17-03-18 06:13:25.084 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:13:25.084 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:13:25.084 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 06:13:25.084 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:25.084 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:13:25.094 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:13:25.094 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:25.094 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:13:25.094 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:13:25.094 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:13:25.214 -07 000000585 INF: FPGA: Recv YMVTO 154378 872
17-03-18 06:13:25.214 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 116 ms overall
17-03-18 06:13:25.214 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:13:25.214 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:13:25.214 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 06:13:26.834 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:13:26.834 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1931, R2=2011, Total=3942. Warn if over 250 bubbles per interval.
17-03-18 06:13:28.214 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:13:28.214 -07 000000629 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:13:28.224 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:13:28.224 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:13:28.244 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:13:28.244 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:13:28.244 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3161 ms
17-03-18 06:13:28.254 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 60° ===================
17-03-18 06:13:28.254 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:13:28.254 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:13:28.254 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:13:28.264 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:13:28.264 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:13:28.264 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 06:13:28.274 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:13:28.274 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 60° ===================
17-03-18 06:13:28.274 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:13:28.274 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:13:28.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:28.304 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:13:28.304 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:13:28.304 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:13:28.604 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:13:28.624 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:13:28.624 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:13:28.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:28.694 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:13:28.694 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:13:28.794 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:13:28.794 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:13:28.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:28.824 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:13:28.824 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:13:28.824 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:13:28.954 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:13:28.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:29.304 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.011254,
17-03-18 06:13:31.834 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 06:13:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1934, R2=2013, Total=3947. Warn if over 250 bubbles per interval.
17-03-18 06:13:32.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:32.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:32.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:32.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:33.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:33.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:33.054 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:13:33.054 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:13:33.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:33.214 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:13:33.214 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:13:33.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:33.374 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:13:33.374 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:13:33.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:13:33.504 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:13:33.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:33.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:33.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:33.994 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:13:33.994 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:13:34.664 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.012614,
17-03-18 06:13:35.214 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:13:35.214 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:13:35.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:35.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:13:35.234 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:13:35.234 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:13:35.364 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:13:35.384 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:13:35.384 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:13:35.434 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:35.454 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:13:35.454 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:13:35.554 -07 000000610 INF: =================== Cycle #147, Pumping Reagent CMS (4) ===================
17-03-18 06:13:35.554 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:13:35.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:35.584 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:13:35.584 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:13:35.584 -07 000000610 INF: =================== Cycle #147, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:13:35.714 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:13:35.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:36.834 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 06:13:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1937, R2=2017, Total=3954. Warn if over 250 bubbles per interval.
17-03-18 06:13:37.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:37.224 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:37.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:37.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:37.674 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:13:37.674 -07 000000610 INF: =================== Cycle #147, Pumping Reagent CMS (4) ===================
17-03-18 06:13:37.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:37.834 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:13:37.834 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:13:37.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:37.994 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:13:37.994 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:13:37.994 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:13:38.124 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:13:38.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:38.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:38.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:38.614 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:13:38.614 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:13:39.834 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:13:39.834 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:13:39.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:39.854 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:13:39.854 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:13:39.854 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:13:40.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:13:40.024 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:13:40.024 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:13:40.024 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.004458,
17-03-18 06:13:40.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:13:40.094 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:13:40.094 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:13:40.194 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:13:40.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:13:40.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:40.224 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:13:40.224 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:13:40.224 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:13:40.354 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:13:40.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:41.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:41.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:41.294 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:13:41.294 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:13:41.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:41.454 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:13:41.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:13:41.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:41.614 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:13:41.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:13:41.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:13:41.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:13:41.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:41.834 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 5
17-03-18 06:13:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=5, R2=2, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1942, R2=2019, Total=3961. Warn if over 250 bubbles per interval.
17-03-18 06:13:42.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:42.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:42.234 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:13:42.234 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:13:42.234 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:13:42.234 -07 000000501 INF: WaitCommand(10000) start
17-03-18 06:13:42.234 -07 000000467 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:13:43.454 -07 000000467 INF: AsyncDelayTimer waited 1215ms
17-03-18 06:13:43.454 -07 000000467 INF: LanePump: Xmit /1?\r
17-03-18 06:13:43.484 -07 000000467 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:13:43.484 -07 000000467 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:13:43.614 -07 000000467 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:13:43.654 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:45.184 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:45.214 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:45.384 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.001704,
17-03-18 06:13:45.634 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:45.664 -07 000000467 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:13:45.664 -07 000000467 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 06:13:45.664 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:13:45.664 -07 000000467 INF: ===================  ===================
17-03-18 06:13:46.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:13:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2019, Total=3962. Warn if over 250 bubbles per interval.
17-03-18 06:13:50.744 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.978563,
17-03-18 06:13:51.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 06:13:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2021, Total=3964. Warn if over 250 bubbles per interval.
17-03-18 06:13:52.244 -07 000000501 INF: WaitCommand(10000) end
17-03-18 06:13:52.244 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:13:52.244 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:13:52.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:13:52.274 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:13:52.274 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:13:52.274 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:13:52.404 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:13:52.444 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:56.104 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.99219,
17-03-18 06:13:56.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:13:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:13:58.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:58.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:59.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:59.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:59.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:59.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:13:59.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:13:59.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:00.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:00.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:00.404 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:14:00.404 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:14:00.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:00.564 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:14:00.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:14:00.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:00.724 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:14:00.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:14:00.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:14:00.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:14:00.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:01.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:01.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:01.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:14:01.344 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:14:01.464 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.001704,
17-03-18 06:14:01.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:02.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:14:02.564 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:14:02.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:14:02.584 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:14:02.584 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:14:02.584 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:14:02.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:14:02.814 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:14:02.814 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:14:02.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:14:02.884 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:14:02.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:14:02.984 -07 000000610 INF: =================== Cycle #147, Pumping Reagent IMT (1) ===================
17-03-18 06:14:02.984 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:14:02.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:03.014 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:14:03.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:14:03.014 -07 000000610 INF: =================== Cycle #147, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:14:03.144 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:14:03.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:04.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:04.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:05.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:05.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:05.104 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:14:05.104 -07 000000610 INF: =================== Cycle #147, Pumping Reagent IMT (1) ===================
17-03-18 06:14:05.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:05.264 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:14:05.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:14:05.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:05.424 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:14:05.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:14:05.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:14:05.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:14:05.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:06.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:06.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:06.044 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:14:06.044 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:14:06.824 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.983999,
17-03-18 06:14:06.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:07.264 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:14:07.264 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:14:07.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:14:07.284 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:14:07.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:14:07.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:14:07.514 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:14:07.534 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:14:07.534 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:14:07.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:14:07.604 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:14:07.604 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:14:07.704 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:14:07.704 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:14:07.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:07.734 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:14:07.734 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:14:07.734 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:14:07.864 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:14:07.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:08.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:08.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:08.804 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:14:08.804 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:14:08.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:08.964 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:14:08.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:14:09.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:09.124 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:14:09.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:14:09.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:14:09.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:14:09.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:09.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:09.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:09.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:14:09.744 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:14:09.744 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 65° ===================
17-03-18 06:14:09.744 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:14:09.744 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:14:09.744 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:14:09.754 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:14:09.754 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:14:09.754 -07 000000479 INF: FPGA: Recv TEC2EN 
17-03-18 06:14:09.764 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:14:09.764 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 65° ===================
17-03-18 06:14:09.764 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:14:09.764 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:14:11.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:12.184 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.997626,
17-03-18 06:14:16.844 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:16.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:17.544 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.974486,
17-03-18 06:14:21.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:22.904 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.98264,
17-03-18 06:14:26.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:28.264 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.993549,
17-03-18 06:14:31.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:33.624 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.007176,
17-03-18 06:14:36.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:38.984 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.020806,
17-03-18 06:14:39.774 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:14:39.774 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:14:39.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:14:39.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:39.904 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:14:39.904 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:14:39.904 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:14:40.034 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:14:40.074 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:40.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:40.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:40.644 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:14:40.644 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:14:40.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:40.804 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:14:40.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:14:40.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:14:40.964 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:14:40.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:14:40.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:14:41.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:14:41.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:41.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:41.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:41.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:14:41.584 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:14:41.584 -07 000000581 INF: WaitCommand(30000) start
17-03-18 06:14:41.584 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:14:41.584 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:14:41.844 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:42.804 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:14:42.804 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 06:14:42.834 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:14:42.834 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:14:42.964 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:14:43.004 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:44.344 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.993549,
17-03-18 06:14:45.344 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:45.374 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:14:45.794 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 06:14:45.824 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:14:45.824 -07 000000626 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:14:45.824 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:14:45.824 -07 000000626 INF: ===================  ===================
17-03-18 06:14:46.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:49.704 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.994908,
17-03-18 06:14:51.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:14:55.814 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.009895,
17-03-18 06:14:56.844 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:14:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:15:01.174 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.018051,
17-03-18 06:15:01.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:15:06.534 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.999021,
17-03-18 06:15:06.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:15:11.594 -07 000000581 INF: WaitCommand(30000) end
17-03-18 06:15:11.594 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 22° ===================
17-03-18 06:15:11.594 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:15:11.594 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:15:11.594 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:15:11.604 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:15:11.604 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:15:11.604 -07 000000579 INF: FPGA: Recv TEC2EN 
17-03-18 06:15:11.614 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:11.614 -07 000000610 INF: =================== Cycle #147, Flow Cell Temp 22° ===================
17-03-18 06:15:11.614 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:15:11.614 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:15:11.614 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:15:11.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:11.654 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:15:11.654 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:15:11.654 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:15:11.784 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:15:11.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:11.844 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1943, R2=2022, Total=3965. Warn if over 250 bubbles per interval.
17-03-18 06:15:11.894 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.023489,
17-03-18 06:15:14.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:14.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:15.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:15.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:15.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:15.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:15.884 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:15:15.884 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:15:16.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:16.044 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:15:16.044 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:15:16.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:16.204 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:15:16.204 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:15:16.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:15:16.334 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:15:16.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:16.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:16.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:16.824 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:15:16.824 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:15:16.844 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:15:16.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2023, Total=3967. Warn if over 250 bubbles per interval.
17-03-18 06:15:17.254 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.041198,
17-03-18 06:15:18.044 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:15:18.044 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:15:18.044 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:18.064 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:15:18.064 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:15:18.064 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:15:18.214 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:15:18.234 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:15:18.234 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:15:18.284 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:18.304 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:15:18.304 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:15:18.404 -07 000000610 INF: =================== Cycle #147, Pumping Reagent USM (2) ===================
17-03-18 06:15:18.404 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:15:18.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:18.434 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:15:18.434 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:15:18.434 -07 000000610 INF: =================== Cycle #147, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:15:18.564 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:15:18.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:20.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:20.074 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:20.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:20.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:20.524 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 06:15:20.524 -07 000000610 INF: =================== Cycle #147, Pumping Reagent USM (2) ===================
17-03-18 06:15:20.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:20.684 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:15:20.684 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:15:20.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:20.844 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:15:20.844 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:15:20.844 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:15:20.974 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:15:21.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:21.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:21.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:21.464 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:15:21.464 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:15:21.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2023, Total=3967. Warn if over 250 bubbles per interval.
17-03-18 06:15:22.614 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.043918,
17-03-18 06:15:22.684 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:15:22.684 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:15:22.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:22.704 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:15:22.704 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:15:22.704 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:15:22.854 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:15:22.874 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:15:22.874 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:15:22.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:22.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:15:22.944 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:15:23.044 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:15:23.044 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:15:23.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:23.074 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:15:23.074 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:15:23.074 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:15:23.204 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:15:23.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:24.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:24.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:24.144 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:15:24.144 -07 000000610 INF: =================== Cycle #147, Pumping Reagent PR2 (3) ===================
17-03-18 06:15:24.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:24.304 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:15:24.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:15:24.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:15:24.464 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:15:24.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:15:24.464 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:15:24.594 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:15:24.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:25.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:25.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:25.084 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:15:25.084 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:15:25.084 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:15:25.084 -07 000000590 INF: WaitCommand(10000) start
17-03-18 06:15:25.084 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:15:26.304 -07 000000474 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:15:26.304 -07 000000474 INF: LanePump: Xmit /1?\r
17-03-18 06:15:26.334 -07 000000474 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:15:26.334 -07 000000474 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:15:26.464 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:15:26.504 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:26.844 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2023, Total=3967. Warn if over 250 bubbles per interval.
