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-18 06:07:56.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:07:56.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128546343552589. ------
17-03-18 06:07:56.994 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:56.994 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13490 mm
17-03-18 06:07:56.994 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:07:56.994 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:07:56.994 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:07:56.994 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29468, sync = True, waitForSettling = False)
17-03-18 06:07:56.994 -07 000000569 INF: Z Motor: Moving to -0.134896 mm, started at -0.128546 mm, distance = -6.35 um
17-03-18 06:07:56.994 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:57.004 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:07:57.004 -07 000000569 INF: FPGA: Xmit ZDACW 29468\n [Z Motor]
17-03-18 06:07:57.004 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:07:57.014 -07 000000569 INF: FPGA: 'ZDACW 29468' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:07:57.014 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:57.014 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:07:57.024 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:07:57.024 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:07:57.024 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:57.024 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:07:57.024 -07 000000467 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:07:57.034 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:57.034 -07 000000438 INF: FPGA: Recv ZDACR 29468
17-03-18 06:07:57.044 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:07:57.044 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:07:57.044 -07 000000569 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:07:57.194 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:07:57.194 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:07:57.194 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:57.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2335576936, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:07:57.204 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:07:57.204 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:57.204 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:07:57.204 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:07:57.204 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:07:57.214 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:07:57.224 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:07:57.224 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:07:57.414 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:07:57.414 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:07:57.474 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:57.474 -07 000000569 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:07:57.484 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:57.484 -07 000000467 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:57.484 -07 000000467 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:07:57.484 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 06:07:58.434 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:07:58.434 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:07:58.444 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:58.444 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:07:58.474 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:07:58.474 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:07:58.474 -07 000000467 INF: Y Motor: Moved to 72.3491 after 1475 ms (table move)
17-03-18 06:07:58.474 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134896 mm (DAC = 29468)
17-03-18 06:07:58.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.474 -07 000000581 INF: FPGA: Recv ZSGSRD 30297
17-03-18 06:07:58.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:07:58.484 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.484 -07 000000512 INF: FPGA: Recv ZSGSRD 30288
17-03-18 06:07:58.494 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.494 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30278
17-03-18 06:07:58.504 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.504 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.504 -07 000000437 INF: FPGA: Recv ZSGSRD 30287
17-03-18 06:07:58.514 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.514 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.514 -07 000000581 INF: FPGA: Recv ZSGSRD 30289
17-03-18 06:07:58.524 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.524 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.524 -07 000000581 INF: FPGA: Recv ZSGSRD 30291
17-03-18 06:07:58.534 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.534 -07 000000512 INF: FPGA: Recv ZSGSRD 30285
17-03-18 06:07:58.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.544 -07 000000581 INF: FPGA: Recv ZSGSRD 30289
17-03-18 06:07:58.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.554 -07 000000512 INF: FPGA: Recv ZSGSRD 30290
17-03-18 06:07:58.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:58.564 -07 000000581 INF: FPGA: Recv ZSGSRD 30288
17-03-18 06:07:58.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.574 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:58.574 -07 000000437 INF: FPGA: Recv ZPIEZORD 26093
17-03-18 06:07:58.584 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.2 V.
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30288 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30288 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30278 (-134.0 uncal um), Max = 30297 (-134.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30288, posNoise = 9, negNoise = 10
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: After move to -0.134896, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: Settle wait time = 1479 ms, measure time = 104 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:07:58.584 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:07:58.634 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:07:58.634 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:07:58.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:58.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:58.634 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:58.634 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:58.634 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:07:58.634 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:58.634 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:58.634 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:07:58.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:07:58.644 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:07:58.654 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:07:58.654 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:07:58.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:07:58.704 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:07:59.004 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:07:59.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:07:59.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:07:59.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370999200, 0x0, 559484976) start.
