17-03-18 06:08:14.604 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:14.604 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:08:14.604 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 06:08:14.604 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:14.614 -07 000000569 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:08:14.614 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-18 06:08:14.614 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:14.614 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:08:14.614 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:08:14.614 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:08:14.734 -07 000000606 INF: FPGA: Recv YMVTO 154378 872
17-03-18 06:08:14.734 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-18 06:08:14.734 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:08:14.734 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:08:14.734 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-18 06:08:16.674 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.030322,
17-03-18 06:08:16.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:16.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1922, R2=2001, Total=3923. Warn if over 250 bubbles per interval.
17-03-18 06:08:17.734 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:08:17.734 -07 000000629 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:08:17.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:08:17.744 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:08:17.764 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:08:17.764 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:08:17.764 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3160 ms
17-03-18 06:08:17.774 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 60° ===================
17-03-18 06:08:17.774 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:08:17.834 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:08:17.834 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-18 06:08:17.844 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:08:17.844 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 60° ===================
17-03-18 06:08:17.844 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:17.844 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:08:17.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:17.874 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:08:17.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:08:17.874 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:08:18.174 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:08:18.194 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:08:18.194 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:08:18.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:18.264 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:08:18.264 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:08:18.364 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:18.364 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:18.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:18.394 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:08:18.394 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:08:18.394 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:08:18.524 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:08:18.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:21.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:21.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:21.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 4
17-03-18 06:08:21.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=4, R2=5, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1926, R2=2006, Total=3932. Warn if over 250 bubbles per interval.
17-03-18 06:08:22.034 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.007176,
17-03-18 06:08:22.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:22.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:22.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:22.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:22.624 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:08:22.624 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:22.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:22.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:08:22.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:08:22.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:22.944 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:08:22.944 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:08:22.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:23.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:08:23.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:23.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:23.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:23.564 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:08:23.564 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:24.784 -07 000000610 INF: AsyncDelayTimer waited 1206ms
17-03-18 06:08:24.784 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:08:24.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:24.804 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:08:24.804 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:08:24.804 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:08:24.934 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:08:24.954 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:08:24.954 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:08:25.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:25.024 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:08:25.024 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:08:25.124 -07 000000610 INF: =================== Cycle #146, Pumping Reagent CMS (4) ===================
17-03-18 06:08:25.124 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:25.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:25.154 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:08:25.154 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:08:25.154 -07 000000610 INF: =================== Cycle #146, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:08:25.284 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:08:25.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:26.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:26.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:26.834 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1926, R2=2006, Total=3932. Warn if over 250 bubbles per interval.
17-03-18 06:08:27.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:27.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:27.244 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:08:27.244 -07 000000610 INF: =================== Cycle #146, Pumping Reagent CMS (4) ===================
17-03-18 06:08:27.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:27.394 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.997626,
17-03-18 06:08:27.404 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:08:27.404 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:08:27.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:27.564 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:08:27.564 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:08:27.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:27.694 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:08:27.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:28.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:28.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:28.184 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:08:28.184 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:29.404 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:08:29.404 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:08:29.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:29.424 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:08:29.424 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:08:29.424 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:08:29.574 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:08:29.594 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:08:29.594 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:08:29.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:29.664 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:08:29.664 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:08:29.764 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:29.764 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:29.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:29.794 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:08:29.794 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:08:29.794 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:08:29.924 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:08:29.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:30.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:30.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:30.864 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:08:30.864 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:30.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:31.024 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:08:31.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:08:31.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:32.034 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:32.034 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1926, R2=2006, Total=3932. Warn if over 250 bubbles per interval.
17-03-18 06:08:32.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:08:32.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:08:32.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:32.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:08:32.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:32.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:32.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:32.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:08:32.664 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:32.664 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:08:32.664 -07 000000606 INF: WaitCommand(10000) start
17-03-18 06:08:32.664 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:08:32.754 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.969015,
17-03-18 06:08:33.024 -07 000000502 INF: AsyncDelayTimer waited 353ms
17-03-18 06:08:33.024 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 06:08:33.644 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:08:33.644 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:08:33.774 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:08:33.814 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:35.344 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:35.374 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:35.794 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:35.824 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:35.824 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:08:35.824 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:08:35.824 -07 000000502 INF: ===================  ===================
17-03-18 06:08:36.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:36.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1926, R2=2006, Total=3932. Warn if over 250 bubbles per interval.
17-03-18 06:08:38.114 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.974486,
17-03-18 06:08:41.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1926, R2=2006, Total=3932. Warn if over 250 bubbles per interval.
17-03-18 06:08:42.674 -07 000000606 INF: WaitCommand(10000) end
17-03-18 06:08:42.674 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:42.674 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:42.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:42.714 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:08:42.714 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:08:42.714 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:08:42.844 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:08:42.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:43.474 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.988112,
17-03-18 06:08:46.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:08:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:08:48.834 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.016692,
17-03-18 06:08:49.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:49.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:49.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:49.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:49.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:49.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:50.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:50.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:50.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:50.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:50.844 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:08:50.844 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:50.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:51.004 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:08:51.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:08:51.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:51.164 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:08:51.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:08:51.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:51.294 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:08:51.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:51.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:51.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:51.784 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:08:51.784 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:51.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:08:53.004 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:08:53.004 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:08:53.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:53.024 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:08:53.024 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:08:53.024 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:08:53.234 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:08:53.254 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:08:53.254 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:08:53.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:53.324 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:08:53.324 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:08:53.424 -07 000000610 INF: =================== Cycle #146, Pumping Reagent IMT (1) ===================
17-03-18 06:08:53.424 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:53.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:53.454 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:08:53.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:08:53.454 -07 000000610 INF: =================== Cycle #146, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:08:53.584 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:08:53.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:54.194 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.014009,
17-03-18 06:08:55.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:55.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:55.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:55.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:55.544 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:08:55.544 -07 000000610 INF: =================== Cycle #146, Pumping Reagent IMT (1) ===================
17-03-18 06:08:55.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:55.704 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:08:55.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:08:55.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:55.864 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:08:55.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:08:55.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:55.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:08:56.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:56.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:56.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:56.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:08:56.484 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:08:56.834 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:08:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:08:57.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:08:57.704 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:08:57.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:57.724 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:08:57.724 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:08:57.724 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:08:57.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:08:57.974 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:08:57.974 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:08:58.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:08:58.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:08:58.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:08:58.144 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:58.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:08:58.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:58.174 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:08:58.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:08:58.174 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:08:58.304 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:08:58.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:08:59.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:08:59.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:08:59.244 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:08:59.244 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:08:59.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:59.404 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:08:59.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:08:59.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:08:59.554 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.000345,
17-03-18 06:08:59.564 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:08:59.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:08:59.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:08:59.694 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:09:00.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:00.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:09:00.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:00.784 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:09:00.784 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:09:00.784 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 65° ===================
17-03-18 06:09:00.784 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:09:00.784 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:09:00.784 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:09:00.794 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:09:00.794 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:09:00.794 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 06:09:00.804 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:09:00.804 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 65° ===================
17-03-18 06:09:00.804 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:09:00.804 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:09:01.834 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:05.634 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.983999,
17-03-18 06:09:06.834 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:06.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:10.994 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.005817,
17-03-18 06:09:11.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:16.354 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.03576,
17-03-18 06:09:16.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:16.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:21.714 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.026244,
17-03-18 06:09:21.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:21.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:26.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:27.074 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.008536,
17-03-18 06:09:30.814 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:09:30.814 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:09:30.814 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:09:30.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:09:30.944 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:09:30.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:09:30.944 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:09:31.074 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:09:31.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:09:31.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:09:31.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:31.684 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:09:31.684 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:09:31.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:09:31.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:31.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:31.844 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:09:31.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:09:31.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:09:32.004 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:09:32.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:09:32.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:09:32.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:09:32.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:32.434 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.007176,
17-03-18 06:09:32.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:09:32.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:32.624 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:09:32.624 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:09:33.564 -07 000000437 INF: WaitCommand(30000) start
17-03-18 06:09:33.564 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:09:33.564 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:09:33.844 -07 000000512 INF: AsyncDelayTimer waited 278ms
17-03-18 06:09:33.844 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 06:09:33.874 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:09:33.874 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:09:34.004 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:09:34.044 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:09:36.384 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 06:09:36.414 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:09:36.834 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 06:09:36.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:36.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:36.864 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:09:36.864 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:09:36.864 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:09:36.864 -07 000000512 INF: ===================  ===================
17-03-18 06:09:37.794 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.012614,
17-03-18 06:09:41.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:43.154 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.014009,
17-03-18 06:09:46.834 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:48.514 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.001704,
17-03-18 06:09:51.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:53.874 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.986717,
17-03-18 06:09:56.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:09:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:09:59.234 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.004458,
17-03-18 06:10:01.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1927, R2=2007, Total=3934. Warn if over 250 bubbles per interval.
17-03-18 06:10:03.574 -07 000000437 INF: WaitCommand(30000) end
17-03-18 06:10:03.574 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 22° ===================
17-03-18 06:10:03.574 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:10:03.574 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:10:03.584 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:10:03.584 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:10:03.584 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:10:03.584 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 06:10:03.594 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:03.594 -07 000000610 INF: =================== Cycle #146, Flow Cell Temp 22° ===================
17-03-18 06:10:03.594 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:10:03.594 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:10:03.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:10:03.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:03.634 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:10:03.634 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:10:03.634 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:10:03.764 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:10:03.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:04.594 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.001704,
17-03-18 06:10:06.834 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:10:06.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1928, R2=2007, Total=3935. Warn if over 250 bubbles per interval.
17-03-18 06:10:06.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:06.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:07.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:07.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:07.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:07.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:07.864 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:10:07.864 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:10:07.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:08.024 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:10:08.024 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:10:08.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:08.184 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:10:08.184 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:10:08.184 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:10:08.314 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:10:08.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:08.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:08.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:08.804 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:10:08.804 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:10:09.954 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.988112,
17-03-18 06:10:10.024 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:10:10.024 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:10:10.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:10.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:10:10.044 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:10:10.044 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:10:10.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:10:10.214 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:10:10.214 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:10:10.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:10.284 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:10:10.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:10:10.384 -07 000000610 INF: =================== Cycle #146, Pumping Reagent USM (2) ===================
17-03-18 06:10:10.384 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:10:10.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:10.414 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:10:10.414 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:10:10.414 -07 000000610 INF: =================== Cycle #146, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:10:10.544 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:10:10.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:11.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 06:10:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1930, R2=2010, Total=3940. Warn if over 250 bubbles per interval.
17-03-18 06:10:12.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:12.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:12.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:12.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:12.504 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:10:12.504 -07 000000610 INF: =================== Cycle #146, Pumping Reagent USM (2) ===================
17-03-18 06:10:12.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:12.664 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:10:12.664 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:10:12.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:12.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:10:12.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:10:12.824 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:10:12.954 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:10:12.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:13.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:13.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:13.444 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:10:13.444 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:10:14.664 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:10:14.664 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:10:14.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:14.684 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:10:14.684 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:10:14.684 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:10:14.834 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:10:14.854 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:10:14.854 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:10:14.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:14.924 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:10:14.924 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:10:15.024 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:10:15.024 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:10:15.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:15.054 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:10:15.054 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:10:15.054 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:10:15.184 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:10:15.224 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:15.314 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.99219,
17-03-18 06:10:16.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:16.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:16.124 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:10:16.124 -07 000000610 INF: =================== Cycle #146, Pumping Reagent PR2 (3) ===================
17-03-18 06:10:16.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:16.284 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:10:16.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:10:16.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:10:16.444 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:10:16.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:10:16.444 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:10:16.574 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:10:16.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:16.834 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:16.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1930, R2=2010, Total=3940. Warn if over 250 bubbles per interval.
17-03-18 06:10:17.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:17.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:17.064 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:10:17.064 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:10:17.064 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:10:17.064 -07 000000512 INF: WaitCommand(10000) start
17-03-18 06:10:17.064 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:10:18.284 -07 000000438 INF: AsyncDelayTimer waited 1215ms
17-03-18 06:10:18.284 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-18 06:10:18.314 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:10:18.314 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:10:18.444 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:10:18.484 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:20.014 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:20.044 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:10:20.464 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 06:10:20.494 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:10:20.494 -07 000000438 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:10:20.494 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:10:20.494 -07 000000438 INF: ===================  ===================
17-03-18 06:10:20.674 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.978563,
17-03-18 06:10:21.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:10:21.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2010, Total=3941. Warn if over 250 bubbles per interval.
17-03-18 06:10:26.034 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.009895,
17-03-18 06:10:26.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2010, Total=3941. Warn if over 250 bubbles per interval.
17-03-18 06:10:27.074 -07 000000512 INF: WaitCommand(10000) end
17-03-18 06:10:27.074 -07 000000610 INF: =================== Cycle #146, Imaging ===================
17-03-18 06:10:27.074 -07 000000610 INF: Imaging Cycle 146: ScanTilesCommand Cycle 146 time start.
17-03-18 06:10:27.074 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:10:27.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:27.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:10:27.104 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:10:27.104 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:10:27.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:10:27.424 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:10:27.424 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:10:27.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:10:27.494 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:10:27.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:27.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:27.494 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:10:27.494 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:27.514 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:10:27.514 -07 000000512 INF: FPGA: Recv EXLED1ON 
17-03-18 06:10:27.524 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:10:27.524 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:10:27.524 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23007
17-03-18 06:10:27.534 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:27.534 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23007 --> 7.4 mW (old method), or 204.0 mW (new method). Difference = 196.6 mW
17-03-18 06:10:27.534 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:10:27.534 -07 000000569 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:10:27.544 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:27.544 -07 000000438 INF: RedLED: LED was on for 19 ms
17-03-18 06:10:27.544 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 42 ms.
17-03-18 06:10:27.544 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:10:27.544 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:27.544 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:10:27.544 -07 000000512 INF: FPGA: Recv EXLED2ON 
17-03-18 06:10:27.554 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:27.554 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:10:27.554 -07 000000569 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 06:10:27.564 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:27.564 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 06:10:27.564 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:10:27.564 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:10:27.574 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:27.574 -07 000000438 INF: GreenLED: LED was on for 20 ms
17-03-18 06:10:27.574 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-18 06:10:27.574 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:10:27.574 -07 000000474 INF: FPGA: Recv EMCUR 
17-03-18 06:10:27.584 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:27.584 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:10:28.084 -07 000000438 INF: FPGA: Recv EMOUT
17-03-18 06:10:28.084 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:10:28.084 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:10:28.084 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-18 06:10:28.094 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:28.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:28.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126548413576502. ------
17-03-18 06:10:28.094 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:28.094 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17846 mm
17-03-18 06:10:28.094 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:28.094 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:28.094 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38985, sync = True, waitForSettling = False)
17-03-18 06:10:28.094 -07 000000569 INF: Z Motor: Moving to -0.178462 mm, started at -0.126548 mm, distance = -51.91 um
17-03-18 06:10:28.104 -07 000000569 INF: FPGA: Xmit ZDACW 38985\n [Z Motor]
17-03-18 06:10:28.104 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:10:28.104 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:10:28.104 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:10:28.104 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:10:28.114 -07 000000569 INF: FPGA: 'ZDACW 38985' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:28.114 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:28.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:28.124 -07 000000462 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:10:28.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:28.134 -07 000000512 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:28.134 -07 000000512 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:10:28.134 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:10:28.134 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:28.134 -07 000000437 INF: FPGA: Recv ZDACR 38985
17-03-18 06:10:28.144 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:28.144 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:10:28.144 -07 000000569 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:10:28.314 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:28.314 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:10:29.824 -07 000000569 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 06:10:29.824 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 06:10:29.824 -07 000000512 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:10:29.824 -07 000000512 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:10:29.824 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.467 mm, average velocity = 9.125 mm/sec
17-03-18 06:10:31.394 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.990831,
17-03-18 06:10:31.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:10:31.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:32.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:32.674 -07 000000438 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:10:32.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:32.684 -07 000000512 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:32.714 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:32.714 -07 000000512 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:10:32.714 -07 000000512 INF: Y Motor: Moved to 59.9092 after 4612 ms
17-03-18 06:10:32.714 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178462 mm (DAC = 38985)
17-03-18 06:10:32.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.714 -07 000000569 INF: FPGA: Recv ZSGSRD 37072
17-03-18 06:10:32.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:10:32.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.724 -07 000000512 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:10:32.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.734 -07 000000512 INF: FPGA: Recv ZSGSRD 37071
17-03-18 06:10:32.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.744 -07 000000437 INF: FPGA: Recv ZSGSRD 37079
17-03-18 06:10:32.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:32.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.754 -07 000000512 INF: FPGA: Recv ZSGSRD 37071
17-03-18 06:10:32.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.764 -07 000000447 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:10:32.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.774 -07 000000447 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:10:32.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.784 -07 000000512 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:10:32.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.794 -07 000000447 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:10:32.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:32.804 -07 000000447 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:10:32.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.814 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:32.814 -07 000000447 INF: FPGA: Recv ZPIEZORD 33314
17-03-18 06:10:32.824 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.3 V.
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37069 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37060 (-177.5 uncal um), Max = 37079 (-177.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37069, posNoise = 10, negNoise = 9
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: After move to -0.178462, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: Settle wait time = 4616 ms, measure time = 105 ms (allowed 150 ms), total time = 4721 ms
17-03-18 06:10:32.824 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:32.874 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 06:10:32.874 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:32.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:32.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:32.874 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:32.874 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:32.874 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:32.874 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:32.874 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:10:32.874 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:10:32.904 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:10:32.904 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:32.904 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:10:32.904 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:32.914 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:10:32.914 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 06:10:32.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:32.964 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:33.264 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:33.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:33.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:33.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 609420352, 0x0, 559484976) start.
17-03-18 06:10:33.304 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:33.304 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:33.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:10:33.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 609420352, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:10:33.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:33.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:10:33.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:10:33.504 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:33.504 -07 000000437 INF: Image SNR check: start
17-03-18 06:10:33.504 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:33.514 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:33.514 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:33.514 -07 000000437 INF: Image SNR check: pass  [peak (Max-Min)=124.60]
17-03-18 06:10:33.514 -07 000000437 INF: Autofocus start
17-03-18 06:10:33.514 -07 000000437 INF: MeasureProfile start
17-03-18 06:10:33.524 -07 000000437 INF: MeasureProfile done
17-03-18 06:10:33.534 -07 000000437 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:10:33.534 -07 000000437 INF: Autofocus finished
17-03-18 06:10:33.714 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:33.714 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:10:33.714 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178462471894072. ----------
17-03-18 06:10:33.714 -07 000000610 INF: Cycle	146	Tile	1	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:33.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = True)
17-03-18 06:10:33.724 -07 000000610 INF: Z Motor: Moving to -0.171664 mm, started at -0.178462 mm, distance = 6.80 um
17-03-18 06:10:33.724 -07 000000610 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-18 06:10:33.724 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:10:33.734 -07 000000610 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:33.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:33.734 -07 000000512 INF: FPGA: Recv ZDACR 37500
17-03-18 06:10:33.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:33.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.894 -07 000000437 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:10:33.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:33.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.904 -07 000000512 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:10:33.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.914 -07 000000447 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:10:33.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.924 -07 000000437 INF: FPGA: Recv ZSGSRD 36012
17-03-18 06:10:33.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.934 -07 000000424 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:10:33.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.944 -07 000000512 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:10:33.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.954 -07 000000447 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:10:33.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.964 -07 000000437 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:10:33.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.974 -07 000000424 INF: FPGA: Recv ZSGSRD 36011
17-03-18 06:10:33.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:33.984 -07 000000437 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:10:33.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:33.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:33.994 -07 000000437 INF: FPGA: Recv ZPIEZORD 31878
17-03-18 06:10:34.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:34.004 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 06:10:34.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36013 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36006 (-170.8 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:10:34.004 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 3, negNoise = 6
17-03-18 06:10:34.004 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:34.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:10:34.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:34.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:34.004 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:34.004 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:34.004 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:34.004 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:34.004 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:34.004 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:34.014 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:34.014 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:34.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:34.014 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:10:34.014 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:34.014 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:34.024 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:10:34.024 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:34.034 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:10:34.034 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:34.034 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:10:34.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:34.044 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:10:34.044 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 06:10:34.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37676 150\n [Camera]
17-03-18 06:10:34.244 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:34.704 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:34.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:34.704 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:34.704 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:34.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:34.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:34.714 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:34.714 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:10:34.714 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:34.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:10:34.894 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37676 839
17-03-18 06:10:35.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:35.104 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:10:35.104 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:10:35.104 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:35.104 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:35.104 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:10:35.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:10:35.114 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:10:35.114 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:35.124 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:10:35.124 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:10:35.264 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:10:35.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:10:35.264 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:35.374 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:10:35.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:10:35.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:35.374 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:35.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 06:10:35.384 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:35.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:10:35.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:10:35.454 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:35.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37676 150' command took 2 ms to send, 1395 ms to get response, and 1406 ms overall
17-03-18 06:10:35.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:35.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171672079660231. ------
17-03-18 06:10:35.464 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:35.464 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17793 mm
17-03-18 06:10:35.464 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:35.464 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38869, sync = True, waitForSettling = False)
17-03-18 06:10:35.464 -07 000000424 INF: Z Motor: Moving to -0.177931 mm, started at -0.171672 mm, distance = -6.26 um
17-03-18 06:10:35.464 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:35.464 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:10:35.464 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:10:35.474 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:35.474 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:35.474 -07 000000438 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:10:35.484 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:10:35.484 -07 000000424 INF: FPGA: Xmit ZDACW 38869\n [Z Motor]
17-03-18 06:10:35.484 -07 000000569 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:35.484 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:35.484 -07 000000569 INF: Y Motor: Moving 1333 steps0
17-03-18 06:10:35.484 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:10:35.494 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:35.494 -07 000000424 INF: FPGA: 'ZDACW 38869' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:10:35.504 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:35.514 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:35.514 -07 000000502 INF: FPGA: Recv ZDACR 38869
17-03-18 06:10:35.524 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:10:35.524 -07 000000424 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:10:35.694 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:35.694 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 06:10:35.784 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:10:35.784 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:10:35.784 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:10:35.784 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:35.784 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:10:35.784 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:35.784 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:35.784 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 06:10:35.784 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:35.794 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:10:35.874 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:10:35.874 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:10:35.924 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:35.924 -07 000000424 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:10:35.934 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:35.934 -07 000000569 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:35.934 -07 000000569 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:10:35.934 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec
17-03-18 06:10:36.754 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.003063,
17-03-18 06:10:36.834 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:36.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:36.884 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:36.884 -07 000000424 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:10:36.894 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:36.894 -07 000000569 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:36.924 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:36.924 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:10:36.924 -07 000000569 INF: Y Motor: Moved to 60.7319 after 1460 ms (table move)
17-03-18 06:10:36.924 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177931 mm (DAC = 38869)
17-03-18 06:10:36.924 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36982
17-03-18 06:10:36.934 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:10:36.934 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.934 -07 000000502 INF: FPGA: Recv ZSGSRD 36991
17-03-18 06:10:36.944 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:36.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.944 -07 000000502 INF: FPGA: Recv ZSGSRD 36984
17-03-18 06:10:36.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:36.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.954 -07 000000502 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:10:36.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:36.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.964 -07 000000502 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:10:36.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:36.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.974 -07 000000502 INF: FPGA: Recv ZSGSRD 36982
17-03-18 06:10:36.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:36.984 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.984 -07 000000502 INF: FPGA: Recv ZSGSRD 36988
17-03-18 06:10:36.994 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:36.994 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:36.994 -07 000000569 INF: FPGA: Recv ZSGSRD 36993
17-03-18 06:10:37.004 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:37.004 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:37.004 -07 000000438 INF: FPGA: Recv ZSGSRD 36989
17-03-18 06:10:37.014 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:37.014 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:37.014 -07 000000438 INF: FPGA: Recv ZSGSRD 36985
17-03-18 06:10:37.024 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:37.024 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:37.024 -07 000000502 INF: FPGA: Recv ZPIEZORD 33200
17-03-18 06:10:37.034 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V.
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36986 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36985 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36993 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36986, posNoise = 7, negNoise = 4
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: After move to -0.177931, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:10:37.034 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:37.084 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 06:10:37.084 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:37.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:37.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:37.084 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:37.084 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:37.084 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:37.084 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:37.084 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:37.084 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:37.084 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:37.084 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:37.104 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:10:37.104 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:10:37.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:37.154 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 06:10:37.454 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 06:10:37.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 06:10:37.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:37.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 609420352, 0x0, 559484976) start.
17-03-18 06:10:37.494 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:37.494 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:37.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 06:10:37.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 609420352, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:10:37.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:37.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:10:37.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:10:37.594 -07 000000502 INF: Autofocus start
17-03-18 06:10:37.594 -07 000000502 INF: MeasureProfile start
17-03-18 06:10:37.594 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:37.594 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:37.604 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:37.604 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:37.604 -07 000000502 INF: MeasureProfile done
17-03-18 06:10:37.604 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:10:37.604 -07 000000502 INF: Autofocus finished
17-03-18 06:10:37.804 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:37.804 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:10:37.804 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177929262286306. ----------
17-03-18 06:10:37.814 -07 000000610 INF: Cycle	146	Tile	2	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:37.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37349, sync = True, waitForSettling = True)
17-03-18 06:10:37.814 -07 000000610 INF: Z Motor: Moving to -0.170973 mm, started at -0.177929 mm, distance = 6.96 um
17-03-18 06:10:37.814 -07 000000610 INF: FPGA: Xmit ZDACW 37349\n [Z Motor]
17-03-18 06:10:37.814 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:10:37.824 -07 000000610 INF: FPGA: 'ZDACW 37349' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:37.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:37.824 -07 000000502 INF: FPGA: Recv ZDACR 37349
17-03-18 06:10:37.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:37.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:37.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:37.984 -07 000000437 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:10:37.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:37.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:37.994 -07 000000437 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:10:38.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.004 -07 000000438 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:10:38.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.014 -07 000000480 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:10:38.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.024 -07 000000480 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:10:38.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.034 -07 000000480 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:10:38.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35903
17-03-18 06:10:38.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35900
17-03-18 06:10:38.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.064 -07 000000437 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:10:38.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:38.074 -07 000000438 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:10:38.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:38.084 -07 000000438 INF: FPGA: Recv ZPIEZORD 31730
17-03-18 06:10:38.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:38.094 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 06:10:38.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35904 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35904 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35900 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:10:38.094 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35904, posNoise = 6, negNoise = 4
17-03-18 06:10:38.094 -07 000000610 INF: Z Motor: After move to -0.170973, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:38.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:10:38.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:38.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:38.094 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:38.094 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:38.094 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:38.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:38.094 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:38.094 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:38.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:38.094 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:38.094 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:38.094 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:38.104 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:10:38.104 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:38.104 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:10:38.104 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:38.114 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:10:38.114 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:10:38.114 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 06:10:38.114 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:38.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37526 150\n [Camera]
17-03-18 06:10:38.324 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:38.774 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:38.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:38.774 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:38.774 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:38.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:38.774 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:38.774 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:38.774 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:10:38.774 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:38.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:10:38.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37526 839
17-03-18 06:10:39.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:39.174 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:10:39.174 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:10:39.174 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:39.184 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:39.184 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:10:39.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:10:39.184 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:10:39.184 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:39.184 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:39.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:10:39.334 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:10:39.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:10:39.334 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:39.334 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:39.334 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:10:39.334 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:10:39.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:10:39.334 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:39.334 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:39.334 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:10:39.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:10:39.524 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:39.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37526 150' command took 2 ms to send, 1397 ms to get response, and 1407 ms overall
17-03-18 06:10:39.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:39.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.17097826474892. ------
17-03-18 06:10:39.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:39.534 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17774 mm
17-03-18 06:10:39.534 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:39.534 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:10:39.534 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:10:39.534 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:39.534 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38827, sync = True, waitForSettling = False)
17-03-18 06:10:39.534 -07 000000438 INF: Z Motor: Moving to -0.177739 mm, started at -0.170978 mm, distance = -6.76 um
17-03-18 06:10:39.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:39.544 -07 000000438 INF: FPGA: Xmit ZDACW 38827\n [Z Motor]
17-03-18 06:10:39.544 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:10:39.554 -07 000000438 INF: FPGA: 'ZDACW 38827' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:10:39.554 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:39.554 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:10:39.564 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:39.564 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:10:39.564 -07 000000502 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:39.564 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:39.564 -07 000000502 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:10:39.574 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:39.574 -07 000000480 INF: FPGA: Recv ZDACR 38827
17-03-18 06:10:39.584 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:39.584 -07 000000438 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:10:39.584 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:39.734 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:10:39.734 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:10:39.734 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:39.734 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:10:39.734 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:10:39.734 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:39.734 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:39.744 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:10:39.744 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:10:39.744 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:10:39.764 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:39.764 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:10:39.964 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:10:39.964 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:10:40.014 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:40.014 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:10:40.024 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:40.024 -07 000000502 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:40.024 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:10:40.024 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.841 mm, average velocity = 2.102 mm/sec
17-03-18 06:10:40.974 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:40.974 -07 000000447 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:10:40.984 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:40.984 -07 000000502 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:41.014 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:41.014 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:10:41.014 -07 000000502 INF: Y Motor: Moved to 61.5625 after 1476 ms (table move)
17-03-18 06:10:41.014 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177739 mm (DAC = 38827)
17-03-18 06:10:41.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36962
17-03-18 06:10:41.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:10:41.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36961
17-03-18 06:10:41.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.034 -07 000000424 INF: FPGA: Recv ZSGSRD 36953
17-03-18 06:10:41.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.044 -07 000000424 INF: FPGA: Recv ZSGSRD 36955
17-03-18 06:10:41.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.054 -07 000000424 INF: FPGA: Recv ZSGSRD 36952
17-03-18 06:10:41.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.064 -07 000000424 INF: FPGA: Recv ZSGSRD 36966
17-03-18 06:10:41.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.074 -07 000000424 INF: FPGA: Recv ZSGSRD 36965
17-03-18 06:10:41.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36956
17-03-18 06:10:41.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.094 -07 000000424 INF: FPGA: Recv ZSGSRD 36955
17-03-18 06:10:41.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:41.104 -07 000000424 INF: FPGA: Recv ZSGSRD 36957
17-03-18 06:10:41.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.114 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:41.114 -07 000000424 INF: FPGA: Recv ZPIEZORD 33166
17-03-18 06:10:41.124 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.925 V. Piezo Error = -8.4 V.
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36958 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36956 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36952 (-176.8 uncal um), Max = 36966 (-176.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36958, posNoise = 8, negNoise = 6
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: After move to -0.177739, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: Settle wait time = 1479 ms, measure time = 103 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:10:41.124 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:41.174 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:10:41.174 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:41.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:41.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:41.174 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:41.174 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:41.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:41.174 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:41.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:10:41.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:41.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:41.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:41.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:10:41.184 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:10:41.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:41.234 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:41.534 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:41.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:41.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:41.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:10:41.574 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:41.574 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:41.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:10:41.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:10:41.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:41.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:10:41.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:10:41.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:41.674 -07 000000569 INF: Autofocus start
17-03-18 06:10:41.674 -07 000000569 INF: MeasureProfile start
17-03-18 06:10:41.674 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:41.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:10:41.684 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:41.684 -07 000000569 INF: MeasureProfile done
17-03-18 06:10:41.684 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:10:41.684 -07 000000569 INF: Autofocus finished
17-03-18 06:10:41.834 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:41.884 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:41.884 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:10:41.884 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177749384346336. ----------
17-03-18 06:10:41.884 -07 000000610 INF: Cycle	146	Tile	3	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:41.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37360, sync = True, waitForSettling = True)
17-03-18 06:10:41.894 -07 000000610 INF: Z Motor: Moving to -0.171023 mm, started at -0.177749 mm, distance = 6.73 um
17-03-18 06:10:41.894 -07 000000610 INF: FPGA: Xmit ZDACW 37360\n [Z Motor]
17-03-18 06:10:41.894 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:10:41.904 -07 000000610 INF: FPGA: 'ZDACW 37360' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:41.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:41.904 -07 000000569 INF: FPGA: Recv ZDACR 37360
17-03-18 06:10:41.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:41.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:42.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:10:42.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.074 -07 000000512 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:10:42.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:10:42.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:10:42.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.114 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.001704,
17-03-18 06:10:42.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:10:42.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:10:42.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.144 -07 000000501 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:10:42.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:42.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.164 -07 000000569 INF: FPGA: Recv ZSGSRD 35917
17-03-18 06:10:42.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:10:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:10:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:10:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.194 -07 000000512 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:10:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:42.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35917
17-03-18 06:10:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:42.214 -07 000000569 INF: FPGA: Recv ZPIEZORD 31739
17-03-18 06:10:42.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:42.224 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 06:10:42.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35914 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35905 (-170.1 uncal um), Max = 35918 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:10:42.224 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35914, posNoise = 4, negNoise = 9
17-03-18 06:10:42.224 -07 000000610 INF: Z Motor: After move to -0.171023, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:42.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 06:10:42.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:42.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:42.224 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:42.224 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:42.224 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:42.224 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:42.224 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:10:42.224 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:42.224 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:42.224 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:42.234 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:42.234 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:42.234 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:10:42.234 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:42.234 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:10:42.234 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:42.244 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:10:42.244 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:10:42.244 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:10:42.244 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:10:42.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37537 150\n [Camera]
17-03-18 06:10:42.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:42.904 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:42.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:42.904 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:42.904 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:42.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:42.904 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:42.904 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:42.904 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:10:42.914 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:42.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:10:43.094 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37537 839
17-03-18 06:10:43.244 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:43.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:10:43.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:10:43.304 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:43.304 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:43.304 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:10:43.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:10:43.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:10:43.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:43.314 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:43.314 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:10:43.464 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:10:43.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:10:43.464 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:43.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:10:43.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:10:43.464 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:43.464 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:43.464 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:10:43.474 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:43.474 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:10:43.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:10:43.654 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:43.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37537 150' command took 2 ms to send, 1406 ms to get response, and 1410 ms overall
17-03-18 06:10:43.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:43.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171042506870338. ------
17-03-18 06:10:43.664 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:43.664 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17732 mm
17-03-18 06:10:43.664 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:43.664 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:43.664 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:10:43.664 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:10:43.664 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38737, sync = True, waitForSettling = False)
17-03-18 06:10:43.664 -07 000000512 INF: Z Motor: Moving to -0.177327 mm, started at -0.171043 mm, distance = -6.28 um
17-03-18 06:10:43.674 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:43.674 -07 000000512 INF: FPGA: Xmit ZDACW 38737\n [Z Motor]
17-03-18 06:10:43.674 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:10:43.684 -07 000000512 INF: FPGA: 'ZDACW 38737' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:10:43.684 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:43.684 -07 000000479 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:10:43.694 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:10:43.694 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:43.694 -07 000000462 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:43.694 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:43.694 -07 000000462 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:10:43.704 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:43.704 -07 000000424 INF: FPGA: Recv ZDACR 38737
17-03-18 06:10:43.714 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:43.714 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:43.714 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:10:43.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:10:43.864 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:10:43.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:43.864 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:10:43.864 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:10:43.864 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:43.864 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:43.864 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:10:43.864 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:43.874 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:10:43.894 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:43.894 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:10:44.084 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:10:44.084 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:10:44.134 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:44.144 -07 000000502 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:10:44.144 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:10:44.144 -07 000000462 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:44.144 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:10:44.144 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:10:45.094 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:45.094 -07 000000569 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:10:45.104 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:45.104 -07 000000462 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:45.134 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:45.134 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:10:45.134 -07 000000462 INF: Y Motor: Moved to 62.3940 after 1465 ms (table move)
17-03-18 06:10:45.134 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177327 mm (DAC = 38737)
17-03-18 06:10:45.134 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36901
17-03-18 06:10:45.144 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:10:45.144 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36899
17-03-18 06:10:45.154 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.154 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.154 -07 000000438 INF: FPGA: Recv ZSGSRD 36893
17-03-18 06:10:45.164 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.164 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.164 -07 000000438 INF: FPGA: Recv ZSGSRD 36887
17-03-18 06:10:45.174 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.174 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.174 -07 000000438 INF: FPGA: Recv ZSGSRD 36890
17-03-18 06:10:45.184 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.184 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.184 -07 000000438 INF: FPGA: Recv ZSGSRD 36892
17-03-18 06:10:45.194 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.194 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.194 -07 000000479 INF: FPGA: Recv ZSGSRD 36898
17-03-18 06:10:45.204 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.204 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.204 -07 000000479 INF: FPGA: Recv ZSGSRD 36900
17-03-18 06:10:45.214 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.214 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.214 -07 000000479 INF: FPGA: Recv ZSGSRD 36897
17-03-18 06:10:45.224 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.224 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:45.224 -07 000000479 INF: FPGA: Recv ZSGSRD 36894
17-03-18 06:10:45.234 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.234 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:45.234 -07 000000479 INF: FPGA: Recv ZPIEZORD 33091
17-03-18 06:10:45.244 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.4 V.