17-03-18 06:15:27.974 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.011254,
17-03-18 06:15:28.034 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:28.064 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:15:28.484 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 06:15:28.514 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:15:28.514 -07 000000474 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 06:15:28.514 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:15:28.514 -07 000000474 INF: ===================  ===================
17-03-18 06:15:31.844 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:15:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:33.334 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.994908,
17-03-18 06:15:35.094 -07 000000590 INF: WaitCommand(10000) end
17-03-18 06:15:35.094 -07 000000610 INF: =================== Cycle #147, Imaging ===================
17-03-18 06:15:35.094 -07 000000610 INF: Imaging Cycle 147: ScanTilesCommand Cycle 147 time start.
17-03-18 06:15:35.094 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:15:35.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:35.124 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:15:35.124 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:15:35.124 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:15:35.424 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:15:35.444 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:15:35.444 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:15:35.494 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:15:35.514 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:15:35.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:35.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:35.514 -07 000000611 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:15:35.514 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:35.514 -07 000000611 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:15:35.524 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-18 06:15:35.524 -07 000000611 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:15:35.524 -07 000000611 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:15:35.524 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23102
17-03-18 06:15:35.534 -07 000000611 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:35.534 -07 000000611 INF: RedLED: Using Red data: Photodiode ADC 23102 --> 7.4 mW (old method), or 204.8 mW (new method). Difference = 197.4 mW
17-03-18 06:15:35.534 -07 000000611 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:15:35.534 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:15:35.544 -07 000000611 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:35.544 -07 000000611 INF: RedLED: LED was on for 19 ms
17-03-18 06:15:35.544 -07 000000611 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-18 06:15:35.544 -07 000000611 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:15:35.544 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:35.544 -07 000000611 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:15:35.544 -07 000000618 INF: FPGA: Recv EXLED2ON 
17-03-18 06:15:35.554 -07 000000611 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:35.554 -07 000000611 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:15:35.554 -07 000000579 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 06:15:35.564 -07 000000611 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:35.564 -07 000000611 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 06:15:35.564 -07 000000611 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:15:35.564 -07 000000474 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:15:35.574 -07 000000611 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:35.574 -07 000000611 INF: GreenLED: LED was on for 19 ms
17-03-18 06:15:35.574 -07 000000611 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:15:35.574 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:15:35.574 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 06:15:35.584 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:15:35.584 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:15:36.084 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 06:15:36.084 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:15:36.084 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:15:36.084 -07 000000474 INF: FPGA: Recv EMCUR 
17-03-18 06:15:36.094 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:15:36.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:15:36.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126394232485099. ------
17-03-18 06:15:36.094 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:15:36.094 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17846 mm
17-03-18 06:15:36.094 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:36.094 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:15:36.094 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:15:36.094 -07 000000590 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:15:36.094 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38985, sync = True, waitForSettling = False)
17-03-18 06:15:36.094 -07 000000474 INF: Z Motor: Moving to -0.178462 mm, started at -0.126394 mm, distance = -52.07 um
17-03-18 06:15:36.104 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:15:36.104 -07 000000474 INF: FPGA: Xmit ZDACW 38985\n [Z Motor]
17-03-18 06:15:36.104 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:15:36.114 -07 000000474 INF: FPGA: 'ZDACW 38985' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:36.114 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:36.114 -07 000000424 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:15:36.124 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:15:36.124 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:15:36.124 -07 000000590 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:36.124 -07 000000590 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:15:36.124 -07 000000590 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:15:36.134 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:36.134 -07 000000561 INF: FPGA: Recv ZDACR 38985
17-03-18 06:15:36.144 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:36.144 -07 000000474 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:15:36.144 -07 000000590 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:15:36.324 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:15:36.324 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:15:36.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:37.824 -07 000000561 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 06:15:37.824 -07 000000590 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1706 ms overall
17-03-18 06:15:37.824 -07 000000590 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:15:37.824 -07 000000590 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:15:37.824 -07 000000590 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1707 ms, distance = 15.467 mm, average velocity = 9.061 mm/sec
17-03-18 06:15:38.694 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.993549,
17-03-18 06:15:40.674 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:40.674 -07 000000579 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:15:40.684 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:40.684 -07 000000590 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:40.714 -07 000000590 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:40.714 -07 000000590 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:15:40.714 -07 000000590 INF: Y Motor: Moved to 59.9097 after 4614 ms
17-03-18 06:15:40.714 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178462 mm (DAC = 38985)
17-03-18 06:15:40.714 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.724 -07 000000591 INF: FPGA: Recv ZSGSRD 37081
17-03-18 06:15:40.724 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:15:40.724 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.724 -07 000000581 INF: FPGA: Recv ZSGSRD 37078
17-03-18 06:15:40.734 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.734 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.734 -07 000000424 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:15:40.744 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.744 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.744 -07 000000626 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:15:40.754 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.754 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.754 -07 000000424 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:15:40.764 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.764 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.764 -07 000000561 INF: FPGA: Recv ZSGSRD 37071
17-03-18 06:15:40.774 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.774 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.774 -07 000000618 INF: FPGA: Recv ZSGSRD 37071
17-03-18 06:15:40.784 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.784 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.784 -07 000000590 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:15:40.794 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.794 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.794 -07 000000591 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:15:40.804 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.804 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:40.804 -07 000000626 INF: FPGA: Recv ZSGSRD 37075
17-03-18 06:15:40.814 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.814 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:40.814 -07 000000424 INF: FPGA: Recv ZPIEZORD 33272
17-03-18 06:15:40.824 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.4 V.
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37072 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37071 (-177.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37064 (-177.5 uncal um), Max = 37081 (-177.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37072, posNoise = 9, negNoise = 8
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: After move to -0.178462, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: Settle wait time = 4618 ms, measure time = 102 ms (allowed 150 ms), total time = 4720 ms
17-03-18 06:15:40.824 -07 000000611 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:15:40.874 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 06:15:40.874 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:40.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:40.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:40.874 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:40.874 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:15:40.874 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:40.874 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:40.884 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:40.884 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:15:40.904 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:15:40.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:15:40.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:15:40.904 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:15:40.924 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:15:40.924 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:15:40.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:15:40.964 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:15:41.264 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:15:41.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:15:41.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:15:41.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) start.
17-03-18 06:15:41.304 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:15:41.304 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:15:41.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:15:41.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:15:41.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:41.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:15:41.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:15:41.504 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:15:41.504 -07 000000581 INF: Image SNR check: start
17-03-18 06:15:41.504 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:15:41.514 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:15:41.514 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:15:41.514 -07 000000581 INF: Image SNR check: pass  [peak (Max-Min)=133.53]
17-03-18 06:15:41.514 -07 000000581 INF: Autofocus start
17-03-18 06:15:41.514 -07 000000581 INF: MeasureProfile start
17-03-18 06:15:41.524 -07 000000581 INF: MeasureProfile done
17-03-18 06:15:41.524 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:15:41.524 -07 000000581 INF: Autofocus finished
17-03-18 06:15:41.714 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:15:41.714 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:15:41.714 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178481744530497. ----------
17-03-18 06:15:41.714 -07 000000610 INF: Cycle	147	Tile	1	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:41.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = True)
17-03-18 06:15:41.724 -07 000000610 INF: Z Motor: Moving to -0.171664 mm, started at -0.178482 mm, distance = 6.82 um
17-03-18 06:15:41.724 -07 000000610 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-18 06:15:41.724 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:15:41.734 -07 000000610 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:41.734 -07 000000561 INF: FPGA: Recv ZDACR 37500
17-03-18 06:15:41.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:41.844 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.894 -07 000000591 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:15:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.904 -07 000000591 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:15:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.914 -07 000000590 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:15:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.924 -07 000000591 INF: FPGA: Recv ZSGSRD 36019
17-03-18 06:15:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.934 -07 000000424 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:15:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.944 -07 000000611 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:15:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.954 -07 000000590 INF: FPGA: Recv ZSGSRD 36013
17-03-18 06:15:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.964 -07 000000579 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:15:41.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.974 -07 000000590 INF: FPGA: Recv ZSGSRD 36020
17-03-18 06:15:41.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:41.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:41.984 -07 000000581 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:15:41.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:41.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:41.994 -07 000000424 INF: FPGA: Recv ZPIEZORD 31873
17-03-18 06:15:42.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:42.004 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 06:15:42.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36008 (-170.8 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:15:42.004 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 7, negNoise = 5
17-03-18 06:15:42.004 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:42.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:15:42.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:42.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:42.004 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:42.004 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:42.004 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:42.004 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:42.004 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:42.004 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:42.004 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:42.004 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:15:42.004 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:42.004 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:42.004 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:15:42.004 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:42.024 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:15:42.024 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:15:42.024 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:15:42.024 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:42.034 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:15:42.034 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:42.044 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:15:42.044 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 06:15:42.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37676 150\n [Camera]
17-03-18 06:15:42.244 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:15:42.704 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:15:42.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:15:42.704 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:42.704 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:15:42.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:15:42.704 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:42.714 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:42.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:15:42.714 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:42.714 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:15:42.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37676 840
17-03-18 06:15:43.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:15:43.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:15:43.104 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:15:43.104 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:43.114 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:15:43.114 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:15:43.114 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:43.114 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:43.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:15:43.114 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:43.124 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:15:43.264 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:15:43.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:15:43.264 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:43.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:15:43.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:15:43.384 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:43.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:15:43.384 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:43.384 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:43.384 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:15:43.454 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:15:43.454 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:15:43.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37676 150' command took 2 ms to send, 1397 ms to get response, and 1409 ms overall
17-03-18 06:15:43.454 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171862
17-03-18 06:15:43.454 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17186 mm
17-03-18 06:15:43.454 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:43.464 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:15:43.464 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:15:43.464 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:43.464 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37543, sync = True, waitForSettling = False)
17-03-18 06:15:43.464 -07 000000618 INF: Z Motor: Moving to -0.171861 mm, started at -0.171679 mm, distance = -0.18 um
17-03-18 06:15:43.464 -07 000000626 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:15:43.474 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:15:43.474 -07 000000590 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:43.474 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:15:43.474 -07 000000590 INF: Y Motor: Moving 1333 steps0
17-03-18 06:15:43.474 -07 000000618 INF: FPGA: Xmit ZDACW 37543\n [Z Motor]
17-03-18 06:15:43.474 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:15:43.484 -07 000000618 INF: FPGA: 'ZDACW 37543' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:15:43.484 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:15:43.494 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:43.494 -07 000000579 INF: FPGA: Recv ZDACR 37543
17-03-18 06:15:43.504 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:15:43.504 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:15:43.774 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:15:43.774 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:15:43.774 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:43.784 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:15:43.784 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:15:43.784 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:43.784 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:15:43.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 06:15:43.784 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:15:43.794 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:15:43.854 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:15:43.854 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:15:43.894 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:43.904 -07 000000626 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:15:43.904 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:15:43.904 -07 000000590 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:43.904 -07 000000590 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:15:43.904 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.833 mm, average velocity = 2.152 mm/sec
17-03-18 06:15:44.594 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.997626,
17-03-18 06:15:44.854 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:44.854 -07 000000611 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:15:44.864 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:44.864 -07 000000590 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:44.894 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:44.894 -07 000000590 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:15:44.894 -07 000000590 INF: Y Motor: Moved to 60.7319 after 1432 ms (table move)
17-03-18 06:15:44.894 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171861 mm (DAC = 37543)
17-03-18 06:15:44.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.904 -07 000000581 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:15:44.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:15:44.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.904 -07 000000424 INF: FPGA: Recv ZSGSRD 36048
17-03-18 06:15:44.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:44.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.914 -07 000000581 INF: FPGA: Recv ZSGSRD 36039
17-03-18 06:15:44.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:44.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.934 -07 000000424 INF: FPGA: Recv ZSGSRD 36043
17-03-18 06:15:44.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:15:44.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.964 -07 000000424 INF: FPGA: Recv ZSGSRD 36043
17-03-18 06:15:44.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:44.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36043
17-03-18 06:15:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.004 -07 000000424 INF: FPGA: Recv ZSGSRD 36039
17-03-18 06:15:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.014 -07 000000590 INF: FPGA: Recv ZSGSRD 36038
17-03-18 06:15:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.024 -07 000000611 INF: FPGA: Recv ZSGSRD 36038
17-03-18 06:15:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.034 -07 000000590 INF: FPGA: Recv ZSGSRD 36047
17-03-18 06:15:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:45.044 -07 000000618 INF: FPGA: Recv ZPIEZORD 31895
17-03-18 06:15:45.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.2 V.