17-03-18 06:07:59.044 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:07:59.044 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:07:59.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:07:59.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370999200, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:07:59.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:07:59.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:07:59.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:07:59.144 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:07:59.144 -07 000000437 INF: Autofocus start
17-03-18 06:07:59.144 -07 000000437 INF: MeasureProfile start
17-03-18 06:07:59.144 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:07:59.154 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:07:59.154 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:07:59.164 -07 000000437 INF: MeasureProfile done
17-03-18 06:07:59.164 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:07:59.164 -07 000000437 INF: Autofocus finished
17-03-18 06:07:59.354 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:07:59.354 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:07:59.354 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134899889360791. ----------
17-03-18 06:07:59.354 -07 000000610 INF: Cycle	145	Tile	16	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:07:59.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27993, sync = True, waitForSettling = True)
17-03-18 06:07:59.364 -07 000000610 INF: Z Motor: Moving to -0.128144 mm, started at -0.134900 mm, distance = 6.76 um
17-03-18 06:07:59.364 -07 000000610 INF: FPGA: Xmit ZDACW 27993\n [Z Motor]
17-03-18 06:07:59.364 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:07:59.374 -07 000000610 INF: FPGA: 'ZDACW 27993' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:07:59.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:07:59.374 -07 000000437 INF: FPGA: Recv ZDACR 27993
17-03-18 06:07:59.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:07:59.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.534 -07 000000437 INF: FPGA: Recv ZSGSRD 29235
17-03-18 06:07:59.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:07:59.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.544 -07 000000512 INF: FPGA: Recv ZSGSRD 29243
17-03-18 06:07:59.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.554 -07 000000512 INF: FPGA: Recv ZSGSRD 29236
17-03-18 06:07:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.564 -07 000000502 INF: FPGA: Recv ZSGSRD 29236
17-03-18 06:07:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.574 -07 000000581 INF: FPGA: Recv ZSGSRD 29235
17-03-18 06:07:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.584 -07 000000437 INF: FPGA: Recv ZSGSRD 29236
17-03-18 06:07:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.594 -07 000000437 INF: FPGA: Recv ZSGSRD 29239
17-03-18 06:07:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29234
17-03-18 06:07:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.614 -07 000000581 INF: FPGA: Recv ZSGSRD 29237
17-03-18 06:07:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:07:59.624 -07 000000437 INF: FPGA: Recv ZSGSRD 29236
17-03-18 06:07:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:07:59.634 -07 000000512 INF: FPGA: Recv ZPIEZORD 24718
17-03-18 06:07:59.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:07:59.644 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.9 V.
17-03-18 06:07:59.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29237 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29234 (-127.4 uncal um), Max = 29243 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:07:59.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29237, posNoise = 6, negNoise = 3
17-03-18 06:07:59.644 -07 000000610 INF: Z Motor: After move to -0.128144, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:07:59.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:07:59.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:07:59.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:07:59.644 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:07:59.644 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:07:59.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:07:59.644 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:07:59.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:07:59.644 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:07:59.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:07:59.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:07:59.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:07:59.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:07:59.654 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:07:59.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:07:59.654 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:07:59.654 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:07:59.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:07:59.664 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:07:59.664 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:07:59.664 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:07:59.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28169 150\n [Camera]
17-03-18 06:07:59.864 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:08:00.024 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.983999,
17-03-18 06:08:00.314 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:08:00.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:08:00.314 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:00.314 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:00.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 06:08:00.314 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:08:00.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:08:00.324 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:00.324 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:00.324 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:08:00.514 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28169 840
17-03-18 06:08:00.654 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:08:00.694 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:08:00.694 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:08:00.694 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:00.704 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:08:00.704 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:08:00.704 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:00.704 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:00.704 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:08:00.704 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:00.714 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:08:00.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:08:00.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:08:00.874 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:00.874 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:00.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:08:00.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:08:00.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:08:00.874 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:00.874 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:00.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:08:01.064 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-18 06:08:01.064 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:08:01.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28169 150' command took 2 ms to send, 1396 ms to get response, and 1404 ms overall