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36895 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36896 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36901 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36895, posNoise = 6, negNoise = 8
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: After move to -0.177327, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: Settle wait time = 1468 ms, measure time = 103 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:10:45.244 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:45.294 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:10:45.294 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:45.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:45.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:45.294 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:45.294 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:45.294 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:45.294 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:45.294 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:10:45.294 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:45.304 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:10:45.304 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:45.314 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:10:45.314 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:10:45.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:45.354 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:45.654 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:45.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:45.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:45.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:10:45.694 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:45.694 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:45.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:10:45.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:10:45.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:45.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:10:45.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:10:45.794 -07 000000501 INF: Autofocus start
17-03-18 06:10:45.794 -07 000000501 INF: MeasureProfile start
17-03-18 06:10:45.794 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:45.804 -07 000000501 INF: MeasureProfile done
17-03-18 06:10:45.804 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:10:45.804 -07 000000501 INF: Autofocus finished
17-03-18 06:10:45.814 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:45.814 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 16 ms overall
17-03-18 06:10:45.814 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:46.014 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:46.014 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:10:46.014 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.177344658981405. ----------
17-03-18 06:10:46.024 -07 000000610 INF: Cycle	146	Tile	4	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:46.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37251, sync = True, waitForSettling = True)
17-03-18 06:10:46.024 -07 000000610 INF: Z Motor: Moving to -0.170524 mm, started at -0.177345 mm, distance = 6.82 um
17-03-18 06:10:46.024 -07 000000610 INF: FPGA: Xmit ZDACW 37251\n [Z Motor]
17-03-18 06:10:46.024 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:10:46.034 -07 000000610 INF: FPGA: 'ZDACW 37251' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:10:46.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:46.034 -07 000000501 INF: FPGA: Recv ZDACR 37251
17-03-18 06:10:46.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:10:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35843
17-03-18 06:10:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35825
17-03-18 06:10:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35836
17-03-18 06:10:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.234 -07 000000569 INF: FPGA: Recv ZSGSRD 35833
17-03-18 06:10:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.244 -07 000000569 INF: FPGA: Recv ZSGSRD 35835
17-03-18 06:10:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.254 -07 000000569 INF: FPGA: Recv ZSGSRD 35826
17-03-18 06:10:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:10:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.274 -07 000000569 INF: FPGA: Recv ZSGSRD 35835
17-03-18 06:10:46.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:46.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:10:46.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:46.294 -07 000000569 INF: FPGA: Recv ZPIEZORD 31656
17-03-18 06:10:46.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:46.304 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-18 06:10:46.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35834 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35834 (-169.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35825 (-169.6 uncal um), Max = 35843 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:10:46.304 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35834, posNoise = 9, negNoise = 9
17-03-18 06:10:46.304 -07 000000610 INF: Z Motor: After move to -0.170524, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:46.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:10:46.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:46.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:46.304 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:46.304 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:46.304 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:46.304 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:46.304 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:46.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:46.304 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:46.304 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:46.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:46.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:46.304 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:46.314 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:46.334 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:10:46.334 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:46.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 33 ms.
17-03-18 06:10:46.344 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 06:10:46.344 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:10:46.344 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 06:10:46.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37428 150\n [Camera]
17-03-18 06:10:46.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:46.834 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:47.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:47.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:47.004 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:47.004 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:47.004 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:10:47.004 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:47.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:47.004 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:47.004 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:47.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:10:47.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37428 839
17-03-18 06:10:47.344 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:47.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:10:47.404 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:10:47.404 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:47.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:10:47.404 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:10:47.404 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:47.414 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:47.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:10:47.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:47.414 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:10:47.504 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.996267,
17-03-18 06:10:47.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:10:47.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:10:47.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:47.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:47.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:10:47.564 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:10:47.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:10:47.574 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:47.574 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:47.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:10:47.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:10:47.754 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:47.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37428 150' command took 2 ms to send, 1398 ms to get response, and 1408 ms overall
17-03-18 06:10:47.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:47.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.170528569898997. ------
17-03-18 06:10:47.764 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:47.764 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17698 mm
17-03-18 06:10:47.764 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:47.764 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:10:47.764 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:10:47.764 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38661, sync = True, waitForSettling = False)
17-03-18 06:10:47.764 -07 000000502 INF: Z Motor: Moving to -0.176979 mm, started at -0.170529 mm, distance = -6.45 um
17-03-18 06:10:47.764 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:47.774 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:47.774 -07 000000502 INF: FPGA: Xmit ZDACW 38661\n [Z Motor]
17-03-18 06:10:47.774 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:10:47.784 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:47.784 -07 000000502 INF: FPGA: 'ZDACW 38661' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:10:47.784 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:10:47.794 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:47.794 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:10:47.794 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:47.914 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:47.914 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:47.914 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:10:47.914 -07 000000480 INF: FPGA: Recv ZDACR 38661
17-03-18 06:10:47.924 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 06:10:47.924 -07 000000502 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-18 06:10:47.924 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:47.974 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:10:47.974 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:10:47.974 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:47.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:10:47.974 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:10:47.974 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:47.974 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:47.974 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:10:47.974 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:10:47.984 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:10:47.994 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:47.994 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 77 ms to get response, and 222 ms overall
17-03-18 06:10:48.294 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:10:48.294 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 06:10:48.354 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:48.354 -07 000000447 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:10:48.364 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:48.364 -07 000000462 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:48.364 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:10:48.364 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.195 mm/sec
17-03-18 06:10:49.314 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:49.314 -07 000000480 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:10:49.324 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.324 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:49.354 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:49.354 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:10:49.354 -07 000000462 INF: Y Motor: Moved to 63.2227 after 1586 ms (table move)
17-03-18 06:10:49.354 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176979 mm (DAC = 38661)
17-03-18 06:10:49.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36839
17-03-18 06:10:49.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:10:49.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36840
17-03-18 06:10:49.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36838
17-03-18 06:10:49.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.384 -07 000000462 INF: FPGA: Recv ZSGSRD 36842
17-03-18 06:10:49.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.394 -07 000000462 INF: FPGA: Recv ZSGSRD 36838
17-03-18 06:10:49.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.404 -07 000000462 INF: FPGA: Recv ZSGSRD 36837
17-03-18 06:10:49.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36837
17-03-18 06:10:49.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.424 -07 000000501 INF: FPGA: Recv ZSGSRD 36842
17-03-18 06:10:49.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.434 -07 000000501 INF: FPGA: Recv ZSGSRD 36843
17-03-18 06:10:49.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:49.444 -07 000000501 INF: FPGA: Recv ZSGSRD 36838
17-03-18 06:10:49.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.454 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:49.454 -07 000000501 INF: FPGA: Recv ZPIEZORD 32996
17-03-18 06:10:49.464 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V.
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36839 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36837 (-176.1 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36839, posNoise = 4, negNoise = 2
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: After move to -0.176979, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: Settle wait time = 1590 ms, measure time = 103 ms (allowed 150 ms), total time = 1693 ms
17-03-18 06:10:49.464 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:49.514 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1746 ms
17-03-18 06:10:49.514 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:49.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:49.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:49.514 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:49.514 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:49.524 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:49.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:49.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:49.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:49.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:49.524 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:49.534 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:10:49.534 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:10:49.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:49.574 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:49.874 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:49.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:49.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:49.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:10:49.914 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:49.914 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:49.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:10:49.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:10:49.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:49.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:10:49.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:10:50.014 -07 000000512 INF: Autofocus start
17-03-18 06:10:50.014 -07 000000512 INF: MeasureProfile start
17-03-18 06:10:50.014 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:50.024 -07 000000512 INF: MeasureProfile done
17-03-18 06:10:50.024 -07 000000512 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:10:50.024 -07 000000512 INF: Autofocus finished
17-03-18 06:10:50.814 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:50.814 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 790 ms to get response, and 797 ms overall
17-03-18 06:10:50.814 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:51.014 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:51.014 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 06:10:51.024 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176984903101467. ----------
17-03-18 06:10:51.024 -07 000000610 INF: Cycle	146	Tile	5	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:51.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37212, sync = True, waitForSettling = True)
17-03-18 06:10:51.024 -07 000000610 INF: Z Motor: Moving to -0.170346 mm, started at -0.176985 mm, distance = 6.64 um
17-03-18 06:10:51.024 -07 000000610 INF: FPGA: Xmit ZDACW 37212\n [Z Motor]
17-03-18 06:10:51.024 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:10:51.034 -07 000000610 INF: FPGA: 'ZDACW 37212' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:10:51.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:51.034 -07 000000437 INF: FPGA: Recv ZDACR 37212
17-03-18 06:10:51.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:51.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.194 -07 000000437 INF: FPGA: Recv ZSGSRD 35810
17-03-18 06:10:51.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:51.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35806
17-03-18 06:10:51.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35806
17-03-18 06:10:51.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35808
17-03-18 06:10:51.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35810
17-03-18 06:10:51.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35809
17-03-18 06:10:51.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.254 -07 000000447 INF: FPGA: Recv ZSGSRD 35809
17-03-18 06:10:51.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35804
17-03-18 06:10:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.274 -07 000000479 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:10:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:51.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:10:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:51.294 -07 000000437 INF: FPGA: Recv ZPIEZORD 31602
17-03-18 06:10:51.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:51.304 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.3 V.
17-03-18 06:10:51.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35803 (-169.5 uncal um), Max = 35812 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:10:51.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 4, negNoise = 5
17-03-18 06:10:51.304 -07 000000610 INF: Z Motor: After move to -0.170346, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:51.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:10:51.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:51.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:51.304 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:51.304 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:51.304 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:51.304 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:51.304 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:51.304 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:51.304 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:51.304 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:51.304 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:51.304 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:51.314 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:10:51.314 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:51.314 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:10:51.314 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:51.324 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 06:10:51.324 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:51.324 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:10:51.324 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:51.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37388 150\n [Camera]
17-03-18 06:10:51.534 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:51.834 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:51.984 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:51.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:51.984 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:51.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:51.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:51.984 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:51.994 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:51.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:10:51.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:51.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:10:52.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37388 839
17-03-18 06:10:52.324 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:52.384 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:10:52.384 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:10:52.384 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:52.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:10:52.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:10:52.394 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:52.394 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:52.394 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:10:52.394 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:52.404 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:10:52.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:10:52.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:10:52.554 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:52.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:10:52.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:10:52.554 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:52.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:52.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:10:52.564 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:52.564 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:10:52.734 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:10:52.734 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:52.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37388 150' command took 2 ms to send, 1397 ms to get response, and 1406 ms overall
17-03-18 06:10:52.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:52.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170361540383311. ------
17-03-18 06:10:52.864 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17659 mm
17-03-18 06:10:52.864 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:52.874 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:52.874 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:10:52.874 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:10:52.874 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38576, sync = True, waitForSettling = False)
17-03-18 06:10:52.874 -07 000000438 INF: Z Motor: Moving to -0.176590 mm, started at -0.170362 mm, distance = -6.23 um
17-03-18 06:10:52.874 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.969015,
17-03-18 06:10:52.874 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:52.884 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:10:52.884 -07 000000438 INF: FPGA: Xmit ZDACW 38576\n [Z Motor]
17-03-18 06:10:52.884 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:10:52.894 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:52.894 -07 000000438 INF: FPGA: 'ZDACW 38576' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:10:52.894 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:10:52.904 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:10:52.904 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:52.904 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:52.904 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:10:52.914 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:52.924 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:52.924 -07 000000502 INF: FPGA: Recv ZDACR 38576
17-03-18 06:10:52.934 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:52.934 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:10:52.934 -07 000000438 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 06:10:52.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:10:52.954 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:10:52.954 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:52.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:10:52.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:10:52.964 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:52.964 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:52.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:10:52.964 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:52.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:10:53.114 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:53.114 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 235 ms overall
17-03-18 06:10:53.304 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:10:53.304 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 06:10:53.364 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:53.364 -07 000000438 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:10:53.374 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:53.374 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:53.374 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:10:53.374 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.840 mm, average velocity = 2.059 mm/sec
17-03-18 06:10:54.324 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:54.814 -07 000000512 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:10:54.814 -07 000000479 INF: FPGA: 'YRDPOS' command took 20 ms to send, 460 ms to get response, and 490 ms overall
17-03-18 06:10:54.814 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:54.844 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:54.844 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:10:54.844 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1971 ms (table move)
17-03-18 06:10:54.844 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176590 mm (DAC = 38576)
17-03-18 06:10:54.844 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.844 -07 000000480 INF: FPGA: Recv ZSGSRD 36783
17-03-18 06:10:54.854 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:10:54.854 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.854 -07 000000480 INF: FPGA: Recv ZSGSRD 36776
17-03-18 06:10:54.864 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.864 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.864 -07 000000569 INF: FPGA: Recv ZSGSRD 36777
17-03-18 06:10:54.874 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.874 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.874 -07 000000480 INF: FPGA: Recv ZSGSRD 36777
17-03-18 06:10:54.884 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.884 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.884 -07 000000502 INF: FPGA: Recv ZSGSRD 36781
17-03-18 06:10:54.894 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.894 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.894 -07 000000569 INF: FPGA: Recv ZSGSRD 36778
17-03-18 06:10:54.904 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.904 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.904 -07 000000569 INF: FPGA: Recv ZSGSRD 36776
17-03-18 06:10:54.914 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.914 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.914 -07 000000502 INF: FPGA: Recv ZSGSRD 36784
17-03-18 06:10:54.924 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.924 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.924 -07 000000569 INF: FPGA: Recv ZSGSRD 36781
17-03-18 06:10:54.934 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.934 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:54.934 -07 000000569 INF: FPGA: Recv ZSGSRD 36773
17-03-18 06:10:54.944 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.944 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:54.944 -07 000000569 INF: FPGA: Recv ZPIEZORD 32955
17-03-18 06:10:54.954 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.5 V.
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36779 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36778 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36773 (-175.7 uncal um), Max = 36784 (-175.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36779, posNoise = 5, negNoise = 6
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: After move to -0.176590, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: Settle wait time = 1974 ms, measure time = 105 ms (allowed 150 ms), total time = 2079 ms
17-03-18 06:10:54.954 -07 000000437 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:55.004 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2131 ms
17-03-18 06:10:55.004 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:55.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:55.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:55.004 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:55.014 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:55.014 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:55.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:55.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:10:55.014 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:55.014 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:55.014 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:55.024 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:10:55.024 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:10:55.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:55.074 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:55.374 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:55.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:55.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:55.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:10:55.414 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:55.414 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:55.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 06:10:55.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:10:55.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:55.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:10:55.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:10:55.514 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:55.514 -07 000000480 INF: Autofocus start
17-03-18 06:10:55.514 -07 000000480 INF: MeasureProfile start
17-03-18 06:10:55.514 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:55.524 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:55.524 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:55.524 -07 000000480 INF: MeasureProfile done
17-03-18 06:10:55.524 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:10:55.524 -07 000000480 INF: Autofocus finished
17-03-18 06:10:55.724 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:55.724 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:10:55.724 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176599450372961. ----------
17-03-18 06:10:55.724 -07 000000610 INF: Cycle	146	Tile	6	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:55.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37091, sync = True, waitForSettling = True)
17-03-18 06:10:55.734 -07 000000610 INF: Z Motor: Moving to -0.169792 mm, started at -0.176599 mm, distance = 6.81 um
17-03-18 06:10:55.734 -07 000000610 INF: FPGA: Xmit ZDACW 37091\n [Z Motor]
17-03-18 06:10:55.734 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:10:55.744 -07 000000610 INF: FPGA: 'ZDACW 37091' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:10:55.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:55.744 -07 000000467 INF: FPGA: Recv ZDACR 37091
17-03-18 06:10:55.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:55.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.904 -07 000000501 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:10:55.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.914 -07 000000480 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:10:55.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.924 -07 000000480 INF: FPGA: Recv ZSGSRD 35716
17-03-18 06:10:55.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.934 -07 000000501 INF: FPGA: Recv ZSGSRD 35723
17-03-18 06:10:55.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.944 -07 000000501 INF: FPGA: Recv ZSGSRD 35715
17-03-18 06:10:55.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.954 -07 000000501 INF: FPGA: Recv ZSGSRD 35723
17-03-18 06:10:55.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.964 -07 000000501 INF: FPGA: Recv ZSGSRD 35719
17-03-18 06:10:55.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.974 -07 000000569 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:10:55.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.984 -07 000000447 INF: FPGA: Recv ZSGSRD 35726
17-03-18 06:10:55.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:55.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:55.994 -07 000000479 INF: FPGA: Recv ZSGSRD 35714
17-03-18 06:10:56.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:56.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:56.004 -07 000000479 INF: FPGA: Recv ZPIEZORD 31506
17-03-18 06:10:56.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:56.014 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.3 V.
17-03-18 06:10:56.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35720 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35714 (-168.9 uncal um), Max = 35726 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:10:56.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35720, posNoise = 6, negNoise = 6
17-03-18 06:10:56.014 -07 000000610 INF: Z Motor: After move to -0.169792, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:56.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:10:56.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:56.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:56.014 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:56.014 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:56.014 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:10:56.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:56.014 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:10:56.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:10:56.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:10:56.014 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:10:56.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:10:56.014 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:10:56.014 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:10:56.014 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:10:56.024 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:10:56.024 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:10:56.034 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:10:56.034 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:56.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:10:56.034 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:10:56.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37268 150\n [Camera]
17-03-18 06:10:56.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:10:56.694 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:10:56.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:10:56.694 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:56.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:10:56.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:10:56.694 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:56.694 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:56.694 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:10:56.704 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:56.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:10:56.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:10:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:10:56.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37268 839
17-03-18 06:10:57.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:10:57.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:10:57.094 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:10:57.094 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:57.094 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:57.094 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:10:57.094 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:10:57.094 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:10:57.094 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:57.104 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:10:57.104 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:10:57.254 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:10:57.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:10:57.254 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:10:57.254 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:10:57.254 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:10:57.254 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:10:57.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:10:57.264 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:10:57.264 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:10:57.264 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:10:57.444 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:10:57.444 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:10:57.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37268 150' command took 2 ms to send, 1398 ms to get response, and 1409 ms overall
17-03-18 06:10:57.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:10:57.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169796209714836. ------
17-03-18 06:10:57.454 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:57.454 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17619 mm
17-03-18 06:10:57.454 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:10:57.454 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:10:57.454 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:10:57.454 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38488, sync = True, waitForSettling = False)
17-03-18 06:10:57.454 -07 000000569 INF: Z Motor: Moving to -0.176187 mm, started at -0.169796 mm, distance = -6.39 um
17-03-18 06:10:57.464 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:57.464 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:57.464 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:10:57.464 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:10:57.474 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:10:57.474 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:57.474 -07 000000569 INF: FPGA: Xmit ZDACW 38488\n [Z Motor]
17-03-18 06:10:57.474 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:10:57.474 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:10:57.474 -07 000000502 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:10:57.484 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:10:57.484 -07 000000569 INF: FPGA: 'ZDACW 38488' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:10:57.494 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:10:57.504 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:57.504 -07 000000424 INF: FPGA: Recv ZDACR 38488
17-03-18 06:10:57.514 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:10:57.514 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:10:57.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:10:57.664 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:10:57.664 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:10:57.664 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:57.664 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:10:57.664 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:57.664 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:57.664 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:10:57.664 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:10:57.674 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:10:57.684 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:10:57.684 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:10:57.864 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:10:57.864 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:10:57.914 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:57.924 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:10:57.924 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:10:57.924 -07 000000502 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:57.924 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:10:57.924 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-18 06:10:58.294 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.951279,
17-03-18 06:10:58.874 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:10:58.874 -07 000000480 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:10:58.884 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:10:58.884 -07 000000502 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:10:58.914 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:10:58.914 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:10:58.914 -07 000000502 INF: Y Motor: Moved to 64.8774 after 1455 ms (table move)
17-03-18 06:10:58.914 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176187 mm (DAC = 38488)
17-03-18 06:10:58.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.924 -07 000000512 INF: FPGA: Recv ZSGSRD 36723
17-03-18 06:10:58.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:10:58.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.924 -07 000000462 INF: FPGA: Recv ZSGSRD 36713
17-03-18 06:10:58.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:58.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36715
17-03-18 06:10:58.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.944 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.944 -07 000000424 INF: FPGA: Recv ZSGSRD 36716
17-03-18 06:10:58.954 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.954 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36715
17-03-18 06:10:58.964 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.964 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.964 -07 000000462 INF: FPGA: Recv ZSGSRD 36720
17-03-18 06:10:58.974 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.974 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.974 -07 000000462 INF: FPGA: Recv ZSGSRD 36714
17-03-18 06:10:58.984 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.984 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.984 -07 000000462 INF: FPGA: Recv ZSGSRD 36711
17-03-18 06:10:58.994 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:58.994 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:58.994 -07 000000462 INF: FPGA: Recv ZSGSRD 36713
17-03-18 06:10:59.004 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.004 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:59.004 -07 000000462 INF: FPGA: Recv ZSGSRD 36719
17-03-18 06:10:59.014 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.014 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:10:59.014 -07 000000462 INF: FPGA: Recv ZPIEZORD 32872
17-03-18 06:10:59.024 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.5 V.
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36716 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36715 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36711 (-175.3 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36716, posNoise = 7, negNoise = 5
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: After move to -0.176187, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: Settle wait time = 1460 ms, measure time = 102 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:10:59.024 -07 000000467 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:10:59.074 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:10:59.074 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:10:59.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:10:59.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:10:59.074 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:10:59.074 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:10:59.074 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:10:59.074 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:10:59.074 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:10:59.074 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:10:59.084 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:10:59.084 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:10:59.084 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:10:59.084 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:10:59.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:10:59.134 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:10:59.434 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:10:59.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:10:59.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:10:59.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:10:59.474 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:10:59.474 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:10:59.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:10:59.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:10:59.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:10:59.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:10:59.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:10:59.574 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:10:59.574 -07 000000479 INF: Autofocus start
17-03-18 06:10:59.574 -07 000000479 INF: MeasureProfile start
17-03-18 06:10:59.574 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:10:59.584 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:10:59.584 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:10:59.584 -07 000000479 INF: MeasureProfile done
17-03-18 06:10:59.584 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:10:59.584 -07 000000479 INF: Autofocus finished
17-03-18 06:10:59.784 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:10:59.784 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:10:59.784 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.17619472500803. ----------
17-03-18 06:10:59.784 -07 000000610 INF: Cycle	146	Tile	7	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:10:59.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37021, sync = True, waitForSettling = True)
17-03-18 06:10:59.794 -07 000000610 INF: Z Motor: Moving to -0.169471 mm, started at -0.176195 mm, distance = 6.72 um
17-03-18 06:10:59.794 -07 000000610 INF: FPGA: Xmit ZDACW 37021\n [Z Motor]
17-03-18 06:10:59.794 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:10:59.804 -07 000000610 INF: FPGA: 'ZDACW 37021' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:10:59.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:10:59.804 -07 000000502 INF: FPGA: Recv ZDACR 37021
17-03-18 06:10:59.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:10:59.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:59.964 -07 000000467 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:10:59.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:59.974 -07 000000447 INF: FPGA: Recv ZSGSRD 35674
17-03-18 06:10:59.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:59.984 -07 000000424 INF: FPGA: Recv ZSGSRD 35666
17-03-18 06:10:59.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:10:59.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:10:59.994 -07 000000467 INF: FPGA: Recv ZSGSRD 35669
17-03-18 06:11:00.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35676
17-03-18 06:11:00.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.014 -07 000000467 INF: FPGA: Recv ZSGSRD 35674
17-03-18 06:11:00.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.024 -07 000000424 INF: FPGA: Recv ZSGSRD 35666
17-03-18 06:11:00.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35670
17-03-18 06:11:00.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.044 -07 000000479 INF: FPGA: Recv ZSGSRD 35670
17-03-18 06:11:00.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:00.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35672
17-03-18 06:11:00.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:00.064 -07 000000424 INF: FPGA: Recv ZPIEZORD 31449
17-03-18 06:11:00.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:00.074 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.3 V.
17-03-18 06:11:00.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35671 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35671 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35666 (-168.6 uncal um), Max = 35676 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:00.074 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35671, posNoise = 5, negNoise = 5
17-03-18 06:11:00.074 -07 000000610 INF: Z Motor: After move to -0.169471, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:00.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:00.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:00.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:00.074 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:00.074 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:00.074 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:00.074 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:00.074 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:00.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:00.074 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:11:00.074 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:00.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:00.074 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:00.084 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:11:00.084 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:00.084 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:00.084 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:00.094 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:11:00.094 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:11:00.094 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:11:00.094 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:11:00.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37198 150\n [Camera]
17-03-18 06:11:00.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:00.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:00.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:00.754 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:00.754 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:00.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) start.
17-03-18 06:11:00.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:00.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:00.764 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:00.764 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:00.764 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:11:00.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37198 839
17-03-18 06:11:01.094 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:01.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:11:01.154 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:11:01.154 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:01.164 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:01.164 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:11:01.164 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:11:01.164 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:11:01.164 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:01.164 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:01.174 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:11:01.314 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:01.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:01.314 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:01.314 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:01.314 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:11:01.324 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:01.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:01.324 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:01.324 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:01.324 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:11:01.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:11:01.504 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:01.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37198 150' command took 2 ms to send, 1397 ms to get response, and 1407 ms overall
17-03-18 06:11:01.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:01.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.16948142331989. ------
17-03-18 06:11:01.514 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:01.514 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17618 mm
17-03-18 06:11:01.514 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:01.634 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:01.634 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 06:11:01.634 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:01.634 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:11:01.634 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:11:01.634 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38487, sync = True, waitForSettling = False)
17-03-18 06:11:01.634 -07 000000479 INF: Z Motor: Moving to -0.176182 mm, started at -0.169481 mm, distance = -6.70 um
17-03-18 06:11:01.644 -07 000000479 INF: FPGA: Xmit ZDACW 38487\n [Z Motor]
17-03-18 06:11:01.644 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:11:01.654 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:01.654 -07 000000479 INF: FPGA: 'ZDACW 38487' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:11:01.654 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:11:01.664 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:11:01.664 -07 000000502 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:01.664 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:01.664 -07 000000501 INF: FPGA: Recv ZDACR 38487
17-03-18 06:11:01.664 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:01.664 -07 000000502 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:11:01.674 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:11:01.674 -07 000000479 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:11:01.674 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:01.714 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:11:01.714 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:11:01.714 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:01.714 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:11:01.714 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:11:01.714 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:01.724 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:01.724 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:11:01.724 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:11:01.724 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:11:01.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:01.834 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:01.834 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 06:11:02.044 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:11:02.044 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:11:02.094 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:02.104 -07 000000569 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:11:02.104 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:02.104 -07 000000502 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:02.104 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:11:02.104 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 06:11:03.054 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:03.054 -07 000000462 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:11:03.064 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:03.064 -07 000000502 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:03.094 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:03.094 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:03.094 -07 000000502 INF: Y Motor: Moved to 65.7129 after 1461 ms (table move)
17-03-18 06:11:03.104 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176182 mm (DAC = 38487)
17-03-18 06:11:03.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.104 -07 000000502 INF: FPGA: Recv ZSGSRD 36711
17-03-18 06:11:03.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:03.114 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36709
17-03-18 06:11:03.124 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.124 -07 000000480 INF: FPGA: Recv ZSGSRD 36710
17-03-18 06:11:03.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.134 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.134 -07 000000447 INF: FPGA: Recv ZSGSRD 36710
17-03-18 06:11:03.144 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.144 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.144 -07 000000569 INF: FPGA: Recv ZSGSRD 36719
17-03-18 06:11:03.154 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.154 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.154 -07 000000479 INF: FPGA: Recv ZSGSRD 36715
17-03-18 06:11:03.164 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.164 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.164 -07 000000437 INF: FPGA: Recv ZSGSRD 36716
17-03-18 06:11:03.174 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.174 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36724
17-03-18 06:11:03.184 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.184 -07 000000437 INF: FPGA: Recv ZSGSRD 36711
17-03-18 06:11:03.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:03.194 -07 000000479 INF: FPGA: Recv ZSGSRD 36713
17-03-18 06:11:03.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.204 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:03.204 -07 000000467 INF: FPGA: Recv ZPIEZORD 32824
17-03-18 06:11:03.214 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.6 V.
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36714 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36709 (-175.3 uncal um), Max = 36724 (-175.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36714, posNoise = 10, negNoise = 5
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: After move to -0.176182, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:11:03.214 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:03.264 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1746 ms
17-03-18 06:11:03.264 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:03.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:03.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:03.264 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:03.264 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:03.264 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:03.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:03.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:03.264 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:03.274 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:03.274 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:03.274 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:11:03.274 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:11:03.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:03.324 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:03.624 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:03.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:03.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:03.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:03.654 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.011254,
17-03-18 06:11:03.664 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:03.664 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:03.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:11:03.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:11:03.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:03.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:03.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:11:03.764 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:03.764 -07 000000462 INF: Autofocus start
17-03-18 06:11:03.764 -07 000000462 INF: MeasureProfile start
17-03-18 06:11:03.764 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:03.774 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:11:03.774 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:03.774 -07 000000462 INF: MeasureProfile done
17-03-18 06:11:03.774 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:11:03.774 -07 000000462 INF: Autofocus finished
17-03-18 06:11:03.974 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:03.974 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:03.974 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176181876583747. ----------
17-03-18 06:11:03.974 -07 000000610 INF: Cycle	146	Tile	8	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:03.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36984, sync = True, waitForSettling = True)
17-03-18 06:11:03.984 -07 000000610 INF: Z Motor: Moving to -0.169302 mm, started at -0.176182 mm, distance = 6.88 um
17-03-18 06:11:03.984 -07 000000610 INF: FPGA: Xmit ZDACW 36984\n [Z Motor]
17-03-18 06:11:03.984 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:11:03.994 -07 000000610 INF: FPGA: 'ZDACW 36984' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:03.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:03.994 -07 000000512 INF: FPGA: Recv ZDACR 36984
17-03-18 06:11:04.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:04.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35639
17-03-18 06:11:04.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:04.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:11:04.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.174 -07 000000480 INF: FPGA: Recv ZSGSRD 35644
17-03-18 06:11:04.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.184 -07 000000467 INF: FPGA: Recv ZSGSRD 35641
17-03-18 06:11:04.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.194 -07 000000480 INF: FPGA: Recv ZSGSRD 35643
17-03-18 06:11:04.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.204 -07 000000447 INF: FPGA: Recv ZSGSRD 35647
17-03-18 06:11:04.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.214 -07 000000480 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:11:04.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.224 -07 000000447 INF: FPGA: Recv ZSGSRD 35642
17-03-18 06:11:04.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.234 -07 000000447 INF: FPGA: Recv ZSGSRD 35641
17-03-18 06:11:04.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:04.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:11:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:04.254 -07 000000501 INF: FPGA: Recv ZPIEZORD 31413
17-03-18 06:11:04.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:04.264 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V.
17-03-18 06:11:04.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35644 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35644 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35639 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:04.264 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35644, posNoise = 4, negNoise = 5
17-03-18 06:11:04.264 -07 000000610 INF: Z Motor: After move to -0.169302, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:04.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:11:04.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:04.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:04.274 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:04.274 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:04.274 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:04.274 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:04.274 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:04.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:04.274 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:04.274 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:04.274 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:11:04.274 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:04.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:04.284 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:04.284 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:11:04.284 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:04.294 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:11:04.294 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:11:04.294 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:11:04.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:11:04.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37161 150\n [Camera]
17-03-18 06:11:04.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:04.954 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:04.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:04.954 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:04.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:04.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:04.954 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:04.954 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:04.954 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:04.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:04.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:05.144 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37161 839
17-03-18 06:11:05.294 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:05.344 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:11:05.344 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:11:05.344 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:05.344 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:05.344 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:11:05.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:11:05.344 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:11:05.344 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:05.354 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:05.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:11:05.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:05.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:05.514 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:05.514 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:05.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:05.524 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:05.524 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:05.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:05.524 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:05.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:11:05.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:11:05.704 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:05.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37161 150' command took 2 ms to send, 1396 ms to get response, and 1407 ms overall
17-03-18 06:11:05.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:05.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169307969592063. ------
17-03-18 06:11:05.714 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:05.714 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17574 mm
17-03-18 06:11:05.714 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:05.834 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:05.834 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 06:11:05.834 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:05.834 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:11:05.834 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38391, sync = True, waitForSettling = False)
17-03-18 06:11:05.834 -07 000000474 INF: Z Motor: Moving to -0.175743 mm, started at -0.169308 mm, distance = -6.43 um
17-03-18 06:11:05.834 -07 000000437 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:11:05.844 -07 000000474 INF: FPGA: Xmit ZDACW 38391\n [Z Motor]
17-03-18 06:11:05.844 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:11:05.854 -07 000000474 INF: FPGA: 'ZDACW 38391' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:05.854 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:05.854 -07 000000424 INF: FPGA: Recv ZDACR 38391
17-03-18 06:11:05.864 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:05.864 -07 000000474 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:11:05.864 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:05.864 -07 000000424 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:11:05.874 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:11:05.874 -07 000000437 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:05.874 -07 000000437 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:05.874 -07 000000437 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:11:05.874 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:05.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:11:05.924 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:11:05.924 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:05.924 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:11:05.924 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:11:05.924 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:05.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:05.934 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 06:11:05.934 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:05.944 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 06:11:06.034 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:06.034 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 06:11:06.244 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:11:06.244 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:11:06.294 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:06.304 -07 000000382 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:11:06.304 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:06.304 -07 000000437 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:06.304 -07 000000437 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:11:06.304 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-18 06:11:06.834 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:06.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:07.254 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:07.254 -07 000000512 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:11:07.264 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.264 -07 000000437 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:07.294 -07 000000437 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:07.294 -07 000000437 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:07.294 -07 000000437 INF: Y Motor: Moved to 66.5376 after 1454 ms (table move)
17-03-18 06:11:07.294 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175743 mm (DAC = 38391)
17-03-18 06:11:07.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36643
17-03-18 06:11:07.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:11:07.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.304 -07 000000585 INF: FPGA: Recv ZSGSRD 36649
17-03-18 06:11:07.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.314 -07 000000424 INF: FPGA: Recv ZSGSRD 36641
17-03-18 06:11:07.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.324 -07 000000629 INF: FPGA: Recv ZSGSRD 36653
17-03-18 06:11:07.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.334 -07 000000512 INF: FPGA: Recv ZSGSRD 36646
17-03-18 06:11:07.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.344 -07 000000437 INF: FPGA: Recv ZSGSRD 36642
17-03-18 06:11:07.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.354 -07 000000447 INF: FPGA: Recv ZSGSRD 36646
17-03-18 06:11:07.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.364 -07 000000474 INF: FPGA: Recv ZSGSRD 36647
17-03-18 06:11:07.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.374 -07 000000585 INF: FPGA: Recv ZSGSRD 36658
17-03-18 06:11:07.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:07.384 -07 000000461 INF: FPGA: Recv ZSGSRD 36652
17-03-18 06:11:07.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.394 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:07.394 -07 000000447 INF: FPGA: Recv ZPIEZORD 32789
17-03-18 06:11:07.404 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.5 V.