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36042 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36041 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36037 (-171.0 uncal um), Max = 36048 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36042, posNoise = 6, negNoise = 5
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: After move to -0.171861, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 153 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-18 06:15:45.054 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 06:15:45.054 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:45.054 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.171864806024483. ----------
17-03-18 06:15:45.054 -07 000000610 INF: Cycle	147	Tile	2	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37366, sync = True, waitForSettling = True)
17-03-18 06:15:45.054 -07 000000610 INF: Z Motor: Moving to -0.171051 mm, started at -0.171865 mm, distance = 0.81 um
17-03-18 06:15:45.054 -07 000000610 INF: FPGA: Xmit ZDACW 37366\n [Z Motor]
17-03-18 06:15:45.054 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:15:45.064 -07 000000610 INF: FPGA: 'ZDACW 37366' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:15:45.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:45.064 -07 000000561 INF: FPGA: Recv ZDACR 37366
17-03-18 06:15:45.074 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:45.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.224 -07 000000626 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:15:45.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:45.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.234 -07 000000581 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:15:45.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.244 -07 000000618 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:15:45.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:15:45.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.264 -07 000000424 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:15:45.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.274 -07 000000611 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:15:45.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.284 -07 000000424 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:15:45.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:15:45.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.304 -07 000000611 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:15:45.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:45.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:15:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:45.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 31764
17-03-18 06:15:45.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:45.334 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.2 V.
17-03-18 06:15:45.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35917 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:15:45.334 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 8, negNoise = 7
17-03-18 06:15:45.334 -07 000000610 INF: Z Motor: After move to -0.171051, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:45.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:15:45.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:45.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:45.334 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:45.334 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:45.334 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:45.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:45.334 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:45.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:45.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:45.334 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:45.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:45.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:45.344 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:15:45.344 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:45.344 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:15:45.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:45.354 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:15:45.354 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:15:45.354 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:15:45.354 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:15:45.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37543 150\n [Camera]
17-03-18 06:15:45.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:15:46.014 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:15:46.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:15:46.014 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:46.014 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:46.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:15:46.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:15:46.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:15:46.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:46.014 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:46.014 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:15:46.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37543 840
17-03-18 06:15:46.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:15:46.414 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:15:46.414 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:15:46.414 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:46.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:15:46.414 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:15:46.414 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:46.424 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:46.424 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:15:46.424 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:46.424 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:15:46.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:15:46.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:15:46.574 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:46.574 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:46.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:15:46.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:15:46.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:15:46.584 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:46.584 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:46.584 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:15:46.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:15:46.764 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:15:46.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37543 150' command took 2 ms to send, 1398 ms to get response, and 1409 ms overall
17-03-18 06:15:46.774 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171899
17-03-18 06:15:46.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17190 mm
17-03-18 06:15:46.774 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:46.774 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:15:46.774 -07 000000579 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:15:46.774 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:46.774 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37551, sync = True, waitForSettling = False)
17-03-18 06:15:46.774 -07 000000626 INF: Z Motor: Moving to -0.171897 mm, started at -0.171068 mm, distance = -0.83 um
17-03-18 06:15:46.774 -07 000000591 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:15:46.784 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:15:46.784 -07 000000579 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:46.784 -07 000000579 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:15:46.784 -07 000000579 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:15:46.784 -07 000000626 INF: FPGA: Xmit ZDACW 37551\n [Z Motor]
17-03-18 06:15:46.784 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:15:46.794 -07 000000626 INF: FPGA: 'ZDACW 37551' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:15:46.794 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:15:46.804 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:46.804 -07 000000424 INF: FPGA: Recv ZDACR 37551
17-03-18 06:15:46.814 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:15:46.814 -07 000000626 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:15:46.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:46.984 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:15:46.984 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:15:46.984 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:46.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:15:46.984 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:15:46.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:46.984 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:15:46.984 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:15:46.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:15:46.994 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:15:47.164 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:15:47.164 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:15:47.214 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:47.224 -07 000000626 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:15:47.224 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:15:47.224 -07 000000579 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:47.224 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:15:47.224 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-18 06:15:48.174 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:48.174 -07 000000618 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:15:48.184 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:48.184 -07 000000579 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:48.214 -07 000000579 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:48.214 -07 000000579 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:15:48.214 -07 000000579 INF: Y Motor: Moved to 61.5625 after 1438 ms (table move)
17-03-18 06:15:48.214 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171897 mm (DAC = 37551)
17-03-18 06:15:48.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.214 -07 000000424 INF: FPGA: Recv ZSGSRD 36047
17-03-18 06:15:48.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:15:48.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.224 -07 000000590 INF: FPGA: Recv ZSGSRD 36045
17-03-18 06:15:48.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.234 -07 000000591 INF: FPGA: Recv ZSGSRD 36051
17-03-18 06:15:48.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.244 -07 000000590 INF: FPGA: Recv ZSGSRD 36052
17-03-18 06:15:48.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.254 -07 000000591 INF: FPGA: Recv ZSGSRD 36048
17-03-18 06:15:48.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.264 -07 000000618 INF: FPGA: Recv ZSGSRD 36052
17-03-18 06:15:48.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.274 -07 000000579 INF: FPGA: Recv ZSGSRD 36051
17-03-18 06:15:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.284 -07 000000611 INF: FPGA: Recv ZSGSRD 36044
17-03-18 06:15:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.294 -07 000000591 INF: FPGA: Recv ZSGSRD 36041
17-03-18 06:15:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.304 -07 000000424 INF: FPGA: Recv ZSGSRD 36052
17-03-18 06:15:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:48.314 -07 000000591 INF: FPGA: Recv ZPIEZORD 31941
17-03-18 06:15:48.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -9.1 V.
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36048 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36050 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36041 (-171.0 uncal um), Max = 36052 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36048, posNoise = 4, negNoise = 7
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: After move to -0.171897, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-18 06:15:48.324 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:15:48.374 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 06:15:48.374 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:48.374 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171903351297334. ----------
17-03-18 06:15:48.374 -07 000000610 INF: Cycle	147	Tile	3	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:48.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37375, sync = True, waitForSettling = True)
17-03-18 06:15:48.374 -07 000000610 INF: Z Motor: Moving to -0.171092 mm, started at -0.171903 mm, distance = 0.81 um
17-03-18 06:15:48.374 -07 000000610 INF: FPGA: Xmit ZDACW 37375\n [Z Motor]
17-03-18 06:15:48.374 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:15:48.384 -07 000000610 INF: FPGA: 'ZDACW 37375' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:15:48.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:48.384 -07 000000591 INF: FPGA: Recv ZDACR 37375
17-03-18 06:15:48.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:48.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:15:48.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:48.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.554 -07 000000579 INF: FPGA: Recv ZSGSRD 35927
17-03-18 06:15:48.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35927
17-03-18 06:15:48.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.574 -07 000000618 INF: FPGA: Recv ZSGSRD 35923
17-03-18 06:15:48.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.584 -07 000000424 INF: FPGA: Recv ZSGSRD 35928
17-03-18 06:15:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.594 -07 000000618 INF: FPGA: Recv ZSGSRD 35924
17-03-18 06:15:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.604 -07 000000424 INF: FPGA: Recv ZSGSRD 35924
17-03-18 06:15:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.614 -07 000000590 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:15:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.624 -07 000000626 INF: FPGA: Recv ZSGSRD 35920
17-03-18 06:15:48.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:48.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:15:48.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:48.644 -07 000000626 INF: FPGA: Recv ZPIEZORD 31763
17-03-18 06:15:48.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:48.654 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 06:15:48.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35924 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35924 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35920 (-170.2 uncal um), Max = 35928 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:15:48.654 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35924, posNoise = 4, negNoise = 4
17-03-18 06:15:48.654 -07 000000610 INF: Z Motor: After move to -0.171092, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:48.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:15:48.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:48.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:48.654 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:48.654 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:48.654 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:48.654 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:48.654 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:48.654 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:48.654 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:48.654 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:48.654 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:48.654 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:48.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:15:48.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:48.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:15:48.664 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:48.674 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:15:48.674 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:15:48.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:15:48.674 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:15:48.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37551 150\n [Camera]
17-03-18 06:15:48.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:15:49.334 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:15:49.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:15:49.334 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:49.334 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:49.334 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:15:49.334 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:15:49.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:15:49.334 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:49.464 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:49.464 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:15:49.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 840
17-03-18 06:15:49.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:15:49.714 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:15:49.714 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:15:49.714 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:49.724 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:15:49.724 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:15:49.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:15:49.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:15:49.834 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:49.834 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:15:49.844 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 06:15:49.894 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:15:49.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:15:49.894 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:49.894 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:49.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:15:49.904 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:15:49.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:15:49.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:49.904 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:49.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:15:49.964 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.979922,
17-03-18 06:15:50.084 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:15:50.094 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:15:50.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37551 150' command took 2 ms to send, 1400 ms to get response, and 1408 ms overall
17-03-18 06:15:50.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:15:50.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171106748991756. ------
17-03-18 06:15:50.094 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:15:50.094 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17740 mm
17-03-18 06:15:50.094 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:50.104 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:15:50.104 -07 000000611 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:15:50.104 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38754, sync = True, waitForSettling = False)
17-03-18 06:15:50.104 -07 000000618 INF: Z Motor: Moving to -0.177404 mm, started at -0.171107 mm, distance = -6.30 um
17-03-18 06:15:50.104 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:15:50.104 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:15:50.104 -07 000000618 INF: FPGA: Xmit ZDACW 38754\n [Z Motor]
17-03-18 06:15:50.104 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:15:50.114 -07 000000618 INF: FPGA: 'ZDACW 38754' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:50.114 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:15:50.124 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:50.124 -07 000000581 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:15:50.134 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:50.134 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:15:50.134 -07 000000611 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:50.134 -07 000000611 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:15:50.134 -07 000000611 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:15:50.134 -07 000000579 INF: FPGA: Recv ZDACR 38754
17-03-18 06:15:50.144 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:50.144 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:15:50.144 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:15:50.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:15:50.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:15:50.284 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:50.284 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:15:50.284 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:15:50.284 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:50.284 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:50.284 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:15:50.294 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:50.294 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:15:50.314 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:15:50.314 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 211 ms overall
17-03-18 06:15:50.514 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:15:50.514 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:15:50.574 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:50.574 -07 000000606 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:15:50.584 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:50.584 -07 000000611 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:50.584 -07 000000611 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:15:50.584 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-18 06:15:51.534 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:51.534 -07 000000561 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:15:51.544 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:51.544 -07 000000611 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:51.574 -07 000000611 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:51.574 -07 000000611 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:15:51.574 -07 000000611 INF: Y Motor: Moved to 62.3940 after 1470 ms (table move)
17-03-18 06:15:51.574 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177404 mm (DAC = 38754)
17-03-18 06:15:51.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.574 -07 000000561 INF: FPGA: Recv ZSGSRD 36912
17-03-18 06:15:51.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:15:51.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.584 -07 000000561 INF: FPGA: Recv ZSGSRD 36901
17-03-18 06:15:51.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.594 -07 000000611 INF: FPGA: Recv ZSGSRD 36900
17-03-18 06:15:51.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.604 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.604 -07 000000606 INF: FPGA: Recv ZSGSRD 36896
17-03-18 06:15:51.614 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.614 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.614 -07 000000590 INF: FPGA: Recv ZSGSRD 36906
17-03-18 06:15:51.624 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.624 -07 000000474 INF: FPGA: Recv ZSGSRD 36909
17-03-18 06:15:51.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.634 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.634 -07 000000561 INF: FPGA: Recv ZSGSRD 36910
17-03-18 06:15:51.644 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.644 -07 000000611 INF: FPGA: Recv ZSGSRD 36907
17-03-18 06:15:51.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.654 -07 000000590 INF: FPGA: Recv ZSGSRD 36908
17-03-18 06:15:51.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:51.664 -07 000000474 INF: FPGA: Recv ZSGSRD 36909
17-03-18 06:15:51.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:51.674 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:51.674 -07 000000611 INF: FPGA: Recv ZPIEZORD 33111
17-03-18 06:15:51.684 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.4 V.