17-03-18 06:08:01.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:08:01.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.1281480423998. ------
17-03-18 06:08:01.074 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13470 mm
17-03-18 06:08:01.074 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:08:01.074 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:01.204 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:01.204 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 125 ms to send, 0 ms to get response, and 128 ms overall
17-03-18 06:08:01.204 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:08:01.204 -07 000000461 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:08:01.204 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:01.204 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29425, sync = True, waitForSettling = False)
17-03-18 06:08:01.204 -07 000000467 INF: Z Motor: Moving to -0.134699 mm, started at -0.128148 mm, distance = -6.55 um
17-03-18 06:08:01.204 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:08:01.214 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:08:01.214 -07 000000467 INF: FPGA: Xmit ZDACW 29425\n [Z Motor]
17-03-18 06:08:01.214 -07 000000461 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:01.214 -07 000000461 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:08:01.214 -07 000000461 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:08:01.214 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:08:01.224 -07 000000467 INF: FPGA: 'ZDACW 29425' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:08:01.224 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:08:01.234 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:08:01.244 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:01.244 -07 000000512 INF: FPGA: Recv ZDACR 29425
17-03-18 06:08:01.254 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:08:01.254 -07 000000467 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:08:01.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:08:01.284 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:08:01.284 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:01.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:08:01.284 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:08:01.284 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:01.284 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:01.284 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:08:01.284 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:08:01.294 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:08:01.424 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:08:01.424 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:08:01.604 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:08:01.604 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:08:01.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:01.664 -07 000000592 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:08:01.664 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:08:01.664 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:01.664 -07 000000461 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:08:01.664 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-18 06:08:01.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:08:02.614 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:02.614 -07 000000438 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:08:02.624 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:08:02.624 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:02.654 -07 000000461 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:08:02.654 -07 000000461 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:08:02.654 -07 000000461 INF: Y Motor: Moved to 73.1753 after 1451 ms (table move)
17-03-18 06:08:02.654 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134699 mm (DAC = 29425)
17-03-18 06:08:02.654 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.654 -07 000000438 INF: FPGA: Recv ZSGSRD 30256
17-03-18 06:08:02.664 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:08:02.664 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.664 -07 000000438 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:08:02.674 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.674 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.674 -07 000000461 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:08:02.684 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.684 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.684 -07 000000461 INF: FPGA: Recv ZSGSRD 30259
17-03-18 06:08:02.694 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.694 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.694 -07 000000592 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:08:02.704 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.704 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.704 -07 000000438 INF: FPGA: Recv ZSGSRD 30260
17-03-18 06:08:02.714 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.714 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.714 -07 000000461 INF: FPGA: Recv ZSGSRD 30255
17-03-18 06:08:02.724 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.724 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.724 -07 000000461 INF: FPGA: Recv ZSGSRD 30246
17-03-18 06:08:02.734 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.734 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.734 -07 000000461 INF: FPGA: Recv ZSGSRD 30259
17-03-18 06:08:02.744 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.744 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:02.744 -07 000000438 INF: FPGA: Recv ZSGSRD 30253
17-03-18 06:08:02.754 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.754 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:02.754 -07 000000438 INF: FPGA: Recv ZPIEZORD 26108
17-03-18 06:08:02.764 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.1 V.
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30256 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30257 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30246 (-133.8 uncal um), Max = 30260 (-133.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30256, posNoise = 4, negNoise = 10
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: After move to -0.134699, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 06:08:02.764 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:08:02.814 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 06:08:02.814 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:08:02.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:02.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:02.814 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:02.814 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:02.814 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:08:02.814 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:02.814 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:08:02.814 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:08:02.824 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:08:02.824 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:08:02.834 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:08:02.834 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:08:02.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:08:02.884 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:08:03.184 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:08:03.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:08:03.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:08:03.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:08:03.224 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:08:03.224 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:08:03.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:08:03.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:08:03.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:03.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:08:03.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:08:03.324 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:03.324 -07 000000461 INF: Autofocus start