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36648 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36646 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36641 (-174.8 uncal um), Max = 36658 (-174.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36648, posNoise = 10, negNoise = 7
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: After move to -0.175743, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:11:07.404 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:07.454 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 06:11:07.454 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:07.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:07.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:07.454 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:07.454 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:07.454 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:07.454 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:07.454 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:11:07.454 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:07.464 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:07.464 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:07.464 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:07.464 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:11:07.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:07.524 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 06:11:07.824 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:07.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:07.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:07.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:07.854 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:07.854 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:07.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:11:07.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:11:07.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:07.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:07.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:11:08.054 -07 000000467 INF: Autofocus start
17-03-18 06:11:08.054 -07 000000467 INF: MeasureProfile start
17-03-18 06:11:08.054 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:08.054 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:08.064 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:08.064 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:08.064 -07 000000467 INF: MeasureProfile done
17-03-18 06:11:08.064 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:11:08.064 -07 000000467 INF: Autofocus finished
17-03-18 06:11:08.264 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:08.264 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:08.264 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.17575787858239. ----------
17-03-18 06:11:08.264 -07 000000610 INF: Cycle	146	Tile	9	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:08.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36906, sync = True, waitForSettling = True)
17-03-18 06:11:08.274 -07 000000610 INF: Z Motor: Moving to -0.168945 mm, started at -0.175758 mm, distance = 6.81 um
17-03-18 06:11:08.274 -07 000000610 INF: FPGA: Xmit ZDACW 36906\n [Z Motor]
17-03-18 06:11:08.274 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:11:08.284 -07 000000610 INF: FPGA: 'ZDACW 36906' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:08.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:08.284 -07 000000585 INF: FPGA: Recv ZDACR 36906
17-03-18 06:11:08.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:08.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:11:08.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.454 -07 000000467 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:11:08.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:11:08.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.474 -07 000000474 INF: FPGA: Recv ZSGSRD 35583
17-03-18 06:11:08.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35587
17-03-18 06:11:08.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.494 -07 000000512 INF: FPGA: Recv ZSGSRD 35599
17-03-18 06:11:08.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.504 -07 000000480 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:11:08.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:11:08.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.524 -07 000000629 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:11:08.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:08.534 -07 000000382 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:11:08.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:08.544 -07 000000424 INF: FPGA: Recv ZPIEZORD 31338
17-03-18 06:11:08.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:08.554 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.4 V.
17-03-18 06:11:08.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35591 (-168.1 uncal um), Error = 0.8 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35583 (-168.0 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:11:08.554 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35591, posNoise = 8, negNoise = 8
17-03-18 06:11:08.554 -07 000000610 INF: Z Motor: After move to -0.168945, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:08.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:11:08.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:08.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:08.554 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:08.554 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:08.554 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:08.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:08.554 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:08.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:08.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:11:08.554 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:08.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:08.554 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:08.564 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:08.564 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:08.564 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:08.564 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:08.574 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:11:08.574 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:11:08.574 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:11:08.574 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:11:08.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37083 150\n [Camera]
17-03-18 06:11:08.774 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:09.014 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.012614,
17-03-18 06:11:09.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:09.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:09.234 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:09.234 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:09.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:09.234 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:09.234 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:09.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:09.234 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:09.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:09.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37083 840
17-03-18 06:11:09.574 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:09.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:11:09.614 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:11:09.614 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:09.624 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:09.624 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:11:09.624 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:11:09.624 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:09.624 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:09.624 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:11:09.624 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:11:09.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:09.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:09.794 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:09.794 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:09.794 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:11:09.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:09.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:09.794 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:09.794 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:09.794 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:11:09.984 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:09.984 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:09.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37083 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-18 06:11:09.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:09.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168967486348549. ------
17-03-18 06:11:09.984 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:09.984 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17573 mm
17-03-18 06:11:09.984 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:09.984 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:11:09.984 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:11:09.984 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-18 06:11:09.984 -07 000000480 INF: Z Motor: Moving to -0.175724 mm, started at -0.168967 mm, distance = -6.76 um
17-03-18 06:11:09.984 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:09.994 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:09.994 -07 000000480 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-18 06:11:09.994 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:11:10.004 -07 000000480 INF: FPGA: 'ZDACW 38387' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:10.004 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:10.004 -07 000000629 INF: FPGA: Recv ZDACR 38387
17-03-18 06:11:10.014 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:10.014 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:10.014 -07 000000480 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:11:10.014 -07 000000424 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:11:10.024 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:11:10.024 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:10.024 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:10.024 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:10.024 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:11:10.034 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:10.194 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:11:10.194 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:11:10.194 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:10.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:11:10.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:11:10.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:10.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:10.204 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:11:10.204 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:11:10.204 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:11:10.224 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:10.224 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 230 ms overall
17-03-18 06:11:10.404 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:11:10.404 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:11:10.464 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:10.464 -07 000000437 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:11:10.474 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:10.474 -07 000000512 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:10.474 -07 000000512 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:11:10.474 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.206 mm/sec
17-03-18 06:11:11.424 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:11.424 -07 000000480 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:11:11.434 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:11.434 -07 000000512 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:11.464 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:11.464 -07 000000512 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:11.464 -07 000000512 INF: Y Motor: Moved to 67.3706 after 1474 ms (table move)
17-03-18 06:11:11.464 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-18 06:11:11.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.464 -07 000000424 INF: FPGA: Recv ZSGSRD 36647
17-03-18 06:11:11.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:11.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.474 -07 000000629 INF: FPGA: Recv ZSGSRD 36640
17-03-18 06:11:11.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.484 -07 000000437 INF: FPGA: Recv ZSGSRD 36641
17-03-18 06:11:11.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.494 -07 000000629 INF: FPGA: Recv ZSGSRD 36638
17-03-18 06:11:11.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.504 -07 000000437 INF: FPGA: Recv ZSGSRD 36642
17-03-18 06:11:11.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.514 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.514 -07 000000512 INF: FPGA: Recv ZSGSRD 36648
17-03-18 06:11:11.524 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.524 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.524 -07 000000629 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:11:11.534 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.534 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36649
17-03-18 06:11:11.544 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.544 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.544 -07 000000480 INF: FPGA: Recv ZSGSRD 36644
17-03-18 06:11:11.554 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.554 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:11.554 -07 000000424 INF: FPGA: Recv ZSGSRD 36652
17-03-18 06:11:11.564 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.564 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:11.564 -07 000000438 INF: FPGA: Recv ZPIEZORD 32752
17-03-18 06:11:11.574 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.6 V.
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36645 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36646 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36638 (-174.8 uncal um), Max = 36652 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36645, posNoise = 7, negNoise = 7
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: After move to -0.175724, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: Settle wait time = 1477 ms, measure time = 104 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:11:11.574 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:11.624 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:11:11.624 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:11.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:11.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:11.634 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:11.634 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:11.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:11.634 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:11.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:11.634 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:11.634 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:11.634 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:11.644 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:11.644 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:11:11.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:11.684 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:11.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:11.984 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:11.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:11.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:11.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) start.
17-03-18 06:11:12.024 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:12.024 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:12.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:11:12.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:11:12.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:12.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:11:12.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:11:12.124 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:12.124 -07 000000437 INF: Autofocus start
17-03-18 06:11:12.124 -07 000000437 INF: MeasureProfile start
17-03-18 06:11:12.124 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:12.134 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:12.134 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:12.134 -07 000000437 INF: MeasureProfile done
17-03-18 06:11:12.134 -07 000000437 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:11:12.134 -07 000000437 INF: Autofocus finished
17-03-18 06:11:12.334 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:12.334 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:12.334 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175738605945965. ----------
17-03-18 06:11:12.334 -07 000000610 INF: Cycle	146	Tile	10	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:12.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36884, sync = True, waitForSettling = True)
17-03-18 06:11:12.344 -07 000000610 INF: Z Motor: Moving to -0.168844 mm, started at -0.175739 mm, distance = 6.89 um
17-03-18 06:11:12.344 -07 000000610 INF: FPGA: Xmit ZDACW 36884\n [Z Motor]
17-03-18 06:11:12.344 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:11:12.354 -07 000000610 INF: FPGA: 'ZDACW 36884' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:12.354 -07 000000424 INF: FPGA: Recv ZDACR 36884
17-03-18 06:11:12.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.514 -07 000000438 INF: FPGA: Recv ZSGSRD 35573
17-03-18 06:11:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:12.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35573
17-03-18 06:11:12.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.534 -07 000000629 INF: FPGA: Recv ZSGSRD 35571
17-03-18 06:11:12.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.544 -07 000000382 INF: FPGA: Recv ZSGSRD 35575
17-03-18 06:11:12.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:11:12.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.564 -07 000000438 INF: FPGA: Recv ZSGSRD 35569
17-03-18 06:11:12.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.574 -07 000000424 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:11:12.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.584 -07 000000438 INF: FPGA: Recv ZSGSRD 35569
17-03-18 06:11:12.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.594 -07 000000438 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:11:12.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:12.604 -07 000000382 INF: FPGA: Recv ZSGSRD 35572
17-03-18 06:11:12.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:12.614 -07 000000438 INF: FPGA: Recv ZPIEZORD 31339
17-03-18 06:11:12.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:12.624 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-18 06:11:12.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35573 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35573 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:11:12.624 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35573, posNoise = 4, negNoise = 4
17-03-18 06:11:12.624 -07 000000610 INF: Z Motor: After move to -0.168844, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:12.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:11:12.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:12.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:12.624 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:12.624 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:12.624 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:12.624 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:12.624 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:12.624 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:12.624 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:11:12.624 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:12.624 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:12.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:12.624 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:12.624 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:12.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:12.624 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:12.644 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:11:12.644 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:11:12.644 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:11:12.644 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:11:12.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37061 150\n [Camera]
17-03-18 06:11:12.844 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:13.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:13.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:13.304 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:13.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:13.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:11:13.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:13.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:13.304 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:13.304 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:13.304 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:11:13.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37061 839
17-03-18 06:11:13.644 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:13.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:11:13.684 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:11:13.684 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:13.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:11:13.684 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:11:13.684 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:13.694 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:11:13.694 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:11:13.694 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:13.704 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:11:13.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:13.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:13.864 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:13.864 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:13.864 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:11:13.864 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:13.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:13.874 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:13.874 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:13.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:11:14.054 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:11:14.064 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:14.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37061 150' command took 2 ms to send, 1400 ms to get response, and 1412 ms overall
17-03-18 06:11:14.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:14.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168851850529997. ------
17-03-18 06:11:14.194 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:14.194 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17519 mm
17-03-18 06:11:14.194 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:14.194 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:11:14.194 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:11:14.194 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38271, sync = True, waitForSettling = False)
17-03-18 06:11:14.194 -07 000000382 INF: Z Motor: Moving to -0.175193 mm, started at -0.168852 mm, distance = -6.34 um
17-03-18 06:11:14.194 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:14.204 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:14.204 -07 000000382 INF: FPGA: Xmit ZDACW 38271\n [Z Motor]
17-03-18 06:11:14.204 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:11:14.214 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:14.214 -07 000000382 INF: FPGA: 'ZDACW 38271' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:11:14.214 -07 000000629 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:11:14.224 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:14.224 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:11:14.224 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:14.224 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:14.224 -07 000000461 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:11:14.234 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:14.244 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:14.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:11:14.274 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:11:14.274 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:14.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:11:14.274 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:11:14.274 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:14.274 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:14.274 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:11:14.274 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:11:14.284 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:11:14.294 -07 000000437 INF: FPGA: Recv ZDACR 38271
17-03-18 06:11:14.294 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 51 ms to get response, and 80 ms overall
17-03-18 06:11:14.294 -07 000000382 INF: Z Motor: MoveAbsStepped took 97 ms (did NOT wait for settling yet))
17-03-18 06:11:14.374 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.011254,
17-03-18 06:11:14.424 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:14.424 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:11:14.624 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:11:14.624 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-18 06:11:14.674 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:14.674 -07 000000382 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:11:14.684 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:14.684 -07 000000461 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:14.684 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:11:14.684 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.842 mm, average velocity = 2.132 mm/sec
17-03-18 06:11:15.634 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:15.634 -07 000000382 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:11:15.644 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:15.644 -07 000000461 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:15.674 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:15.674 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:15.674 -07 000000461 INF: Y Motor: Moved to 68.2036 after 1481 ms (table move)
17-03-18 06:11:15.674 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175193 mm (DAC = 38271)
17-03-18 06:11:15.674 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.684 -07 000000480 INF: FPGA: Recv ZSGSRD 36568
17-03-18 06:11:15.694 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:15.694 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.694 -07 000000626 INF: FPGA: Recv ZSGSRD 36560
17-03-18 06:11:15.704 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.704 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.704 -07 000000480 INF: FPGA: Recv ZSGSRD 36554
17-03-18 06:11:15.714 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.714 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.714 -07 000000480 INF: FPGA: Recv ZSGSRD 36556
17-03-18 06:11:15.724 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.724 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.724 -07 000000626 INF: FPGA: Recv ZSGSRD 36566
17-03-18 06:11:15.734 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.734 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.734 -07 000000480 INF: FPGA: Recv ZSGSRD 36568
17-03-18 06:11:15.744 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.744 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.744 -07 000000461 INF: FPGA: Recv ZSGSRD 36567
17-03-18 06:11:15.754 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.754 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.754 -07 000000461 INF: FPGA: Recv ZSGSRD 36561
17-03-18 06:11:15.764 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.764 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.764 -07 000000382 INF: FPGA: Recv ZSGSRD 36564
17-03-18 06:11:15.774 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.774 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:15.774 -07 000000626 INF: FPGA: Recv ZSGSRD 36562
17-03-18 06:11:15.784 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.784 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:15.784 -07 000000382 INF: FPGA: Recv ZPIEZORD 32656
17-03-18 06:11:15.794 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.6 V.
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36563 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36563 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36554 (-174.3 uncal um), Max = 36568 (-174.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36563, posNoise = 5, negNoise = 9
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: After move to -0.175193, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: Settle wait time = 1485 ms, measure time = 111 ms (allowed 150 ms), total time = 1596 ms
17-03-18 06:11:15.794 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:15.834 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 06:11:15.834 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:15.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:15.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:15.834 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:15.834 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:15.834 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:15.844 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:15.844 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:15.844 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:15.844 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:15.844 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:15.854 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:15.854 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:11:15.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:15.894 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:16.194 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:16.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:16.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:16.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:16.234 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:16.234 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:16.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:11:16.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:11:16.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:16.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:16.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:11:16.334 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:16.334 -07 000000382 INF: Autofocus start
17-03-18 06:11:16.334 -07 000000382 INF: MeasureProfile start
17-03-18 06:11:16.334 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:16.344 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:11:16.344 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:16.344 -07 000000382 INF: MeasureProfile done
17-03-18 06:11:16.344 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:11:16.344 -07 000000382 INF: Autofocus finished
17-03-18 06:11:16.544 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:16.544 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:16.544 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.175211820550341. ----------
17-03-18 06:11:16.544 -07 000000610 INF: Cycle	146	Tile	11	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:16.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-18 06:11:16.554 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175212 mm, distance = 6.73 um
17-03-18 06:11:16.554 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-18 06:11:16.554 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:11:16.564 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:16.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:16.564 -07 000000382 INF: FPGA: Recv ZDACR 36804
17-03-18 06:11:16.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:16.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.724 -07 000000626 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:11:16.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:16.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.734 -07 000000480 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:11:16.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.744 -07 000000626 INF: FPGA: Recv ZSGSRD 35514
17-03-18 06:11:16.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.754 -07 000000382 INF: FPGA: Recv ZSGSRD 35515
17-03-18 06:11:16.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35517
17-03-18 06:11:16.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.774 -07 000000382 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:11:16.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.784 -07 000000626 INF: FPGA: Recv ZSGSRD 35515
17-03-18 06:11:16.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.794 -07 000000382 INF: FPGA: Recv ZSGSRD 35515
17-03-18 06:11:16.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.804 -07 000000480 INF: FPGA: Recv ZSGSRD 35516
17-03-18 06:11:16.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:16.814 -07 000000626 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:11:16.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:16.824 -07 000000437 INF: FPGA: Recv ZPIEZORD 31267
17-03-18 06:11:16.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:16.834 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.4 V.
17-03-18 06:11:16.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35514 (-167.6 uncal um), Max = 35518 (-167.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:11:16.834 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 2, negNoise = 2
17-03-18 06:11:16.834 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:16.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:16.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:16.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:16.834 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:16.834 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:16.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:16.834 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:16.834 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:16.834 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:16.834 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:16.834 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:16.834 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:16.834 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:16.834 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:16.834 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:16.844 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:16.844 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:16.844 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:16.844 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:16.854 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:16.854 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:11:16.854 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:11:16.854 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:11:16.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36981 150\n [Camera]
17-03-18 06:11:17.054 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:17.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:17.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:17.504 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:17.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:17.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:17.514 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:17.514 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:17.514 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:17.514 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:17.514 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:17.704 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36981 839
17-03-18 06:11:17.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:17.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:11:17.914 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:11:17.914 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:17.914 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:11:17.914 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:11:17.914 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:17.914 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:17.914 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:11:17.914 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:17.924 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:11:18.064 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:18.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:18.064 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:18.074 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:18.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:18.074 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:18.084 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:18.084 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:11:18.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:18.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:11:18.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:18.264 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:18.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36981 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-18 06:11:18.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:18.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168485670437917. ------
17-03-18 06:11:18.384 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:18.384 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17509 mm
17-03-18 06:11:18.384 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:18.384 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:18.384 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:11:18.384 -07 000000461 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:11:18.384 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38248, sync = True, waitForSettling = False)
17-03-18 06:11:18.384 -07 000000501 INF: Z Motor: Moving to -0.175088 mm, started at -0.168486 mm, distance = -6.60 um
17-03-18 06:11:18.394 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 06:11:18.394 -07 000000501 INF: FPGA: Xmit ZDACW 38248\n [Z Motor]
17-03-18 06:11:18.394 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:11:18.404 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:18.404 -07 000000501 INF: FPGA: 'ZDACW 38248' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:11:18.404 -07 000000447 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:11:18.414 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:11:18.414 -07 000000461 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:18.414 -07 000000461 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:18.414 -07 000000461 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:11:18.414 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:18.424 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:18.424 -07 000000480 INF: FPGA: Recv ZDACR 38248
17-03-18 06:11:18.434 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:11:18.434 -07 000000501 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:11:18.434 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:18.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:11:18.474 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:11:18.474 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:18.474 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:11:18.474 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:11:18.474 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:18.474 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:18.474 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:18.474 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:11:18.484 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:11:18.614 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:18.614 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 06:11:18.804 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:11:18.804 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:11:18.854 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:18.864 -07 000000382 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:11:18.864 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:11:18.864 -07 000000461 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:18.864 -07 000000461 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:11:18.864 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 06:11:19.734 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.030322,
17-03-18 06:11:19.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:19.814 -07 000000382 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:11:19.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:19.824 -07 000000461 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:19.854 -07 000000461 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:19.854 -07 000000461 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:19.854 -07 000000461 INF: Y Motor: Moved to 69.0259 after 1466 ms (table move)
17-03-18 06:11:19.854 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175088 mm (DAC = 38248)
17-03-18 06:11:19.854 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.854 -07 000000438 INF: FPGA: Recv ZSGSRD 36551
17-03-18 06:11:19.864 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:19.864 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.864 -07 000000382 INF: FPGA: Recv ZSGSRD 36550
17-03-18 06:11:19.874 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.874 -07 000000438 INF: FPGA: Recv ZSGSRD 36535
17-03-18 06:11:19.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.884 -07 000000382 INF: FPGA: Recv ZSGSRD 36538
17-03-18 06:11:19.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.894 -07 000000461 INF: FPGA: Recv ZSGSRD 36545
17-03-18 06:11:19.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.904 -07 000000438 INF: FPGA: Recv ZSGSRD 36549
17-03-18 06:11:19.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.914 -07 000000382 INF: FPGA: Recv ZSGSRD 36552
17-03-18 06:11:19.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.924 -07 000000382 INF: FPGA: Recv ZSGSRD 36548
17-03-18 06:11:19.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:19.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.934 -07 000000461 INF: FPGA: Recv ZSGSRD 36544
17-03-18 06:11:19.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:19.944 -07 000000382 INF: FPGA: Recv ZSGSRD 36545
17-03-18 06:11:19.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.954 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:19.954 -07 000000382 INF: FPGA: Recv ZPIEZORD 32634
17-03-18 06:11:19.964 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.6 V.
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36546 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36546 (-174.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36535 (-174.1 uncal um), Max = 36552 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36546, posNoise = 6, negNoise = 11
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: After move to -0.175088, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:11:19.964 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:20.014 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:11:20.014 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:20.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:20.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:20.014 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:20.014 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:20.014 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:20.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:20.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:20.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:20.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:20.024 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:20.034 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:11:20.034 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:11:20.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:20.074 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:20.374 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:20.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:20.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:20.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:20.414 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:20.414 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:20.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:11:20.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:11:20.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:20.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:20.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:11:20.514 -07 000000382 INF: Autofocus start
17-03-18 06:11:20.514 -07 000000382 INF: MeasureProfile start
17-03-18 06:11:20.514 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:20.514 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:20.524 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:20.524 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:20.524 -07 000000382 INF: MeasureProfile done
17-03-18 06:11:20.524 -07 000000382 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:11:20.524 -07 000000382 INF: Autofocus finished
17-03-18 06:11:20.724 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:20.724 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:20.724 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.175102608943931. ----------
17-03-18 06:11:20.724 -07 000000610 INF: Cycle	146	Tile	12	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:20.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = True)
17-03-18 06:11:20.734 -07 000000610 INF: Z Motor: Moving to -0.168130 mm, started at -0.175103 mm, distance = 6.97 um
17-03-18 06:11:20.734 -07 000000610 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-18 06:11:20.734 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:11:20.744 -07 000000610 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:20.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:20.744 -07 000000382 INF: FPGA: Recv ZDACR 36728
17-03-18 06:11:20.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:20.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:20.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35469
17-03-18 06:11:20.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.914 -07 000000462 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:11:20.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.924 -07 000000461 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:11:20.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.934 -07 000000438 INF: FPGA: Recv ZSGSRD 35465
17-03-18 06:11:20.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.944 -07 000000462 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:11:20.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.954 -07 000000382 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:11:20.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:11:20.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35467
17-03-18 06:11:20.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.984 -07 000000462 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:11:20.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:20.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:20.994 -07 000000382 INF: FPGA: Recv ZSGSRD 35460
17-03-18 06:11:21.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:21.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:21.004 -07 000000462 INF: FPGA: Recv ZPIEZORD 31198
17-03-18 06:11:21.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:21.014 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.4 V.
17-03-18 06:11:21.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.8 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35460 (-167.3 uncal um), Max = 35469 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:11:21.014 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 5, negNoise = 4
17-03-18 06:11:21.014 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:21.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:21.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:21.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:21.014 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:21.014 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:21.014 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:21.014 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:21.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:21.014 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:21.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:21.014 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:21.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:21.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:21.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:21.024 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:21.024 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:21.024 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:21.024 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:11:21.024 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:21.024 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:11:21.034 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:21.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36905 150\n [Camera]
17-03-18 06:11:21.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:21.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:21.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:21.684 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:21.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:21.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:21.684 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:21.694 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:21.694 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:21.694 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:21.694 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:21.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:21.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:21.874 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36905 839
17-03-18 06:11:22.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:22.084 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:11:22.084 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:11:22.084 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:22.084 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:11:22.084 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:11:22.084 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:22.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:22.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:11:22.094 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:22.094 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:11:22.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:22.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:22.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:22.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:22.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:22.254 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:22.254 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:22.254 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:22.254 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:22.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:11:22.434 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:22.434 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:22.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36905 150' command took 2 ms to send, 1398 ms to get response, and 1406 ms overall
17-03-18 06:11:22.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:22.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168151611406546. ------
17-03-18 06:11:22.444 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17450 mm
17-03-18 06:11:22.444 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:22.444 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:22.444 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:11:22.444 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:11:22.444 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:22.444 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38119, sync = True, waitForSettling = False)
17-03-18 06:11:22.444 -07 000000424 INF: Z Motor: Moving to -0.174498 mm, started at -0.168152 mm, distance = -6.35 um
17-03-18 06:11:22.454 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:11:22.454 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:22.454 -07 000000438 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:11:22.464 -07 000000424 INF: FPGA: Xmit ZDACW 38119\n [Z Motor]
17-03-18 06:11:22.464 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:11:22.464 -07 000000502 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:22.464 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:11:22.464 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:22.464 -07 000000502 INF: Y Motor: Moving 1354 steps-34
17-03-18 06:11:22.474 -07 000000424 INF: FPGA: 'ZDACW 38119' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:11:22.474 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:22.484 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:22.494 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:22.494 -07 000000512 INF: FPGA: Recv ZDACR 38119
17-03-18 06:11:22.504 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:11:22.504 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:11:22.634 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:11:22.634 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:11:22.634 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:22.634 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:22.644 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:11:22.644 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:11:22.644 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:22.644 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:11:22.644 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:22.644 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:11:22.674 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:22.674 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:11:22.854 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:11:22.854 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:11:22.904 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:22.914 -07 000000626 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:11:22.914 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:11:22.914 -07 000000502 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:22.914 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:11:22.914 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.847 mm, average velocity = 2.166 mm/sec
17-03-18 06:11:23.864 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:23.864 -07 000000479 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:11:23.874 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:23.874 -07 000000502 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:23.904 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:23.904 -07 000000502 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:23.904 -07 000000502 INF: Y Motor: Moved to 69.8618 after 1456 ms (table move)
17-03-18 06:11:23.904 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174498 mm (DAC = 38119)
17-03-18 06:11:23.904 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.914 -07 000000467 INF: FPGA: Recv ZSGSRD 36448
17-03-18 06:11:23.914 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:11:23.914 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.914 -07 000000629 INF: FPGA: Recv ZSGSRD 36452
17-03-18 06:11:23.924 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:23.924 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.924 -07 000000424 INF: FPGA: Recv ZSGSRD 36449
17-03-18 06:11:23.934 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.934 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.934 -07 000000502 INF: FPGA: Recv ZSGSRD 36451
17-03-18 06:11:23.944 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.944 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.944 -07 000000474 INF: FPGA: Recv ZSGSRD 36449
17-03-18 06:11:23.954 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.954 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.954 -07 000000629 INF: FPGA: Recv ZSGSRD 36446
17-03-18 06:11:23.964 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.964 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.964 -07 000000424 INF: FPGA: Recv ZSGSRD 36456
17-03-18 06:11:23.974 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.974 -07 000000585 INF: FPGA: Recv ZSGSRD 36456
17-03-18 06:11:23.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.984 -07 000000447 INF: FPGA: Recv ZSGSRD 36451
17-03-18 06:11:23.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:23.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:23.994 -07 000000447 INF: FPGA: Recv ZSGSRD 36456
17-03-18 06:11:24.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.004 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:24.004 -07 000000447 INF: FPGA: Recv ZPIEZORD 32530
17-03-18 06:11:24.014 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.817 V. Piezo Error = -8.7 V.
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36451 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36451 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36446 (-173.6 uncal um), Max = 36456 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36451, posNoise = 5, negNoise = 5
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: After move to -0.174498, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:11:24.014 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:24.064 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 06:11:24.064 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:24.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:24.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:24.064 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:24.064 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:24.064 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:24.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:24.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:24.064 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:24.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:24.074 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:24.074 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:24.074 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:11:24.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:24.124 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:24.424 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:24.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:24.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:24.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:11:24.464 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:24.464 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:24.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:11:24.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:11:24.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:24.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:11:24.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:11:24.564 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:24.564 -07 000000382 INF: Autofocus start
17-03-18 06:11:24.564 -07 000000382 INF: MeasureProfile start
17-03-18 06:11:24.574 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:24.574 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:24.574 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:24.574 -07 000000382 INF: MeasureProfile done
17-03-18 06:11:24.574 -07 000000382 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 06:11:24.574 -07 000000382 INF: Autofocus finished
17-03-18 06:11:24.774 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:24.774 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 06:11:24.784 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174492308790464. ----------
17-03-18 06:11:24.784 -07 000000610 INF: Cycle	146	Tile	13	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:24.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36525, sync = True, waitForSettling = True)
17-03-18 06:11:24.784 -07 000000610 INF: Z Motor: Moving to -0.167201 mm, started at -0.174492 mm, distance = 7.29 um
17-03-18 06:11:24.784 -07 000000610 INF: FPGA: Xmit ZDACW 36525\n [Z Motor]
17-03-18 06:11:24.794 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:11:24.794 -07 000000610 INF: FPGA: 'ZDACW 36525' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:11:24.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:24.794 -07 000000382 INF: FPGA: Recv ZDACR 36525
17-03-18 06:11:24.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:24.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:24.954 -07 000000447 INF: FPGA: Recv ZSGSRD 35314
17-03-18 06:11:24.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:24.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:24.964 -07 000000479 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:11:24.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:24.974 -07 000000447 INF: FPGA: Recv ZSGSRD 35320
17-03-18 06:11:24.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:24.984 -07 000000447 INF: FPGA: Recv ZSGSRD 35318
17-03-18 06:11:24.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:24.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:24.994 -07 000000447 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:11:25.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:25.004 -07 000000479 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:11:25.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:25.014 -07 000000447 INF: FPGA: Recv ZSGSRD 35318
17-03-18 06:11:25.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:25.024 -07 000000447 INF: FPGA: Recv ZSGSRD 35317
17-03-18 06:11:25.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:25.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35322
17-03-18 06:11:25.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:25.044 -07 000000479 INF: FPGA: Recv ZSGSRD 35313
17-03-18 06:11:25.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:25.054 -07 000000382 INF: FPGA: Recv ZPIEZORD 31025
17-03-18 06:11:25.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:25.064 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.5 V.
17-03-18 06:11:25.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35318 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35318 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35313 (-166.3 uncal um), Max = 35323 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:25.064 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35318, posNoise = 5, negNoise = 5
17-03-18 06:11:25.064 -07 000000610 INF: Z Motor: After move to -0.167201, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:25.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:11:25.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:25.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:25.064 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:25.064 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:25.064 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:25.064 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:25.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:25.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:25.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:25.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:25.074 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:25.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:25.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:25.074 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:25.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:25.074 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:25.084 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:25.084 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:11:25.084 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:11:25.084 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:11:25.094 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.0344,
17-03-18 06:11:25.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36701 150\n [Camera]
17-03-18 06:11:25.294 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:25.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:25.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:25.754 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:25.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:25.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) start.
17-03-18 06:11:25.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:25.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:25.754 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:25.754 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:25.754 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:11:25.944 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36701 839
17-03-18 06:11:26.094 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:26.144 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:11:26.144 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:11:26.144 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:26.144 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:26.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:11:26.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:11:26.154 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:26.154 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:26.154 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:11:26.154 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:11:26.314 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:26.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:26.314 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:26.314 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:26.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:11:26.314 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:26.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:26.314 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:26.314 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:26.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:11:26.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:26.504 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:26.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36701 150' command took 2 ms to send, 1397 ms to get response, and 1421 ms overall
17-03-18 06:11:26.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:26.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167213676433848. ------
17-03-18 06:11:26.634 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17361 mm
17-03-18 06:11:26.634 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:26.634 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:11:26.634 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:11:26.634 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37925, sync = True, waitForSettling = False)
17-03-18 06:11:26.634 -07 000000467 INF: Z Motor: Moving to -0.173610 mm, started at -0.167214 mm, distance = -6.40 um
17-03-18 06:11:26.644 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:26.644 -07 000000629 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:11:26.654 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:26.654 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:11:26.654 -07 000000501 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:26.654 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:26.654 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:26.654 -07 000000501 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:11:26.664 -07 000000467 INF: FPGA: Xmit ZDACW 37925\n [Z Motor]
17-03-18 06:11:26.664 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:11:26.664 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:11:26.674 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:26.674 -07 000000467 INF: FPGA: 'ZDACW 37925' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 06:11:26.684 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:26.694 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:26.694 -07 000000629 INF: FPGA: Recv ZDACR 37925
17-03-18 06:11:26.704 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:11:26.704 -07 000000467 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-18 06:11:26.714 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:11:26.714 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:11:26.714 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:26.714 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:11:26.714 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:11:26.714 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:26.714 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:26.724 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:11:26.724 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:11:26.724 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:11:26.834 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:26.884 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:26.884 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:11:27.044 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:11:27.044 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:11:27.094 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:27.104 -07 000000569 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:11:27.104 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:11:27.104 -07 000000501 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:27.104 -07 000000501 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:11:27.104 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.841 mm, average velocity = 2.145 mm/sec
17-03-18 06:11:28.054 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:28.054 -07 000000467 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:11:28.064 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:28.064 -07 000000501 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:28.094 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:28.094 -07 000000501 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:28.094 -07 000000501 INF: Y Motor: Moved to 70.6870 after 1458 ms (table move)
17-03-18 06:11:28.094 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173610 mm (DAC = 37925)
17-03-18 06:11:28.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.094 -07 000000501 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:11:28.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:28.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.104 -07 000000382 INF: FPGA: Recv ZSGSRD 36320
17-03-18 06:11:28.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.814 -07 000000437 INF: FPGA: Recv ZSGSRD 36310
17-03-18 06:11:28.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 690 ms to get response, and 700 ms overall
17-03-18 06:11:28.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.814 -07 000000382 INF: FPGA: Recv ZSGSRD 36321
17-03-18 06:11:28.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.824 -07 000000437 INF: FPGA: Recv ZSGSRD 36316
17-03-18 06:11:28.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36316
17-03-18 06:11:28.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.844 -07 000000501 INF: FPGA: Recv ZSGSRD 36310
17-03-18 06:11:28.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.854 -07 000000382 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:11:28.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.864 -07 000000479 INF: FPGA: Recv ZSGSRD 36312
17-03-18 06:11:28.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:28.874 -07 000000569 INF: FPGA: Recv ZSGSRD 36311
17-03-18 06:11:28.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.884 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:28.884 -07 000000501 INF: FPGA: Recv ZPIEZORD 32363
17-03-18 06:11:28.894 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.7 V.