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36906 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36908 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36896 (-176.5 uncal um), Max = 36912 (-176.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36906, posNoise = 6, negNoise = 10
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: After move to -0.177404, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: Settle wait time = 1473 ms, measure time = 106 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:15:51.684 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:15:51.734 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:15:51.734 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:51.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:51.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:51.734 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:51.734 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:51.734 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:15:51.734 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:51.734 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:51.734 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:15:51.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:15:51.744 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:15:51.754 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:15:51.754 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:15:51.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:15:51.804 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:15:51.844 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:52.104 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:15:52.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:15:52.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:15:52.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575383840, 0x0, 559484976) start.
17-03-18 06:15:52.144 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:15:52.144 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:15:52.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 06:15:52.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575383840, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:15:52.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:52.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:15:52.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:15:52.244 -07 000000611 INF: Autofocus start
17-03-18 06:15:52.244 -07 000000611 INF: MeasureProfile start
17-03-18 06:15:52.244 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:15:52.244 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:15:52.254 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:15:52.254 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:15:52.254 -07 000000611 INF: MeasureProfile done
17-03-18 06:15:52.254 -07 000000611 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:15:52.254 -07 000000611 INF: Autofocus finished
17-03-18 06:15:52.454 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:15:52.454 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 06:15:52.454 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.177415325314965. ----------
17-03-18 06:15:52.464 -07 000000610 INF: Cycle	147	Tile	4	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:52.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37251, sync = True, waitForSettling = True)
17-03-18 06:15:52.464 -07 000000610 INF: Z Motor: Moving to -0.170524 mm, started at -0.177415 mm, distance = 6.89 um
17-03-18 06:15:52.464 -07 000000610 INF: FPGA: Xmit ZDACW 37251\n [Z Motor]
17-03-18 06:15:52.464 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:15:52.474 -07 000000610 INF: FPGA: 'ZDACW 37251' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:15:52.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:52.474 -07 000000474 INF: FPGA: Recv ZDACR 37251
17-03-18 06:15:52.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:52.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.634 -07 000000424 INF: FPGA: Recv ZSGSRD 35836
17-03-18 06:15:52.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:52.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35837
17-03-18 06:15:52.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:52.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:15:52.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35832
17-03-18 06:15:52.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35836
17-03-18 06:15:52.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.684 -07 000000591 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:15:52.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35839
17-03-18 06:15:52.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.704 -07 000000611 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:15:52.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35838
17-03-18 06:15:52.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:52.724 -07 000000591 INF: FPGA: Recv ZSGSRD 35835
17-03-18 06:15:52.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:52.734 -07 000000424 INF: FPGA: Recv ZPIEZORD 31642
17-03-18 06:15:52.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:52.744 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-18 06:15:52.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35836 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35836 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:15:52.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35836, posNoise = 4, negNoise = 5
17-03-18 06:15:52.744 -07 000000610 INF: Z Motor: After move to -0.170524, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:52.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:15:52.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:52.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:52.744 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:52.744 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:52.744 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:52.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:52.744 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:52.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:52.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:52.744 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:52.744 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:52.744 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:52.754 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:15:52.754 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:52.754 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:15:52.754 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:52.764 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:15:52.764 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:15:52.764 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:15:52.764 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:15:52.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37427 150\n [Camera]
17-03-18 06:15:52.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:15:53.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:15:53.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:15:53.424 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:53.424 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:53.424 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:15:53.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:15:53.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:15:53.424 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:53.424 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:53.424 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:15:53.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37427 840
17-03-18 06:15:53.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:15:53.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:15:53.804 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:15:53.804 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:53.804 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:15:53.804 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:15:53.804 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:53.804 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:53.804 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:15:53.804 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:53.814 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:15:53.984 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:15:53.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:15:53.984 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:54.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:15:54.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:15:54.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:54.124 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:54.124 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:15:54.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:54.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:15:54.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:15:54.174 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:15:54.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37427 150' command took 2 ms to send, 1397 ms to get response, and 1409 ms overall
17-03-18 06:15:54.184 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170975
17-03-18 06:15:54.184 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17097 mm
17-03-18 06:15:54.184 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:54.184 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37349, sync = True, waitForSettling = False)
17-03-18 06:15:54.184 -07 000000591 INF: Z Motor: Moving to -0.170973 mm, started at -0.170541 mm, distance = -0.43 um
17-03-18 06:15:54.184 -07 000000591 INF: FPGA: Xmit ZDACW 37349\n [Z Motor]
17-03-18 06:15:54.184 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:15:54.184 -07 000000474 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:15:54.184 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:15:54.194 -07 000000591 INF: FPGA: 'ZDACW 37349' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:15:54.194 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:54.194 -07 000000581 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:15:54.204 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:15:54.204 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:54.204 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:54.204 -07 000000561 INF: FPGA: Recv ZDACR 37349
17-03-18 06:15:54.204 -07 000000474 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:15:54.204 -07 000000474 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:15:54.214 -07 000000591 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:15:54.214 -07 000000591 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:15:54.214 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:15:54.504 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:15:54.504 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:15:54.504 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:54.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:15:54.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:15:54.514 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:54.514 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:15:54.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:15:54.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 06:15:54.524 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:15:54.584 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:15:54.584 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:15:54.654 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:54.654 -07 000000606 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:15:54.664 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:54.664 -07 000000474 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:54.664 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:15:54.664 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-18 06:15:55.334 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.000345,
17-03-18 06:15:55.614 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:55.614 -07 000000611 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:15:55.624 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:55.624 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:55.654 -07 000000474 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:55.654 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:15:55.654 -07 000000474 INF: Y Motor: Moved to 63.2227 after 1466 ms (table move)
17-03-18 06:15:55.654 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170973 mm (DAC = 37349)
17-03-18 06:15:55.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.654 -07 000000611 INF: FPGA: Recv ZSGSRD 35900
17-03-18 06:15:55.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:15:55.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.674 -07 000000606 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:15:55.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:15:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:15:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.714 -07 000000618 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:15:55.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:55.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:15:55.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.754 -07 000000581 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:15:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:15:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.764 -07 000000581 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:15:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.774 -07 000000611 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:15:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.784 -07 000000626 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:15:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.794 -07 000000626 INF: FPGA: Recv ZSGSRD 35899
17-03-18 06:15:55.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:55.804 -07 000000626 INF: FPGA: Recv ZPIEZORD 31742
17-03-18 06:15:55.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35899 (-170.1 uncal um), Max = 35911 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 6, negNoise = 6
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: After move to -0.170973, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 155 ms (allowed 150 ms), total time = 1624 ms
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 06:15:55.814 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:15:55.814 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:55.814 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.170984688961062. ----------
17-03-18 06:15:55.814 -07 000000610 INF: Cycle	147	Tile	5	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37173, sync = True, waitForSettling = True)
17-03-18 06:15:55.814 -07 000000610 INF: Z Motor: Moving to -0.170167 mm, started at -0.170985 mm, distance = 0.82 um
17-03-18 06:15:55.814 -07 000000610 INF: FPGA: Xmit ZDACW 37173\n [Z Motor]
17-03-18 06:15:55.814 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:15:55.824 -07 000000610 INF: FPGA: 'ZDACW 37173' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:15:55.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:55.824 -07 000000561 INF: FPGA: Recv ZDACR 37173
17-03-18 06:15:55.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:55.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:55.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.984 -07 000000611 INF: FPGA: Recv ZSGSRD 35777
17-03-18 06:15:55.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:55.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:55.994 -07 000000626 INF: FPGA: Recv ZSGSRD 35783
17-03-18 06:15:56.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35775
17-03-18 06:15:56.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.014 -07 000000626 INF: FPGA: Recv ZSGSRD 35779
17-03-18 06:15:56.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.024 -07 000000618 INF: FPGA: Recv ZSGSRD 35780
17-03-18 06:15:56.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.034 -07 000000561 INF: FPGA: Recv ZSGSRD 35780
17-03-18 06:15:56.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.044 -07 000000590 INF: FPGA: Recv ZSGSRD 35788
17-03-18 06:15:56.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.054 -07 000000626 INF: FPGA: Recv ZSGSRD 35772
17-03-18 06:15:56.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.064 -07 000000590 INF: FPGA: Recv ZSGSRD 35783
17-03-18 06:15:56.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:56.074 -07 000000424 INF: FPGA: Recv ZSGSRD 35785
17-03-18 06:15:56.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:56.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:56.084 -07 000000590 INF: FPGA: Recv ZPIEZORD 31617
17-03-18 06:15:56.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:56.094 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.2 V.