17-03-18 06:08:03.324 -07 000000461 INF: MeasureProfile start
17-03-18 06:08:03.324 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:03.334 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:08:03.334 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:08:03.334 -07 000000461 INF: MeasureProfile done
17-03-18 06:08:03.334 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:08:03.334 -07 000000461 INF: Autofocus finished
17-03-18 06:08:03.534 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:08:03.534 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:08:03.534 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134694314572255. ----------
17-03-18 06:08:03.544 -07 000000610 INF: Cycle	145	Tile	17	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:08:03.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27920, sync = True, waitForSettling = True)
17-03-18 06:08:03.544 -07 000000610 INF: Z Motor: Moving to -0.127810 mm, started at -0.134694 mm, distance = 6.88 um
17-03-18 06:08:03.544 -07 000000610 INF: FPGA: Xmit ZDACW 27920\n [Z Motor]
17-03-18 06:08:03.544 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:08:03.554 -07 000000610 INF: FPGA: 'ZDACW 27920' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:08:03.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:03.554 -07 000000438 INF: FPGA: Recv ZDACR 27920
17-03-18 06:08:03.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:08:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.714 -07 000000438 INF: FPGA: Recv ZSGSRD 29188
17-03-18 06:08:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:08:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.724 -07 000000592 INF: FPGA: Recv ZSGSRD 29186
17-03-18 06:08:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.734 -07 000000592 INF: FPGA: Recv ZSGSRD 29181
17-03-18 06:08:03.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.744 -07 000000502 INF: FPGA: Recv ZSGSRD 29191
17-03-18 06:08:03.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:08:03.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.754 -07 000000461 INF: FPGA: Recv ZSGSRD 29185
17-03-18 06:08:03.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.764 -07 000000502 INF: FPGA: Recv ZSGSRD 29187
17-03-18 06:08:03.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.774 -07 000000438 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:08:03.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.784 -07 000000502 INF: FPGA: Recv ZSGSRD 29182
17-03-18 06:08:03.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29184
17-03-18 06:08:03.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:03.804 -07 000000592 INF: FPGA: Recv ZSGSRD 29176
17-03-18 06:08:03.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:03.814 -07 000000461 INF: FPGA: Recv ZPIEZORD 24645
17-03-18 06:08:03.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:03.824 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -10.0 V.
17-03-18 06:08:03.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29185 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29186 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29176 (-127.0 uncal um), Max = 29191 (-127.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:08:03.824 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29185, posNoise = 6, negNoise = 9
17-03-18 06:08:03.824 -07 000000610 INF: Z Motor: After move to -0.127810, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:03.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:08:03.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:03.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:03.824 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:03.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:03.824 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:08:03.824 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:03.824 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:08:03.824 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:08:03.824 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:08:03.824 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:08:03.824 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:08:03.824 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:08:03.824 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:08:03.834 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:08:03.834 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:08:03.834 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:08:03.834 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:08:03.834 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:08:03.844 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:08:03.844 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:08:03.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28097 150\n [Camera]
17-03-18 06:08:04.044 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:08:04.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:08:04.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:08:04.494 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:04.504 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:08:04.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:08:04.504 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:04.504 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:04.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:08:04.504 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:04.504 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:08:04.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28097 837
17-03-18 06:08:04.834 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:08:04.874 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:08:04.884 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:08:04.884 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:04.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:08:04.884 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:08:04.884 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:04.884 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:08:04.884 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:08:04.884 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:08:04.894 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:08:05.054 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:08:05.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:08:05.054 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:05.064 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:08:05.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:08:05.064 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:05.064 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:05.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:08:05.074 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:05.074 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) start.