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36315 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36310 (-172.7 uncal um), Max = 36321 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36315, posNoise = 6, negNoise = 5
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: After move to -0.173610, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: Settle wait time = 1461 ms, measure time = 794 ms (allowed 150 ms), total time = 2255 ms
17-03-18 06:11:28.894 -07 000000424 INF: Z Motor: Warning: Actual position measuring time = 794 ms, longer than max expected time of 150 ms
17-03-18 06:11:28.894 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2259 ms
17-03-18 06:11:28.894 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:28.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:28.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:28.894 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:28.894 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:28.904 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:28.904 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:28.904 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:28.904 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:28.904 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:28.904 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:28.924 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:11:28.924 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:11:28.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:28.974 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:29.264 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:29.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:29.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:29.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:29.304 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:29.304 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:29.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:11:29.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:11:29.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:29.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:29.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:11:29.404 -07 000000382 INF: Autofocus start
17-03-18 06:11:29.404 -07 000000382 INF: MeasureProfile start
17-03-18 06:11:29.404 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:29.404 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:29.414 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:11:29.414 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:29.414 -07 000000382 INF: MeasureProfile done
17-03-18 06:11:29.414 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:11:29.414 -07 000000382 INF: Autofocus finished
17-03-18 06:11:29.614 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:29.614 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:29.614 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.173618615939184. ----------
17-03-18 06:11:29.614 -07 000000610 INF: Cycle	146	Tile	14	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:29.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36422, sync = True, waitForSettling = True)
17-03-18 06:11:29.624 -07 000000610 INF: Z Motor: Moving to -0.166729 mm, started at -0.173619 mm, distance = 6.89 um
17-03-18 06:11:29.624 -07 000000610 INF: FPGA: Xmit ZDACW 36422\n [Z Motor]
17-03-18 06:11:29.624 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:11:29.634 -07 000000610 INF: FPGA: 'ZDACW 36422' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:29.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:29.634 -07 000000501 INF: FPGA: Recv ZDACR 36422
17-03-18 06:11:29.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:29.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.794 -07 000000437 INF: FPGA: Recv ZSGSRD 35243
17-03-18 06:11:29.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:29.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.804 -07 000000424 INF: FPGA: Recv ZSGSRD 35246
17-03-18 06:11:29.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.814 -07 000000437 INF: FPGA: Recv ZSGSRD 35247
17-03-18 06:11:29.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.824 -07 000000569 INF: FPGA: Recv ZSGSRD 35247
17-03-18 06:11:29.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.834 -07 000000447 INF: FPGA: Recv ZSGSRD 35250
17-03-18 06:11:29.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35240
17-03-18 06:11:29.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.854 -07 000000382 INF: FPGA: Recv ZSGSRD 35244
17-03-18 06:11:29.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.864 -07 000000479 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:11:29.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35246
17-03-18 06:11:29.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:29.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35242
17-03-18 06:11:29.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:29.894 -07 000000382 INF: FPGA: Recv ZPIEZORD 30908
17-03-18 06:11:29.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:29.904 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.5 V.
17-03-18 06:11:29.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35245 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35246 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35240 (-165.8 uncal um), Max = 35250 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:29.904 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35245, posNoise = 5, negNoise = 5
17-03-18 06:11:29.904 -07 000000610 INF: Z Motor: After move to -0.166729, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:29.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:29.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:29.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:29.904 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:29.904 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:29.904 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:29.904 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:29.904 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:29.904 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:29.904 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:29.904 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:29.904 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:29.904 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:29.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:11:29.914 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:29.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:11:29.914 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:29.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:11:29.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:11:29.924 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:11:29.924 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:11:29.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36599 150\n [Camera]
17-03-18 06:11:30.124 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:30.464 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.011254,
17-03-18 06:11:30.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:30.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:30.584 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:30.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:30.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:30.584 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:30.584 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:30.584 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:30.594 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:30.594 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:30.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36599 839
17-03-18 06:11:30.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 991
17-03-18 06:11:30.984 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:11:30.984 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:11:30.984 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:30.984 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:30.984 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:11:30.994 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:11:30.994 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:11:30.994 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:30.994 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:31.004 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:11:31.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:31.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:31.144 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:31.144 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:31.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:31.144 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:31.154 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:31.154 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:31.154 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:31.154 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:11:31.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:31.334 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:31.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36599 150' command took 2 ms to send, 1395 ms to get response, and 1407 ms overall
17-03-18 06:11:31.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:31.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.1667447089475. ------
17-03-18 06:11:31.344 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:31.344 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17349 mm
17-03-18 06:11:31.344 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:31.464 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:31.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 06:11:31.464 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:31.464 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37900, sync = True, waitForSettling = False)
17-03-18 06:11:31.464 -07 000000424 INF: Z Motor: Moving to -0.173495 mm, started at -0.166745 mm, distance = -6.75 um
17-03-18 06:11:31.464 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:11:31.464 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 06:11:31.474 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:31.474 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:11:31.484 -07 000000424 INF: FPGA: Xmit ZDACW 37900\n [Z Motor]
17-03-18 06:11:31.484 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:11:31.484 -07 000000438 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:31.484 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:31.484 -07 000000438 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:11:31.484 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:11:31.494 -07 000000424 INF: FPGA: 'ZDACW 37900' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:11:31.494 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:31.494 -07 000000474 INF: FPGA: Recv ZDACR 37900
17-03-18 06:11:31.504 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:31.504 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:31.504 -07 000000424 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:11:31.554 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:11:31.554 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:11:31.554 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:31.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:11:31.554 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:11:31.554 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:31.554 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:31.564 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:31.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:11:31.564 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:11:31.674 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:31.674 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 204 ms overall
17-03-18 06:11:31.834 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:31.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:31.874 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:11:31.874 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:11:31.924 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:31.934 -07 000000502 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:11:31.934 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:31.934 -07 000000438 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:31.934 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:11:31.934 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 06:11:32.884 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:32.884 -07 000000382 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:11:32.894 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.894 -07 000000438 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:32.924 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:32.924 -07 000000438 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:32.924 -07 000000438 INF: Y Motor: Moved to 71.5176 after 1455 ms (table move)
17-03-18 06:11:32.924 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173495 mm (DAC = 37900)
17-03-18 06:11:32.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36296
17-03-18 06:11:32.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:32.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.934 -07 000000501 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:11:32.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.944 -07 000000447 INF: FPGA: Recv ZSGSRD 36296
17-03-18 06:11:32.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.954 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.954 -07 000000502 INF: FPGA: Recv ZSGSRD 36299
17-03-18 06:11:32.964 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.964 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.964 -07 000000461 INF: FPGA: Recv ZSGSRD 36292
17-03-18 06:11:32.974 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.974 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.974 -07 000000474 INF: FPGA: Recv ZSGSRD 36291
17-03-18 06:11:32.984 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.984 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.984 -07 000000447 INF: FPGA: Recv ZSGSRD 36297
17-03-18 06:11:32.994 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:32.994 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:32.994 -07 000000438 INF: FPGA: Recv ZSGSRD 36300
17-03-18 06:11:33.004 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.004 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:33.004 -07 000000512 INF: FPGA: Recv ZSGSRD 36300
17-03-18 06:11:33.014 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.014 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:33.014 -07 000000501 INF: FPGA: Recv ZSGSRD 36295
17-03-18 06:11:33.024 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.024 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:33.024 -07 000000461 INF: FPGA: Recv ZPIEZORD 32346
17-03-18 06:11:33.034 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.7 V.
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36296 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36291 (-172.6 uncal um), Max = 36300 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36296, posNoise = 4, negNoise = 5
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: After move to -0.173495, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:11:33.034 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:33.084 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 06:11:33.084 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:33.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:33.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:33.084 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:33.084 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:33.084 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:33.084 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:33.084 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:33.084 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:33.094 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:33.094 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:33.094 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:33.094 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:11:33.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:33.144 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:33.444 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:33.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:33.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:33.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:33.484 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:33.484 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:33.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:11:33.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:11:33.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:33.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:33.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:11:33.584 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:33.584 -07 000000461 INF: Autofocus start
17-03-18 06:11:33.584 -07 000000461 INF: MeasureProfile start
17-03-18 06:11:33.584 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:33.594 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:33.594 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:33.594 -07 000000461 INF: MeasureProfile done
17-03-18 06:11:33.594 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:11:33.594 -07 000000461 INF: Autofocus finished
17-03-18 06:11:33.794 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:33.794 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:33.794 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173496555908491. ----------
17-03-18 06:11:33.794 -07 000000610 INF: Cycle	146	Tile	15	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:33.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36432, sync = True, waitForSettling = True)
17-03-18 06:11:33.804 -07 000000610 INF: Z Motor: Moving to -0.166775 mm, started at -0.173497 mm, distance = 6.72 um
17-03-18 06:11:33.804 -07 000000610 INF: FPGA: Xmit ZDACW 36432\n [Z Motor]
17-03-18 06:11:33.804 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:11:33.814 -07 000000610 INF: FPGA: 'ZDACW 36432' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:33.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:33.814 -07 000000462 INF: FPGA: Recv ZDACR 36432
17-03-18 06:11:33.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:33.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:33.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35252
17-03-18 06:11:33.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:33.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:33.984 -07 000000479 INF: FPGA: Recv ZSGSRD 35256
17-03-18 06:11:33.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:33.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:33.994 -07 000000502 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:11:34.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35246
17-03-18 06:11:34.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.014 -07 000000461 INF: FPGA: Recv ZSGSRD 35259
17-03-18 06:11:34.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.024 -07 000000569 INF: FPGA: Recv ZSGSRD 35250
17-03-18 06:11:34.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.034 -07 000000585 INF: FPGA: Recv ZSGSRD 35244
17-03-18 06:11:34.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.044 -07 000000438 INF: FPGA: Recv ZSGSRD 35245
17-03-18 06:11:34.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.054 -07 000000626 INF: FPGA: Recv ZSGSRD 35252
17-03-18 06:11:34.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:34.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35260
17-03-18 06:11:34.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:34.074 -07 000000502 INF: FPGA: Recv ZPIEZORD 30989
17-03-18 06:11:34.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:34.084 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.4 V.
17-03-18 06:11:34.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35251 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35251 (-165.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35244 (-165.9 uncal um), Max = 35260 (-166.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:11:34.084 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35251, posNoise = 9, negNoise = 7
17-03-18 06:11:34.084 -07 000000610 INF: Z Motor: After move to -0.166775, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:34.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:34.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:34.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:34.084 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:34.084 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:34.084 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:34.084 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:34.084 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:34.084 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:34.084 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:34.084 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:34.084 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:34.084 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:34.084 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:34.094 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:34.094 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 06:11:34.094 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:34.104 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:34.104 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:11:34.104 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:11:34.104 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:11:34.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36609 150\n [Camera]
17-03-18 06:11:34.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:34.754 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:34.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:34.764 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:34.764 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:34.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:34.764 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:34.764 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:34.764 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:34.764 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:34.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:34.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36609 839
17-03-18 06:11:35.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:35.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:11:35.164 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:11:35.164 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:35.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:11:35.164 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:11:35.164 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:35.164 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:35.164 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:11:35.164 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:35.174 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:11:35.324 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:35.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:35.324 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:35.324 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:35.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:11:35.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:35.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:35.324 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:35.324 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:35.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:11:35.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:35.514 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:35.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36609 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-18 06:11:35.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:35.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.16678325422035. ------
17-03-18 06:11:35.514 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:35.514 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17323 mm
17-03-18 06:11:35.514 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:35.514 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:11:35.514 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:11:35.514 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37843, sync = True, waitForSettling = False)
17-03-18 06:11:35.514 -07 000000585 INF: Z Motor: Moving to -0.173234 mm, started at -0.166783 mm, distance = -6.45 um
17-03-18 06:11:35.514 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:35.524 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:35.524 -07 000000585 INF: FPGA: Xmit ZDACW 37843\n [Z Motor]
17-03-18 06:11:35.524 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:11:35.534 -07 000000585 INF: FPGA: 'ZDACW 37843' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:35.534 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:35.544 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:35.544 -07 000000626 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:11:35.554 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:35.554 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:11:35.554 -07 000000512 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:35.554 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:35.554 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:11:35.554 -07 000000437 INF: FPGA: Recv ZDACR 37843
17-03-18 06:11:35.564 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:11:35.564 -07 000000585 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:11:35.564 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:35.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:11:35.714 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:11:35.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:35.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:11:35.714 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:11:35.714 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:35.714 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:35.724 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:11:35.724 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:11:35.724 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:11:35.734 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:35.734 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:11:35.824 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.008536,
17-03-18 06:11:35.934 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:11:35.934 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:11:35.994 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:35.994 -07 000000447 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:11:36.004 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:36.004 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:36.004 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:11:36.004 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 06:11:36.834 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:36.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:36.954 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:36.954 -07 000000461 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:11:36.964 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:36.964 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:36.994 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:36.994 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:36.994 -07 000000512 INF: Y Motor: Moved to 72.3481 after 1473 ms (table move)
17-03-18 06:11:36.994 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173234 mm (DAC = 37843)
17-03-18 06:11:36.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.004 -07 000000626 INF: FPGA: Recv ZSGSRD 36260
17-03-18 06:11:37.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:11:37.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.004 -07 000000480 INF: FPGA: Recv ZSGSRD 36259
17-03-18 06:11:37.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:37.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.014 -07 000000447 INF: FPGA: Recv ZSGSRD 36251
17-03-18 06:11:37.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.024 -07 000000585 INF: FPGA: Recv ZSGSRD 36255
17-03-18 06:11:37.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.034 -07 000000626 INF: FPGA: Recv ZSGSRD 36256
17-03-18 06:11:37.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.044 -07 000000461 INF: FPGA: Recv ZSGSRD 36257
17-03-18 06:11:37.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.054 -07 000000626 INF: FPGA: Recv ZSGSRD 36261
17-03-18 06:11:37.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36257
17-03-18 06:11:37.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.074 -07 000000461 INF: FPGA: Recv ZSGSRD 36259
17-03-18 06:11:37.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.084 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:37.084 -07 000000447 INF: FPGA: Recv ZSGSRD 36256
17-03-18 06:11:37.094 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.094 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:37.094 -07 000000437 INF: FPGA: Recv ZPIEZORD 32314
17-03-18 06:11:37.104 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.7 V.
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36257 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36257 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36251 (-172.3 uncal um), Max = 36261 (-172.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36257, posNoise = 4, negNoise = 6
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: After move to -0.173234, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: Settle wait time = 1478 ms, measure time = 102 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:11:37.104 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:37.154 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:11:37.154 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:37.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:37.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:37.154 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:37.154 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:37.154 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:37.154 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:37.154 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:37.154 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:37.164 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:37.164 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:37.164 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:37.164 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:11:37.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:37.214 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:37.514 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:37.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:37.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:37.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) start.
17-03-18 06:11:37.554 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:37.554 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:37.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:11:37.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:11:37.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:37.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:11:37.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:11:37.654 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:37.654 -07 000000437 INF: Autofocus start
17-03-18 06:11:37.654 -07 000000437 INF: MeasureProfile start
17-03-18 06:11:37.654 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:37.664 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:11:37.664 -07 000000437 INF: MeasureProfile done
17-03-18 06:11:37.664 -07 000000437 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:11:37.674 -07 000000437 INF: Autofocus finished
17-03-18 06:11:37.674 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:37.874 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:37.874 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:11:37.874 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173246011634962. ----------
17-03-18 06:11:37.874 -07 000000610 INF: Cycle	146	Tile	16	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:37.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36357, sync = True, waitForSettling = True)
17-03-18 06:11:37.884 -07 000000610 INF: Z Motor: Moving to -0.166432 mm, started at -0.173246 mm, distance = 6.81 um
17-03-18 06:11:37.884 -07 000000610 INF: FPGA: Xmit ZDACW 36357\n [Z Motor]
17-03-18 06:11:37.884 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:11:37.894 -07 000000610 INF: FPGA: 'ZDACW 36357' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:37.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:37.894 -07 000000512 INF: FPGA: Recv ZDACR 36357
17-03-18 06:11:37.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:37.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:38.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35196
17-03-18 06:11:38.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.064 -07 000000585 INF: FPGA: Recv ZSGSRD 35207
17-03-18 06:11:38.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35199
17-03-18 06:11:38.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.084 -07 000000512 INF: FPGA: Recv ZSGSRD 35195
17-03-18 06:11:38.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35202
17-03-18 06:11:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.104 -07 000000512 INF: FPGA: Recv ZSGSRD 35195
17-03-18 06:11:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35205
17-03-18 06:11:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35200
17-03-18 06:11:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.134 -07 000000461 INF: FPGA: Recv ZSGSRD 35196
17-03-18 06:11:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:38.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35200
17-03-18 06:11:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:38.154 -07 000000461 INF: FPGA: Recv ZPIEZORD 30909
17-03-18 06:11:38.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:38.164 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.4 V.
17-03-18 06:11:38.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35200 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35200 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35195 (-165.6 uncal um), Max = 35207 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:38.164 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35200, posNoise = 7, negNoise = 5
17-03-18 06:11:38.164 -07 000000610 INF: Z Motor: After move to -0.166432, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:38.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:11:38.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:38.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:38.164 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:38.164 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:38.164 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:38.164 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:38.164 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:38.164 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:38.164 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:38.164 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:38.164 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:38.164 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:38.174 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:38.174 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:38.174 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:11:38.174 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:38.184 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:11:38.184 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:11:38.184 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:11:38.184 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:38.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36534 150\n [Camera]
17-03-18 06:11:38.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:38.834 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:38.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:38.834 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:38.834 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:38.834 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:11:38.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:38.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:38.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:38.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:38.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:11:39.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36534 839
17-03-18 06:11:39.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:39.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:11:39.234 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:11:39.234 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:39.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:11:39.244 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:11:39.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:39.244 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:11:39.244 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:11:39.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:39.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:11:39.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:39.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:39.394 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:39.394 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:39.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:11:39.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:39.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:39.404 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:39.404 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:39.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:11:39.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:39.594 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:39.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36534 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-18 06:11:39.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:39.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166455619401121. ------
17-03-18 06:11:39.594 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:39.594 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17284 mm
17-03-18 06:11:39.594 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:39.594 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:11:39.724 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:11:39.724 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:39.724 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 06:11:39.724 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:39.724 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37756, sync = True, waitForSettling = False)
17-03-18 06:11:39.724 -07 000000480 INF: Z Motor: Moving to -0.172836 mm, started at -0.166456 mm, distance = -6.38 um
17-03-18 06:11:39.724 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:11:39.734 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:39.734 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:39.734 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:39.734 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:39.734 -07 000000502 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:11:39.744 -07 000000480 INF: FPGA: Xmit ZDACW 37756\n [Z Motor]
17-03-18 06:11:39.744 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:11:39.754 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:39.754 -07 000000480 INF: FPGA: 'ZDACW 37756' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:11:39.764 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:39.764 -07 000000437 INF: FPGA: Recv ZDACR 37756
17-03-18 06:11:39.774 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:11:39.774 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:11:39.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:11:39.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:11:39.794 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:39.794 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:39.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:11:39.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:11:39.794 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:39.804 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:11:39.804 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:11:39.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:11:39.934 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:39.934 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:11:40.124 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:11:40.124 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:11:40.174 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:40.184 -07 000000437 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:11:40.184 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:40.184 -07 000000502 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:40.184 -07 000000502 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:11:40.184 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-18 06:11:41.134 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:41.134 -07 000000447 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:11:41.144 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:41.144 -07 000000502 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:41.174 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:41.174 -07 000000502 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:41.174 -07 000000502 INF: Y Motor: Moved to 73.1748 after 1450 ms (table move)
17-03-18 06:11:41.174 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172836 mm (DAC = 37756)
17-03-18 06:11:41.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.184 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.018051,
17-03-18 06:11:41.184 -07 000000629 INF: FPGA: Recv ZSGSRD 36198
17-03-18 06:11:41.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:11:41.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.204 -07 000000424 INF: FPGA: Recv ZSGSRD 36192
17-03-18 06:11:41.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:11:41.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.214 -07 000000512 INF: FPGA: Recv ZSGSRD 36196
17-03-18 06:11:41.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.244 -07 000000480 INF: FPGA: Recv ZSGSRD 36190
17-03-18 06:11:41.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:11:41.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.254 -07 000000480 INF: FPGA: Recv ZSGSRD 36199
17-03-18 06:11:41.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:41.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.274 -07 000000502 INF: FPGA: Recv ZSGSRD 36190
17-03-18 06:11:41.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:11:41.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.284 -07 000000437 INF: FPGA: Recv ZSGSRD 36188
17-03-18 06:11:41.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.294 -07 000000480 INF: FPGA: Recv ZSGSRD 36197
17-03-18 06:11:41.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.304 -07 000000461 INF: FPGA: Recv ZSGSRD 36199
17-03-18 06:11:41.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:41.314 -07 000000437 INF: FPGA: Recv ZSGSRD 36193
17-03-18 06:11:41.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.324 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:41.324 -07 000000480 INF: FPGA: Recv ZPIEZORD 32215
17-03-18 06:11:41.334 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.8 V.
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36194 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36194 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36188 (-171.9 uncal um), Max = 36199 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36194, posNoise = 5, negNoise = 6
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: After move to -0.172836, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: Settle wait time = 1452 ms, measure time = 155 ms (allowed 150 ms), total time = 1607 ms
17-03-18 06:11:41.334 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 06:11:41.334 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 06:11:41.334 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:41.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:41.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:41.334 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:41.334 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:41.334 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:41.334 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:41.334 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:41.334 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:41.344 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:11:41.344 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:41.354 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:11:41.354 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:11:41.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:41.404 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:41.704 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:41.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:41.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:41.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:41.744 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:41.744 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:41.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:11:41.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:11:41.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:41.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:41.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:11:41.834 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:41.844 -07 000000461 INF: Autofocus start
17-03-18 06:11:41.844 -07 000000461 INF: MeasureProfile start
17-03-18 06:11:41.844 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:41.844 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:41.854 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:41.854 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:41.854 -07 000000461 INF: MeasureProfile done
17-03-18 06:11:41.854 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:11:41.854 -07 000000461 INF: Autofocus finished
17-03-18 06:11:42.054 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:42.054 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:11:42.064 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172841286270031. ----------
17-03-18 06:11:42.064 -07 000000610 INF: Cycle	146	Tile	17	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:42.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36271, sync = True, waitForSettling = True)
17-03-18 06:11:42.064 -07 000000610 INF: Z Motor: Moving to -0.166038 mm, started at -0.172841 mm, distance = 6.80 um
17-03-18 06:11:42.064 -07 000000610 INF: FPGA: Xmit ZDACW 36271\n [Z Motor]
17-03-18 06:11:42.064 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:11:42.074 -07 000000610 INF: FPGA: 'ZDACW 36271' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:42.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:42.074 -07 000000626 INF: FPGA: Recv ZDACR 36271
17-03-18 06:11:42.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.234 -07 000000461 INF: FPGA: Recv ZSGSRD 35137
17-03-18 06:11:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.244 -07 000000626 INF: FPGA: Recv ZSGSRD 35134
17-03-18 06:11:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35135
17-03-18 06:11:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.264 -07 000000480 INF: FPGA: Recv ZSGSRD 35133
17-03-18 06:11:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35136
17-03-18 06:11:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.284 -07 000000502 INF: FPGA: Recv ZSGSRD 35134
17-03-18 06:11:42.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:11:42.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:11:42.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.314 -07 000000437 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:11:42.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:42.324 -07 000000437 INF: FPGA: Recv ZSGSRD 35135
17-03-18 06:11:42.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:42.334 -07 000000480 INF: FPGA: Recv ZPIEZORD 30819
17-03-18 06:11:42.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:42.344 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -9.5 V.
17-03-18 06:11:42.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35136 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35136 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35133 (-165.2 uncal um), Max = 35142 (-165.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:11:42.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35136, posNoise = 6, negNoise = 3
17-03-18 06:11:42.344 -07 000000610 INF: Z Motor: After move to -0.166038, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:42.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:11:42.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:42.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:42.344 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:42.344 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:42.344 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:42.344 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:42.344 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:42.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:42.344 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:11:42.344 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:42.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:42.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:42.354 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:11:42.354 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:42.354 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:42.354 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:42.364 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:11:42.364 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:11:42.364 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:42.364 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:11:42.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36447 150\n [Camera]
17-03-18 06:11:42.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:43.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:43.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:43.014 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:43.024 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:43.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:43.024 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:43.024 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:43.024 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:43.024 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:43.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:43.214 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36447 839
17-03-18 06:11:43.354 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:43.394 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:11:43.394 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:11:43.394 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:43.394 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:11:43.404 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:11:43.404 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:43.404 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:11:43.404 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:11:43.404 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:11:43.414 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:11:43.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:43.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:43.574 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:43.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:43.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:43.584 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:43.714 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:43.714 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:11:43.714 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:43.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:11:43.764 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:11:43.774 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:43.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36447 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-18 06:11:43.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:43.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166044469824048. ------
17-03-18 06:11:43.774 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:43.774 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17195 mm
17-03-18 06:11:43.774 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:43.774 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:43.774 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:11:43.774 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:11:43.774 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37563, sync = True, waitForSettling = False)
17-03-18 06:11:43.774 -07 000000382 INF: Z Motor: Moving to -0.171952 mm, started at -0.166044 mm, distance = -5.91 um
17-03-18 06:11:43.784 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:11:43.784 -07 000000382 INF: FPGA: Xmit ZDACW 37563\n [Z Motor]
17-03-18 06:11:43.784 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:11:43.794 -07 000000382 INF: FPGA: 'ZDACW 37563' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:43.794 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:43.794 -07 000000569 INF: FPGA: Recv ZDACR 37563
17-03-18 06:11:43.804 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:43.804 -07 000000382 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:11:43.804 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:43.804 -07 000000462 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:11:43.814 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:43.814 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:11:43.814 -07 000000461 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:43.814 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:43.814 -07 000000461 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:11:43.824 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:44.014 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:44.014 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 06:11:44.104 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:11:44.104 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:11:44.104 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:44.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:11:44.104 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:11:44.104 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:44.114 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:44.114 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 06:11:44.114 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:44.114 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 06:11:44.194 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:11:44.194 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:11:44.234 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:44.244 -07 000000437 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:11:44.254 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:44.254 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:44.254 -07 000000461 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:11:44.254 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.848 mm, average velocity = 2.191 mm/sec
17-03-18 06:11:45.204 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:45.204 -07 000000502 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:11:45.214 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:45.214 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:45.244 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:45.244 -07 000000461 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:45.244 -07 000000461 INF: Y Motor: Moved to 74.0068 after 1465 ms (table move)
17-03-18 06:11:45.254 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171952 mm (DAC = 37563)
17-03-18 06:11:45.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.254 -07 000000438 INF: FPGA: Recv ZSGSRD 36062
17-03-18 06:11:45.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.264 -07 000000462 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:11:45.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.274 -07 000000382 INF: FPGA: Recv ZSGSRD 36055
17-03-18 06:11:45.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.284 -07 000000479 INF: FPGA: Recv ZSGSRD 36058
17-03-18 06:11:45.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.294 -07 000000502 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:11:45.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.304 -07 000000479 INF: FPGA: Recv ZSGSRD 36059
17-03-18 06:11:45.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.314 -07 000000502 INF: FPGA: Recv ZSGSRD 36056
17-03-18 06:11:45.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.324 -07 000000569 INF: FPGA: Recv ZSGSRD 36064
17-03-18 06:11:45.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.334 -07 000000438 INF: FPGA: Recv ZSGSRD 36059
17-03-18 06:11:45.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:45.344 -07 000000480 INF: FPGA: Recv ZSGSRD 36052
17-03-18 06:11:45.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.354 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:45.354 -07 000000438 INF: FPGA: Recv ZPIEZORD 32077
17-03-18 06:11:45.364 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.8 V.
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36058 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36052 (-171.0 uncal um), Max = 36064 (-171.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 6, negNoise = 6
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: After move to -0.171952, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: Settle wait time = 1470 ms, measure time = 110 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:11:45.364 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:45.404 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:11:45.404 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:45.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:45.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:45.404 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:45.404 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:45.404 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:45.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:45.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:45.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:45.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:45.404 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:45.414 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:45.414 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:11:45.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:45.464 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:45.764 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:45.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:45.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:45.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:45.804 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:45.804 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:45.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:11:45.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:11:45.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:45.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:45.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:11:45.904 -07 000000438 INF: Autofocus start
17-03-18 06:11:45.904 -07 000000438 INF: MeasureProfile start
17-03-18 06:11:45.904 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:45.904 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:45.914 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:45.914 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:45.914 -07 000000438 INF: MeasureProfile done
17-03-18 06:11:45.914 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:11:45.914 -07 000000438 INF: Autofocus finished
17-03-18 06:11:46.114 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:46.114 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:11:46.114 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.171967593418752. ----------
17-03-18 06:11:46.114 -07 000000610 INF: Cycle	146	Tile	18	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:46.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36078, sync = True, waitForSettling = True)
17-03-18 06:11:46.124 -07 000000610 INF: Z Motor: Moving to -0.165154 mm, started at -0.171968 mm, distance = 6.81 um
17-03-18 06:11:46.124 -07 000000610 INF: FPGA: Xmit ZDACW 36078\n [Z Motor]
17-03-18 06:11:46.124 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:11:46.134 -07 000000610 INF: FPGA: 'ZDACW 36078' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:46.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:46.134 -07 000000438 INF: FPGA: Recv ZDACR 36078
17-03-18 06:11:46.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:46.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.294 -07 000000424 INF: FPGA: Recv ZSGSRD 34993
17-03-18 06:11:46.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:46.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:11:46.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.314 -07 000000424 INF: FPGA: Recv ZSGSRD 34997
17-03-18 06:11:46.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:46.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.324 -07 000000438 INF: FPGA: Recv ZSGSRD 34993
17-03-18 06:11:46.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35008
17-03-18 06:11:46.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.344 -07 000000438 INF: FPGA: Recv ZSGSRD 34995
17-03-18 06:11:46.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.354 -07 000000569 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:11:46.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35002
17-03-18 06:11:46.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.374 -07 000000569 INF: FPGA: Recv ZSGSRD 34997
17-03-18 06:11:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:46.384 -07 000000569 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:11:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:46.394 -07 000000424 INF: FPGA: Recv ZPIEZORD 30681
17-03-18 06:11:46.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:46.404 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.505 V. Piezo Error = -9.5 V.
17-03-18 06:11:46.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 34999 (-164.3 uncal um), Error = 0.9 uncal um, Median = 35000 (-164.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 34993 (-164.3 uncal um), Max = 35008 (-164.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:11:46.404 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34999, posNoise = 9, negNoise = 6
17-03-18 06:11:46.404 -07 000000610 INF: Z Motor: After move to -0.165154, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:46.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:11:46.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:46.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:46.404 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:46.404 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:46.404 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:46.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:46.404 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:46.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:46.404 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:46.404 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:46.414 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:46.414 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:46.414 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:46.414 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:46.414 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:46.414 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:46.414 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:46.414 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:46.424 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:11:46.424 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:11:46.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36254 150\n [Camera]
17-03-18 06:11:46.594 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.985358,
17-03-18 06:11:46.624 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:46.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:47.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:47.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:47.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:47.084 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:47.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:47.084 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:47.084 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:47.084 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:11:47.084 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:47.084 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:11:47.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36254 839
17-03-18 06:11:47.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:47.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:11:47.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:11:47.484 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:47.484 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:11:47.484 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:11:47.484 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:47.484 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:47.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:11:47.484 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:11:47.494 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:11:47.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:47.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:47.644 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:47.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:47.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:47.644 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:47.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:11:47.644 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:47.644 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:47.644 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:11:47.834 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:11:47.834 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:47.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36254 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-18 06:11:47.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:11:47.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165164352760627. ------
17-03-18 06:11:47.834 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:47.834 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17145 mm
17-03-18 06:11:47.834 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:47.844 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:47.844 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:47.844 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:11:47.844 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:11:47.844 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:47.844 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37453, sync = True, waitForSettling = False)
17-03-18 06:11:47.844 -07 000000447 INF: Z Motor: Moving to -0.171449 mm, started at -0.165164 mm, distance = -6.28 um
17-03-18 06:11:47.854 -07 000000447 INF: FPGA: Xmit ZDACW 37453\n [Z Motor]
17-03-18 06:11:47.854 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:11:47.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:47.864 -07 000000447 INF: FPGA: 'ZDACW 37453' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:11:47.864 -07 000000569 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:11:47.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:11:47.874 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:47.874 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:47.874 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:11:47.874 -07 000000626 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:11:47.874 -07 000000437 INF: FPGA: Recv ZDACR 37453
17-03-18 06:11:47.884 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:11:47.884 -07 000000447 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:11:47.884 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:11:48.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:11:48.034 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:11:48.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:48.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:48.034 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:11:48.034 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:11:48.034 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:48.044 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:48.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:11:48.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:11:48.044 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:48.044 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 06:11:48.254 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:11:48.254 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:11:48.294 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:48.294 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:11:48.304 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:11:48.304 -07 000000626 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:48.304 -07 000000626 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:11:48.304 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.203 mm/sec
17-03-18 06:11:49.254 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:49.254 -07 000000501 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:11:49.264 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:49.264 -07 000000626 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:49.284 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:49.284 -07 000000626 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:11:49.284 -07 000000626 INF: Y Motor: Moved to 74.8306 after 1436 ms (table move)
17-03-18 06:11:49.284 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171449 mm (DAC = 37453)
17-03-18 06:11:49.284 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:49.284 -07 000000467 INF: FPGA: Recv ZSGSRD 35977
17-03-18 06:11:49.294 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:11:49.294 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:49.294 -07 000000424 INF: FPGA: Recv ZSGSRD 35976
17-03-18 06:11:49.304 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:49.304 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:49.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35977
17-03-18 06:11:49.314 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:49.314 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:49.314 -07 000000424 INF: FPGA: Recv ZSGSRD 35982
17-03-18 06:11:49.324 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:49.324 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:49.324 -07 000000467 INF: FPGA: Recv ZSGSRD 35981
17-03-18 06:11:49.334 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:49.334 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:50.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35985
17-03-18 06:11:50.314 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 970 ms to get response, and 980 ms overall
17-03-18 06:11:50.314 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:50.314 -07 000000438 INF: FPGA: Recv ZSGSRD 35980
17-03-18 06:11:50.324 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:50.324 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:50.324 -07 000000501 INF: FPGA: Recv ZSGSRD 35977
17-03-18 06:11:50.334 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:50.334 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:50.334 -07 000000424 INF: FPGA: Recv ZSGSRD 35974
17-03-18 06:11:50.344 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:50.344 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:50.344 -07 000000461 INF: FPGA: Recv ZSGSRD 35981
17-03-18 06:11:50.354 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:50.354 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:50.354 -07 000000629 INF: FPGA: Recv ZPIEZORD 31958
17-03-18 06:11:50.364 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.9 V.