17-03-18 06:15:56.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35780 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35780 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35772 (-169.3 uncal um), Max = 35788 (-169.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:15:56.094 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35780, posNoise = 8, negNoise = 8
17-03-18 06:15:56.094 -07 000000610 INF: Z Motor: After move to -0.170167, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:56.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:15:56.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:56.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:56.094 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:56.094 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:56.094 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:56.094 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:56.094 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:56.094 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:56.094 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:15:56.094 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:56.094 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:56.094 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:56.094 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:15:56.094 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:56.104 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:15:56.104 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:56.104 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:15:56.104 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:15:56.104 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:15:56.104 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:15:56.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37349 150\n [Camera]
17-03-18 06:15:56.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:15:56.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:15:56.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:15:56.764 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:56.764 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:56.764 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:15:56.764 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:15:56.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:15:56.774 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:56.774 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:56.774 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:15:56.844 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:15:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:15:56.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37349 842
17-03-18 06:15:57.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:15:57.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:15:57.144 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:15:57.144 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:57.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:15:57.144 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:15:57.144 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:57.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:57.154 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:15:57.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:15:57.154 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:15:57.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:15:57.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:15:57.324 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:15:57.324 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:15:57.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:15:57.334 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:15:57.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:15:57.334 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:15:57.334 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:15:57.334 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:15:57.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:15:57.524 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:15:57.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37349 150' command took 4 ms to send, 1400 ms to get response, and 1408 ms overall
17-03-18 06:15:57.524 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170423
17-03-18 06:15:57.524 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17042 mm
17-03-18 06:15:57.524 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:15:57.644 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:15:57.644 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:15:57.644 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37229, sync = True, waitForSettling = False)
17-03-18 06:15:57.644 -07 000000611 INF: Z Motor: Moving to -0.170423 mm, started at -0.170182 mm, distance = -0.24 um
17-03-18 06:15:57.644 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:57.654 -07 000000611 INF: FPGA: Xmit ZDACW 37229\n [Z Motor]
17-03-18 06:15:57.654 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:15:57.654 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:15:57.654 -07 000000618 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:57.654 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:15:57.654 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:15:57.654 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:15:57.664 -07 000000611 INF: FPGA: 'ZDACW 37229' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:15:57.664 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:15:57.674 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:57.674 -07 000000606 INF: FPGA: Recv ZDACR 37229
17-03-18 06:15:57.684 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:15:57.684 -07 000000611 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:15:57.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:15:57.714 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:15:57.714 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:57.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:15:57.714 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:15:57.714 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:15:57.724 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:15:57.724 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:15:57.724 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:15:57.724 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:15:58.034 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:15:58.034 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:15:58.094 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:58.094 -07 000000626 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:15:58.104 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:15:58.104 -07 000000618 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:58.104 -07 000000618 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:15:58.104 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 06:15:59.054 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:15:59.054 -07 000000424 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:15:59.064 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:59.064 -07 000000618 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:15:59.094 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:15:59.094 -07 000000618 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:15:59.094 -07 000000618 INF: Y Motor: Moved to 64.0557 after 1442 ms (table move)
17-03-18 06:15:59.094 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170423 mm (DAC = 37229)
17-03-18 06:15:59.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:15:59.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:15:59.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.104 -07 000000626 INF: FPGA: Recv ZSGSRD 35815
17-03-18 06:15:59.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35814
17-03-18 06:15:59.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35813
17-03-18 06:15:59.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.134 -07 000000424 INF: FPGA: Recv ZSGSRD 35817
17-03-18 06:15:59.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:15:59.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.154 -07 000000626 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:15:59.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35825
17-03-18 06:15:59.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35830
17-03-18 06:15:59.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35818
17-03-18 06:15:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:59.194 -07 000000626 INF: FPGA: Recv ZPIEZORD 31622
17-03-18 06:15:59.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.3 V.
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35818 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35813 (-169.5 uncal um), Max = 35830 (-169.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35818, posNoise = 12, negNoise = 5
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: After move to -0.170423, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:15:59.204 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:15:59.254 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms
17-03-18 06:15:59.254 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:15:59.254 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170425782504729. ----------
17-03-18 06:15:59.254 -07 000000610 INF: Cycle	147	Tile	6	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:15:59.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37052, sync = True, waitForSettling = True)
17-03-18 06:15:59.254 -07 000000610 INF: Z Motor: Moving to -0.169613 mm, started at -0.170426 mm, distance = 0.81 um
17-03-18 06:15:59.254 -07 000000610 INF: FPGA: Xmit ZDACW 37052\n [Z Motor]
17-03-18 06:15:59.264 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:15:59.264 -07 000000610 INF: FPGA: 'ZDACW 37052' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:15:59.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:15:59.264 -07 000000590 INF: FPGA: Recv ZDACR 37052
17-03-18 06:15:59.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:15:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.424 -07 000000474 INF: FPGA: Recv ZSGSRD 35696
17-03-18 06:15:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:15:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.434 -07 000000474 INF: FPGA: Recv ZSGSRD 35693
17-03-18 06:15:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:15:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.454 -07 000000579 INF: FPGA: Recv ZSGSRD 35693
17-03-18 06:15:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35698
17-03-18 06:15:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.474 -07 000000561 INF: FPGA: Recv ZSGSRD 35697
17-03-18 06:15:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.484 -07 000000579 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:15:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.494 -07 000000561 INF: FPGA: Recv ZSGSRD 35697
17-03-18 06:15:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.504 -07 000000579 INF: FPGA: Recv ZSGSRD 35698
17-03-18 06:15:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:15:59.514 -07 000000561 INF: FPGA: Recv ZSGSRD 35690
17-03-18 06:15:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:15:59.524 -07 000000561 INF: FPGA: Recv ZPIEZORD 31426
17-03-18 06:15:59.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:15:59.534 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -9.4 V.
17-03-18 06:15:59.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35694 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35688 (-168.7 uncal um), Max = 35698 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:15:59.534 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35694, posNoise = 4, negNoise = 6
17-03-18 06:15:59.534 -07 000000610 INF: Z Motor: After move to -0.169613, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:15:59.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:15:59.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:15:59.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:15:59.534 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:15:59.534 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:15:59.534 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:15:59.534 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:15:59.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:15:59.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:15:59.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:15:59.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:15:59.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:15:59.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:15:59.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:15:59.544 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:15:59.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:15:59.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:15:59.554 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:15:59.554 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:15:59.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:15:59.554 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:15:59.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37229 150\n [Camera]
17-03-18 06:15:59.764 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:16:00.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:00.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:00.214 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:00.214 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:00.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:00.214 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:00.224 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:00.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:16:00.224 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:00.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:00.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37229 840
17-03-18 06:16:00.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:00.594 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:16:00.594 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:16:00.594 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:00.594 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:00.594 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:16:00.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:16:00.594 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:16:00.594 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:00.604 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:00.614 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:16:00.704 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.042558,
17-03-18 06:16:00.774 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:00.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:00.774 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:00.774 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:00.774 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:16:00.784 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:00.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:00.784 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:00.784 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:00.784 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:16:00.964 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:00.964 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:00.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37229 150' command took 2 ms to send, 1399 ms to get response, and 1408 ms overall
17-03-18 06:16:00.974 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170021
17-03-18 06:16:00.974 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17002 mm
17-03-18 06:16:00.974 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:00.974 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:16:00.974 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:16:00.974 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37141, sync = True, waitForSettling = False)
17-03-18 06:16:00.974 -07 000000561 INF: Z Motor: Moving to -0.170021 mm, started at -0.169629 mm, distance = -0.39 um
17-03-18 06:16:00.974 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:00.974 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:16:00.984 -07 000000561 INF: FPGA: Xmit ZDACW 37141\n [Z Motor]
17-03-18 06:16:00.984 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:00.984 -07 000000618 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:00.984 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:00.984 -07 000000618 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:16:00.984 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:16:00.994 -07 000000561 INF: FPGA: 'ZDACW 37141' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:16:00.994 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:00.994 -07 000000579 INF: FPGA: Recv ZDACR 37141
17-03-18 06:16:01.004 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:01.004 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:01.004 -07 000000561 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 06:16:01.164 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:16:01.164 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:16:01.164 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:01.164 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:16:01.164 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:16:01.164 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:01.164 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:16:01.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:16:01.164 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:16:01.174 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:16:01.374 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:16:01.374 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:16:01.434 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:01.444 -07 000000424 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:16:01.444 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:01.444 -07 000000618 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:01.444 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:16:01.444 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 06:16:01.844 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:02.394 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:02.394 -07 000000590 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:16:02.404 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:02.404 -07 000000618 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:02.434 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:02.434 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:02.434 -07 000000618 INF: Y Motor: Moved to 64.8774 after 1459 ms (table move)
17-03-18 06:16:02.434 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170021 mm (DAC = 37141)
17-03-18 06:16:02.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35755
17-03-18 06:16:02.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:02.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35757
17-03-18 06:16:02.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.454 -07 000000611 INF: FPGA: Recv ZSGSRD 35760
17-03-18 06:16:02.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.464 -07 000000618 INF: FPGA: Recv ZSGSRD 35755
17-03-18 06:16:02.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.474 -07 000000611 INF: FPGA: Recv ZSGSRD 35752
17-03-18 06:16:02.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.484 -07 000000581 INF: FPGA: Recv ZSGSRD 35756
17-03-18 06:16:02.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.494 -07 000000424 INF: FPGA: Recv ZSGSRD 35749
17-03-18 06:16:02.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.504 -07 000000579 INF: FPGA: Recv ZSGSRD 35755
17-03-18 06:16:02.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.514 -07 000000424 INF: FPGA: Recv ZSGSRD 35759
17-03-18 06:16:02.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.524 -07 000000618 INF: FPGA: Recv ZSGSRD 35757
17-03-18 06:16:02.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:02.534 -07 000000424 INF: FPGA: Recv ZPIEZORD 31560
17-03-18 06:16:02.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.3 V.
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35756 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35749 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35756, posNoise = 4, negNoise = 7
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: After move to -0.170021, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:16:02.544 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:02.594 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 06:16:02.594 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:02.594 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.17002748135194. ----------
17-03-18 06:16:02.594 -07 000000610 INF: Cycle	147	Tile	7	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:02.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36964, sync = True, waitForSettling = True)
17-03-18 06:16:02.594 -07 000000610 INF: Z Motor: Moving to -0.169210 mm, started at -0.170027 mm, distance = 0.82 um
17-03-18 06:16:02.594 -07 000000610 INF: FPGA: Xmit ZDACW 36964\n [Z Motor]
17-03-18 06:16:02.594 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 06:16:02.604 -07 000000610 INF: FPGA: 'ZDACW 36964' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:16:02.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:02.604 -07 000000581 INF: FPGA: Recv ZDACR 36964
17-03-18 06:16:02.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:02.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.764 -07 000000618 INF: FPGA: Recv ZSGSRD 35631
17-03-18 06:16:02.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:02.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.774 -07 000000424 INF: FPGA: Recv ZSGSRD 35640
17-03-18 06:16:02.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.784 -07 000000611 INF: FPGA: Recv ZSGSRD 35627
17-03-18 06:16:02.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.794 -07 000000581 INF: FPGA: Recv ZSGSRD 35624
17-03-18 06:16:02.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.804 -07 000000579 INF: FPGA: Recv ZSGSRD 35628
17-03-18 06:16:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35632
17-03-18 06:16:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.824 -07 000000590 INF: FPGA: Recv ZSGSRD 35631
17-03-18 06:16:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.834 -07 000000424 INF: FPGA: Recv ZSGSRD 35627
17-03-18 06:16:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.844 -07 000000606 INF: FPGA: Recv ZSGSRD 35633
17-03-18 06:16:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:02.854 -07 000000581 INF: FPGA: Recv ZSGSRD 35632
17-03-18 06:16:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:02.864 -07 000000590 INF: FPGA: Recv ZPIEZORD 31361
17-03-18 06:16:02.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:02.874 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.4 V.