17-03-18 06:08:05.244 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:08:05.244 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:08:05.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28097 150' command took 2 ms to send, 1399 ms to get response, and 1404 ms overall
17-03-18 06:08:05.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:08:05.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127813983368429. ------
17-03-18 06:08:05.374 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13361 mm
17-03-18 06:08:05.374 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:08:05.384 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:05.384 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29186, sync = True, waitForSettling = False)
17-03-18 06:08:05.384 -07 000000629 INF: Z Motor: Moving to -0.133605 mm, started at -0.127814 mm, distance = -5.79 um
17-03-18 06:08:05.384 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 3.996267,
17-03-18 06:08:05.384 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:08:05.384 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:08:05.384 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:05.394 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:08:05.394 -07 000000629 INF: FPGA: Xmit ZDACW 29186\n [Z Motor]
17-03-18 06:08:05.394 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:08:05.404 -07 000000629 INF: FPGA: 'ZDACW 29186' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:08:05.414 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:05.414 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-18 06:08:05.424 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:08:05.424 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:08:05.424 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:05.424 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:08:05.424 -07 000000569 INF: Y Motor: Moving 1355 steps-35
17-03-18 06:08:05.434 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:05.434 -07 000000626 INF: FPGA: Recv ZDACR 29186
17-03-18 06:08:05.444 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:08:05.444 -07 000000629 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 06:08:05.454 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:08:05.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:08:05.454 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:08:05.454 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:05.464 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:05.464 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:08:05.464 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2354124136, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:08:05.464 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:08:05.464 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:05.474 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:05.474 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:08:05.624 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:08:05.624 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 06:08:05.824 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:08:05.824 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-18 06:08:05.864 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:05.874 -07 000000629 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:08:05.874 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:08:05.874 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:05.874 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:08:05.874 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.847 mm, average velocity = 2.113 mm/sec
17-03-18 06:08:06.824 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:06.824 -07 000000629 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:08:06.834 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.834 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:06.834 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:06.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:08:06.864 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:08:06.864 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:08:06.864 -07 000000569 INF: Y Motor: Moved to 74.0078 after 1481 ms (table move)
17-03-18 06:08:06.864 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133605 mm (DAC = 29186)
17-03-18 06:08:06.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.874 -07 000000629 INF: FPGA: Recv ZSGSRD 30082
17-03-18 06:08:06.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:08:06.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.874 -07 000000629 INF: FPGA: Recv ZSGSRD 30084
17-03-18 06:08:06.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:08:06.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.884 -07 000000629 INF: FPGA: Recv ZSGSRD 30092
17-03-18 06:08:06.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.894 -07 000000569 INF: FPGA: Recv ZSGSRD 30082
17-03-18 06:08:06.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.904 -07 000000629 INF: FPGA: Recv ZSGSRD 30080
17-03-18 06:08:06.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.914 -07 000000629 INF: FPGA: Recv ZSGSRD 30084
17-03-18 06:08:06.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.924 -07 000000629 INF: FPGA: Recv ZSGSRD 30088
17-03-18 06:08:06.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.934 -07 000000569 INF: FPGA: Recv ZSGSRD 30091
17-03-18 06:08:06.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.944 -07 000000629 INF: FPGA: Recv ZSGSRD 30090
17-03-18 06:08:06.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:06.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30088
17-03-18 06:08:06.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.964 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:06.964 -07 000000629 INF: FPGA: Recv ZPIEZORD 25867
17-03-18 06:08:06.974 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.3 V.
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30086 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30086 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30080 (-132.8 uncal um), Max = 30092 (-132.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30086, posNoise = 6, negNoise = 6
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: After move to -0.133605, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: Settle wait time = 1487 ms, measure time = 103 ms (allowed 150 ms), total time = 1590 ms
17-03-18 06:08:06.974 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:08:07.024 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms
17-03-18 06:08:07.024 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:08:07.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:07.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:07.024 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:07.024 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:07.024 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:08:07.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:07.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:08:07.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:08:07.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:08:07.034 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:08:07.034 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:08:07.034 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:08:07.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:08:07.094 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:08:07.394 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:08:07.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:08:07.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:08:07.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 06:08:07.434 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:08:07.434 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:08:07.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 393 ms overall
17-03-18 06:08:07.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:08:07.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:07.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:08:07.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:08:07.534 -07 000000569 INF: Autofocus start
17-03-18 06:08:07.534 -07 000000569 INF: MeasureProfile start
17-03-18 06:08:07.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:07.534 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:07.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:08:07.544 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:08:07.544 -07 000000569 INF: MeasureProfile done
17-03-18 06:08:07.544 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:08:07.544 -07 000000569 INF: Autofocus finished
17-03-18 06:08:07.744 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:08:07.744 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:08:07.744 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133602198508155. ----------
17-03-18 06:08:07.744 -07 000000610 INF: Cycle	145	Tile	18	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:08:07.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27710, sync = True, waitForSettling = True)
17-03-18 06:08:07.754 -07 000000610 INF: Z Motor: Moving to -0.126848 mm, started at -0.133602 mm, distance = 6.75 um
17-03-18 06:08:07.754 -07 000000610 INF: FPGA: Xmit ZDACW 27710\n [Z Motor]
17-03-18 06:08:07.754 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:08:07.764 -07 000000610 INF: FPGA: 'ZDACW 27710' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:08:07.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:07.764 -07 000000569 INF: FPGA: Recv ZDACR 27710
17-03-18 06:08:07.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:08:07.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:08:07.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:08:07.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.934 -07 000000585 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:08:07.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:08:07.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.954 -07 000000585 INF: FPGA: Recv ZSGSRD 29032
17-03-18 06:08:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.964 -07 000000569 INF: FPGA: Recv ZSGSRD 29041
17-03-18 06:08:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.974 -07 000000629 INF: FPGA: Recv ZSGSRD 29032
17-03-18 06:08:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29030
17-03-18 06:08:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:07.994 -07 000000629 INF: FPGA: Recv ZSGSRD 29036
17-03-18 06:08:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:08.004 -07 000000585 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:08:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:08.014 -07 000000467 INF: FPGA: Recv ZSGSRD 29034
17-03-18 06:08:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:08.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:08.024 -07 000000424 INF: FPGA: Recv ZPIEZORD 24437
17-03-18 06:08:08.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:08.034 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -10.1 V.