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35979 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35974 (-170.5 uncal um), Max = 35985 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35979, posNoise = 6, negNoise = 5
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: After move to -0.171449, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: Settle wait time = 1440 ms, measure time = 1075 ms (allowed 150 ms), total time = 2515 ms
17-03-18 06:11:50.364 -07 000000585 INF: Z Motor: Warning: Actual position measuring time = 1075 ms, longer than max expected time of 150 ms
17-03-18 06:11:50.364 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2522 ms
17-03-18 06:11:50.364 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:50.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:50.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:50.374 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:50.374 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:50.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:50.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:50.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:50.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:50.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:50.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:50.384 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:50.384 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:11:50.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:50.434 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 06:11:50.734 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 06:11:50.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 06:11:50.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:50.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:11:50.764 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:50.764 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:50.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:11:50.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:11:50.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:50.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:11:50.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:11:50.864 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:50.864 -07 000000569 INF: Autofocus start
17-03-18 06:11:50.864 -07 000000569 INF: MeasureProfile start
17-03-18 06:11:50.874 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:50.874 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:50.874 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:50.884 -07 000000569 INF: MeasureProfile done
17-03-18 06:11:50.884 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:11:50.884 -07 000000569 INF: Autofocus finished
17-03-18 06:11:51.074 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:51.074 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-18 06:11:51.084 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171460080659552. ----------
17-03-18 06:11:51.084 -07 000000610 INF: Cycle	146	Tile	19	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:51.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35968, sync = True, waitForSettling = True)
17-03-18 06:11:51.084 -07 000000610 INF: Z Motor: Moving to -0.164651 mm, started at -0.171460 mm, distance = 6.81 um
17-03-18 06:11:51.084 -07 000000610 INF: FPGA: Xmit ZDACW 35968\n [Z Motor]
17-03-18 06:11:51.094 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:11:51.094 -07 000000610 INF: FPGA: 'ZDACW 35968' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:11:51.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:51.094 -07 000000438 INF: FPGA: Recv ZDACR 35968
17-03-18 06:11:51.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:11:51.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:51.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.254 -07 000000585 INF: FPGA: Recv ZSGSRD 34918
17-03-18 06:11:51.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.264 -07 000000424 INF: FPGA: Recv ZSGSRD 34923
17-03-18 06:11:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.274 -07 000000438 INF: FPGA: Recv ZSGSRD 34915
17-03-18 06:11:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.284 -07 000000424 INF: FPGA: Recv ZSGSRD 34923
17-03-18 06:11:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.294 -07 000000438 INF: FPGA: Recv ZSGSRD 34917
17-03-18 06:11:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.304 -07 000000629 INF: FPGA: Recv ZSGSRD 34924
17-03-18 06:11:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.314 -07 000000424 INF: FPGA: Recv ZSGSRD 34927
17-03-18 06:11:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.324 -07 000000569 INF: FPGA: Recv ZSGSRD 34915
17-03-18 06:11:51.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.334 -07 000000501 INF: FPGA: Recv ZSGSRD 34922
17-03-18 06:11:51.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:51.344 -07 000000569 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:11:51.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:51.354 -07 000000501 INF: FPGA: Recv ZPIEZORD 30553
17-03-18 06:11:51.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:51.364 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.488 V. Piezo Error = -9.6 V.
17-03-18 06:11:51.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34920 (-163.8 uncal um), Error = 0.9 uncal um, Median = 34921 (-163.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34915 (-163.8 uncal um), Max = 34927 (-163.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:11:51.364 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34920, posNoise = 7, negNoise = 5
17-03-18 06:11:51.364 -07 000000610 INF: Z Motor: After move to -0.164651, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:51.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 06:11:51.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:51.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:51.364 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:51.364 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:51.364 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:51.364 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:51.364 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:51.364 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:51.364 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:11:51.364 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:51.364 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:51.364 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:51.374 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:51.374 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:51.374 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:11:51.374 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:51.384 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:11:51.384 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:51.384 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:11:51.384 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:11:51.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36144 150\n [Camera]
17-03-18 06:11:51.584 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:11:51.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:51.954 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.027603,
17-03-18 06:11:52.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:11:52.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:11:52.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:11:52.044 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:52.044 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:52.044 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) start.
17-03-18 06:11:52.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:11:52.044 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:52.044 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:52.044 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:11:52.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36144 842
17-03-18 06:11:52.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:11:52.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:11:52.444 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:11:52.444 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:52.444 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:11:52.444 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:11:52.444 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:52.444 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:52.444 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:11:52.444 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:11:52.454 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:11:52.594 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:11:52.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:11:52.594 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:11:52.594 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:11:52.594 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:11:52.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:11:52.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:11:52.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:11:52.604 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:11:52.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:11:52.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:11:52.794 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:11:52.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36144 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-18 06:11:53.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:11:53.004 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:11:53.004 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:53.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:11:53.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:11:53.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:53.014 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:11:53.014 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:11:53.014 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:11:53.014 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:11:53.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:11:53.054 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:11:53.054 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:11:53.094 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:11:53.224 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:11:53.224 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:11:53.234 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 06:11:53.234 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:11:53.234 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:11:53.734 -07 000000629 INF: FPGA: Recv EMIN
17-03-18 06:11:53.734 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 06:11:53.734 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:11:53.734 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 06:11:53.744 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:11:53.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:11:53.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164656840001428. ------
17-03-18 06:11:53.744 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:53.744 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 06:11:53.744 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:11:53.744 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:53.754 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:11:53.754 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:11:53.754 -07 000000467 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:11:53.754 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30430, sync = True, waitForSettling = False)
17-03-18 06:11:53.754 -07 000000626 INF: Z Motor: Moving to -0.139300 mm, started at -0.164657 mm, distance = 25.36 um
17-03-18 06:11:53.764 -07 000000626 INF: FPGA: Xmit ZDACW 30430\n [Z Motor]
17-03-18 06:11:53.764 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:11:53.774 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:53.774 -07 000000626 INF: FPGA: 'ZDACW 30430' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:11:53.774 -07 000000502 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:11:53.784 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:11:53.784 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:11:53.784 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:53.784 -07 000000467 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:11:53.784 -07 000000467 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:11:53.804 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:53.804 -07 000000502 INF: FPGA: Recv ZDACR 30430
17-03-18 06:11:53.814 -07 000000467 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:11:53.814 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:11:53.814 -07 000000626 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:11:53.984 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:11:53.984 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 229 ms overall
17-03-18 06:11:55.434 -07 000000424 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:11:55.434 -07 000000467 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1654 ms overall
17-03-18 06:11:55.434 -07 000000467 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:11:55.434 -07 000000467 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:11:55.434 -07 000000467 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1654 ms, distance = 14.918 mm, average velocity = 9.019 mm/sec
17-03-18 06:11:56.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:11:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:11:57.314 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.000345,
17-03-18 06:11:58.284 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:11:58.284 -07 000000569 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:11:58.294 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:58.294 -07 000000467 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:11:58.334 -07 000000467 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:11:58.334 -07 000000467 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:11:58.334 -07 000000467 INF: Y Motor: Moved to 59.9102 after 4579 ms
17-03-18 06:11:58.334 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139300 mm (DAC = 30430)
17-03-18 06:11:58.334 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30978
17-03-18 06:11:58.344 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:11:58.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.344 -07 000000585 INF: FPGA: Recv ZSGSRD 30972
17-03-18 06:11:58.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.354 -07 000000467 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:11:58.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.364 -07 000000467 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:11:58.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.374 -07 000000585 INF: FPGA: Recv ZSGSRD 30977
17-03-18 06:11:58.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.384 -07 000000467 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:11:58.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30977
17-03-18 06:11:58.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.404 -07 000000467 INF: FPGA: Recv ZSGSRD 30972
17-03-18 06:11:58.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.414 -07 000000585 INF: FPGA: Recv ZSGSRD 30971
17-03-18 06:11:58.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:58.424 -07 000000502 INF: FPGA: Recv ZSGSRD 30976
17-03-18 06:11:58.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.434 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:58.434 -07 000000502 INF: FPGA: Recv ZPIEZORD 26435
17-03-18 06:11:58.444 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30975 (-138.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30971 (-138.5 uncal um), Max = 30978 (-138.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 3, negNoise = 4
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: After move to -0.139300, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: Settle wait time = 4582 ms, measure time = 104 ms (allowed 150 ms), total time = 4686 ms
17-03-18 06:11:58.444 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:11:58.494 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4743 ms
17-03-18 06:11:58.494 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:11:58.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:58.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:58.494 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:58.494 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:11:58.494 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:58.494 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:58.494 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:58.494 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:11:58.514 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 06:11:58.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:11:58.524 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:11:58.524 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:11:58.524 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:11:58.524 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 06:11:58.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:11:58.574 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:11:58.874 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:11:58.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:11:58.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:11:58.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:11:58.914 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:11:58.914 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:11:58.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:11:58.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:11:58.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:11:58.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:11:58.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:11:59.014 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:11:59.014 -07 000000569 INF: Image SNR check: start
17-03-18 06:11:59.014 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:11:59.024 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:11:59.024 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:11:59.024 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=113.12]
17-03-18 06:11:59.024 -07 000000569 INF: Autofocus start
17-03-18 06:11:59.024 -07 000000569 INF: MeasureProfile start
17-03-18 06:11:59.044 -07 000000569 INF: MeasureProfile done
17-03-18 06:11:59.044 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:11:59.044 -07 000000569 INF: Autofocus finished
17-03-18 06:11:59.224 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:11:59.224 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:11:59.224 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139313323102181. ----------
17-03-18 06:11:59.224 -07 000000610 INF: Cycle	146	Tile	1	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:11:59.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28937, sync = True, waitForSettling = True)
17-03-18 06:11:59.234 -07 000000610 INF: Z Motor: Moving to -0.132465 mm, started at -0.139313 mm, distance = 6.85 um
17-03-18 06:11:59.234 -07 000000610 INF: FPGA: Xmit ZDACW 28937\n [Z Motor]
17-03-18 06:11:59.234 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:11:59.244 -07 000000610 INF: FPGA: 'ZDACW 28937' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:11:59.244 -07 000000629 INF: FPGA: Recv ZDACR 28937
17-03-18 06:11:59.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:11:59.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.404 -07 000000502 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:11:59.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:11:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.414 -07 000000502 INF: FPGA: Recv ZSGSRD 29906
17-03-18 06:11:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.424 -07 000000438 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:11:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.434 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-18 06:11:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.444 -07 000000629 INF: FPGA: Recv ZSGSRD 29906
17-03-18 06:11:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29900
17-03-18 06:11:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.464 -07 000000629 INF: FPGA: Recv ZSGSRD 29906
17-03-18 06:11:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.474 -07 000000629 INF: FPGA: Recv ZSGSRD 29908
17-03-18 06:11:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.484 -07 000000502 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:11:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:11:59.494 -07 000000629 INF: FPGA: Recv ZSGSRD 29905
17-03-18 06:11:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:11:59.504 -07 000000502 INF: FPGA: Recv ZPIEZORD 25333
17-03-18 06:11:59.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:11:59.514 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.0 V.
17-03-18 06:11:59.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29908 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29907 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29914 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:11:59.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29908, posNoise = 6, negNoise = 8
17-03-18 06:11:59.514 -07 000000610 INF: Z Motor: After move to -0.132465, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:11:59.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:11:59.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:11:59.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:11:59.514 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:11:59.514 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:11:59.514 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:11:59.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:11:59.514 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:11:59.514 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:11:59.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:11:59.514 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:11:59.514 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:11:59.514 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:11:59.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:11:59.524 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:11:59.524 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:11:59.524 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:11:59.534 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:11:59.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:11:59.544 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:11:59.544 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:11:59.544 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:11:59.544 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 06:11:59.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29114 150\n [Camera]
17-03-18 06:11:59.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:00.204 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:00.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:00.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:00.204 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:00.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:00.204 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:00.214 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:00.214 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:12:00.214 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:00.214 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:12:00.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29114 839
17-03-18 06:12:00.544 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:00.604 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:12:00.604 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:12:00.604 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:00.614 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:00.614 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:12:00.614 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:12:00.614 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:12:00.614 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:00.614 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:00.624 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:12:00.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:00.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:00.764 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:00.764 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:00.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:00.774 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:00.884 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:00.884 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:12:00.884 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:00.884 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:12:00.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:12:00.954 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:00.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29114 150' command took 2 ms to send, 1398 ms to get response, and 1407 ms overall
17-03-18 06:12:00.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:00.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132458688746922. ------
17-03-18 06:12:00.964 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:00.964 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13888 mm
17-03-18 06:12:00.964 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:00.964 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:00.964 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30339, sync = True, waitForSettling = False)
17-03-18 06:12:00.964 -07 000000502 INF: Z Motor: Moving to -0.138883 mm, started at -0.132459 mm, distance = -6.42 um
17-03-18 06:12:00.964 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:12:00.964 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:12:00.974 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:12:00.974 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:00.974 -07 000000629 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:12:00.984 -07 000000502 INF: FPGA: Xmit ZDACW 30339\n [Z Motor]
17-03-18 06:12:00.984 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:12:00.984 -07 000000474 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:00.984 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:00.984 -07 000000474 INF: Y Motor: Moving 1332 steps1
17-03-18 06:12:00.984 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:12:00.994 -07 000000502 INF: FPGA: 'ZDACW 30339' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:12:00.994 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:01.004 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:01.014 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:01.014 -07 000000480 INF: FPGA: Recv ZDACR 30339
17-03-18 06:12:01.024 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:01.024 -07 000000502 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:12:01.194 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:01.194 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:12:01.284 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:12:01.284 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:12:01.284 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:01.284 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:12:01.284 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:12:01.284 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:01.294 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:01.294 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:01.294 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 06:12:01.294 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 06:12:01.374 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:12:01.374 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:12:01.424 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:01.424 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:12:01.434 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:01.434 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:01.434 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:12:01.434 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 06:12:01.834 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:02.384 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:02.384 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:12:02.394 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:02.394 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:02.424 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:02.424 -07 000000474 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:02.424 -07 000000474 INF: Y Motor: Moved to 60.7324 after 1456 ms (table move)
17-03-18 06:12:02.424 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138883 mm (DAC = 30339)
17-03-18 06:12:02.424 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.434 -07 000000474 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:12:02.434 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 06:12:02.434 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.434 -07 000000480 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:12:02.444 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:12:02.444 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.444 -07 000000512 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:12:02.454 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.454 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.454 -07 000000462 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:12:02.464 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.464 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.464 -07 000000474 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:12:02.474 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.474 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.474 -07 000000502 INF: FPGA: Recv ZSGSRD 30909
17-03-18 06:12:02.484 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.484 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.484 -07 000000629 INF: FPGA: Recv ZSGSRD 30911
17-03-18 06:12:02.494 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.494 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30917
17-03-18 06:12:02.504 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.504 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.504 -07 000000437 INF: FPGA: Recv ZSGSRD 30913
17-03-18 06:12:02.514 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.514 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:02.514 -07 000000626 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:12:02.524 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.524 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:02.524 -07 000000629 INF: FPGA: Recv ZPIEZORD 26647
17-03-18 06:12:02.534 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.4 V.
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30909 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30900 (-138.0 uncal um), Max = 30917 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30909, posNoise = 8, negNoise = 9
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: After move to -0.138883, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:12:02.534 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:02.584 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 06:12:02.584 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:02.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:02.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:02.584 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:02.584 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:02.584 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:02.584 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:02.584 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:02.584 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:02.594 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:02.594 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:02.594 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:02.594 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:02.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:03.314 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:03.314 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:03.314 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:03.314 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:03.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:03.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 701 ms to get response, and 707 ms overall
17-03-18 06:12:03.314 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.989471,
17-03-18 06:12:03.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:03.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:12:03.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:12:03.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:03.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:03.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:12:03.514 -07 000000437 INF: Autofocus start
17-03-18 06:12:03.514 -07 000000437 INF: MeasureProfile start
17-03-18 06:12:03.514 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:03.514 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:03.524 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:03.524 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:03.524 -07 000000437 INF: MeasureProfile done
17-03-18 06:12:03.524 -07 000000437 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:03.524 -07 000000437 INF: Autofocus finished
17-03-18 06:12:03.724 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:03.724 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:03.724 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138889325100824. ----------
17-03-18 06:12:03.724 -07 000000610 INF: Cycle	146	Tile	2	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:03.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-18 06:12:03.734 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138889 mm, distance = 6.84 um
17-03-18 06:12:03.734 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-18 06:12:03.734 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:12:03.744 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:03.744 -07 000000512 INF: FPGA: Recv ZDACR 28847
17-03-18 06:12:03.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:12:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:12:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.924 -07 000000382 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:12:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:12:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:12:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:12:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.964 -07 000000382 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:12:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.974 -07 000000479 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:12:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.984 -07 000000447 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:12:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:03.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:03.994 -07 000000462 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:12:04.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:04.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:04.004 -07 000000502 INF: FPGA: Recv ZPIEZORD 25256
17-03-18 06:12:04.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:04.014 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 06:12:04.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29840 (-131.2 uncal um), Max = 29851 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:04.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 6, negNoise = 5
17-03-18 06:12:04.014 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:04.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:12:04.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:04.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:04.014 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:04.014 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:04.014 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:04.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:04.014 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:04.014 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:04.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:04.014 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:04.014 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:04.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:04.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:12:04.014 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:04.024 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:04.024 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:04.034 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 06:12:04.034 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:12:04.034 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms.
17-03-18 06:12:04.034 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:12:04.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29023 150\n [Camera]
17-03-18 06:12:04.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:04.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:04.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:04.694 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:04.694 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:04.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:04.694 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:04.694 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:04.694 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:04.694 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2318012880, 0x0, 391868352) start.
17-03-18 06:12:04.694 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:12:04.884 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 839
17-03-18 06:12:05.034 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:05.094 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2318012880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:12:05.094 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:12:05.094 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:05.104 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:05.104 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:05.104 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:12:05.104 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:12:05.104 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:05.104 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:05.114 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:12:05.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:05.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:05.254 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:05.254 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:05.254 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:12:05.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:05.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:05.264 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:05.264 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:05.264 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:12:05.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:05.444 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:05.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29023 150' command took 2 ms to send, 1397 ms to get response, and 1407 ms overall
17-03-18 06:12:05.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:05.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132053963381991. ------
17-03-18 06:12:05.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:05.454 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13891 mm
17-03-18 06:12:05.454 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:05.454 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30344, sync = True, waitForSettling = False)
17-03-18 06:12:05.454 -07 000000447 INF: Z Motor: Moving to -0.138906 mm, started at -0.132054 mm, distance = -6.85 um
17-03-18 06:12:05.454 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:12:05.454 -07 000000479 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:12:05.454 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:05.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:05.464 -07 000000447 INF: FPGA: Xmit ZDACW 30344\n [Z Motor]
17-03-18 06:12:05.464 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:12:05.474 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:05.474 -07 000000447 INF: FPGA: 'ZDACW 30344' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:12:05.474 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:12:05.484 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:05.484 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:12:05.484 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:05.484 -07 000000479 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:05.484 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:12:05.494 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:05.494 -07 000000467 INF: FPGA: Recv ZDACR 30344
17-03-18 06:12:05.504 -07 000000447 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:05.504 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:05.504 -07 000000447 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:12:05.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:12:05.664 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:12:05.664 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:05.664 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:12:05.664 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:12:05.664 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:05.664 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:05.664 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:12:05.664 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:05.674 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:12:05.684 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:05.684 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:12:05.874 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:12:05.884 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 06:12:05.934 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:05.934 -07 000000467 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:12:05.944 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:05.944 -07 000000479 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:05.944 -07 000000479 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:12:05.944 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-18 06:12:06.834 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:06.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:06.894 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:06.894 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:12:06.904 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:06.904 -07 000000479 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:06.934 -07 000000479 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:06.934 -07 000000479 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:06.934 -07 000000479 INF: Y Motor: Moved to 61.5630 after 1475 ms (table move)
17-03-18 06:12:06.934 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138906 mm (DAC = 30344)
17-03-18 06:12:06.934 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30917
17-03-18 06:12:06.944 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:12:06.944 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.944 -07 000000461 INF: FPGA: Recv ZSGSRD 30918
17-03-18 06:12:06.954 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:06.954 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.954 -07 000000447 INF: FPGA: Recv ZSGSRD 30914
17-03-18 06:12:06.964 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:06.964 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.964 -07 000000447 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:12:06.974 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:06.974 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.974 -07 000000447 INF: FPGA: Recv ZSGSRD 30912
17-03-18 06:12:06.984 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:06.984 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.984 -07 000000382 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:12:06.994 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:06.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:06.994 -07 000000447 INF: FPGA: Recv ZSGSRD 30912
17-03-18 06:12:07.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:07.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30916
17-03-18 06:12:07.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:07.014 -07 000000585 INF: FPGA: Recv ZSGSRD 30914
17-03-18 06:12:07.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:07.024 -07 000000585 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:12:07.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.034 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:07.034 -07 000000447 INF: FPGA: Recv ZPIEZORD 26637
17-03-18 06:12:07.044 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30914 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30914 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30905 (-138.1 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30914, posNoise = 6, negNoise = 9
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: After move to -0.138906, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: Settle wait time = 1480 ms, measure time = 104 ms (allowed 150 ms), total time = 1584 ms
17-03-18 06:12:07.044 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:07.094 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:12:07.094 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:07.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:07.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:07.094 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:07.094 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:07.094 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:07.104 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:07.104 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:07.104 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:07.104 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:07.104 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:07.114 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:12:07.114 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:12:07.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:07.154 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:07.454 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:07.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:07.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:07.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2302985888, 0x0, 559484976) start.
17-03-18 06:12:07.494 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:07.494 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:07.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:12:07.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2302985888, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:12:07.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:07.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:12:07.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:12:07.594 -07 000000585 INF: Autofocus start
17-03-18 06:12:07.594 -07 000000585 INF: MeasureProfile start
17-03-18 06:12:07.594 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:07.594 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:07.604 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:12:07.604 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:07.604 -07 000000585 INF: MeasureProfile done
17-03-18 06:12:07.604 -07 000000585 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:07.604 -07 000000585 INF: Autofocus finished
17-03-18 06:12:07.804 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:07.804 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:07.804 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138921446161533. ----------
17-03-18 06:12:07.814 -07 000000610 INF: Cycle	146	Tile	3	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:07.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28852, sync = True, waitForSettling = True)
17-03-18 06:12:07.814 -07 000000610 INF: Z Motor: Moving to -0.132076 mm, started at -0.138921 mm, distance = 6.85 um
17-03-18 06:12:07.814 -07 000000610 INF: FPGA: Xmit ZDACW 28852\n [Z Motor]
17-03-18 06:12:07.814 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:12:07.824 -07 000000610 INF: FPGA: 'ZDACW 28852' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:07.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:07.824 -07 000000585 INF: FPGA: Recv ZDACR 28852
17-03-18 06:12:07.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:07.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:07.984 -07 000000382 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:12:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:07.994 -07 000000479 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:12:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.004 -07 000000382 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:12:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.014 -07 000000479 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:12:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.024 -07 000000382 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:12:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.034 -07 000000479 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:12:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.044 -07 000000461 INF: FPGA: Recv ZSGSRD 29845
17-03-18 06:12:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.054 -07 000000382 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:12:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:12:08.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:08.074 -07 000000479 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:12:08.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:08.084 -07 000000461 INF: FPGA: Recv ZPIEZORD 25280
17-03-18 06:12:08.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:08.094 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.0 V.
17-03-18 06:12:08.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29845 (-131.3 uncal um), Max = 29857 (-131.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:12:08.094 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 8, negNoise = 4
17-03-18 06:12:08.094 -07 000000610 INF: Z Motor: After move to -0.132076, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:08.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:12:08.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:08.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:08.104 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:08.104 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:08.104 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:08.104 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:08.104 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:08.104 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:08.104 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:08.104 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:08.104 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:08.104 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:08.104 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:08.104 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:08.104 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:08.104 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:08.114 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:12:08.114 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:12:08.114 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:12:08.114 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:12:08.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29028 150\n [Camera]
17-03-18 06:12:08.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:08.674 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.020806,
17-03-18 06:12:08.774 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:08.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:08.774 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:08.774 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:08.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:12:08.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:08.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:08.774 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:08.774 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:08.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:12:08.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29028 839
17-03-18 06:12:09.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:09.154 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:12:09.154 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:12:09.154 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:09.154 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:09.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:12:09.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:12:09.164 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:09.164 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:09.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:12:09.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:12:09.334 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:09.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:09.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:09.334 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:09.334 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:12:09.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:09.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:09.334 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:09.334 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:09.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:12:09.524 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:09.524 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:09.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29028 150' command took 2 ms to send, 1395 ms to get response, and 1406 ms overall
17-03-18 06:12:09.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:09.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132079660230558. ------
17-03-18 06:12:09.534 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:09.534 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13856 mm
17-03-18 06:12:09.534 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:09.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:12:09.744 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:09.744 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:09.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:12:09.744 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:12:09.744 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:09.744 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:09.754 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:12:09.754 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:12:09.754 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:12:09.764 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:12:09.764 -07 000000474 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:12:09.764 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:09.764 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:09.764 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 232 ms overall
17-03-18 06:12:09.764 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30268, sync = True, waitForSettling = False)
17-03-18 06:12:09.764 -07 000000461 INF: Z Motor: Moving to -0.138558 mm, started at -0.132080 mm, distance = -6.48 um
17-03-18 06:12:09.774 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:09.784 -07 000000461 INF: FPGA: Xmit ZDACW 30268\n [Z Motor]
17-03-18 06:12:10.314 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:12:10.314 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:12:10.314 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:10.314 -07 000000461 INF: FPGA: 'ZDACW 30268' command took 0 ms to send, 520 ms to get response, and 543 ms overall
17-03-18 06:12:10.314 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 540 ms to get response, and 547 ms overall
17-03-18 06:12:10.314 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:10.314 -07 000000474 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:10.314 -07 000000474 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:12:10.314 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 530 ms to get response, and 545 ms overall
17-03-18 06:12:10.324 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:10.334 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:10.334 -07 000000569 INF: FPGA: Recv ZDACR 30268
17-03-18 06:12:10.344 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:10.344 -07 000000461 INF: Z Motor: MoveAbsStepped took 572 ms (did NOT wait for settling yet))
17-03-18 06:12:10.694 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:12:10.694 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:12:10.754 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:10.754 -07 000000502 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:12:10.764 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:10.764 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:10.764 -07 000000474 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:12:10.764 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 06:12:11.714 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:11.714 -07 000000502 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:12:11.724 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:11.724 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:11.754 -07 000000474 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:11.754 -07 000000474 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:11.754 -07 000000474 INF: Y Motor: Moved to 62.3945 after 1989 ms (table move)
17-03-18 06:12:11.754 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138558 mm (DAC = 30268)
17-03-18 06:12:11.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.754 -07 000000502 INF: FPGA: Recv ZSGSRD 30863
17-03-18 06:12:11.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:12:11.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.764 -07 000000474 INF: FPGA: Recv ZSGSRD 30865
17-03-18 06:12:11.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.774 -07 000000438 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:12:11.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.784 -07 000000480 INF: FPGA: Recv ZSGSRD 30855
17-03-18 06:12:11.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30851
17-03-18 06:12:11.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.804 -07 000000501 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:12:11.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.814 -07 000000438 INF: FPGA: Recv ZSGSRD 30863
17-03-18 06:12:11.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:12:11.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.834 -07 000000438 INF: FPGA: Recv ZSGSRD 30867
17-03-18 06:12:11.834 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:11.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:11.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:11.844 -07 000000501 INF: FPGA: Recv ZSGSRD 30855
17-03-18 06:12:11.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.854 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:11.854 -07 000000626 INF: FPGA: Recv ZPIEZORD 26643
17-03-18 06:12:11.864 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.3 V.
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30858 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30856 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30850 (-137.7 uncal um), Max = 30867 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30858, posNoise = 9, negNoise = 8
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: After move to -0.138558, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: Settle wait time = 1988 ms, measure time = 105 ms (allowed 150 ms), total time = 2093 ms
17-03-18 06:12:11.864 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:11.914 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2377 ms
17-03-18 06:12:11.914 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:11.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:11.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:11.914 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:11.914 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:11.914 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:11.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:11.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:12:11.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:11.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:11.924 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:11.924 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:11.924 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:11.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:11.974 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:12.274 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:12.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:12.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:12.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:12:12.314 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:12.314 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:12.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-18 06:12:12.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:12:12.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:12.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:12:12.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:12:12.414 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:12.414 -07 000000474 INF: Autofocus start
17-03-18 06:12:12.414 -07 000000474 INF: MeasureProfile start
17-03-18 06:12:12.414 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:12.424 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:12.424 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:12.424 -07 000000474 INF: MeasureProfile done
17-03-18 06:12:12.424 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:12:12.424 -07 000000474 INF: Autofocus finished
17-03-18 06:12:12.624 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:12.624 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:12.624 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138561690281595. ----------
17-03-18 06:12:12.624 -07 000000610 INF: Cycle	146	Tile	4	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:12.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28762, sync = True, waitForSettling = True)
17-03-18 06:12:12.634 -07 000000610 INF: Z Motor: Moving to -0.131664 mm, started at -0.138562 mm, distance = 6.90 um
17-03-18 06:12:12.634 -07 000000610 INF: FPGA: Xmit ZDACW 28762\n [Z Motor]
17-03-18 06:12:12.634 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:12:12.644 -07 000000610 INF: FPGA: 'ZDACW 28762' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:12.644 -07 000000467 INF: FPGA: Recv ZDACR 28762
17-03-18 06:12:12.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:12.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.804 -07 000000626 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:12:12.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:12.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.814 -07 000000512 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:12:12.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.824 -07 000000626 INF: FPGA: Recv ZSGSRD 29779
17-03-18 06:12:12.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.834 -07 000000512 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:12:12.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29792
17-03-18 06:12:12.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.854 -07 000000569 INF: FPGA: Recv ZSGSRD 29780
17-03-18 06:12:12.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29787
17-03-18 06:12:12.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.874 -07 000000569 INF: FPGA: Recv ZSGSRD 29779
17-03-18 06:12:12.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.884 -07 000000569 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:12:12.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:12.894 -07 000000626 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:12:12.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:12.904 -07 000000467 INF: FPGA: Recv ZPIEZORD 25253
17-03-18 06:12:12.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:12.914 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-18 06:12:12.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29779 (-130.8 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:12.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 8, negNoise = 5
17-03-18 06:12:12.914 -07 000000610 INF: Z Motor: After move to -0.131664, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:12.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:12:12.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:12.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:12.914 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:12.914 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:12.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:12.914 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:12.914 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:12.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:12.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:12.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:12.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:12.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:12.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:12:12.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:12.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:12.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:12.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:12:12.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:12:12.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:12:12.934 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:12:12.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28939 150\n [Camera]
17-03-18 06:12:13.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:13.584 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:13.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:13.584 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:13.584 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:13.584 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:12:13.584 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:13.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:13.584 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:13.594 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:13.594 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:12:13.984 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:12:13.984 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:12:13.984 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:13.994 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:12:13.994 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:13.994 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:12:13.994 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:12:13.994 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:13.994 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:14.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28939 839
17-03-18 06:12:14.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:14.004 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:12:14.144 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:14.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:14.144 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:14.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:14.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:14.154 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:14.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:12:14.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:12:14.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:14.554 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:14.564 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:12:14.564 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:12:14.574 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:14.574 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:14.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:14.574 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:14.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 06:12:14.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28939 150' command took 2 ms to send, 1632 ms to get response, and 1640 ms overall
17-03-18 06:12:14.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:14.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131662086441343. ------
17-03-18 06:12:14.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:12:14.954 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:12:14.954 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:14.964 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:14.964 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:12:14.974 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.98264,
17-03-18 06:12:14.984 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:15.814 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13806 mm
17-03-18 06:12:15.814 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:16.314 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:16.314 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1320 ms to get response, and 1331 ms overall
17-03-18 06:12:16.314 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:12:16.314 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:12:16.324 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:16.334 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:17.314 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30160, sync = True, waitForSettling = False)
17-03-18 06:12:17.314 -07 000000585 INF: Z Motor: Moving to -0.138064 mm, started at -0.131662 mm, distance = -6.40 um
17-03-18 06:12:17.314 -07 000000585 INF: FPGA: Xmit ZDACW 30160\n [Z Motor]
17-03-18 06:12:18.314 -07 000000437 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:12:18.314 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:18.314 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1970 ms to get response, and 1998 ms overall
17-03-18 06:12:18.314 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:18.314 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:12:18.314 -07 000000585 INF: FPGA: 'ZDACW 30160' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-18 06:12:18.314 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1980 ms to get response, and 1999 ms overall
17-03-18 06:12:18.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:18.314 -07 000000382 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:18.314 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:18.324 -07 000000382 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:12:18.344 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:18.344 -07 000000424 INF: FPGA: Recv ZDACR 30160
17-03-18 06:12:18.354 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 06:12:18.354 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:18.354 -07 000000585 INF: Z Motor: MoveAbsStepped took 1038 ms (did NOT wait for settling yet))
17-03-18 06:12:18.724 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:12:18.724 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 06:12:18.774 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:18.784 -07 000000424 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:12:18.784 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 06:12:18.784 -07 000000382 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:18.784 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:12:18.784 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.838 mm, average velocity = 2.054 mm/sec
17-03-18 06:12:19.734 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:19.734 -07 000000424 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:12:19.744 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:19.744 -07 000000382 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:19.774 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:19.774 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:19.774 -07 000000382 INF: Y Motor: Moved to 63.2231 after 3459 ms (table move)
17-03-18 06:12:19.774 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138064 mm (DAC = 30160)
17-03-18 06:12:19.774 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.774 -07 000000447 INF: FPGA: Recv ZSGSRD 30784
17-03-18 06:12:19.784 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:12:19.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.784 -07 000000437 INF: FPGA: Recv ZSGSRD 30784
17-03-18 06:12:19.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.794 -07 000000424 INF: FPGA: Recv ZSGSRD 30787
17-03-18 06:12:19.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.804 -07 000000479 INF: FPGA: Recv ZSGSRD 30782
17-03-18 06:12:19.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30785
17-03-18 06:12:19.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:19.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.824 -07 000000437 INF: FPGA: Recv ZSGSRD 30777
17-03-18 06:12:19.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.834 -07 000000382 INF: FPGA: Recv ZSGSRD 30778
17-03-18 06:12:19.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.844 -07 000000479 INF: FPGA: Recv ZSGSRD 30780
17-03-18 06:12:19.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.854 -07 000000585 INF: FPGA: Recv ZSGSRD 30777
17-03-18 06:12:19.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:19.864 -07 000000447 INF: FPGA: Recv ZSGSRD 30783
17-03-18 06:12:19.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.874 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:19.874 -07 000000480 INF: FPGA: Recv ZPIEZORD 26589
17-03-18 06:12:19.884 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V.