17-03-18 06:16:02.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35630 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35631 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35624 (-168.3 uncal um), Max = 35640 (-168.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:02.874 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35630, posNoise = 10, negNoise = 6
17-03-18 06:16:02.874 -07 000000610 INF: Z Motor: After move to -0.169210, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:02.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:16:02.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:02.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:02.874 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:02.874 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:02.874 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:02.874 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:02.874 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:02.874 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:02.874 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:02.874 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:02.874 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:02.874 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:02.884 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:02.884 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:02.884 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:16:02.884 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:02.894 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:16:02.894 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:16:02.894 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:16:02.894 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:16:02.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37141 150\n [Camera]
17-03-18 06:16:03.094 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:03.554 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 650
17-03-18 06:16:03.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 650
17-03-18 06:16:03.554 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:03.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:03.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:16:03.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 650
17-03-18 06:16:03.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 650
17-03-18 06:16:03.554 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:03.554 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:03.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:16:03.744 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37141 840
17-03-18 06:16:03.894 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:03.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:16:03.934 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:16:03.934 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:03.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:16:03.934 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:16:03.934 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:03.934 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:03.934 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:16:03.944 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:16:03.944 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:16:04.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:04.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:04.114 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:04.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:04.114 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:04.114 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:04.114 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:16:04.114 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:04.114 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:04.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:16:04.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:04.304 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:04.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37141 150' command took 2 ms to send, 1405 ms to get response, and 1408 ms overall
17-03-18 06:16:04.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:04.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169218030622078. ------
17-03-18 06:16:04.314 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:04.314 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17585 mm
17-03-18 06:16:04.314 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:04.314 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:04.314 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:16:04.314 -07 000000581 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:16:04.314 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38415, sync = True, waitForSettling = False)
17-03-18 06:16:04.314 -07 000000561 INF: Z Motor: Moving to -0.175853 mm, started at -0.169218 mm, distance = -6.63 um
17-03-18 06:16:04.324 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:04.324 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:04.324 -07 000000579 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:16:04.334 -07 000000561 INF: FPGA: Xmit ZDACW 38415\n [Z Motor]
17-03-18 06:16:04.334 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:16:04.334 -07 000000581 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:04.334 -07 000000581 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:04.334 -07 000000581 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:16:04.334 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:16:04.344 -07 000000561 INF: FPGA: 'ZDACW 38415' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:16:04.344 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:04.354 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:04.364 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:04.364 -07 000000579 INF: FPGA: Recv ZDACR 38415
17-03-18 06:16:04.374 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:16:04.374 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:16:04.514 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:16:04.514 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:16:04.514 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:04.514 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:16:04.514 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:16:04.514 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:04.514 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:04.514 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:04.514 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:16:04.524 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:16:04.544 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:04.544 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:16:04.724 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:16:04.724 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:16:04.784 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:04.784 -07 000000611 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:16:04.794 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:04.794 -07 000000581 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:04.794 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:16:04.794 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 06:16:05.744 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:05.744 -07 000000629 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:16:05.754 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.754 -07 000000581 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:05.794 -07 000000581 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:05.794 -07 000000581 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:05.794 -07 000000581 INF: Y Motor: Moved to 65.7129 after 1477 ms (table move)
17-03-18 06:16:05.794 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175853 mm (DAC = 38415)
17-03-18 06:16:05.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.794 -07 000000581 INF: FPGA: Recv ZSGSRD 36665
17-03-18 06:16:05.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:05.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.804 -07 000000579 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:16:05.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.814 -07 000000590 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:16:05.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36653
17-03-18 06:16:05.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:16:05.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.844 -07 000000382 INF: FPGA: Recv ZSGSRD 36665
17-03-18 06:16:05.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.854 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.854 -07 000000590 INF: FPGA: Recv ZSGSRD 36670
17-03-18 06:16:05.864 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.864 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.864 -07 000000382 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:16:05.874 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.874 -07 000000561 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:16:05.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.884 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:05.884 -07 000000382 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:16:05.894 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.894 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:05.894 -07 000000590 INF: FPGA: Recv ZPIEZORD 32768
17-03-18 06:16:05.904 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.6 V.
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36665 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36653 (-174.9 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 6, negNoise = 11
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: After move to -0.175853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: Settle wait time = 1478 ms, measure time = 106 ms (allowed 150 ms), total time = 1584 ms
17-03-18 06:16:05.904 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:05.954 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:16:05.954 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:05.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:05.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:05.954 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:05.954 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:05.954 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:05.954 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:05.954 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:16:05.954 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:05.964 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:05.964 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:05.974 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:16:05.974 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:16:05.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:06.014 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:06.074 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.011254,
17-03-18 06:16:06.314 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:06.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:06.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:06.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575383840, 0x0, 559484976) start.
17-03-18 06:16:06.354 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:06.354 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:06.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:16:06.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575383840, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:16:06.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:06.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:16:06.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:16:06.454 -07 000000424 INF: Autofocus start
17-03-18 06:16:06.454 -07 000000424 INF: MeasureProfile start
17-03-18 06:16:06.464 -07 000000424 INF: MeasureProfile done
17-03-18 06:16:06.464 -07 000000424 INF: X=64  Z correction [um]=0.2557664
17-03-18 06:16:06.464 -07 000000424 INF: Autofocus finished
17-03-18 06:16:06.474 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:06.474 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:06.484 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:16:06.484 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:06.684 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:06.684 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:06.684 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175860665976659. ----------
17-03-18 06:16:06.684 -07 000000610 INF: Cycle	147	Tile	8	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:06.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36984, sync = True, waitForSettling = True)
17-03-18 06:16:06.694 -07 000000610 INF: Z Motor: Moving to -0.169302 mm, started at -0.175861 mm, distance = 6.56 um
17-03-18 06:16:06.694 -07 000000610 INF: FPGA: Xmit ZDACW 36984\n [Z Motor]
17-03-18 06:16:06.694 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:16:06.704 -07 000000610 INF: FPGA: 'ZDACW 36984' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:06.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:06.704 -07 000000579 INF: FPGA: Recv ZDACR 36984
17-03-18 06:16:06.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:06.844 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:06.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.864 -07 000000581 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:16:06.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.874 -07 000000611 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:16:06.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.884 -07 000000581 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:16:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.894 -07 000000591 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:16:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.904 -07 000000382 INF: FPGA: Recv ZSGSRD 35644
17-03-18 06:16:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.914 -07 000000606 INF: FPGA: Recv ZSGSRD 35639
17-03-18 06:16:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.924 -07 000000474 INF: FPGA: Recv ZSGSRD 35650
17-03-18 06:16:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35641
17-03-18 06:16:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.944 -07 000000382 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:16:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:06.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35642
17-03-18 06:16:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:06.964 -07 000000581 INF: FPGA: Recv ZPIEZORD 31395
17-03-18 06:16:06.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:06.974 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.4 V.
17-03-18 06:16:06.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35645 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35639 (-168.4 uncal um), Max = 35650 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:06.974 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35645, posNoise = 5, negNoise = 6
17-03-18 06:16:06.974 -07 000000610 INF: Z Motor: After move to -0.169302, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:06.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:16:06.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:06.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:06.974 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:06.974 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:06.974 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:06.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:06.974 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:06.974 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:06.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:06.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:06.974 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:06.974 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:06.984 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:06.984 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:06.984 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:06.984 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:06.994 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:16:06.994 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:06.994 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:16:06.994 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:06.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37160 150\n [Camera]
17-03-18 06:16:07.194 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:07.644 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:07.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:07.654 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:07.654 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:07.654 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:16:07.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:07.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:07.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:07.654 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:07.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:16:07.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37160 840
17-03-18 06:16:07.994 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:08.024 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:16:08.024 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:16:08.024 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:08.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:16:08.034 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:16:08.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:08.034 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:16:08.034 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:16:08.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:08.044 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:16:08.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:08.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:08.214 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:08.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:08.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:08.214 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:08.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:16:08.214 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:08.214 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:08.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:16:08.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:08.404 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:08.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37160 150' command took 2 ms to send, 1403 ms to get response, and 1409 ms overall
17-03-18 06:16:08.404 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169750
17-03-18 06:16:08.404 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16975 mm
17-03-18 06:16:08.404 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:08.404 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:16:08.404 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:16:08.404 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37082, sync = True, waitForSettling = False)
17-03-18 06:16:08.404 -07 000000474 INF: Z Motor: Moving to -0.169751 mm, started at -0.169314 mm, distance = -0.44 um
17-03-18 06:16:08.404 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:08.414 -07 000000474 INF: FPGA: Xmit ZDACW 37082\n [Z Motor]
17-03-18 06:16:08.414 -07 000000382 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:16:08.414 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:16:08.414 -07 000000626 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:08.414 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:08.414 -07 000000626 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:16:08.414 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:16:08.424 -07 000000474 INF: FPGA: 'ZDACW 37082' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:16:08.424 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:08.434 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:08.434 -07 000000591 INF: FPGA: Recv ZDACR 37082
17-03-18 06:16:08.444 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:08.444 -07 000000474 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:16:08.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 06:16:08.624 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:16:08.624 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:16:08.624 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:08.624 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:16:08.624 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:08.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:08.624 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:16:08.624 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:08.634 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:16:08.794 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:16:08.794 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:16:08.854 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:08.854 -07 000000611 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:16:08.864 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:08.864 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:08.864 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:16:08.864 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-18 06:16:09.814 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:09.814 -07 000000382 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:16:09.824 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.824 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:09.854 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:09.854 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:09.854 -07 000000626 INF: Y Motor: Moved to 66.5381 after 1446 ms (table move)
17-03-18 06:16:09.854 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169751 mm (DAC = 37082)
17-03-18 06:16:09.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.864 -07 000000382 INF: FPGA: Recv ZSGSRD 35716
17-03-18 06:16:09.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 06:16:09.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.864 -07 000000611 INF: FPGA: Recv ZSGSRD 35704
17-03-18 06:16:09.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:09.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.874 -07 000000382 INF: FPGA: Recv ZSGSRD 35706
17-03-18 06:16:09.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35720
17-03-18 06:16:09.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:09.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.894 -07 000000611 INF: FPGA: Recv ZSGSRD 35712
17-03-18 06:16:09.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.904 -07 000000382 INF: FPGA: Recv ZSGSRD 35704
17-03-18 06:16:09.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.914 -07 000000590 INF: FPGA: Recv ZSGSRD 35714
17-03-18 06:16:09.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.924 -07 000000626 INF: FPGA: Recv ZSGSRD 35717
17-03-18 06:16:09.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.934 -07 000000581 INF: FPGA: Recv ZSGSRD 35716
17-03-18 06:16:09.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:09.944 -07 000000382 INF: FPGA: Recv ZSGSRD 35716
17-03-18 06:16:09.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:09.954 -07 000000581 INF: FPGA: Recv ZPIEZORD 31509
17-03-18 06:16:09.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.3 V.
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35712 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35715 (-168.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35704 (-168.8 uncal um), Max = 35720 (-168.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35712, posNoise = 8, negNoise = 8
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: After move to -0.169751, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:16:09.964 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:10.014 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 06:16:10.014 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:10.014 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.169744816017702. ----------
17-03-18 06:16:10.014 -07 000000610 INF: Cycle	147	Tile	9	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:10.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36905, sync = True, waitForSettling = True)
17-03-18 06:16:10.014 -07 000000610 INF: Z Motor: Moving to -0.168940 mm, started at -0.169745 mm, distance = 0.80 um
17-03-18 06:16:10.014 -07 000000610 INF: FPGA: Xmit ZDACW 36905\n [Z Motor]
17-03-18 06:16:10.014 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:16:10.024 -07 000000610 INF: FPGA: 'ZDACW 36905' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:10.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:10.024 -07 000000382 INF: FPGA: Recv ZDACR 36905
17-03-18 06:16:10.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.184 -07 000000581 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:16:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:10.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.194 -07 000000606 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:16:10.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.204 -07 000000590 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:16:10.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35587
17-03-18 06:16:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35587
17-03-18 06:16:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35582
17-03-18 06:16:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:16:10.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:16:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.264 -07 000000581 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:16:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:10.274 -07 000000474 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:16:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:10.284 -07 000000611 INF: FPGA: Recv ZPIEZORD 31349
17-03-18 06:16:10.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:10.294 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.3 V.
17-03-18 06:16:10.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35588 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35586 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35582 (-168.0 uncal um), Max = 35596 (-168.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:10.294 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35588, posNoise = 8, negNoise = 6
17-03-18 06:16:10.294 -07 000000610 INF: Z Motor: After move to -0.168940, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:10.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:16:10.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:10.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:10.294 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:10.294 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:10.294 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:10.294 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:10.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:10.294 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:10.294 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:16:10.294 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:10.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:10.294 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:10.304 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:10.304 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:10.304 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:10.304 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:10.304 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:16:10.304 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:10.304 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:16:10.314 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:10.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37082 150\n [Camera]
17-03-18 06:16:10.514 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:10.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:10.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:10.974 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:10.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:10.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:10.974 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:10.974 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:10.974 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:10.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:10.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:16:11.164 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37082 843
17-03-18 06:16:11.314 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:11.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 366 ms.