17-03-18 06:08:08.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29036 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29037 (-126.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29030 (-126.0 uncal um), Max = 29041 (-126.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:08:08.034 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29036, posNoise = 5, negNoise = 6
17-03-18 06:08:08.034 -07 000000610 INF: Z Motor: After move to -0.126848, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:08.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:08:08.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:08.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:08.034 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:08.034 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:08.034 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:08:08.034 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:08:08.034 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:08:08.034 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:08.034 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:08:08.034 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:08:08.044 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:08:08.044 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:08:08.044 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:08:08.044 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:08:08.044 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:08:08.044 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:08:08.054 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:08:08.054 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:08:08.064 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 06:08:08.064 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 06:08:08.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 27887 150\n [Camera]
17-03-18 06:08:08.264 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:08:08.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:08:08.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:08:08.724 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:08.724 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:08:08.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:08:08.724 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:08.724 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:08.724 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:08:08.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:08.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) start.
17-03-18 06:08:08.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27887 837
17-03-18 06:08:09.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:08:09.124 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:08:09.124 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:08:09.124 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:09.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2318701872, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:08:09.124 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:08:09.124 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:09.124 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:09.124 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:08:09.124 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:08:09.134 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:08:09.284 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:08:09.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:08:09.284 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:09.284 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:09.284 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:08:09.284 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:08:09.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:08:09.284 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:09.284 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:09.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:08:09.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:08:09.474 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:08:09.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 27887 150' command took 2 ms to send, 1392 ms to get response, and 1404 ms overall
17-03-18 06:08:09.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:08:09.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126856775759306. ------
17-03-18 06:08:09.474 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:09.474 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13329 mm
17-03-18 06:08:09.474 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:08:09.484 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:08:09.484 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 06:08:09.484 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:09.484 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 06:08:09.484 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29117, sync = True, waitForSettling = False)
17-03-18 06:08:09.484 -07 000000467 INF: Z Motor: Moving to -0.133289 mm, started at -0.126857 mm, distance = -6.43 um
17-03-18 06:08:09.484 -07 000000467 INF: FPGA: Xmit ZDACW 29117\n [Z Motor]
17-03-18 06:08:09.484 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:08:09.494 -07 000000467 INF: FPGA: 'ZDACW 29117' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:08:09.494 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:08:09.504 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:09.504 -07 000000606 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:08:09.514 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:08:09.514 -07 000000512 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:09.514 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:08:09.514 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:08:09.514 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:09.514 -07 000000606 INF: FPGA: Recv ZDACR 29117
17-03-18 06:08:09.524 -07 000000467 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:08:09.524 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:08:09.524 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:08:09.674 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:08:09.674 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:08:09.674 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:09.684 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:08:09.684 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:08:09.684 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:09.684 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:09.684 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:08:09.684 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:08:09.694 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:08:09.694 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 06:08:09.694 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:08:09.894 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:08:09.894 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:08:09.934 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:09.934 -07 000000585 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:08:09.944 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:08:09.944 -07 000000512 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:09.944 -07 000000512 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:08:09.944 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 06:08:10.894 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:11.314 -07 000000581 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:08:11.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 410 ms to get response, and 420 ms overall