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30782 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30782 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30777 (-137.2 uncal um), Max = 30787 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30782, posNoise = 5, negNoise = 5
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: After move to -0.138064, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: Settle wait time = 2463 ms, measure time = 105 ms (allowed 150 ms), total time = 2568 ms
17-03-18 06:12:19.884 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:19.934 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4110 ms
17-03-18 06:12:19.934 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:19.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:19.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:19.934 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:19.934 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:19.934 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:19.934 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:19.934 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:19.934 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:19.944 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:19.944 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:19.944 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:19.944 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:19.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:19.994 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:20.294 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:20.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:20.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:20.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 06:12:20.334 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:20.334 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:20.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 06:12:20.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 06:12:20.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:20.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:12:20.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 06:12:20.434 -07 000000585 INF: Autofocus start
17-03-18 06:12:20.434 -07 000000585 INF: MeasureProfile start
17-03-18 06:12:20.434 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:20.434 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:20.444 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:20.444 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:20.444 -07 000000585 INF: MeasureProfile done
17-03-18 06:12:20.444 -07 000000585 INF: X=64  Z correction [um]=0.2839165
17-03-18 06:12:20.444 -07 000000585 INF: Autofocus finished
17-03-18 06:12:20.644 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:20.644 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:20.644 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138073450158821. ----------
17-03-18 06:12:20.644 -07 000000610 INF: Cycle	146	Tile	5	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:20.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28734, sync = True, waitForSettling = True)
17-03-18 06:12:20.654 -07 000000610 INF: Z Motor: Moving to -0.131536 mm, started at -0.138073 mm, distance = 6.54 um
17-03-18 06:12:20.654 -07 000000610 INF: FPGA: Xmit ZDACW 28734\n [Z Motor]
17-03-18 06:12:20.654 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:12:20.664 -07 000000610 INF: FPGA: 'ZDACW 28734' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:20.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:20.664 -07 000000437 INF: FPGA: Recv ZDACR 28734
17-03-18 06:12:20.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:20.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29764
17-03-18 06:12:20.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.834 -07 000000480 INF: FPGA: Recv ZSGSRD 29766
17-03-18 06:12:20.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.844 -07 000000512 INF: FPGA: Recv ZSGSRD 29765
17-03-18 06:12:20.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.854 -07 000000437 INF: FPGA: Recv ZSGSRD 29762
17-03-18 06:12:20.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29767
17-03-18 06:12:20.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.874 -07 000000629 INF: FPGA: Recv ZSGSRD 29761
17-03-18 06:12:20.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29765
17-03-18 06:12:20.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.894 -07 000000480 INF: FPGA: Recv ZSGSRD 29764
17-03-18 06:12:20.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.904 -07 000000629 INF: FPGA: Recv ZSGSRD 29766
17-03-18 06:12:20.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:20.914 -07 000000480 INF: FPGA: Recv ZSGSRD 29763
17-03-18 06:12:20.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:20.924 -07 000000479 INF: FPGA: Recv ZPIEZORD 25235
17-03-18 06:12:20.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:20.934 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.9 V.
17-03-18 06:12:20.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29761 (-130.7 uncal um), Max = 29767 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:12:20.934 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 3, negNoise = 3
17-03-18 06:12:20.934 -07 000000610 INF: Z Motor: After move to -0.131536, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:20.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:12:20.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:20.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:20.934 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:20.934 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:20.934 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:20.934 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:20.944 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:20.944 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:20.944 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:20.944 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:12:20.954 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:12:20.954 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:12:20.954 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:20.964 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:12:20.964 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 11 ms.
17-03-18 06:12:20.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28911 150\n [Camera]
17-03-18 06:12:21.164 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:21.624 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:21.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:21.624 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:21.624 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:21.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:12:21.994 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:12:21.994 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:12:21.994 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:22.004 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:22.004 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:12:22.014 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:22.014 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28911 839
17-03-18 06:12:22.014 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:22.014 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:22.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:22.014 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:22.014 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:22.014 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:22.014 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:12:22.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:12:22.394 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:12:22.394 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:22.394 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:22.404 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:12:23.314 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:23.314 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:23.314 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:23.314 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:23.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28911 150' command took 2 ms to send, 2330 ms to get response, and 2343 ms overall
17-03-18 06:12:23.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:23.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:23.314 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:23.314 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:23.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:12:23.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:23.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131533602198508. ------
17-03-18 06:12:23.714 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:12:23.714 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:23.714 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:23.724 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:12:23.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:12:23.734 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:23.734 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:23.734 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:12:24.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 06:12:24.144 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:12:24.144 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:24.144 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:12:24.154 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:12:24.164 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:24.814 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:24.814 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 644 ms to get response, and 652 ms overall
17-03-18 06:12:24.814 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.985358,
17-03-18 06:12:24.814 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13792 mm
17-03-18 06:12:24.814 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:24.814 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:24.814 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:12:24.814 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:12:24.814 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30128, sync = True, waitForSettling = False)
17-03-18 06:12:24.814 -07 000000447 INF: Z Motor: Moving to -0.137917 mm, started at -0.131534 mm, distance = -6.38 um
17-03-18 06:12:24.824 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:24.824 -07 000000467 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:12:24.834 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:12:24.834 -07 000000501 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:24.834 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:24.834 -07 000000501 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:12:24.844 -07 000000447 INF: FPGA: Xmit ZDACW 30128\n [Z Motor]
17-03-18 06:12:24.844 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:12:24.854 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:24.854 -07 000000447 INF: FPGA: 'ZDACW 30128' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:12:24.874 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:24.874 -07 000000382 INF: FPGA: Recv ZDACR 30128
17-03-18 06:12:24.884 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:24.884 -07 000000447 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 06:12:25.024 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:25.024 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 200 ms to get response, and 205 ms overall
17-03-18 06:12:25.224 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:12:25.224 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:12:25.274 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:25.284 -07 000000626 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:12:25.284 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:12:25.284 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:25.284 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:12:25.284 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 06:12:26.234 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:26.234 -07 000000382 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:12:26.244 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:26.244 -07 000000501 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:26.264 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:26.264 -07 000000501 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:12:26.264 -07 000000501 INF: Y Motor: Moved to 64.0566 after 1449 ms (table move)
17-03-18 06:12:26.274 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137917 mm (DAC = 30128)
17-03-18 06:12:26.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.274 -07 000000382 INF: FPGA: Recv ZSGSRD 30756
17-03-18 06:12:26.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:26.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.284 -07 000000382 INF: FPGA: Recv ZSGSRD 30749
17-03-18 06:12:26.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30758
17-03-18 06:12:26.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.304 -07 000000501 INF: FPGA: Recv ZSGSRD 30755
17-03-18 06:12:26.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.314 -07 000000585 INF: FPGA: Recv ZSGSRD 30757
17-03-18 06:12:26.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.324 -07 000000626 INF: FPGA: Recv ZSGSRD 30761
17-03-18 06:12:26.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:26.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.334 -07 000000626 INF: FPGA: Recv ZSGSRD 30757
17-03-18 06:12:26.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.344 -07 000000626 INF: FPGA: Recv ZSGSRD 30759
17-03-18 06:12:26.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.354 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.354 -07 000000626 INF: FPGA: Recv ZSGSRD 30763
17-03-18 06:12:26.364 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.364 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:26.364 -07 000000585 INF: FPGA: Recv ZSGSRD 30763
17-03-18 06:12:26.374 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.374 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:26.374 -07 000000585 INF: FPGA: Recv ZPIEZORD 26545
17-03-18 06:12:26.384 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.3 V.
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30758 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30749 (-137.1 uncal um), Max = 30763 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 5, negNoise = 9
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: After move to -0.137917, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:12:26.384 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:26.434 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:12:26.434 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:26.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:26.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:26.434 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:26.434 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:26.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:26.434 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:26.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:26.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:26.444 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:26.444 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:26.454 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:12:26.454 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:12:26.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:26.494 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:26.794 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:26.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:26.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:26.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 06:12:26.844 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:26.844 -07 000000502 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:12:26.844 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:26.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 06:12:26.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:12:26.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:26.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:12:26.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:12:26.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:26.944 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:27.924 -07 000000461 INF: Autofocus start
17-03-18 06:12:27.924 -07 000000461 INF: MeasureProfile start
17-03-18 06:12:27.934 -07 000000461 INF: MeasureProfile done
17-03-18 06:12:27.934 -07 000000461 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:12:27.934 -07 000000461 INF: Autofocus finished
17-03-18 06:12:27.934 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:27.934 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 985 ms to get response, and 991 ms overall
17-03-18 06:12:27.934 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:28.144 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:28.144 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 205 ms overall
17-03-18 06:12:28.144 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.137919269067419. ----------
17-03-18 06:12:28.144 -07 000000610 INF: Cycle	146	Tile	6	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:28.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28652, sync = True, waitForSettling = True)
17-03-18 06:12:28.144 -07 000000610 INF: Z Motor: Moving to -0.131160 mm, started at -0.137919 mm, distance = 6.76 um
17-03-18 06:12:28.144 -07 000000610 INF: FPGA: Xmit ZDACW 28652\n [Z Motor]
17-03-18 06:12:28.154 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:12:28.154 -07 000000610 INF: FPGA: 'ZDACW 28652' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:12:28.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:28.154 -07 000000501 INF: FPGA: Recv ZDACR 28652
17-03-18 06:12:28.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:28.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:28.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29708
17-03-18 06:12:28.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:28.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.324 -07 000000501 INF: FPGA: Recv ZSGSRD 29714
17-03-18 06:12:28.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29707
17-03-18 06:12:28.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.344 -07 000000461 INF: FPGA: Recv ZSGSRD 29704
17-03-18 06:12:28.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29707
17-03-18 06:12:28.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:12:28.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29704
17-03-18 06:12:28.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.384 -07 000000501 INF: FPGA: Recv ZSGSRD 29705
17-03-18 06:12:28.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.394 -07 000000501 INF: FPGA: Recv ZSGSRD 29710
17-03-18 06:12:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:28.404 -07 000000461 INF: FPGA: Recv ZSGSRD 29710
17-03-18 06:12:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:28.414 -07 000000461 INF: FPGA: Recv ZPIEZORD 25182
17-03-18 06:12:28.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:28.424 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-18 06:12:28.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29708 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29707 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29704 (-130.4 uncal um), Max = 29714 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:12:28.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29708, posNoise = 6, negNoise = 4
17-03-18 06:12:28.424 -07 000000610 INF: Z Motor: After move to -0.131160, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:28.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 06:12:28.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:28.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:28.424 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:28.424 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:28.424 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:28.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:28.424 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:28.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:28.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:28.424 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:28.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:28.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:28.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:28.434 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:28.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:28.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:28.444 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:12:28.444 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:12:28.444 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:12:28.454 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:12:28.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28829 150\n [Camera]
17-03-18 06:12:28.654 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:29.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:29.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:29.104 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:29.104 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:29.104 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:12:29.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:29.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:29.114 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:29.114 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:29.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:12:29.484 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:12:29.484 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:12:29.484 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:29.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:12:29.484 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:12:29.484 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:29.494 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:29.494 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:12:29.494 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:29.504 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:12:29.504 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28829 839
17-03-18 06:12:29.504 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:29.664 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:29.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:29.664 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:29.814 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:29.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:29.814 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:29.814 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:29.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:12:29.824 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:29.824 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:12:29.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:29.854 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:29.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28829 150' command took 2 ms to send, 1399 ms to get response, and 1406 ms overall
17-03-18 06:12:29.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:29.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.13117384631857. ------
17-03-18 06:12:29.864 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:29.864 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13778 mm
17-03-18 06:12:29.864 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:29.864 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:12:29.864 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 06:12:29.864 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30099, sync = True, waitForSettling = False)
17-03-18 06:12:29.864 -07 000000480 INF: Z Motor: Moving to -0.137784 mm, started at -0.131174 mm, distance = -6.61 um
17-03-18 06:12:29.864 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:29.874 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:12:29.874 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:29.874 -07 000000461 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:12:29.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:12:29.884 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:29.884 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:29.884 -07 000000424 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:12:29.884 -07 000000480 INF: FPGA: Xmit ZDACW 30099\n [Z Motor]
17-03-18 06:12:29.884 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:12:29.894 -07 000000480 INF: FPGA: 'ZDACW 30099' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:12:29.894 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:29.904 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:29.914 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:29.914 -07 000000512 INF: FPGA: Recv ZDACR 30099
17-03-18 06:12:29.924 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:29.924 -07 000000480 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:12:30.094 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:30.094 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:12:30.194 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:12:30.194 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:12:30.194 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:30.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:12:30.194 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:12:30.194 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:30.204 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:30.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:30.204 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 06:12:30.204 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:12:30.244 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.979922,
17-03-18 06:12:30.274 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:12:30.274 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:12:30.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:30.334 -07 000000438 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:12:30.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:30.344 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:30.344 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:12:30.344 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-18 06:12:31.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:31.294 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:12:31.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:31.304 -07 000000424 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:31.334 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:31.334 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:12:31.334 -07 000000424 INF: Y Motor: Moved to 64.8784 after 1465 ms (table move)
17-03-18 06:12:31.334 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137784 mm (DAC = 30099)
17-03-18 06:12:31.334 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.344 -07 000000438 INF: FPGA: Recv ZSGSRD 30738
17-03-18 06:12:31.344 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 06:12:31.344 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.344 -07 000000479 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:12:31.354 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:31.354 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.354 -07 000000438 INF: FPGA: Recv ZSGSRD 30742
17-03-18 06:12:31.364 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.364 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.364 -07 000000474 INF: FPGA: Recv ZSGSRD 30732
17-03-18 06:12:31.374 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.374 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.374 -07 000000437 INF: FPGA: Recv ZSGSRD 30737
17-03-18 06:12:31.384 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.384 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.384 -07 000000437 INF: FPGA: Recv ZSGSRD 30736
17-03-18 06:12:31.394 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.394 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.394 -07 000000437 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:12:31.404 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.404 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.404 -07 000000437 INF: FPGA: Recv ZSGSRD 30735
17-03-18 06:12:31.414 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.414 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.414 -07 000000437 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:12:31.424 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.424 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:31.424 -07 000000437 INF: FPGA: Recv ZSGSRD 30746
17-03-18 06:12:31.434 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.434 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:31.434 -07 000000437 INF: FPGA: Recv ZPIEZORD 26536
17-03-18 06:12:31.444 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.2 V.
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30738 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30738 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30732 (-137.0 uncal um), Max = 30746 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30738, posNoise = 8, negNoise = 6
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: After move to -0.137784, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:12:31.444 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:31.494 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 06:12:31.494 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:31.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:31.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:31.494 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:31.494 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:31.504 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:31.504 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:31.504 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:31.504 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:31.504 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:31.504 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:31.514 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:12:31.514 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:12:31.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:31.564 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:31.834 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:31.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:31.864 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:31.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:31.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:31.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608871056, 0x0, 559484976) start.
17-03-18 06:12:31.904 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:31.904 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:31.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:12:31.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608871056, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:12:31.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:31.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:31.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:12:32.004 -07 000000585 INF: Autofocus start
17-03-18 06:12:32.004 -07 000000585 INF: MeasureProfile start
17-03-18 06:12:32.004 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:32.014 -07 000000585 INF: MeasureProfile done
17-03-18 06:12:32.014 -07 000000585 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:32.014 -07 000000585 INF: Autofocus finished
17-03-18 06:12:32.014 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:32.014 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 13 ms overall
17-03-18 06:12:32.014 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:32.224 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:32.224 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 06:12:32.224 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137790784824583. ----------
17-03-18 06:12:32.224 -07 000000610 INF: Cycle	146	Tile	7	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:32.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28606, sync = True, waitForSettling = True)
17-03-18 06:12:32.224 -07 000000610 INF: Z Motor: Moving to -0.130950 mm, started at -0.137791 mm, distance = 6.84 um
17-03-18 06:12:32.224 -07 000000610 INF: FPGA: Xmit ZDACW 28606\n [Z Motor]
17-03-18 06:12:32.234 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:12:32.244 -07 000000610 INF: FPGA: 'ZDACW 28606' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:32.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:32.244 -07 000000585 INF: FPGA: Recv ZDACR 28606
17-03-18 06:12:32.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:32.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.404 -07 000000585 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:12:32.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.414 -07 000000585 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:12:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.424 -07 000000437 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:12:32.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.434 -07 000000502 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:12:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.444 -07 000000437 INF: FPGA: Recv ZSGSRD 29680
17-03-18 06:12:32.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.454 -07 000000437 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:12:32.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:12:32.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.474 -07 000000585 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:12:32.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.484 -07 000000437 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:12:32.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:32.494 -07 000000585 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:12:32.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:32.504 -07 000000437 INF: FPGA: Recv ZPIEZORD 25096
17-03-18 06:12:32.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:32.514 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-18 06:12:32.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:12:32.514 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 6, negNoise = 6
17-03-18 06:12:32.514 -07 000000610 INF: Z Motor: After move to -0.130950, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:32.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 06:12:32.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:32.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:32.514 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:32.514 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:32.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:32.514 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:32.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:32.514 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:32.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:12:32.514 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:32.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:32.514 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:32.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:32.524 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:32.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:32.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:32.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:12:32.534 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:12:32.534 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:12:32.534 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:12:32.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28783 150\n [Camera]
17-03-18 06:12:32.744 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:33.194 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:33.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:33.194 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:33.194 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:33.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:33.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:33.204 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:33.204 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:12:33.204 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:33.204 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:12:33.384 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28783 841
17-03-18 06:12:33.534 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:33.594 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:12:33.594 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:12:33.594 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:33.604 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:33.604 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:12:33.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:12:33.604 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:12:33.604 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:33.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:33.614 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:12:33.754 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:33.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:33.754 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:33.754 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:33.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:33.754 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:33.874 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:33.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:12:33.884 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:33.884 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:12:33.944 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:33.944 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:33.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28783 150' command took 2 ms to send, 1397 ms to get response, and 1406 ms overall
17-03-18 06:12:33.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:33.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.13095542310575. ------
17-03-18 06:12:33.954 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:33.954 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13754 mm
17-03-18 06:12:33.954 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:33.954 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:33.954 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:12:33.954 -07 000000629 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 06:12:33.954 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30045, sync = True, waitForSettling = False)
17-03-18 06:12:33.954 -07 000000585 INF: Z Motor: Moving to -0.137537 mm, started at -0.130955 mm, distance = -6.58 um
17-03-18 06:12:33.964 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:33.964 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:33.964 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:12:33.974 -07 000000585 INF: FPGA: Xmit ZDACW 30045\n [Z Motor]
17-03-18 06:12:33.974 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:12:33.974 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:33.974 -07 000000629 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:33.974 -07 000000629 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:12:33.974 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:12:33.984 -07 000000585 INF: FPGA: 'ZDACW 30045' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:12:33.984 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:33.994 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:34.004 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:34.004 -07 000000437 INF: FPGA: Recv ZDACR 30045
17-03-18 06:12:34.014 -07 000000585 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:34.014 -07 000000585 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:12:34.184 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:34.184 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:12:34.274 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:12:34.274 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:12:34.274 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:34.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:12:34.274 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:12:34.274 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:34.284 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:34.284 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:34.284 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 06:12:34.284 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 06:12:34.364 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:12:34.364 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:12:34.424 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:34.424 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:12:34.434 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:34.434 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:34.434 -07 000000629 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:12:34.434 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:12:35.384 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:35.384 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:12:35.394 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.394 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:35.424 -07 000000629 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:35.424 -07 000000629 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:35.424 -07 000000629 INF: Y Motor: Moved to 65.7134 after 1472 ms (table move)
17-03-18 06:12:35.434 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137537 mm (DAC = 30045)
17-03-18 06:12:35.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.434 -07 000000629 INF: FPGA: Recv ZSGSRD 30696
17-03-18 06:12:35.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:35.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.444 -07 000000629 INF: FPGA: Recv ZSGSRD 30700
17-03-18 06:12:35.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.454 -07 000000629 INF: FPGA: Recv ZSGSRD 30694
17-03-18 06:12:35.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.464 -07 000000629 INF: FPGA: Recv ZSGSRD 30700
17-03-18 06:12:35.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.474 -07 000000626 INF: FPGA: Recv ZSGSRD 30695
17-03-18 06:12:35.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.484 -07 000000626 INF: FPGA: Recv ZSGSRD 30701
17-03-18 06:12:35.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.494 -07 000000626 INF: FPGA: Recv ZSGSRD 30699
17-03-18 06:12:35.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.504 -07 000000437 INF: FPGA: Recv ZSGSRD 30702
17-03-18 06:12:35.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.514 -07 000000437 INF: FPGA: Recv ZSGSRD 30705
17-03-18 06:12:35.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:35.524 -07 000000437 INF: FPGA: Recv ZSGSRD 30699
17-03-18 06:12:35.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.534 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:35.534 -07 000000437 INF: FPGA: Recv ZPIEZORD 26504
17-03-18 06:12:35.544 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.2 V.
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30699 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30700 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30694 (-136.7 uncal um), Max = 30705 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30699, posNoise = 6, negNoise = 5
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: After move to -0.137537, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: Settle wait time = 1475 ms, measure time = 109 ms (allowed 150 ms), total time = 1584 ms
17-03-18 06:12:35.544 -07 000000467 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:35.594 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:12:35.594 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:35.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:35.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:35.594 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:35.594 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:35.594 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:35.594 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:35.594 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:35.594 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:35.604 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:35.604 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:35.604 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:12:35.604 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:35.614 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.979922,
17-03-18 06:12:35.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:35.664 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:35.964 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:35.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:35.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:35.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608871056, 0x0, 559484976) start.
17-03-18 06:12:36.004 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:36.004 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:36.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 389 ms overall
17-03-18 06:12:36.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608871056, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:12:36.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:36.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:36.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:12:36.104 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:36.104 -07 000000437 INF: Autofocus start
17-03-18 06:12:36.104 -07 000000437 INF: MeasureProfile start
17-03-18 06:12:36.114 -07 000000437 INF: MeasureProfile done
17-03-18 06:12:36.114 -07 000000437 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:12:36.114 -07 000000437 INF: Autofocus finished
17-03-18 06:12:36.124 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:36.124 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 16 ms overall
17-03-18 06:12:36.124 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:36.324 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:36.324 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:36.324 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137540240551055. ----------
17-03-18 06:12:36.324 -07 000000610 INF: Cycle	146	Tile	8	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:36.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28586, sync = True, waitForSettling = True)
17-03-18 06:12:36.334 -07 000000610 INF: Z Motor: Moving to -0.130858 mm, started at -0.137540 mm, distance = 6.68 um
17-03-18 06:12:36.334 -07 000000610 INF: FPGA: Xmit ZDACW 28586\n [Z Motor]
17-03-18 06:12:36.334 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:12:36.344 -07 000000610 INF: FPGA: 'ZDACW 28586' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:36.344 -07 000000467 INF: FPGA: Recv ZDACR 28586
17-03-18 06:12:36.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.504 -07 000000437 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:12:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:36.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29664
17-03-18 06:12:36.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.524 -07 000000437 INF: FPGA: Recv ZSGSRD 29660
17-03-18 06:12:36.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:12:36.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.544 -07 000000437 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:12:36.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.554 -07 000000479 INF: FPGA: Recv ZSGSRD 29661
17-03-18 06:12:36.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.564 -07 000000437 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:12:36.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:12:36.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:12:36.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:36.594 -07 000000512 INF: FPGA: Recv ZSGSRD 29665
17-03-18 06:12:36.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:36.604 -07 000000479 INF: FPGA: Recv ZPIEZORD 25148
17-03-18 06:12:36.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:36.614 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.9 V.
17-03-18 06:12:36.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29658 (-130.1 uncal um), Max = 29666 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:12:36.614 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 5, negNoise = 3
17-03-18 06:12:36.614 -07 000000610 INF: Z Motor: After move to -0.130858, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:36.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:12:36.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:36.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:36.614 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:36.614 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:36.614 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:36.614 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:36.614 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:36.614 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:36.614 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:36.614 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:36.614 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:36.614 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:36.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:36.624 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:12:36.624 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:36.624 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:36.634 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:12:36.634 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:12:36.634 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:12:36.634 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:12:36.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28763 150\n [Camera]
17-03-18 06:12:36.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:36.844 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:37.294 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:37.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:37.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:37.294 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:37.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:37.294 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:37.294 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:37.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:12:37.294 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:37.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:12:37.484 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28763 839
17-03-18 06:12:37.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:37.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:12:37.684 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:12:37.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:37.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:12:37.684 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:12:37.684 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:37.684 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:37.684 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:12:37.684 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:37.694 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:12:37.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:37.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:37.854 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:37.854 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:37.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2318012880, 0x0, 391868352) start.
17-03-18 06:12:37.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:37.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:37.854 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:37.854 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:37.854 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2353435144, 0x0, 418435064) start.
17-03-18 06:12:38.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:38.164 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:38.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28763 150' command took 2 ms to send, 1515 ms to get response, and 1527 ms overall
17-03-18 06:12:38.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:38.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130871908347907. ------
17-03-18 06:12:38.174 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:38.174 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13725 mm
17-03-18 06:12:38.174 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:38.174 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:38.174 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:12:38.174 -07 000000437 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:12:38.174 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29982, sync = True, waitForSettling = False)
17-03-18 06:12:38.174 -07 000000474 INF: Z Motor: Moving to -0.137249 mm, started at -0.130872 mm, distance = -6.38 um
17-03-18 06:12:38.184 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:38.184 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:38.184 -07 000000467 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:12:38.194 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:12:38.194 -07 000000437 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:38.194 -07 000000437 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:38.194 -07 000000437 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:12:38.194 -07 000000474 INF: FPGA: Xmit ZDACW 29982\n [Z Motor]
17-03-18 06:12:38.194 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:12:38.204 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:38.204 -07 000000474 INF: FPGA: 'ZDACW 29982' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:12:38.214 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:38.224 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:38.224 -07 000000438 INF: FPGA: Recv ZDACR 29982
17-03-18 06:12:38.234 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:38.234 -07 000000474 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:12:38.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2318012880, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:12:38.254 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:12:38.254 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:38.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2353435144, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:12:38.254 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:12:38.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:38.264 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:38.264 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:12:38.264 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:38.274 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:12:38.404 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:38.404 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:12:38.584 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:12:38.584 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 06:12:38.644 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:38.644 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:12:38.654 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:38.654 -07 000000437 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:38.654 -07 000000437 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:12:38.654 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-18 06:12:39.604 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:39.604 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:12:39.614 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:39.614 -07 000000437 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:39.644 -07 000000437 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:39.644 -07 000000437 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:39.644 -07 000000437 INF: Y Motor: Moved to 66.5386 after 1470 ms (table move)
17-03-18 06:12:39.644 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137249 mm (DAC = 29982)
17-03-18 06:12:39.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:39.654 -07 000000479 INF: FPGA: Recv ZSGSRD 30656
17-03-18 06:12:39.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:12:39.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:39.654 -07 000000479 INF: FPGA: Recv ZSGSRD 30657
17-03-18 06:12:39.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:39.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:39.664 -07 000000479 INF: FPGA: Recv ZSGSRD 30655
17-03-18 06:12:39.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:39.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.314 -07 000000437 INF: FPGA: Recv ZSGSRD 30654
17-03-18 06:12:40.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 630 ms to get response, and 640 ms overall
17-03-18 06:12:40.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.314 -07 000000438 INF: FPGA: Recv ZSGSRD 30660
17-03-18 06:12:40.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:40.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.324 -07 000000438 INF: FPGA: Recv ZSGSRD 30656
17-03-18 06:12:40.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.334 -07 000000461 INF: FPGA: Recv ZSGSRD 30650
17-03-18 06:12:40.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30651
17-03-18 06:12:40.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.354 -07 000000474 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:12:40.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:40.364 -07 000000467 INF: FPGA: Recv ZSGSRD 30657
17-03-18 06:12:40.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.374 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:40.374 -07 000000479 INF: FPGA: Recv ZPIEZORD 26454
17-03-18 06:12:40.384 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.2 V.
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30656 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30650 (-136.4 uncal um), Max = 30663 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30656, posNoise = 7, negNoise = 6
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: After move to -0.137249, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: Settle wait time = 1474 ms, measure time = 732 ms (allowed 150 ms), total time = 2206 ms
17-03-18 06:12:40.384 -07 000000447 INF: Z Motor: Warning: Actual position measuring time = 732 ms, longer than max expected time of 150 ms
17-03-18 06:12:40.384 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2210 ms
17-03-18 06:12:40.384 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:40.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:40.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:40.384 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:40.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:40.384 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:40.384 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:40.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:40.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:40.394 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:40.394 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:40.394 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:12:40.394 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:40.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:40.444 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:40.744 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:40.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:40.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:40.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:12:40.784 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:40.784 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:40.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:12:40.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:12:40.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:40.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:40.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:12:40.984 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.996267,
17-03-18 06:12:40.984 -07 000000424 INF: Autofocus start
17-03-18 06:12:40.984 -07 000000424 INF: MeasureProfile start
17-03-18 06:12:40.994 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:40.994 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:40.994 -07 000000424 INF: MeasureProfile done
17-03-18 06:12:40.994 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:40.994 -07 000000424 INF: Autofocus finished
17-03-18 06:12:41.004 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:12:41.014 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:41.214 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:41.214 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:12:41.214 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137263999428959. ----------
17-03-18 06:12:41.214 -07 000000610 INF: Cycle	146	Tile	9	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:41.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28489, sync = True, waitForSettling = True)
17-03-18 06:12:41.224 -07 000000610 INF: Z Motor: Moving to -0.130414 mm, started at -0.137264 mm, distance = 6.85 um
17-03-18 06:12:41.224 -07 000000610 INF: FPGA: Xmit ZDACW 28489\n [Z Motor]
17-03-18 06:12:41.224 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:12:41.234 -07 000000610 INF: FPGA: 'ZDACW 28489' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:41.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:41.234 -07 000000467 INF: FPGA: Recv ZDACR 28489
17-03-18 06:12:41.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:41.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:12:41.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:41.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.404 -07 000000438 INF: FPGA: Recv ZSGSRD 29593
17-03-18 06:12:41.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:12:41.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.424 -07 000000438 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:12:41.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.434 -07 000000438 INF: FPGA: Recv ZSGSRD 29588
17-03-18 06:12:41.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.444 -07 000000438 INF: FPGA: Recv ZSGSRD 29591
17-03-18 06:12:41.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29598
17-03-18 06:12:41.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:12:41.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29591
17-03-18 06:12:41.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:41.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29595
17-03-18 06:12:41.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:41.494 -07 000000474 INF: FPGA: Recv ZPIEZORD 25042
17-03-18 06:12:41.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:41.504 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 06:12:41.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29592 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29588 (-129.6 uncal um), Max = 29598 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:12:41.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29592, posNoise = 6, negNoise = 4
17-03-18 06:12:41.504 -07 000000610 INF: Z Motor: After move to -0.130414, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:41.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:12:41.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:41.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:41.504 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:41.504 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:41.504 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:41.504 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:41.504 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:41.504 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:41.504 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:41.504 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:41.504 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:41.504 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:41.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:41.514 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:41.514 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:41.514 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:41.524 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:12:41.524 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:12:41.524 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:12:41.524 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:12:41.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28666 150\n [Camera]
17-03-18 06:12:41.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:41.834 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:41.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:42.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:42.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:42.184 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:42.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:42.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:42.184 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:42.184 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:42.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:12:42.184 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:42.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:12:42.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28666 839
17-03-18 06:12:42.524 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:42.564 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:12:42.564 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:12:42.564 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:42.574 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:42.574 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:12:42.574 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:12:42.574 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:42.574 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:42.574 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:12:42.574 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:12:42.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:42.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:42.744 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:42.744 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:42.744 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:12:42.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:42.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:42.744 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:42.744 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:42.744 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:12:42.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:42.934 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:42.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28666 150' command took 5 ms to send, 1393 ms to get response, and 1407 ms overall
17-03-18 06:12:42.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:42.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130428637710125. ------
17-03-18 06:12:42.934 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:42.944 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13716 mm
17-03-18 06:12:42.944 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:42.944 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:12:42.944 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:12:42.944 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29962, sync = True, waitForSettling = False)
17-03-18 06:12:42.944 -07 000000569 INF: Z Motor: Moving to -0.137157 mm, started at -0.130429 mm, distance = -6.73 um
17-03-18 06:12:42.944 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:42.954 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:42.954 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:42.954 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:12:42.964 -07 000000569 INF: FPGA: Xmit ZDACW 29962\n [Z Motor]
17-03-18 06:12:42.964 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:12:42.964 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:42.964 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:42.964 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:12:42.964 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:12:42.974 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:42.974 -07 000000569 INF: FPGA: 'ZDACW 29962' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:12:42.984 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:42.994 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:42.994 -07 000000467 INF: FPGA: Recv ZDACR 29962
17-03-18 06:12:43.004 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:43.004 -07 000000569 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:12:43.144 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:12:43.144 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:12:43.144 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:43.144 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:12:43.144 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:12:43.144 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:43.154 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:43.154 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:12:43.154 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:43.154 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:12:43.174 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:43.174 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:12:43.354 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:12:43.354 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 06:12:43.414 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:43.414 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:12:43.424 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:43.424 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:43.424 -07 000000424 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:12:43.424 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:12:44.374 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:44.374 -07 000000502 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:12:44.384 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:44.384 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:44.414 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:44.414 -07 000000424 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:44.414 -07 000000424 INF: Y Motor: Moved to 67.3716 after 1469 ms (table move)
17-03-18 06:12:44.414 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137157 mm (DAC = 29962)
17-03-18 06:12:44.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.414 -07 000000437 INF: FPGA: Recv ZSGSRD 30642
17-03-18 06:12:44.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:12:44.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.424 -07 000000629 INF: FPGA: Recv ZSGSRD 30642
17-03-18 06:12:44.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30642
17-03-18 06:12:44.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.444 -07 000000502 INF: FPGA: Recv ZSGSRD 30641
17-03-18 06:12:44.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.454 -07 000000479 INF: FPGA: Recv ZSGSRD 30637
17-03-18 06:12:44.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.464 -07 000000438 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:12:44.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30637
17-03-18 06:12:44.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30638
17-03-18 06:12:44.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:44.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.494 -07 000000461 INF: FPGA: Recv ZSGSRD 30644
17-03-18 06:12:44.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:44.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:12:44.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.514 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:44.514 -07 000000461 INF: FPGA: Recv ZPIEZORD 26459
17-03-18 06:12:44.524 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.2 V.