17-03-18 06:16:11.344 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-18 06:16:11.344 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:11.344 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:11.344 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:16:11.344 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:16:11.344 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:11.354 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:11.354 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:16:11.354 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:16:11.434 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.042558,
17-03-18 06:16:11.534 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:11.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:11.534 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:11.534 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:11.534 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:16:11.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:11.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:11.534 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:11.534 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:11.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:16:11.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:11.724 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:11.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37082 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall
17-03-18 06:16:11.724 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169662
17-03-18 06:16:11.724 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16966 mm
17-03-18 06:16:11.724 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:11.724 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:16:11.724 -07 000000382 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:16:11.734 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:11.734 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37063, sync = True, waitForSettling = False)
17-03-18 06:16:11.734 -07 000000581 INF: Z Motor: Moving to -0.169664 mm, started at -0.168948 mm, distance = -0.72 um
17-03-18 06:16:11.734 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:16:11.744 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:11.744 -07 000000382 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:11.744 -07 000000382 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:11.744 -07 000000382 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:16:11.744 -07 000000581 INF: FPGA: Xmit ZDACW 37063\n [Z Motor]
17-03-18 06:16:11.744 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:16:11.754 -07 000000581 INF: FPGA: 'ZDACW 37063' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:11.754 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:11.754 -07 000000606 INF: FPGA: Recv ZDACR 37063
17-03-18 06:16:11.764 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:11.764 -07 000000581 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 06:16:11.764 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:11.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:11.914 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:16:11.914 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:16:11.914 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:11.914 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:16:11.924 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:16:11.924 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:11.924 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:11.924 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:11.924 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:16:11.924 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:16:12.134 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:16:12.134 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:16:12.184 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:12.194 -07 000000626 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:16:12.194 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:16:12.194 -07 000000382 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:12.194 -07 000000382 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:16:12.194 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 06:16:13.144 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:13.144 -07 000000590 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:16:13.154 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.154 -07 000000382 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:13.184 -07 000000382 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:13.184 -07 000000382 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:16:13.184 -07 000000382 INF: Y Motor: Moved to 67.3711 after 1453 ms (table move)
17-03-18 06:16:13.184 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169664 mm (DAC = 37063)
17-03-18 06:16:13.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.184 -07 000000611 INF: FPGA: Recv ZSGSRD 35704
17-03-18 06:16:13.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:13.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.194 -07 000000626 INF: FPGA: Recv ZSGSRD 35702
17-03-18 06:16:13.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.204 -07 000000611 INF: FPGA: Recv ZSGSRD 35703
17-03-18 06:16:13.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35697
17-03-18 06:16:13.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.224 -07 000000382 INF: FPGA: Recv ZSGSRD 35697
17-03-18 06:16:13.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.234 -07 000000591 INF: FPGA: Recv ZSGSRD 35703
17-03-18 06:16:13.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35704
17-03-18 06:16:13.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.254 -07 000000626 INF: FPGA: Recv ZSGSRD 35692
17-03-18 06:16:13.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35702
17-03-18 06:16:13.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.274 -07 000000611 INF: FPGA: Recv ZSGSRD 35704
17-03-18 06:16:13.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:13.284 -07 000000581 INF: FPGA: Recv ZPIEZORD 31513
17-03-18 06:16:13.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.655 V. Piezo Error = -9.2 V.
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35701 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35692 (-168.7 uncal um), Max = 35704 (-168.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35701, posNoise = 3, negNoise = 9
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: After move to -0.169664, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:16:13.294 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:13.344 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 06:16:13.344 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:13.344 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.169674149684143. ----------
17-03-18 06:16:13.344 -07 000000610 INF: Cycle	147	Tile	10	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:13.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36886, sync = True, waitForSettling = True)
17-03-18 06:16:13.344 -07 000000610 INF: Z Motor: Moving to -0.168853 mm, started at -0.169674 mm, distance = 0.82 um
17-03-18 06:16:13.344 -07 000000610 INF: FPGA: Xmit ZDACW 36886\n [Z Motor]
17-03-18 06:16:13.344 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:16:13.354 -07 000000610 INF: FPGA: 'ZDACW 36886' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:16:13.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:13.354 -07 000000606 INF: FPGA: Recv ZDACR 36886
17-03-18 06:16:13.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:13.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.514 -07 000000626 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:16:13.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:13.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.524 -07 000000606 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:16:13.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.534 -07 000000581 INF: FPGA: Recv ZSGSRD 35572
17-03-18 06:16:13.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.544 -07 000000382 INF: FPGA: Recv ZSGSRD 35570
17-03-18 06:16:13.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.554 -07 000000611 INF: FPGA: Recv ZSGSRD 35574
17-03-18 06:16:13.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.564 -07 000000382 INF: FPGA: Recv ZSGSRD 35579
17-03-18 06:16:13.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.574 -07 000000611 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:16:13.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.584 -07 000000591 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:16:13.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35574
17-03-18 06:16:13.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:13.604 -07 000000590 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:16:13.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:13.614 -07 000000591 INF: FPGA: Recv ZPIEZORD 31348
17-03-18 06:16:13.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:13.624 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-18 06:16:13.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35576 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35570 (-168.0 uncal um), Max = 35579 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:16:13.624 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 4, negNoise = 5
17-03-18 06:16:13.624 -07 000000610 INF: Z Motor: After move to -0.168853, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:13.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:16:13.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:13.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:13.624 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:13.624 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:13.624 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:13.624 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:13.624 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:13.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:13.624 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:13.624 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:13.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:13.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:13.634 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:13.634 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:13.634 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:13.634 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:13.644 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:16:13.644 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:16:13.644 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:16:13.644 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:16:13.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37063 150\n [Camera]
17-03-18 06:16:13.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:14.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:14.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:14.304 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:14.304 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:14.304 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:16:14.304 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:14.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:14.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:14.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:14.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) start.
17-03-18 06:16:14.494 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37063 840
17-03-18 06:16:14.644 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:14.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:16:14.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:16:14.684 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:14.684 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:14.684 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:16:14.804 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:16:14.804 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:16:14.804 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:14.804 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:14.814 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 06:16:14.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:14.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:14.864 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:14.874 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:14.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:14.874 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:14.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:14.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:16:14.884 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:14.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:16:15.054 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:15.064 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:15.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37063 150' command took 2 ms to send, 1399 ms to get response, and 1408 ms overall
17-03-18 06:16:15.064 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169201
17-03-18 06:16:15.064 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16920 mm
17-03-18 06:16:15.064 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:15.064 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:16:15.064 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:16:15.064 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:15.064 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36962, sync = True, waitForSettling = False)
17-03-18 06:16:15.064 -07 000000618 INF: Z Motor: Moving to -0.169201 mm, started at -0.168865 mm, distance = -0.34 um
17-03-18 06:16:15.064 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:16:15.074 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:15.074 -07 000000618 INF: FPGA: Xmit ZDACW 36962\n [Z Motor]
17-03-18 06:16:15.074 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:15.074 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:15.074 -07 000000626 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:16:15.074 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:16:15.084 -07 000000618 INF: FPGA: 'ZDACW 36962' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:16:15.084 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:15.094 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:15.094 -07 000000629 INF: FPGA: Recv ZDACR 36962
17-03-18 06:16:15.104 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:15.104 -07 000000618 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 06:16:15.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:16:15.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:16:15.254 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:15.254 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:16:15.254 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:16:15.254 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:15.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:15.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:16:15.254 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:15.264 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:16:15.454 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:16:15.454 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:16:15.514 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:15.514 -07 000000618 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:16:15.524 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:15.524 -07 000000626 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:15.524 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:16:15.524 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.842 mm, average velocity = 2.169 mm/sec
17-03-18 06:16:16.474 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:16.474 -07 000000590 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:16:16.484 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.484 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:16.514 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:16.514 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:16:16.514 -07 000000626 INF: Y Motor: Moved to 68.2041 after 1448 ms (table move)
17-03-18 06:16:16.514 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169201 mm (DAC = 36962)
17-03-18 06:16:16.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.524 -07 000000424 INF: FPGA: Recv ZSGSRD 35628
17-03-18 06:16:16.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:16.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.524 -07 000000424 INF: FPGA: Recv ZSGSRD 35629
17-03-18 06:16:16.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.534 -07 000000424 INF: FPGA: Recv ZSGSRD 35619
17-03-18 06:16:16.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.544 -07 000000611 INF: FPGA: Recv ZSGSRD 35625
17-03-18 06:16:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.554 -07 000000611 INF: FPGA: Recv ZSGSRD 35631
17-03-18 06:16:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.564 -07 000000611 INF: FPGA: Recv ZSGSRD 35617
17-03-18 06:16:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.574 -07 000000611 INF: FPGA: Recv ZSGSRD 35626
17-03-18 06:16:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.584 -07 000000581 INF: FPGA: Recv ZSGSRD 35628
17-03-18 06:16:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.594 -07 000000581 INF: FPGA: Recv ZSGSRD 35626
17-03-18 06:16:16.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.604 -07 000000581 INF: FPGA: Recv ZSGSRD 35633
17-03-18 06:16:16.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:16.614 -07 000000581 INF: FPGA: Recv ZPIEZORD 31434
17-03-18 06:16:16.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.2 V.
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35626 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35627 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35617 (-168.3 uncal um), Max = 35633 (-168.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35626, posNoise = 7, negNoise = 9
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: After move to -0.169201, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-18 06:16:16.624 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:16.674 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:16:16.674 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:16.674 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.169192333773511. ----------
17-03-18 06:16:16.674 -07 000000610 INF: Cycle	147	Tile	11	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:16.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36785, sync = True, waitForSettling = True)
17-03-18 06:16:16.674 -07 000000610 INF: Z Motor: Moving to -0.168391 mm, started at -0.169192 mm, distance = 0.80 um
17-03-18 06:16:16.674 -07 000000610 INF: FPGA: Xmit ZDACW 36785\n [Z Motor]
17-03-18 06:16:16.674 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:16:16.684 -07 000000610 INF: FPGA: 'ZDACW 36785' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:16.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:16.684 -07 000000591 INF: FPGA: Recv ZDACR 36785
17-03-18 06:16:16.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:16.804 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.005817,
17-03-18 06:16:16.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.844 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:16.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:16.844 -07 000000474 INF: FPGA: Recv ZSGSRD 35501
17-03-18 06:16:16.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:16.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.864 -07 000000629 INF: FPGA: Recv ZSGSRD 35497
17-03-18 06:16:16.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:16.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35504
17-03-18 06:16:16.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.884 -07 000000611 INF: FPGA: Recv ZSGSRD 35501
17-03-18 06:16:16.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.894 -07 000000591 INF: FPGA: Recv ZSGSRD 35499
17-03-18 06:16:16.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.904 -07 000000629 INF: FPGA: Recv ZSGSRD 35499
17-03-18 06:16:16.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.914 -07 000000474 INF: FPGA: Recv ZSGSRD 35509
17-03-18 06:16:16.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35501
17-03-18 06:16:16.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.934 -07 000000424 INF: FPGA: Recv ZSGSRD 35502
17-03-18 06:16:16.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:16.944 -07 000000382 INF: FPGA: Recv ZSGSRD 35500
17-03-18 06:16:16.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:16.954 -07 000000611 INF: FPGA: Recv ZPIEZORD 31211
17-03-18 06:16:16.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:16.964 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.5 V.
17-03-18 06:16:16.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35501 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35501 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35497 (-167.5 uncal um), Max = 35509 (-167.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:16:16.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35501, posNoise = 8, negNoise = 4
17-03-18 06:16:16.964 -07 000000610 INF: Z Motor: After move to -0.168391, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:16.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 06:16:16.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:16.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:16.964 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:16.964 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:16.964 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:16.964 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:16.964 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:16.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:16.964 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:16:16.964 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:16.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:16.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:16.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:16.974 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:16.974 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:16.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:16.984 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:16:16.984 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:16:16.984 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:16:16.984 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:16:16.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36962 150\n [Camera]
17-03-18 06:16:17.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:17.644 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:17.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:17.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:17.644 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:17.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:17.644 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:17.644 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:17.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:16:17.654 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:17.654 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:16:17.834 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36962 840
17-03-18 06:16:17.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:18.024 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:16:18.024 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:16:18.024 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:18.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:16:18.034 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:16:18.034 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:18.034 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:18.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:18.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:16:18.044 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:16:18.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:18.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:18.204 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:18.204 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:18.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:16:18.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:18.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:18.204 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:18.344 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:18.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) start.