17-03-18 06:08:11.314 -07 000000512 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:11.314 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.001704,
17-03-18 06:08:11.334 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:08:11.334 -07 000000512 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:08:11.334 -07 000000512 INF: Y Motor: Moved to 74.8315 after 1853 ms (table move)
17-03-18 06:08:11.334 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133289 mm (DAC = 29117)
17-03-18 06:08:11.354 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.354 -07 000000424 INF: FPGA: Recv ZSGSRD 30037
17-03-18 06:08:11.364 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:08:11.364 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.364 -07 000000629 INF: FPGA: Recv ZSGSRD 30042
17-03-18 06:08:11.374 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.374 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.374 -07 000000461 INF: FPGA: Recv ZSGSRD 30043
17-03-18 06:08:11.384 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.384 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.384 -07 000000424 INF: FPGA: Recv ZSGSRD 30037
17-03-18 06:08:11.394 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.394 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.394 -07 000000581 INF: FPGA: Recv ZSGSRD 30042
17-03-18 06:08:11.404 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.404 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.404 -07 000000424 INF: FPGA: Recv ZSGSRD 30034
17-03-18 06:08:11.414 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.414 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.414 -07 000000606 INF: FPGA: Recv ZSGSRD 30036
17-03-18 06:08:11.424 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.424 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30035
17-03-18 06:08:11.434 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.434 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.434 -07 000000461 INF: FPGA: Recv ZSGSRD 30040
17-03-18 06:08:11.444 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.444 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:11.444 -07 000000424 INF: FPGA: Recv ZSGSRD 30042
17-03-18 06:08:11.454 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.454 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:11.454 -07 000000629 INF: FPGA: Recv ZPIEZORD 25806
17-03-18 06:08:11.464 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.3 V.
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30039 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30038 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30034 (-132.5 uncal um), Max = 30043 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30039, posNoise = 4, negNoise = 5
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: After move to -0.133289, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: Settle wait time = 1854 ms, measure time = 122 ms (allowed 150 ms), total time = 1976 ms
17-03-18 06:08:11.464 -07 000000437 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 06:08:11.494 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2012 ms
17-03-18 06:08:11.494 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:08:11.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:11.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:11.494 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:11.494 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:08:11.494 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:11.494 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:11.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:08:11.504 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:08:11.504 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:08:11.504 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:08:11.504 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:08:11.504 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:08:11.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:08:11.554 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:08:11.834 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 144. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:08:11.854 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:08:11.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:08:11.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:08:11.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 06:08:11.894 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:08:11.894 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:08:11.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:08:11.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:08:11.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:11.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:08:11.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:08:11.994 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:08:11.994 -07 000000581 INF: Autofocus start
17-03-18 06:08:11.994 -07 000000581 INF: MeasureProfile start
17-03-18 06:08:11.994 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:08:12.004 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:08:12.004 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:08:12.004 -07 000000581 INF: MeasureProfile done
17-03-18 06:08:12.004 -07 000000581 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:08:12.004 -07 000000581 INF: Autofocus finished
17-03-18 06:08:12.204 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:08:12.204 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:08:12.204 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133300260537492. ----------
17-03-18 06:08:12.204 -07 000000610 INF: Cycle	145	Tile	19	Exposure Settings		A	452	G	217	T	217	C	452
17-03-18 06:08:12.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27642, sync = True, waitForSettling = True)
17-03-18 06:08:12.214 -07 000000610 INF: Z Motor: Moving to -0.126537 mm, started at -0.133300 mm, distance = 6.76 um
17-03-18 06:08:12.214 -07 000000610 INF: FPGA: Xmit ZDACW 27642\n [Z Motor]
17-03-18 06:08:12.214 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:08:12.224 -07 000000610 INF: FPGA: 'ZDACW 27642' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:08:12.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:08:12.224 -07 000000424 INF: FPGA: Recv ZDACR 27642
17-03-18 06:08:12.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:08:12.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.384 -07 000000461 INF: FPGA: Recv ZSGSRD 28985
17-03-18 06:08:12.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:08:12.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.394 -07 000000461 INF: FPGA: Recv ZSGSRD 28985
17-03-18 06:08:12.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.414 -07 000000424 INF: FPGA: Recv ZSGSRD 28992
17-03-18 06:08:12.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:08:12.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.444 -07 000000437 INF: FPGA: Recv ZSGSRD 28986