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30642 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30637 (-136.3 uncal um), Max = 30644 (-136.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 3, negNoise = 4
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: After move to -0.137157, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: Settle wait time = 1473 ms, measure time = 103 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:12:44.524 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:44.574 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:12:44.574 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:44.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:44.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:44.574 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:44.574 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:44.574 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:44.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:44.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:44.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:44.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:44.584 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:44.594 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:12:44.594 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:12:44.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:44.644 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 06:12:44.944 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:44.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:44.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:44.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) start.
17-03-18 06:12:44.984 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:44.984 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:44.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:12:45.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:12:45.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:45.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:45.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:12:45.084 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:45.084 -07 000000424 INF: Autofocus start
17-03-18 06:12:45.084 -07 000000424 INF: MeasureProfile start
17-03-18 06:12:45.084 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:45.094 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:45.094 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:45.094 -07 000000424 INF: MeasureProfile done
17-03-18 06:12:45.094 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:45.094 -07 000000424 INF: Autofocus finished
17-03-18 06:12:45.294 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:45.294 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:12:45.294 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137167636246832. ----------
17-03-18 06:12:45.294 -07 000000610 INF: Cycle	146	Tile	10	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:45.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28469, sync = True, waitForSettling = True)
17-03-18 06:12:45.304 -07 000000610 INF: Z Motor: Moving to -0.130323 mm, started at -0.137168 mm, distance = 6.84 um
17-03-18 06:12:45.304 -07 000000610 INF: FPGA: Xmit ZDACW 28469\n [Z Motor]
17-03-18 06:12:45.304 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:12:45.314 -07 000000610 INF: FPGA: 'ZDACW 28469' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:45.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:45.314 -07 000000474 INF: FPGA: Recv ZDACR 28469
17-03-18 06:12:45.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:45.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:45.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.474 -07 000000629 INF: FPGA: Recv ZSGSRD 29575
17-03-18 06:12:45.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:45.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.484 -07 000000461 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:12:45.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29578
17-03-18 06:12:45.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.504 -07 000000462 INF: FPGA: Recv ZSGSRD 29573
17-03-18 06:12:45.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.514 -07 000000629 INF: FPGA: Recv ZSGSRD 29575
17-03-18 06:12:45.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29585
17-03-18 06:12:45.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29575
17-03-18 06:12:45.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.544 -07 000000462 INF: FPGA: Recv ZSGSRD 29570
17-03-18 06:12:45.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.554 -07 000000629 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:12:45.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:45.564 -07 000000437 INF: FPGA: Recv ZSGSRD 29582
17-03-18 06:12:45.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:45.574 -07 000000467 INF: FPGA: Recv ZPIEZORD 25038
17-03-18 06:12:45.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:45.584 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -10.0 V.
17-03-18 06:12:45.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29576 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29576 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29570 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:12:45.584 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29576, posNoise = 9, negNoise = 6
17-03-18 06:12:45.584 -07 000000610 INF: Z Motor: After move to -0.130323, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:45.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:12:45.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:45.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:45.584 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:45.584 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:45.584 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:45.584 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:45.584 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:45.584 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:45.584 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:45.584 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:45.584 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:12:45.584 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:45.584 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:45.584 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:45.594 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:45.594 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:45.604 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:12:45.604 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:12:45.604 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:12:45.604 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:12:45.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28646 150\n [Camera]
17-03-18 06:12:45.804 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:46.264 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:46.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:46.264 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:46.264 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:46.264 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:12:46.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:46.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:46.264 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:46.264 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:46.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:12:46.364 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.009895,
17-03-18 06:12:46.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28646 839
17-03-18 06:12:46.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:46.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:12:46.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:12:46.664 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:46.664 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:12:46.664 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:12:46.664 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:46.664 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:46.664 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:12:46.664 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:46.674 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:12:46.824 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:46.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:46.824 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:46.824 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:46.824 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:12:46.824 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:46.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:46.824 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:46.824 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:46.824 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:12:46.834 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:46.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:47.014 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:47.014 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:47.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28646 150' command took 2 ms to send, 1395 ms to get response, and 1407 ms overall
17-03-18 06:12:47.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:47.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130325850315857. ------
17-03-18 06:12:47.024 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:47.024 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13672 mm
17-03-18 06:12:47.024 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:47.144 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:47.144 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 06:12:47.144 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:47.144 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:12:47.144 -07 000000474 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:12:47.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29866, sync = True, waitForSettling = False)
17-03-18 06:12:47.144 -07 000000461 INF: Z Motor: Moving to -0.136718 mm, started at -0.130326 mm, distance = -6.39 um
17-03-18 06:12:47.154 -07 000000461 INF: FPGA: Xmit ZDACW 29866\n [Z Motor]
17-03-18 06:12:47.154 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:12:47.164 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:47.164 -07 000000461 INF: FPGA: 'ZDACW 29866' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:12:47.164 -07 000000438 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:12:47.174 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:12:47.174 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:47.174 -07 000000474 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:47.174 -07 000000474 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:47.174 -07 000000474 INF: Y Motor: Moving 1346 steps-23
17-03-18 06:12:47.174 -07 000000569 INF: FPGA: Recv ZDACR 29866
17-03-18 06:12:47.184 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:47.184 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:12:47.184 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:12:47.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:12:47.224 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:12:47.224 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:47.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:12:47.224 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:12:47.224 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:47.224 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:47.234 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:12:47.234 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:47.234 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:12:47.344 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:47.344 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-18 06:12:47.554 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:12:47.554 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:12:47.604 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:47.614 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:12:47.614 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:12:47.614 -07 000000474 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:47.614 -07 000000474 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 06:12:47.614 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.173 mm/sec
17-03-18 06:12:48.564 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:48.564 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:12:48.574 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.574 -07 000000474 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:48.604 -07 000000474 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:48.604 -07 000000474 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:48.604 -07 000000474 INF: Y Motor: Moved to 68.2046 after 1457 ms (table move)
17-03-18 06:12:48.604 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136718 mm (DAC = 29866)
17-03-18 06:12:48.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.604 -07 000000474 INF: FPGA: Recv ZSGSRD 30577
17-03-18 06:12:48.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:12:48.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.614 -07 000000447 INF: FPGA: Recv ZSGSRD 30570
17-03-18 06:12:48.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30562
17-03-18 06:12:48.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.634 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.634 -07 000000462 INF: FPGA: Recv ZSGSRD 30568
17-03-18 06:12:48.644 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.644 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.644 -07 000000474 INF: FPGA: Recv ZSGSRD 30572
17-03-18 06:12:48.654 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.654 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.654 -07 000000438 INF: FPGA: Recv ZSGSRD 30568
17-03-18 06:12:48.664 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.664 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.664 -07 000000438 INF: FPGA: Recv ZSGSRD 30569
17-03-18 06:12:48.674 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.674 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.674 -07 000000438 INF: FPGA: Recv ZSGSRD 30575
17-03-18 06:12:48.684 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.684 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.684 -07 000000438 INF: FPGA: Recv ZSGSRD 30575
17-03-18 06:12:48.694 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.694 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:48.694 -07 000000474 INF: FPGA: Recv ZSGSRD 30566
17-03-18 06:12:48.704 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.704 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:48.704 -07 000000438 INF: FPGA: Recv ZPIEZORD 26358
17-03-18 06:12:48.714 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.3 V.
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30570 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30570 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30562 (-135.9 uncal um), Max = 30577 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30570, posNoise = 7, negNoise = 8
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: After move to -0.136718, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:12:48.714 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:48.764 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 06:12:48.764 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:48.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:48.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:48.764 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:48.764 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:48.764 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:48.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:48.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:12:48.764 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:48.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:48.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:48.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:48.774 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:48.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:48.824 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:49.124 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:49.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:49.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:49.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:12:49.164 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:49.164 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:49.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:12:49.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:12:49.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:49.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:49.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:12:49.264 -07 000000474 INF: Autofocus start
17-03-18 06:12:49.264 -07 000000474 INF: MeasureProfile start
17-03-18 06:12:49.264 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:49.264 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:49.274 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:49.274 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:49.274 -07 000000474 INF: MeasureProfile done
17-03-18 06:12:49.284 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:12:49.284 -07 000000474 INF: Autofocus finished
17-03-18 06:12:49.474 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:49.474 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:49.474 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136711517184767. ----------
17-03-18 06:12:49.474 -07 000000610 INF: Cycle	146	Tile	11	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:49.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28373, sync = True, waitForSettling = True)
17-03-18 06:12:49.484 -07 000000610 INF: Z Motor: Moving to -0.129883 mm, started at -0.136712 mm, distance = 6.83 um
17-03-18 06:12:49.484 -07 000000610 INF: FPGA: Xmit ZDACW 28373\n [Z Motor]
17-03-18 06:12:49.484 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:12:49.494 -07 000000610 INF: FPGA: 'ZDACW 28373' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:49.494 -07 000000382 INF: FPGA: Recv ZDACR 28373
17-03-18 06:12:49.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:49.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.654 -07 000000382 INF: FPGA: Recv ZSGSRD 29507
17-03-18 06:12:49.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.664 -07 000000382 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:12:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29504
17-03-18 06:12:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.684 -07 000000467 INF: FPGA: Recv ZSGSRD 29512
17-03-18 06:12:49.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:49.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.694 -07 000000467 INF: FPGA: Recv ZSGSRD 29514
17-03-18 06:12:49.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.704 -07 000000462 INF: FPGA: Recv ZSGSRD 29506
17-03-18 06:12:49.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.714 -07 000000462 INF: FPGA: Recv ZSGSRD 29504
17-03-18 06:12:49.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.724 -07 000000462 INF: FPGA: Recv ZSGSRD 29513
17-03-18 06:12:49.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.734 -07 000000462 INF: FPGA: Recv ZSGSRD 29511
17-03-18 06:12:49.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:49.744 -07 000000447 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:12:49.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:49.754 -07 000000447 INF: FPGA: Recv ZPIEZORD 24964
17-03-18 06:12:49.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:49.764 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -10.0 V.
17-03-18 06:12:49.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29509 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29504 (-129.1 uncal um), Max = 29514 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:49.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29509, posNoise = 5, negNoise = 5
17-03-18 06:12:49.764 -07 000000610 INF: Z Motor: After move to -0.129883, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:49.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:12:49.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:49.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:49.764 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:49.764 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:49.764 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:49.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:49.764 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:49.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:49.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:12:49.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:49.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:49.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:49.774 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:12:49.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:49.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:49.774 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:49.774 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:12:49.774 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:12:49.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:12:49.774 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:12:49.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28550 150\n [Camera]
17-03-18 06:12:49.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:50.434 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:50.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:50.434 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:50.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:50.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:50.444 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:50.444 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:50.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:12:50.444 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:50.444 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:12:50.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28550 839
17-03-18 06:12:50.774 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:50.824 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:12:50.824 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:12:50.834 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:50.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:12:50.834 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:50.834 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:12:50.834 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:50.834 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:50.834 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:12:50.844 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:12:50.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:50.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:50.994 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:51.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:51.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:51.004 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:51.004 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:51.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:12:51.004 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:51.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:12:51.184 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:51.194 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:51.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28550 150' command took 2 ms to send, 1402 ms to get response, and 1409 ms overall
17-03-18 06:12:51.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:51.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129895428102359. ------
17-03-18 06:12:51.314 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13653 mm
17-03-18 06:12:51.314 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:51.314 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:51.314 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29825, sync = True, waitForSettling = False)
17-03-18 06:12:51.314 -07 000000467 INF: Z Motor: Moving to -0.136530 mm, started at -0.129895 mm, distance = -6.63 um
17-03-18 06:12:51.314 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:12:51.314 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:12:51.314 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:51.324 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:12:51.324 -07 000000467 INF: FPGA: Xmit ZDACW 29825\n [Z Motor]
17-03-18 06:12:51.324 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:12:51.334 -07 000000467 INF: FPGA: 'ZDACW 29825' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:51.334 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:51.344 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:51.344 -07 000000438 INF: FPGA: Recv YRDPOS 139684
17-03-18 06:12:51.354 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:51.354 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:12:51.354 -07 000000424 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:51.354 -07 000000382 INF: FPGA: Recv ZDACR 29825
17-03-18 06:12:51.354 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:51.354 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-18 06:12:51.364 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:51.364 -07 000000467 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:12:51.364 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:51.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:12:51.394 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:12:51.394 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:51.404 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:51.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:12:51.404 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:12:51.404 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:51.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:51.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:12:51.404 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:12:51.534 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:51.534 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:12:51.724 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.007176,
17-03-18 06:12:51.734 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:12:51.734 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:12:51.794 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:51.794 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:12:51.804 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:51.804 -07 000000424 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:51.804 -07 000000424 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:12:51.804 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.188 mm/sec
17-03-18 06:12:51.834 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:51.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:52.754 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:52.754 -07 000000479 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:12:52.764 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.764 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:52.794 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:52.794 -07 000000424 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:12:52.794 -07 000000424 INF: Y Motor: Moved to 69.0269 after 1474 ms (table move)
17-03-18 06:12:52.794 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136530 mm (DAC = 29825)
17-03-18 06:12:52.794 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.804 -07 000000438 INF: FPGA: Recv ZSGSRD 30543
17-03-18 06:12:52.804 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:12:52.804 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.804 -07 000000502 INF: FPGA: Recv ZSGSRD 30547
17-03-18 06:12:52.814 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.814 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.814 -07 000000424 INF: FPGA: Recv ZSGSRD 30535
17-03-18 06:12:52.824 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.824 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30539
17-03-18 06:12:52.834 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.834 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.834 -07 000000462 INF: FPGA: Recv ZSGSRD 30547
17-03-18 06:12:52.844 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.844 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.844 -07 000000424 INF: FPGA: Recv ZSGSRD 30537
17-03-18 06:12:52.854 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.854 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30554
17-03-18 06:12:52.864 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.864 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.864 -07 000000438 INF: FPGA: Recv ZSGSRD 30545
17-03-18 06:12:52.874 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.874 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.874 -07 000000462 INF: FPGA: Recv ZSGSRD 30546
17-03-18 06:12:52.884 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:52.884 -07 000000424 INF: FPGA: Recv ZSGSRD 30549
17-03-18 06:12:52.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.894 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:52.894 -07 000000462 INF: FPGA: Recv ZPIEZORD 26338
17-03-18 06:12:52.904 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.2 V.
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30544 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30546 (-135.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30535 (-135.7 uncal um), Max = 30554 (-135.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30544, posNoise = 10, negNoise = 9
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: After move to -0.136530, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: Settle wait time = 1478 ms, measure time = 103 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:12:52.904 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:52.954 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:12:52.954 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:52.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:52.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:52.954 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:52.954 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:52.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:52.954 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:52.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:52.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:52.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:52.964 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:52.964 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:52.964 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:12:52.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:53.014 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:53.314 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:53.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:53.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:53.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:12:53.354 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:53.354 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:53.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:12:53.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:12:53.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:53.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:12:53.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:12:53.454 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:53.454 -07 000000467 INF: Autofocus start
17-03-18 06:12:53.454 -07 000000467 INF: MeasureProfile start
17-03-18 06:12:53.454 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:53.464 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:53.464 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:53.464 -07 000000467 INF: MeasureProfile done
17-03-18 06:12:53.464 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:12:53.464 -07 000000467 INF: Autofocus finished
17-03-18 06:12:53.664 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:53.664 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:53.664 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.136544487669082. ----------
17-03-18 06:12:53.674 -07 000000610 INF: Cycle	146	Tile	12	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:53.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28349, sync = True, waitForSettling = True)
17-03-18 06:12:53.674 -07 000000610 INF: Z Motor: Moving to -0.129773 mm, started at -0.136544 mm, distance = 6.77 um
17-03-18 06:12:53.674 -07 000000610 INF: FPGA: Xmit ZDACW 28349\n [Z Motor]
17-03-18 06:12:53.674 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:12:53.684 -07 000000610 INF: FPGA: 'ZDACW 28349' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:12:53.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:53.684 -07 000000467 INF: FPGA: Recv ZDACR 28349
17-03-18 06:12:53.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:53.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.844 -07 000000467 INF: FPGA: Recv ZSGSRD 29492
17-03-18 06:12:53.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:53.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.854 -07 000000467 INF: FPGA: Recv ZSGSRD 29493
17-03-18 06:12:53.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.864 -07 000000467 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:12:53.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.874 -07 000000382 INF: FPGA: Recv ZSGSRD 29491
17-03-18 06:12:53.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29493
17-03-18 06:12:53.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.894 -07 000000382 INF: FPGA: Recv ZSGSRD 29491
17-03-18 06:12:53.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.904 -07 000000382 INF: FPGA: Recv ZSGSRD 29486
17-03-18 06:12:53.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.914 -07 000000424 INF: FPGA: Recv ZSGSRD 29485
17-03-18 06:12:53.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29496
17-03-18 06:12:53.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:53.934 -07 000000424 INF: FPGA: Recv ZSGSRD 29492
17-03-18 06:12:53.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:53.944 -07 000000461 INF: FPGA: Recv ZPIEZORD 24918
17-03-18 06:12:53.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:53.954 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -10.0 V.
17-03-18 06:12:53.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29490 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29492 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29480 (-128.9 uncal um), Max = 29496 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:12:53.954 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29490, posNoise = 6, negNoise = 10
17-03-18 06:12:53.954 -07 000000610 INF: Z Motor: After move to -0.129773, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:53.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:12:53.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:53.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:53.954 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:53.954 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:53.954 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:53.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:53.954 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:53.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:53.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:12:53.954 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:53.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:12:53.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:53.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:53.964 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:53.964 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:53.964 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:53.974 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:12:53.974 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:12:53.974 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:12:53.974 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:12:53.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28526 150\n [Camera]
17-03-18 06:12:54.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:54.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:54.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:54.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:54.634 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:54.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:54.634 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:54.634 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:54.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:12:54.634 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:54.634 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:12:54.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28526 839
17-03-18 06:12:54.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:55.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:12:55.024 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:12:55.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:55.034 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:12:55.034 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:12:55.034 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:55.034 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:55.034 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:12:55.034 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:55.044 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:12:55.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:55.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:55.184 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:55.184 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:55.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:12:55.194 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:55.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:55.194 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:55.194 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:55.194 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:12:55.374 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:12:55.384 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:55.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28526 150' command took 2 ms to send, 1400 ms to get response, and 1407 ms overall
17-03-18 06:12:55.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:55.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.129773368071666. ------
17-03-18 06:12:55.384 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:55.384 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13620 mm
17-03-18 06:12:55.384 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:55.384 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:55.384 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:12:55.384 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 06:12:55.394 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29752, sync = True, waitForSettling = False)
17-03-18 06:12:55.394 -07 000000424 INF: Z Motor: Moving to -0.136196 mm, started at -0.129773 mm, distance = -6.42 um
17-03-18 06:12:55.394 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:12:55.394 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:55.394 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:12:55.404 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:55.404 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:55.404 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:55.404 -07 000000569 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:12:55.404 -07 000000424 INF: FPGA: Xmit ZDACW 29752\n [Z Motor]
17-03-18 06:12:55.404 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:12:55.414 -07 000000424 INF: FPGA: 'ZDACW 29752' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:12:55.414 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:55.424 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:55.434 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:55.434 -07 000000474 INF: FPGA: Recv ZDACR 29752
17-03-18 06:12:55.444 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:55.444 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:12:55.594 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:12:55.594 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:12:55.594 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:55.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:12:55.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:12:55.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:55.604 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:55.604 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:12:55.604 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:12:55.604 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:12:55.614 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:55.614 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:12:55.794 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:12:55.794 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:12:55.844 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:55.854 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:12:55.854 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:12:55.854 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:55.854 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:12:55.854 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 06:12:56.804 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:56.804 -07 000000447 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:12:56.814 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:56.814 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:56.834 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:12:56.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:12:56.844 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:12:56.844 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:12:56.844 -07 000000569 INF: Y Motor: Moved to 69.8628 after 1453 ms (table move)
17-03-18 06:12:56.844 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136196 mm (DAC = 29752)
17-03-18 06:12:56.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.844 -07 000000569 INF: FPGA: Recv ZSGSRD 30489
17-03-18 06:12:56.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:12:56.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30489
17-03-18 06:12:56.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.864 -07 000000502 INF: FPGA: Recv ZSGSRD 30491
17-03-18 06:12:56.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.874 -07 000000502 INF: FPGA: Recv ZSGSRD 30487
17-03-18 06:12:56.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.884 -07 000000502 INF: FPGA: Recv ZSGSRD 30485
17-03-18 06:12:56.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.894 -07 000000438 INF: FPGA: Recv ZSGSRD 30487
17-03-18 06:12:56.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30485
17-03-18 06:12:56.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.914 -07 000000438 INF: FPGA: Recv ZSGSRD 30501
17-03-18 06:12:56.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30490
17-03-18 06:12:56.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:56.934 -07 000000438 INF: FPGA: Recv ZSGSRD 30490
17-03-18 06:12:56.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.944 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:56.944 -07 000000474 INF: FPGA: Recv ZPIEZORD 26287
17-03-18 06:12:56.954 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -9.2 V.
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30489 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30489 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30485 (-135.4 uncal um), Max = 30501 (-135.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30489, posNoise = 12, negNoise = 4
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: After move to -0.136196, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:12:56.954 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:12:57.004 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:12:57.004 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:12:57.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:57.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:57.004 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:57.004 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:57.004 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:12:57.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:57.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:12:57.004 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:12:57.004 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:57.014 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:12:57.014 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:12:57.014 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:12:57.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:12:57.064 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:12:57.094 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.989471,
17-03-18 06:12:57.364 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:12:57.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:12:57.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:12:57.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) start.
17-03-18 06:12:57.404 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:12:57.404 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:12:57.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:12:57.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:12:57.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:57.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:12:57.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:12:57.504 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:57.504 -07 000000502 INF: Autofocus start
17-03-18 06:12:57.504 -07 000000502 INF: MeasureProfile start
17-03-18 06:12:57.514 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:57.514 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:12:57.514 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:12:57.524 -07 000000502 INF: MeasureProfile done
17-03-18 06:12:57.524 -07 000000502 INF: X=-128  Z correction [um]=-0.6264838
17-03-18 06:12:57.524 -07 000000502 INF: Autofocus finished
17-03-18 06:12:57.714 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:12:57.714 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:12:57.714 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136191156001285. ----------
17-03-18 06:12:57.714 -07 000000610 INF: Cycle	146	Tile	13	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:12:57.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28128, sync = True, waitForSettling = True)
17-03-18 06:12:57.724 -07 000000610 INF: Z Motor: Moving to -0.128762 mm, started at -0.136191 mm, distance = 7.43 um
17-03-18 06:12:57.724 -07 000000610 INF: FPGA: Xmit ZDACW 28128\n [Z Motor]
17-03-18 06:12:57.724 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:12:57.734 -07 000000610 INF: FPGA: 'ZDACW 28128' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:12:57.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:57.734 -07 000000467 INF: FPGA: Recv ZDACR 28128
17-03-18 06:12:57.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:12:57.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.894 -07 000000447 INF: FPGA: Recv ZSGSRD 29330
17-03-18 06:12:57.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:12:57.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.904 -07 000000447 INF: FPGA: Recv ZSGSRD 29337
17-03-18 06:12:57.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.914 -07 000000447 INF: FPGA: Recv ZSGSRD 29332
17-03-18 06:12:57.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.924 -07 000000447 INF: FPGA: Recv ZSGSRD 29330
17-03-18 06:12:57.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.934 -07 000000447 INF: FPGA: Recv ZSGSRD 29334
17-03-18 06:12:57.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.944 -07 000000447 INF: FPGA: Recv ZSGSRD 29337
17-03-18 06:12:57.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.954 -07 000000447 INF: FPGA: Recv ZSGSRD 29334
17-03-18 06:12:57.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.964 -07 000000447 INF: FPGA: Recv ZSGSRD 29329
17-03-18 06:12:57.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.974 -07 000000461 INF: FPGA: Recv ZSGSRD 29336
17-03-18 06:12:57.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:12:57.984 -07 000000461 INF: FPGA: Recv ZSGSRD 29336
17-03-18 06:12:57.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:57.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:12:57.994 -07 000000461 INF: FPGA: Recv ZPIEZORD 24772
17-03-18 06:12:58.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:58.004 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -10.0 V.
17-03-18 06:12:58.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29334 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29334 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29329 (-128.0 uncal um), Max = 29337 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:12:58.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29334, posNoise = 3, negNoise = 5
17-03-18 06:12:58.004 -07 000000610 INF: Z Motor: After move to -0.128762, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:12:58.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:12:58.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:12:58.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:12:58.004 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:12:58.004 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:12:58.004 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:12:58.004 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:12:58.004 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:12:58.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:12:58.004 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:12:58.004 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:12:58.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:12:58.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:12:58.004 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:12:58.004 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:12:58.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:12:58.014 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:12:58.014 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:12:58.014 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:12:58.024 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:12:58.024 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:12:58.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28304 150\n [Camera]
17-03-18 06:12:58.224 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:12:58.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:12:58.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:12:58.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:58.674 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:58.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:12:58.684 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:12:58.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:12:58.684 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:58.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:58.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:12:58.874 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28304 839
17-03-18 06:12:59.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:12:59.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:12:59.084 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:12:59.084 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:59.084 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:12:59.084 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:12:59.084 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:59.084 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:12:59.084 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:12:59.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:59.094 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:12:59.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:12:59.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:12:59.234 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:12:59.234 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:12:59.234 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:12:59.244 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:12:59.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:12:59.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:12:59.244 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:12:59.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:12:59.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-18 06:12:59.434 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:12:59.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28304 150' command took 2 ms to send, 1400 ms to get response, and 1407 ms overall
17-03-18 06:12:59.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:12:59.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.128771190977551. ------
17-03-18 06:12:59.434 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:12:59.434 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13517 mm
17-03-18 06:12:59.434 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:12:59.434 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:12:59.434 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:12:59.434 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29528, sync = True, waitForSettling = False)
17-03-18 06:12:59.434 -07 000000438 INF: Z Motor: Moving to -0.135171 mm, started at -0.128771 mm, distance = -6.40 um
17-03-18 06:12:59.434 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:12:59.444 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:12:59.444 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:59.444 -07 000000569 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:12:59.454 -07 000000438 INF: FPGA: Xmit ZDACW 29528\n [Z Motor]
17-03-18 06:12:59.454 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:12:59.454 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:59.454 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:12:59.454 -07 000000626 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:12:59.454 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:12:59.464 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:12:59.464 -07 000000438 INF: FPGA: 'ZDACW 29528' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:12:59.474 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:12:59.484 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:12:59.484 -07 000000502 INF: FPGA: Recv ZDACR 29528
17-03-18 06:12:59.494 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:12:59.494 -07 000000438 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:12:59.634 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:12:59.634 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:12:59.634 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:59.634 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:12:59.634 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:12:59.634 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:12:59.634 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:12:59.644 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:12:59.644 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:12:59.644 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:12:59.664 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:12:59.664 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:12:59.844 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:12:59.844 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:12:59.904 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:12:59.904 -07 000000479 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:12:59.914 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:12:59.914 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:12:59.914 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:12:59.914 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:13:00.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:00.864 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:13:00.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:00.874 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:00.904 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:00.904 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:00.904 -07 000000626 INF: Y Motor: Moved to 70.6880 after 1464 ms (table move)
17-03-18 06:13:00.904 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135171 mm (DAC = 29528)
17-03-18 06:13:00.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30337
17-03-18 06:13:00.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:00.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30337
17-03-18 06:13:00.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30326
17-03-18 06:13:00.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.934 -07 000000474 INF: FPGA: Recv ZSGSRD 30323
17-03-18 06:13:00.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30325
17-03-18 06:13:00.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.954 -07 000000467 INF: FPGA: Recv ZSGSRD 30336
17-03-18 06:13:00.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30327
17-03-18 06:13:00.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.974 -07 000000474 INF: FPGA: Recv ZSGSRD 30333
17-03-18 06:13:00.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.984 -07 000000569 INF: FPGA: Recv ZSGSRD 30337
17-03-18 06:13:00.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:00.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:00.994 -07 000000569 INF: FPGA: Recv ZSGSRD 30329
17-03-18 06:13:01.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:01.004 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:01.004 -07 000000569 INF: FPGA: Recv ZPIEZORD 26112
17-03-18 06:13:01.014 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -9.3 V.
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30331 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30331 (-134.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30323 (-134.3 uncal um), Max = 30337 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30331, posNoise = 6, negNoise = 8
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: After move to -0.135171, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:13:01.014 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:13:01.064 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:13:01.064 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:01.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:01.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:01.064 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:01.064 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:01.064 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:01.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:01.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:01.064 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:01.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:01.074 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:01.084 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:13:01.084 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:13:01.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:01.134 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:13:01.434 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:13:01.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:13:01.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:01.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:13:01.474 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:01.474 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:01.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 06:13:01.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:13:01.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:01.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:13:01.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:13:01.574 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:01.574 -07 000000424 INF: Autofocus start
17-03-18 06:13:01.574 -07 000000424 INF: MeasureProfile start
17-03-18 06:13:01.574 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:01.584 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:01.584 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:01.594 -07 000000424 INF: MeasureProfile done
17-03-18 06:13:01.594 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:13:01.594 -07 000000424 INF: Autofocus finished
17-03-18 06:13:01.784 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:01.784 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:01.784 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135176130482887. ----------
17-03-18 06:13:01.794 -07 000000610 INF: Cycle	146	Tile	14	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:01.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28022, sync = True, waitForSettling = True)
17-03-18 06:13:01.794 -07 000000610 INF: Z Motor: Moving to -0.128276 mm, started at -0.135176 mm, distance = 6.90 um
17-03-18 06:13:01.794 -07 000000610 INF: FPGA: Xmit ZDACW 28022\n [Z Motor]
17-03-18 06:13:01.794 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:13:01.804 -07 000000610 INF: FPGA: 'ZDACW 28022' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:13:01.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:01.804 -07 000000424 INF: FPGA: Recv ZDACR 28022
17-03-18 06:13:01.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:01.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:01.834 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:01.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:01.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:01.964 -07 000000480 INF: FPGA: Recv ZSGSRD 29254
17-03-18 06:13:01.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:01.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:01.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29258
17-03-18 06:13:01.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:01.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:01.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29253
17-03-18 06:13:01.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:01.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:01.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29256
17-03-18 06:13:02.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.004 -07 000000480 INF: FPGA: Recv ZSGSRD 29258
17-03-18 06:13:02.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.014 -07 000000447 INF: FPGA: Recv ZSGSRD 29261
17-03-18 06:13:02.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.024 -07 000000447 INF: FPGA: Recv ZSGSRD 29262
17-03-18 06:13:02.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.034 -07 000000447 INF: FPGA: Recv ZSGSRD 29253
17-03-18 06:13:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.044 -07 000000447 INF: FPGA: Recv ZSGSRD 29254
17-03-18 06:13:02.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:02.054 -07 000000447 INF: FPGA: Recv ZSGSRD 29260
17-03-18 06:13:02.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:02.064 -07 000000447 INF: FPGA: Recv ZPIEZORD 24732
17-03-18 06:13:02.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:02.074 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.9 V.
17-03-18 06:13:02.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29257 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29257 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29253 (-127.5 uncal um), Max = 29262 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:13:02.074 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29257, posNoise = 5, negNoise = 4
17-03-18 06:13:02.074 -07 000000610 INF: Z Motor: After move to -0.128276, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:02.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:13:02.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:02.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:02.074 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:02.074 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:02.074 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:02.074 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:02.074 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:13:02.074 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:02.074 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:02.074 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:02.074 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:02.074 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:02.084 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:13:02.084 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:02.084 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:02.084 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:02.094 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:13:02.094 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:02.094 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:13:02.094 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:02.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28199 150\n [Camera]
17-03-18 06:13:02.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:02.464 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.993549,
17-03-18 06:13:02.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:02.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:02.754 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:02.754 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:02.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:02.754 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:02.754 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:02.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:13:02.754 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:02.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:13:02.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28199 839
17-03-18 06:13:03.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:03.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:13:03.134 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:13:03.134 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:03.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:13:03.134 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:13:03.134 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:03.134 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:13:03.134 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:13:03.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:03.144 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:13:03.304 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:13:03.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:13:03.304 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:03.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:13:03.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:13:03.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:03.324 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:03.324 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:13:03.324 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:03.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:13:03.494 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:03.494 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:03.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28199 150' command took 2 ms to send, 1399 ms to get response, and 1406 ms overall
17-03-18 06:13:03.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:13:03.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128276526642635. ------
17-03-18 06:13:03.504 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:03.504 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13505 mm
17-03-18 06:13:03.504 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:13:03.624 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:03.624 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 06:13:03.624 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:13:03.624 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29501, sync = True, waitForSettling = False)
17-03-18 06:13:03.624 -07 000000474 INF: Z Motor: Moving to -0.135047 mm, started at -0.128277 mm, distance = -6.77 um
17-03-18 06:13:03.624 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:13:03.624 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:13:03.634 -07 000000474 INF: FPGA: Xmit ZDACW 29501\n [Z Motor]
17-03-18 06:13:03.634 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:13:03.644 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:03.644 -07 000000474 INF: FPGA: 'ZDACW 29501' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:13:03.644 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:13:03.654 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:13:03.654 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:03.654 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:13:03.654 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:13:03.654 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:03.654 -07 000000585 INF: FPGA: Recv ZDACR 29501
17-03-18 06:13:03.664 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:03.664 -07 000000474 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:13:03.664 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:13:03.704 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:13:03.704 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:13:03.704 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:03.704 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:13:03.704 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:13:03.704 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:03.714 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:03.714 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:03.714 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:13:03.714 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:13:03.824 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:13:03.824 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 06:13:04.034 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:13:04.034 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:13:04.084 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:04.094 -07 000000479 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:13:04.094 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:13:04.094 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:04.094 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:13:04.094 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 06:13:05.044 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:05.044 -07 000000502 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:13:05.054 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:05.054 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:05.084 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:05.084 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:13:05.084 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1456 ms (table move)
17-03-18 06:13:05.084 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135047 mm (DAC = 29501)
17-03-18 06:13:05.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.084 -07 000000424 INF: FPGA: Recv ZSGSRD 30311
17-03-18 06:13:05.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:05.094 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.094 -07 000000501 INF: FPGA: Recv ZSGSRD 30317
17-03-18 06:13:05.104 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:05.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.104 -07 000000474 INF: FPGA: Recv ZSGSRD 30306
17-03-18 06:13:05.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.114 -07 000000447 INF: FPGA: Recv ZSGSRD 30321
17-03-18 06:13:05.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.124 -07 000000569 INF: FPGA: Recv ZSGSRD 30316
17-03-18 06:13:05.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.134 -07 000000629 INF: FPGA: Recv ZSGSRD 30306
17-03-18 06:13:05.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30314
17-03-18 06:13:05.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.154 -07 000000479 INF: FPGA: Recv ZSGSRD 30309
17-03-18 06:13:05.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.164 -07 000000502 INF: FPGA: Recv ZSGSRD 30315
17-03-18 06:13:05.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:05.174 -07 000000437 INF: FPGA: Recv ZSGSRD 30311
17-03-18 06:13:05.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.184 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:05.184 -07 000000501 INF: FPGA: Recv ZPIEZORD 26099
17-03-18 06:13:05.194 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.502 V. Piezo Error = -9.3 V.