17-03-18 06:08:12.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:08:12.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.474 -07 000000437 INF: FPGA: Recv ZSGSRD 28988
17-03-18 06:08:12.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:08:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.484 -07 000000581 INF: FPGA: Recv ZSGSRD 28992
17-03-18 06:08:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.494 -07 000000512 INF: FPGA: Recv ZSGSRD 28984
17-03-18 06:08:12.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.504 -07 000000461 INF: FPGA: Recv ZSGSRD 28991
17-03-18 06:08:12.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.514 -07 000000437 INF: FPGA: Recv ZSGSRD 28985
17-03-18 06:08:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:08:12.524 -07 000000424 INF: FPGA: Recv ZSGSRD 28992
17-03-18 06:08:12.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:08:12.534 -07 000000512 INF: FPGA: Recv ZPIEZORD 24421
17-03-18 06:08:12.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:12.544 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -10.0 V.
17-03-18 06:08:12.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28988 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28987 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28984 (-125.8 uncal um), Max = 28992 (-125.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:08:12.544 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28988, posNoise = 4, negNoise = 4
17-03-18 06:08:12.544 -07 000000610 INF: Z Motor: After move to -0.126537, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:08:12.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 06:08:12.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:08:12.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:08:12.544 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:08:12.544 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:08:12.544 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:08:12.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:08:12.544 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:08:12.544 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:08:12.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:08:12.544 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:08:12.544 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:08:12.544 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:08:12.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:08:12.554 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:08:12.554 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:08:12.554 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:08:12.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:08:12.564 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:08:12.564 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:08:12.564 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:08:12.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 27818 150\n [Camera]
17-03-18 06:08:12.764 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:08:13.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-18 06:08:13.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-18 06:08:13.214 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:13.214 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:13.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-18 06:08:13.214 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-18 06:08:13.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-18 06:08:13.224 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:13.224 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:13.224 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:08:13.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27818 843
17-03-18 06:08:13.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-18 06:08:13.604 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:08:13.604 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:08:13.604 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:13.604 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:08:13.604 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:08:13.604 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:13.614 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:08:13.614 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:08:13.614 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:08:13.624 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:08:13.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-18 06:08:13.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-18 06:08:13.774 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:08:13.774 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:08:13.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:08:13.774 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-18 06:08:13.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-18 06:08:13.774 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:08:13.774 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:08:13.774 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:08:13.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-18 06:08:13.964 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:08:13.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 27818 150' command took 2 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-18 06:08:14.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:08:14.184 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:08:14.184 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:14.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:08:14.184 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:08:14.184 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:08:14.184 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:08:14.184 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:08:14.184 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:08:14.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:08:14.194 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:08:14.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:08:14.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:08:14.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:08:14.414 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 06:08:14.414 -07 000000610 INF: Imaging Cycle 145: ScanTilesCommand Cycle 145 time end. Duration was 172708 ms.
17-03-18 06:08:14.414 -07 000000610 INF: =================== Cycle #145 ===================
17-03-18 06:08:14.414 -07 000000610 INF: ===================  ===================
17-03-18 06:08:14.414 -07 000000629 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:08:14.424 -07 000000461 INF: FPGA: Recv EXLED1ADCR 23
17-03-18 06:08:14.424 -07 000000629 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:08:14.424 -07 000000629 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-18 06:08:14.434 -07 000000629 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 145, FrontChillerTemperature: 4.001704, FrontChillerHeatSinkTemperature: 0.522731, AmbientTemperature: 18.63806, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.2672, GreenLEDSensorTemperature: 27.29352, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-18 06:08:14.554 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.