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30313 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30306 (-134.2 uncal um), Max = 30321 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30313, posNoise = 8, negNoise = 7
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: After move to -0.135047, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:13:05.194 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:13:05.244 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 06:13:05.244 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:05.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:05.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:05.244 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:05.244 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:05.244 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:05.244 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:05.244 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:05.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:05.254 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:13:05.254 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:05.264 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:13:05.264 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:13:05.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:05.314 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:13:05.614 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:13:05.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:13:05.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:05.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:13:05.654 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:05.654 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:05.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:13:05.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:13:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:13:05.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:13:05.754 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:05.754 -07 000000467 INF: Autofocus start
17-03-18 06:13:05.754 -07 000000467 INF: MeasureProfile start
17-03-18 06:13:05.754 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:05.764 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:13:05.764 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:05.764 -07 000000467 INF: MeasureProfile done
17-03-18 06:13:05.764 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:13:05.764 -07 000000467 INF: Autofocus finished
17-03-18 06:13:05.964 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:05.964 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:05.964 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135060494664335. ----------
17-03-18 06:13:05.964 -07 000000610 INF: Cycle	146	Tile	15	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:05.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28009, sync = True, waitForSettling = True)
17-03-18 06:13:05.974 -07 000000610 INF: Z Motor: Moving to -0.128217 mm, started at -0.135060 mm, distance = 6.84 um
17-03-18 06:13:05.974 -07 000000610 INF: FPGA: Xmit ZDACW 28009\n [Z Motor]
17-03-18 06:13:05.974 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:13:05.984 -07 000000610 INF: FPGA: 'ZDACW 28009' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:05.984 -07 000000461 INF: FPGA: Recv ZDACR 28009
17-03-18 06:13:05.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:05.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.144 -07 000000502 INF: FPGA: Recv ZSGSRD 29247
17-03-18 06:13:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.154 -07 000000629 INF: FPGA: Recv ZSGSRD 29253
17-03-18 06:13:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.164 -07 000000585 INF: FPGA: Recv ZSGSRD 29253
17-03-18 06:13:06.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.174 -07 000000487 INF: FPGA: Recv ZSGSRD 29250
17-03-18 06:13:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.184 -07 000000474 INF: FPGA: Recv ZSGSRD 29245
17-03-18 06:13:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.194 -07 000000424 INF: FPGA: Recv ZSGSRD 29247
17-03-18 06:13:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.204 -07 000000467 INF: FPGA: Recv ZSGSRD 29254
17-03-18 06:13:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.214 -07 000000480 INF: FPGA: Recv ZSGSRD 29249
17-03-18 06:13:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.224 -07 000000487 INF: FPGA: Recv ZSGSRD 29250
17-03-18 06:13:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:06.234 -07 000000585 INF: FPGA: Recv ZSGSRD 29245
17-03-18 06:13:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:06.244 -07 000000569 INF: FPGA: Recv ZPIEZORD 24754
17-03-18 06:13:06.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:06.254 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -9.9 V.
17-03-18 06:13:06.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29249 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29250 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29245 (-127.4 uncal um), Max = 29254 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:13:06.254 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29249, posNoise = 5, negNoise = 4
17-03-18 06:13:06.254 -07 000000610 INF: Z Motor: After move to -0.128217, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:06.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:13:06.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:06.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:06.254 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:06.254 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:06.254 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:06.254 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:06.254 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:06.254 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:06.254 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:13:06.254 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:06.254 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:13:06.254 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:06.264 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:13:06.264 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:06.264 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:13:06.264 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:06.264 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:13:06.264 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:06.274 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:13:06.274 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:13:06.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28185 150\n [Camera]
17-03-18 06:13:06.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:06.834 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:06.924 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:06.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:06.934 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:06.934 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:06.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:06.934 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:06.934 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:06.934 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:13:06.934 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:06.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:13:07.124 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28185 839
17-03-18 06:13:07.274 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:07.314 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:13:07.314 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:13:07.314 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:07.314 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:13:07.314 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:13:07.314 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:07.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:07.314 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:13:07.314 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:07.324 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:13:07.484 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:13:07.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:13:07.494 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:07.494 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:07.494 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:13:07.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:13:07.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:13:07.494 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:07.494 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:07.494 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:13:07.684 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:07.684 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:07.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28185 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-18 06:13:07.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:13:07.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128225132945501. ------
17-03-18 06:13:07.684 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:07.684 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13459 mm
17-03-18 06:13:07.684 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:13:07.684 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:13:07.684 -07 000000461 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 06:13:07.684 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29401, sync = True, waitForSettling = False)
17-03-18 06:13:07.684 -07 000000585 INF: Z Motor: Moving to -0.134589 mm, started at -0.128225 mm, distance = -6.36 um
17-03-18 06:13:07.684 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:07.694 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:07.694 -07 000000585 INF: FPGA: Xmit ZDACW 29401\n [Z Motor]
17-03-18 06:13:07.694 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:13:07.704 -07 000000585 INF: FPGA: 'ZDACW 29401' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:07.704 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:13:07.714 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:07.714 -07 000000487 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:13:07.724 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:07.724 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:13:07.724 -07 000000461 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:07.724 -07 000000461 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:13:07.724 -07 000000461 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:13:07.724 -07 000000437 INF: FPGA: Recv ZDACR 29401
17-03-18 06:13:07.734 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:13:07.734 -07 000000585 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:13:07.734 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:13:07.834 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.981281,
17-03-18 06:13:07.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:13:07.874 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:13:07.874 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:07.874 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:07.874 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:13:07.874 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:13:07.874 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:07.884 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:07.884 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:13:07.884 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:13:07.904 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:13:07.904 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:13:08.114 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:13:08.114 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 06:13:08.184 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:08.184 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:13:08.194 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:13:08.194 -07 000000461 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:08.194 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 06:13:08.194 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-18 06:13:09.144 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:09.144 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:13:09.154 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.154 -07 000000461 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:09.184 -07 000000461 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:09.184 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:09.184 -07 000000461 INF: Y Motor: Moved to 72.3491 after 1493 ms (table move)
17-03-18 06:13:09.184 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134589 mm (DAC = 29401)
17-03-18 06:13:09.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.194 -07 000000502 INF: FPGA: Recv ZSGSRD 30241
17-03-18 06:13:09.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:13:09.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.194 -07 000000479 INF: FPGA: Recv ZSGSRD 30241
17-03-18 06:13:09.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:09.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.204 -07 000000461 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:13:09.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.214 -07 000000479 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:13:09.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.224 -07 000000461 INF: FPGA: Recv ZSGSRD 30240
17-03-18 06:13:09.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.234 -07 000000467 INF: FPGA: Recv ZSGSRD 30240
17-03-18 06:13:09.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.244 -07 000000461 INF: FPGA: Recv ZSGSRD 30239
17-03-18 06:13:09.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30236
17-03-18 06:13:09.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30240
17-03-18 06:13:09.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:09.274 -07 000000502 INF: FPGA: Recv ZSGSRD 30247
17-03-18 06:13:09.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.284 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:09.284 -07 000000479 INF: FPGA: Recv ZPIEZORD 26041
17-03-18 06:13:09.294 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.2 V.
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30239 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30240 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30235 (-133.8 uncal um), Max = 30247 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30239, posNoise = 8, negNoise = 4
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: After move to -0.134589, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: Settle wait time = 1498 ms, measure time = 102 ms (allowed 150 ms), total time = 1600 ms
17-03-18 06:13:09.294 -07 000000447 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:13:09.344 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1653 ms
17-03-18 06:13:09.344 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:09.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:09.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:09.344 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:09.344 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:09.344 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:13:09.344 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:09.344 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:09.344 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:09.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:09.354 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:09.354 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:13:09.354 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:13:09.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:09.404 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:13:09.704 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:13:09.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:13:09.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:09.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:13:09.744 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:09.744 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:09.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:13:09.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:13:09.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:09.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:13:09.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:13:09.844 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:09.844 -07 000000626 INF: Autofocus start
17-03-18 06:13:09.844 -07 000000626 INF: MeasureProfile start
17-03-18 06:13:09.844 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:09.854 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:13:09.854 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:09.854 -07 000000626 INF: MeasureProfile done
17-03-18 06:13:09.854 -07 000000626 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:13:09.854 -07 000000626 INF: Autofocus finished
17-03-18 06:13:10.054 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:10.054 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:10.064 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134585102965845. ----------
17-03-18 06:13:10.064 -07 000000610 INF: Cycle	146	Tile	16	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:10.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27942, sync = True, waitForSettling = True)
17-03-18 06:13:10.064 -07 000000610 INF: Z Motor: Moving to -0.127910 mm, started at -0.134585 mm, distance = 6.67 um
17-03-18 06:13:10.064 -07 000000610 INF: FPGA: Xmit ZDACW 27942\n [Z Motor]
17-03-18 06:13:10.074 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:13:10.074 -07 000000610 INF: FPGA: 'ZDACW 27942' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:13:10.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:10.074 -07 000000585 INF: FPGA: Recv ZDACR 27942
17-03-18 06:13:10.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:13:10.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.234 -07 000000447 INF: FPGA: Recv ZSGSRD 29200
17-03-18 06:13:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:10.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.244 -07 000000480 INF: FPGA: Recv ZSGSRD 29207
17-03-18 06:13:10.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.254 -07 000000447 INF: FPGA: Recv ZSGSRD 29197
17-03-18 06:13:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.264 -07 000000480 INF: FPGA: Recv ZSGSRD 29200
17-03-18 06:13:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.274 -07 000000480 INF: FPGA: Recv ZSGSRD 29199
17-03-18 06:13:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.284 -07 000000447 INF: FPGA: Recv ZSGSRD 29199
17-03-18 06:13:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.294 -07 000000480 INF: FPGA: Recv ZSGSRD 29206
17-03-18 06:13:10.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.304 -07 000000447 INF: FPGA: Recv ZSGSRD 29202
17-03-18 06:13:10.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.314 -07 000000447 INF: FPGA: Recv ZSGSRD 29201
17-03-18 06:13:10.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:10.324 -07 000000437 INF: FPGA: Recv ZSGSRD 29196
17-03-18 06:13:10.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:10.334 -07 000000467 INF: FPGA: Recv ZPIEZORD 24657
17-03-18 06:13:10.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:10.344 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.0 V.
17-03-18 06:13:10.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29201 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29200 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29196 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:13:10.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29201, posNoise = 6, negNoise = 5
17-03-18 06:13:10.344 -07 000000610 INF: Z Motor: After move to -0.127910, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:10.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 06:13:10.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:10.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:10.344 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:10.344 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:10.344 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:10.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:10.354 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:10.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:10.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:13:10.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:10.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:13:10.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:10.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:10.354 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:10.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:13:10.354 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:10.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:13:10.364 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:10.364 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:13:10.364 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:10.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28119 150\n [Camera]
17-03-18 06:13:10.564 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:11.024 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:11.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:11.024 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:11.024 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:11.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) start.
17-03-18 06:13:11.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:11.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:11.024 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:11.024 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:11.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:13:11.214 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28119 839
17-03-18 06:13:11.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:11.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2357840448, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:13:11.424 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:13:11.424 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:11.424 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:13:11.424 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:13:11.424 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:11.434 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:11.434 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:13:11.434 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:11.434 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:13:11.584 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:13:11.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:13:11.584 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:11.584 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:11.584 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:13:11.584 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:13:11.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:13:11.584 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:11.584 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:11.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:13:11.774 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:11.774 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:11.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28119 150' command took 2 ms to send, 1403 ms to get response, and 1407 ms overall
17-03-18 06:13:11.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:13:11.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.127916770762697. ------
17-03-18 06:13:11.774 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:11.774 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13441 mm
17-03-18 06:13:11.774 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:13:12.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 441 ms.
17-03-18 06:13:12.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 441 ms.
17-03-18 06:13:12.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:12.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 444 ms.
17-03-18 06:13:12.024 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 445 ms.
17-03-18 06:13:12.024 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:12.024 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:12.024 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:12.024 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 250 ms overall
17-03-18 06:13:12.024 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:12.034 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:13:12.034 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:12.034 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:13:12.034 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:13:12.034 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29363, sync = True, waitForSettling = False)
17-03-18 06:13:12.034 -07 000000467 INF: Z Motor: Moving to -0.134415 mm, started at -0.127917 mm, distance = -6.50 um
17-03-18 06:13:12.034 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:13:12.034 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 454 ms.
17-03-18 06:13:12.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 453 ms.
17-03-18 06:13:12.044 -07 000000467 INF: FPGA: Xmit ZDACW 29363\n [Z Motor]
17-03-18 06:13:12.044 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:13:12.054 -07 000000467 INF: FPGA: 'ZDACW 29363' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:13:12.054 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:12.054 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-18 06:13:12.064 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:13:12.064 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:12.064 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:12.064 -07 000000382 INF: FPGA: Recv ZDACR 29363
17-03-18 06:13:12.064 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:13:12.064 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-18 06:13:12.074 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:12.074 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:13:12.074 -07 000000467 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:13:12.234 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:13:12.234 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:13:12.444 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:13:12.444 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:13:12.494 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:12.504 -07 000000461 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:13:12.514 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:12.514 -07 000000569 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:12.514 -07 000000569 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:13:12.514 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.202 mm/sec
17-03-18 06:13:13.204 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.985358,
17-03-18 06:13:13.464 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:13.464 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:13:13.474 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:13.474 -07 000000569 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:13.504 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:13.504 -07 000000569 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:13.504 -07 000000569 INF: Y Motor: Moved to 73.1753 after 1469 ms (table move)
17-03-18 06:13:13.504 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134415 mm (DAC = 29363)
17-03-18 06:13:13.504 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.504 -07 000000461 INF: FPGA: Recv ZSGSRD 30216
17-03-18 06:13:13.514 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:13.524 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.524 -07 000000438 INF: FPGA: Recv ZSGSRD 30220
17-03-18 06:13:13.534 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:13:13.554 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.554 -07 000000585 INF: FPGA: Recv ZSGSRD 30211
17-03-18 06:13:13.564 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:13:13.574 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.574 -07 000000512 INF: FPGA: Recv ZSGSRD 30212
17-03-18 06:13:13.584 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:13.584 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30212
17-03-18 06:13:13.594 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.604 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.604 -07 000000585 INF: FPGA: Recv ZSGSRD 30219
17-03-18 06:13:13.614 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:13.614 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.614 -07 000000569 INF: FPGA: Recv ZSGSRD 30212
17-03-18 06:13:13.624 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.624 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.624 -07 000000512 INF: FPGA: Recv ZSGSRD 30210
17-03-18 06:13:13.634 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.634 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.634 -07 000000382 INF: FPGA: Recv ZSGSRD 30209
17-03-18 06:13:13.644 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.644 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:13.644 -07 000000585 INF: FPGA: Recv ZSGSRD 30216
17-03-18 06:13:13.654 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.654 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:13.654 -07 000000569 INF: FPGA: Recv ZPIEZORD 26021
17-03-18 06:13:13.664 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -9.2 V.
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30214 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30212 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30209 (-133.6 uncal um), Max = 30220 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30214, posNoise = 6, negNoise = 5
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: After move to -0.134415, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: Settle wait time = 1471 ms, measure time = 155 ms (allowed 150 ms), total time = 1626 ms
17-03-18 06:13:13.664 -07 000000479 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 06:13:13.664 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1882 ms
17-03-18 06:13:13.664 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:13.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:13.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:13.664 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:13.664 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:13.664 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:13.664 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:13.674 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:13.674 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:13.674 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:13.674 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:13.684 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:13:13.684 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:13:13.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:13.734 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:13:14.034 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:13:14.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:13:14.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:14.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:13:14.074 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:14.074 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:14.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:13:14.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:13:14.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:14.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:13:14.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:13:14.174 -07 000000480 INF: Autofocus start
17-03-18 06:13:14.174 -07 000000480 INF: MeasureProfile start
17-03-18 06:13:14.174 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:14.174 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:14.184 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:14.184 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:14.184 -07 000000480 INF: MeasureProfile done
17-03-18 06:13:14.184 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:13:14.184 -07 000000480 INF: Autofocus finished
17-03-18 06:13:14.384 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:14.384 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:14.384 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134424497662301. ----------
17-03-18 06:13:14.384 -07 000000610 INF: Cycle	146	Tile	17	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:14.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27887, sync = True, waitForSettling = True)
17-03-18 06:13:14.394 -07 000000610 INF: Z Motor: Moving to -0.127659 mm, started at -0.134424 mm, distance = 6.77 um
17-03-18 06:13:14.394 -07 000000610 INF: FPGA: Xmit ZDACW 27887\n [Z Motor]
17-03-18 06:13:14.394 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:13:14.404 -07 000000610 INF: FPGA: 'ZDACW 27887' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:13:14.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:14.404 -07 000000437 INF: FPGA: Recv ZDACR 27887
17-03-18 06:13:14.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.564 -07 000000626 INF: FPGA: Recv ZSGSRD 29165
17-03-18 06:13:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.574 -07 000000437 INF: FPGA: Recv ZSGSRD 29162
17-03-18 06:13:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29161
17-03-18 06:13:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.594 -07 000000479 INF: FPGA: Recv ZSGSRD 29161
17-03-18 06:13:14.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29159
17-03-18 06:13:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.614 -07 000000629 INF: FPGA: Recv ZSGSRD 29164
17-03-18 06:13:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.624 -07 000000626 INF: FPGA: Recv ZSGSRD 29166
17-03-18 06:13:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.634 -07 000000629 INF: FPGA: Recv ZSGSRD 29158
17-03-18 06:13:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29164
17-03-18 06:13:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:14.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29163
17-03-18 06:13:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:14.664 -07 000000626 INF: FPGA: Recv ZPIEZORD 24633
17-03-18 06:13:14.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:14.674 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.9 V.
17-03-18 06:13:14.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29162 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29158 (-126.9 uncal um), Max = 29166 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:13:14.674 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29162, posNoise = 4, negNoise = 4
17-03-18 06:13:14.674 -07 000000610 INF: Z Motor: After move to -0.127659, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:14.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:13:14.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:14.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:14.674 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:14.674 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:14.674 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:14.674 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:14.674 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:14.674 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:14.674 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:13:14.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:14.674 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:13:14.674 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:14.684 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:13:14.684 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:14.684 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:13:14.684 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:14.694 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:13:14.694 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:13:14.694 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:13:14.694 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:13:14.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28064 150\n [Camera]
17-03-18 06:13:14.894 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:15.344 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:15.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:15.344 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:15.354 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:15.354 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:15.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:13:15.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:15.354 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:15.364 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:15.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:13:15.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28064 839
17-03-18 06:13:15.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:15.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:13:15.734 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:13:15.734 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:15.734 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:13:15.734 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:13:15.734 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:15.734 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:15.734 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:13:15.744 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:15.754 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:13:15.904 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-18 06:13:15.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-18 06:13:15.914 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:15.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-18 06:13:15.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-18 06:13:15.914 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:15.914 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:15.914 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:13:15.914 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:15.914 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) start.
17-03-18 06:13:16.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:16.104 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:16.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28064 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-18 06:13:16.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:13:16.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127666226489168. ------
17-03-18 06:13:16.104 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:16.104 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13345 mm
17-03-18 06:13:16.104 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:13:16.234 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:16.234 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 06:13:16.234 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:13:16.234 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:13:16.234 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:13:16.234 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29153, sync = True, waitForSettling = False)
17-03-18 06:13:16.234 -07 000000606 INF: Z Motor: Moving to -0.133454 mm, started at -0.127666 mm, distance = -5.79 um
17-03-18 06:13:16.244 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:16.244 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-18 06:13:16.254 -07 000000606 INF: FPGA: Xmit ZDACW 29153\n [Z Motor]
17-03-18 06:13:16.254 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:13:16.254 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:16.254 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:13:16.254 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:13:16.254 -07 000000480 INF: Y Motor: Moving 1355 steps-35
17-03-18 06:13:16.264 -07 000000606 INF: FPGA: 'ZDACW 29153' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:13:16.264 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:13:16.274 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:16.274 -07 000000467 INF: FPGA: Recv ZDACR 29153
17-03-18 06:13:16.284 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:16.284 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:13:16.314 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:13:16.314 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:13:16.314 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:16.314 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2353435144, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:13:16.314 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:13:16.314 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:16.324 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:16.324 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:16.324 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:13:16.324 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:13:16.434 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:13:16.434 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:13:16.634 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:13:16.634 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:13:16.684 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:16.684 -07 000000629 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:13:16.694 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:16.694 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:16.694 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:13:16.694 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.847 mm, average velocity = 2.212 mm/sec
17-03-18 06:13:16.834 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:16.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:17.644 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:17.644 -07 000000626 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:13:17.654 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:17.654 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:17.674 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:17.674 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:17.674 -07 000000480 INF: Y Motor: Moved to 74.0073 after 1443 ms (table move)
17-03-18 06:13:17.674 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133454 mm (DAC = 29153)
17-03-18 06:13:17.674 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.684 -07 000000437 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:13:17.684 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:13:17.684 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30072
17-03-18 06:13:17.694 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:17.694 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.694 -07 000000467 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:13:17.704 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.704 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.704 -07 000000626 INF: FPGA: Recv ZSGSRD 30060
17-03-18 06:13:17.714 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.714 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.714 -07 000000606 INF: FPGA: Recv ZSGSRD 30064
17-03-18 06:13:17.724 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.724 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.724 -07 000000626 INF: FPGA: Recv ZSGSRD 30061
17-03-18 06:13:17.734 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.734 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.734 -07 000000585 INF: FPGA: Recv ZSGSRD 30060
17-03-18 06:13:17.744 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.744 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.744 -07 000000629 INF: FPGA: Recv ZSGSRD 30068
17-03-18 06:13:17.754 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.754 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.754 -07 000000606 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:13:17.764 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.764 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:17.764 -07 000000629 INF: FPGA: Recv ZSGSRD 30069
17-03-18 06:13:17.774 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.774 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:17.774 -07 000000467 INF: FPGA: Recv ZPIEZORD 25843
17-03-18 06:13:17.784 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.3 V.
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30065 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30064 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30060 (-132.6 uncal um), Max = 30072 (-132.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30065, posNoise = 7, negNoise = 5
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: After move to -0.133454, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-18 06:13:17.784 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:13:17.834 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 06:13:17.834 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:17.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:17.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:17.834 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:17.834 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:17.834 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:17.834 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:17.834 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:13:17.834 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:17.844 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:17.844 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:17.854 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:13:17.854 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:13:17.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:17.904 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:13:18.204 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:13:18.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:13:18.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:18.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:13:18.234 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:18.234 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:18.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:13:18.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:13:18.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:18.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:13:18.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:13:18.434 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:18.434 -07 000000585 INF: Autofocus start
17-03-18 06:13:18.434 -07 000000585 INF: MeasureProfile start
17-03-18 06:13:18.434 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:18.444 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:13:18.444 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:18.444 -07 000000585 INF: MeasureProfile done
17-03-18 06:13:18.444 -07 000000585 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:13:18.444 -07 000000585 INF: Autofocus finished
17-03-18 06:13:18.574 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 3.996267,
17-03-18 06:13:18.644 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:18.644 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:18.644 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133467290053178. ----------
17-03-18 06:13:18.654 -07 000000610 INF: Cycle	146	Tile	18	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:18.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27694, sync = True, waitForSettling = True)
17-03-18 06:13:18.654 -07 000000610 INF: Z Motor: Moving to -0.126775 mm, started at -0.133467 mm, distance = 6.69 um
17-03-18 06:13:18.654 -07 000000610 INF: FPGA: Xmit ZDACW 27694\n [Z Motor]
17-03-18 06:13:18.654 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:13:18.664 -07 000000610 INF: FPGA: 'ZDACW 27694' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:13:18.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:18.664 -07 000000437 INF: FPGA: Recv ZDACR 27694
17-03-18 06:13:18.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.824 -07 000000606 INF: FPGA: Recv ZSGSRD 29021
17-03-18 06:13:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:13:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.844 -07 000000479 INF: FPGA: Recv ZSGSRD 29025
17-03-18 06:13:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.854 -07 000000438 INF: FPGA: Recv ZSGSRD 29025
17-03-18 06:13:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.864 -07 000000479 INF: FPGA: Recv ZSGSRD 29020
17-03-18 06:13:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.874 -07 000000467 INF: FPGA: Recv ZSGSRD 29028
17-03-18 06:13:18.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.884 -07 000000585 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:13:18.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.894 -07 000000629 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:13:18.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:18.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29023
17-03-18 06:13:18.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:18.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:18.924 -07 000000626 INF: FPGA: Recv ZSGSRD 29029
17-03-18 06:13:18.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:18.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:18.954 -07 000000626 INF: FPGA: Recv ZPIEZORD 24453
17-03-18 06:13:18.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:13:18.964 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.226 V. Piezo Error = -10.0 V.
17-03-18 06:13:18.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29024 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29024 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29020 (-126.0 uncal um), Max = 29029 (-126.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:13:18.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29024, posNoise = 5, negNoise = 4
17-03-18 06:13:18.964 -07 000000610 INF: Z Motor: After move to -0.126775, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:18.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-18 06:13:18.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:18.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:18.964 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:18.964 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:18.964 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:18.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:18.964 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:18.964 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:18.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:18.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:18.964 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:13:18.964 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:18.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:13:18.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:18.974 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:13:18.974 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:18.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:13:18.974 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:13:18.984 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:13:18.984 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:13:18.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 27871 150\n [Camera]
17-03-18 06:13:19.184 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:19.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:19.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:19.634 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:19.644 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:19.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:19.644 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:19.644 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:19.644 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:13:19.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:19.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) start.
17-03-18 06:13:19.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27871 839
17-03-18 06:13:19.984 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:20.034 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:13:20.034 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:13:20.034 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:20.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2318012880, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:13:20.034 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:13:20.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:20.034 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:20.044 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:13:20.044 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:13:20.044 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:13:20.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1210
17-03-18 06:13:20.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1210
17-03-18 06:13:20.204 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:20.204 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:20.204 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:13:20.204 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1210
17-03-18 06:13:20.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1210
17-03-18 06:13:20.204 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:20.204 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:20.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:13:20.394 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:20.394 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:20.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 27871 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-18 06:13:20.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:13:20.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126779685213605. ------
17-03-18 06:13:20.394 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:20.394 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13327 mm
17-03-18 06:13:20.394 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:13:20.404 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:20.404 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:13:20.404 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:13:20.404 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29113, sync = True, waitForSettling = False)
17-03-18 06:13:20.404 -07 000000479 INF: Z Motor: Moving to -0.133271 mm, started at -0.126780 mm, distance = -6.49 um
17-03-18 06:13:20.404 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:13:20.404 -07 000000437 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 06:13:20.414 -07 000000479 INF: FPGA: Xmit ZDACW 29113\n [Z Motor]
17-03-18 06:13:20.414 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:13:20.424 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:20.424 -07 000000479 INF: FPGA: 'ZDACW 29113' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:13:20.424 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:13:20.434 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:13:20.434 -07 000000437 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:20.434 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:20.434 -07 000000626 INF: FPGA: Recv ZDACR 29113
17-03-18 06:13:20.434 -07 000000437 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:13:20.434 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:13:20.444 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:13:20.444 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:13:20.444 -07 000000479 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:13:20.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:13:20.594 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:13:20.594 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:20.594 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:13:20.594 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:13:20.594 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:20.604 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:13:20.604 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:13:20.604 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:13:20.604 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:13:20.604 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:13:20.604 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:13:20.814 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:13:20.814 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:13:20.854 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:20.854 -07 000000479 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:13:20.864 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:20.864 -07 000000437 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:20.864 -07 000000437 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:13:20.864 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 06:13:21.814 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:21.814 -07 000000585 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:13:21.824 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.824 -07 000000437 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:21.834 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 145. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:21.844 -07 000000437 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:21.844 -07 000000437 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:21.844 -07 000000437 INF: Y Motor: Moved to 74.8311 after 1440 ms (table move)
17-03-18 06:13:21.844 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133271 mm (DAC = 29113)
17-03-18 06:13:21.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.844 -07 000000585 INF: FPGA: Recv ZSGSRD 30037
17-03-18 06:13:21.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:13:21.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.854 -07 000000438 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:13:21.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.864 -07 000000479 INF: FPGA: Recv ZSGSRD 30034
17-03-18 06:13:21.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.874 -07 000000626 INF: FPGA: Recv ZSGSRD 30037
17-03-18 06:13:21.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.884 -07 000000501 INF: FPGA: Recv ZSGSRD 30041
17-03-18 06:13:21.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.894 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.894 -07 000000626 INF: FPGA: Recv ZSGSRD 30035
17-03-18 06:13:21.904 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.904 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.904 -07 000000479 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:13:21.914 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.914 -07 000000479 INF: FPGA: Recv ZSGSRD 30041
17-03-18 06:13:21.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.924 -07 000000626 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:13:21.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:21.934 -07 000000585 INF: FPGA: Recv ZSGSRD 30027
17-03-18 06:13:21.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.944 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:21.944 -07 000000501 INF: FPGA: Recv ZPIEZORD 25851
17-03-18 06:13:21.954 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.2 V.
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30035 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30034 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30027 (-132.4 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30035, posNoise = 6, negNoise = 8
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: After move to -0.133271, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-18 06:13:21.954 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:13:22.004 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 06:13:22.004 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:13:22.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:22.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:22.004 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:22.004 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:22.014 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:13:22.014 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:22.014 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:22.014 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:13:22.014 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:13:22.014 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:13:22.024 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:13:22.024 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:13:22.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:13:22.074 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:13:22.374 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:13:22.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:13:22.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:13:22.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) start.
17-03-18 06:13:22.404 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:13:22.414 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:13:22.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:13:22.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2388857408, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:13:22.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:22.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:13:22.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:13:22.514 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:13:22.514 -07 000000479 INF: Autofocus start
17-03-18 06:13:22.514 -07 000000479 INF: MeasureProfile start
17-03-18 06:13:22.514 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:13:22.524 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:13:22.524 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:13:22.524 -07 000000479 INF: MeasureProfile done
17-03-18 06:13:22.524 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:13:22.534 -07 000000479 INF: Autofocus finished
17-03-18 06:13:22.724 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:13:22.724 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:13:22.724 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133274563688925. ----------
17-03-18 06:13:22.724 -07 000000610 INF: Cycle	146	Tile	19	Exposure Settings		A	454	G	218	T	218	C	454
17-03-18 06:13:22.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27608, sync = True, waitForSettling = True)
17-03-18 06:13:22.734 -07 000000610 INF: Z Motor: Moving to -0.126381 mm, started at -0.133275 mm, distance = 6.89 um
17-03-18 06:13:22.734 -07 000000610 INF: FPGA: Xmit ZDACW 27608\n [Z Motor]
17-03-18 06:13:22.734 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:13:22.744 -07 000000610 INF: FPGA: 'ZDACW 27608' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:22.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:13:22.744 -07 000000606 INF: FPGA: Recv ZDACR 27608
17-03-18 06:13:22.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:13:22.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.904 -07 000000626 INF: FPGA: Recv ZSGSRD 28962
17-03-18 06:13:22.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.914 -07 000000437 INF: FPGA: Recv ZSGSRD 28969
17-03-18 06:13:22.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.924 -07 000000626 INF: FPGA: Recv ZSGSRD 28959
17-03-18 06:13:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.934 -07 000000437 INF: FPGA: Recv ZSGSRD 28962
17-03-18 06:13:22.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.944 -07 000000626 INF: FPGA: Recv ZSGSRD 28962
17-03-18 06:13:22.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.954 -07 000000606 INF: FPGA: Recv ZSGSRD 28966
17-03-18 06:13:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.964 -07 000000626 INF: FPGA: Recv ZSGSRD 28969
17-03-18 06:13:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.974 -07 000000629 INF: FPGA: Recv ZSGSRD 28967
17-03-18 06:13:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.984 -07 000000479 INF: FPGA: Recv ZSGSRD 28964
17-03-18 06:13:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:13:22.994 -07 000000585 INF: FPGA: Recv ZSGSRD 28960
17-03-18 06:13:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:23.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:13:23.004 -07 000000479 INF: FPGA: Recv ZPIEZORD 24416
17-03-18 06:13:23.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:23.014 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.213 V. Piezo Error = -10.0 V.
17-03-18 06:13:23.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28964 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28963 (-125.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28959 (-125.6 uncal um), Max = 28969 (-125.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:13:23.014 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28964, posNoise = 5, negNoise = 5
17-03-18 06:13:23.014 -07 000000610 INF: Z Motor: After move to -0.126381, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:13:23.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:13:23.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:13:23.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:13:23.014 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:13:23.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:13:23.014 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:13:23.014 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:13:23.014 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:13:23.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:13:23.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:13:23.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:13:23.014 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:13:23.024 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:13:23.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:13:23.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:13:23.024 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:13:23.024 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:13:23.034 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:13:23.034 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:13:23.034 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:13:23.034 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:13:23.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 27784 150\n [Camera]
17-03-18 06:13:23.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:13:23.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-18 06:13:23.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-18 06:13:23.694 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:23.694 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:23.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:13:23.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-18 06:13:23.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-18 06:13:23.694 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:23.694 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:23.694 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:13:23.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27784 839
17-03-18 06:13:23.944 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.012614,
17-03-18 06:13:24.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-18 06:13:24.094 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:13:24.094 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:13:24.094 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:24.094 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:24.094 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:13:24.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:13:24.094 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:13:24.094 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:24.104 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:24.104 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:13:24.254 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1210
17-03-18 06:13:24.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1210
17-03-18 06:13:24.254 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:13:24.254 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:13:24.254 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:13:24.264 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1210
17-03-18 06:13:24.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1210
17-03-18 06:13:24.264 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:13:24.264 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:13:24.264 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:13:24.444 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-18 06:13:24.444 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:13:24.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 27784 150' command took 2 ms to send, 1396 ms to get response, and 1407 ms overall
17-03-18 06:13:24.664 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:13:24.664 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:13:24.664 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:24.664 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:13:24.664 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:13:24.664 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:13:24.674 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:13:24.674 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:13:24.674 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:13:24.674 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:13:24.674 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:13:24.714 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:13:24.714 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:13:24.754 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 06:13:24.894 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 06:13:24.894 -07 000000610 INF: Imaging Cycle 146: ScanTilesCommand Cycle 146 time end. Duration was 177819 ms.
17-03-18 06:13:24.894 -07 000000610 INF: =================== Cycle #146 ===================
17-03-18 06:13:24.904 -07 000000610 INF: ===================  ===================
17-03-18 06:13:24.904 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:13:24.904 -07 000000626 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 06:13:24.914 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:24.914 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 06:13:24.914 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 146, FrontChillerTemperature: 4.012614, FrontChillerHeatSinkTemperature: 0.592816, AmbientTemperature: 18.60595, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.20588, GreenLEDSensorTemperature: 27.38171, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 06:13:25.034 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.