17-03-18 06:16:18.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:18.394 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:18.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36962 150' command took 2 ms to send, 1397 ms to get response, and 1408 ms overall
17-03-18 06:16:18.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:18.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168389307255791. ------
17-03-18 06:16:18.404 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17493 mm
17-03-18 06:16:18.404 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:18.404 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:18.404 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38214, sync = True, waitForSettling = False)
17-03-18 06:16:18.404 -07 000000606 INF: Z Motor: Moving to -0.174932 mm, started at -0.168389 mm, distance = -6.54 um
17-03-18 06:16:18.404 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:16:18.404 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:16:18.404 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:18.414 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:18.414 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:18.414 -07 000000474 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:16:18.424 -07 000000606 INF: FPGA: Xmit ZDACW 38214\n [Z Motor]
17-03-18 06:16:18.424 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:16:18.424 -07 000000382 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:18.424 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:18.424 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:16:18.424 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:16:18.434 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:18.434 -07 000000606 INF: FPGA: 'ZDACW 38214' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:16:18.444 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:18.454 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:18.454 -07 000000474 INF: FPGA: Recv ZDACR 38214
17-03-18 06:16:18.464 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:16:18.464 -07 000000606 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:16:18.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:16:18.604 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:16:18.604 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:18.604 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:18.604 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:16:18.634 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:18.634 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:16:18.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:16:18.714 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:16:18.714 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:18.714 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:18.724 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 06:16:18.814 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:16:18.814 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:16:18.874 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:18.874 -07 000000561 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:16:18.884 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:18.884 -07 000000382 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:18.884 -07 000000382 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:16:18.884 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 06:16:19.834 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:19.834 -07 000000618 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:16:19.844 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:19.844 -07 000000382 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:19.874 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:19.874 -07 000000382 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:19.874 -07 000000382 INF: Y Motor: Moved to 69.0259 after 1465 ms (table move)
17-03-18 06:16:19.874 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174932 mm (DAC = 38214)
17-03-18 06:16:19.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.874 -07 000000382 INF: FPGA: Recv ZSGSRD 36516
17-03-18 06:16:19.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:19.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.884 -07 000000461 INF: FPGA: Recv ZSGSRD 36517
17-03-18 06:16:19.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.894 -07 000000561 INF: FPGA: Recv ZSGSRD 36517
17-03-18 06:16:19.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.904 -07 000000606 INF: FPGA: Recv ZSGSRD 36523
17-03-18 06:16:19.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.914 -07 000000474 INF: FPGA: Recv ZSGSRD 36519
17-03-18 06:16:19.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.924 -07 000000561 INF: FPGA: Recv ZSGSRD 36529
17-03-18 06:16:19.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.934 -07 000000474 INF: FPGA: Recv ZSGSRD 36527
17-03-18 06:16:19.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.944 -07 000000626 INF: FPGA: Recv ZSGSRD 36529
17-03-18 06:16:19.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.954 -07 000000461 INF: FPGA: Recv ZSGSRD 36522
17-03-18 06:16:19.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.964 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:19.964 -07 000000618 INF: FPGA: Recv ZSGSRD 36524
17-03-18 06:16:19.974 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.974 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:19.974 -07 000000561 INF: FPGA: Recv ZPIEZORD 32647
17-03-18 06:16:19.984 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.6 V.
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36522 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36522 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36516 (-174.0 uncal um), Max = 36529 (-174.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36522, posNoise = 7, negNoise = 6
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: After move to -0.174932, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:16:19.984 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:20.034 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:16:20.034 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:20.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:20.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:20.034 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:20.034 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:20.034 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:20.034 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:20.044 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:16:20.044 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:20.044 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:20.044 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:20.054 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:16:20.054 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:16:20.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:20.104 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:20.404 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:20.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:20.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:20.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:16:20.444 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:20.444 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:20.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:16:20.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:16:20.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:20.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:16:20.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:16:20.544 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:20.544 -07 000000590 INF: Autofocus start
17-03-18 06:16:20.544 -07 000000590 INF: MeasureProfile start
17-03-18 06:16:20.544 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:20.554 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:20.554 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:20.554 -07 000000590 INF: MeasureProfile done
17-03-18 06:16:20.554 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:16:20.554 -07 000000590 INF: Autofocus finished
17-03-18 06:16:20.754 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:20.754 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-18 06:16:20.764 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174948427852529. ----------
17-03-18 06:16:20.764 -07 000000610 INF: Cycle	147	Tile	12	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:20.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36729, sync = True, waitForSettling = True)
17-03-18 06:16:20.764 -07 000000610 INF: Z Motor: Moving to -0.168135 mm, started at -0.174948 mm, distance = 6.81 um
17-03-18 06:16:20.764 -07 000000610 INF: FPGA: Xmit ZDACW 36729\n [Z Motor]
17-03-18 06:16:20.774 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:16:20.774 -07 000000610 INF: FPGA: 'ZDACW 36729' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:20.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:20.774 -07 000000618 INF: FPGA: Recv ZDACR 36729
17-03-18 06:16:20.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:20.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.934 -07 000000382 INF: FPGA: Recv ZSGSRD 35466
17-03-18 06:16:20.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:20.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.944 -07 000000606 INF: FPGA: Recv ZSGSRD 35466
17-03-18 06:16:20.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.954 -07 000000626 INF: FPGA: Recv ZSGSRD 35460
17-03-18 06:16:20.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35458
17-03-18 06:16:20.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:16:20.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.984 -07 000000474 INF: FPGA: Recv ZSGSRD 35465
17-03-18 06:16:20.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:20.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:20.994 -07 000000606 INF: FPGA: Recv ZSGSRD 35466
17-03-18 06:16:21.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:21.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:21.004 -07 000000474 INF: FPGA: Recv ZSGSRD 35463
17-03-18 06:16:21.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:21.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:21.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35461
17-03-18 06:16:21.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:21.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:21.024 -07 000000618 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:16:21.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:21.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:21.034 -07 000000382 INF: FPGA: Recv ZPIEZORD 31214
17-03-18 06:16:21.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:21.044 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.4 V.
17-03-18 06:16:21.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35463 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35463 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35458 (-167.2 uncal um), Max = 35466 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:16:21.044 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35463, posNoise = 3, negNoise = 5
17-03-18 06:16:21.044 -07 000000610 INF: Z Motor: After move to -0.168135, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:21.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 06:16:21.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:21.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:21.044 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:21.044 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:21.044 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:21.044 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:21.044 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:21.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:21.044 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:16:21.044 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:21.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:21.044 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:21.054 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:21.054 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:21.054 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:21.054 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:21.064 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:16:21.064 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:16:21.064 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:16:21.064 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:16:21.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36906 150\n [Camera]
17-03-18 06:16:21.264 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 06:16:21.724 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:21.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:21.724 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:21.724 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:21.724 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:16:21.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:21.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:21.724 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:21.724 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:21.724 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:21.844 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:21.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36906 840
17-03-18 06:16:22.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:22.094 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:16:22.094 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:16:22.094 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:22.104 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:16:22.104 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:16:22.104 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:22.104 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:22.104 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:22.104 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:16:22.104 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:16:22.164 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.98264,
17-03-18 06:16:22.284 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:22.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:22.284 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:22.284 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:22.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:16:22.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:22.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:22.284 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:22.284 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:22.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:16:22.474 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:22.474 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:22.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36906 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall
17-03-18 06:16:22.474 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168500
17-03-18 06:16:22.474 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16850 mm
17-03-18 06:16:22.474 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:22.474 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:16:22.474 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:16:22.474 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:22.474 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36809, sync = True, waitForSettling = False)
17-03-18 06:16:22.474 -07 000000561 INF: Z Motor: Moving to -0.168501 mm, started at -0.168145 mm, distance = -0.36 um
17-03-18 06:16:22.484 -07 000000561 INF: FPGA: Xmit ZDACW 36809\n [Z Motor]
17-03-18 06:16:22.484 -07 000000581 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:16:22.594 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:16:22.594 -07 000000561 INF: FPGA: 'ZDACW 36809' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 06:16:22.594 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:22.594 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 118 ms to get response, and 119 ms overall
17-03-18 06:16:22.594 -07 000000461 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:22.594 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:22.594 -07 000000461 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:16:22.604 -07 000000626 INF: FPGA: Recv ZDACR 36809
17-03-18 06:16:22.604 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:16:22.604 -07 000000561 INF: Z Motor: MoveAbsStepped took 122 ms (did NOT wait for settling yet))
17-03-18 06:16:22.624 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:22.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:16:22.664 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:16:22.664 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:16:22.664 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:22.664 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:16:22.664 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:22.674 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:22.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:16:22.674 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:16:22.684 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:16:22.994 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:16:22.994 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:16:23.054 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:23.054 -07 000000618 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:16:23.064 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:23.064 -07 000000461 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:23.064 -07 000000461 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:16:23.064 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.847 mm, average velocity = 2.122 mm/sec
17-03-18 06:16:24.014 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:24.014 -07 000000585 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:16:24.024 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.024 -07 000000461 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:24.054 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:24.054 -07 000000461 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:24.054 -07 000000461 INF: Y Motor: Moved to 69.8618 after 1574 ms (table move)
17-03-18 06:16:24.054 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168501 mm (DAC = 36809)
17-03-18 06:16:24.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.054 -07 000000501 INF: FPGA: Recv ZSGSRD 35520
17-03-18 06:16:24.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:16:24.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.064 -07 000000606 INF: FPGA: Recv ZSGSRD 35520
17-03-18 06:16:24.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.074 -07 000000629 INF: FPGA: Recv ZSGSRD 35516
17-03-18 06:16:24.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.084 -07 000000479 INF: FPGA: Recv ZSGSRD 35515
17-03-18 06:16:24.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.094 -07 000000579 INF: FPGA: Recv ZSGSRD 35514
17-03-18 06:16:24.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.104 -07 000000611 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:16:24.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.114 -07 000000585 INF: FPGA: Recv ZSGSRD 35518
17-03-18 06:16:24.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35521
17-03-18 06:16:24.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.134 -07 000000479 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:16:24.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.144 -07 000000467 INF: FPGA: Recv ZSGSRD 35519
17-03-18 06:16:24.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:24.154 -07 000000479 INF: FPGA: Recv ZPIEZORD 31328
17-03-18 06:16:24.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.2 V.
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35519 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35518 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35514 (-167.6 uncal um), Max = 35526 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35519, posNoise = 7, negNoise = 5
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: After move to -0.168501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: Settle wait time = 1577 ms, measure time = 104 ms (allowed 150 ms), total time = 1681 ms
17-03-18 06:16:24.164 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:24.214 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 06:16:24.214 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:24.214 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168504943074342. ----------
17-03-18 06:16:24.214 -07 000000610 INF: Cycle	147	Tile	13	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:24.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36632, sync = True, waitForSettling = True)
17-03-18 06:16:24.214 -07 000000610 INF: Z Motor: Moving to -0.167691 mm, started at -0.168505 mm, distance = 0.81 um
17-03-18 06:16:24.214 -07 000000610 INF: FPGA: Xmit ZDACW 36632\n [Z Motor]
17-03-18 06:16:24.214 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:16:24.224 -07 000000610 INF: FPGA: 'ZDACW 36632' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:24.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:24.224 -07 000000611 INF: FPGA: Recv ZDACR 36632
17-03-18 06:16:24.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:24.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.384 -07 000000591 INF: FPGA: Recv ZSGSRD 35395
17-03-18 06:16:24.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:24.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.394 -07 000000585 INF: FPGA: Recv ZSGSRD 35395
17-03-18 06:16:24.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.404 -07 000000611 INF: FPGA: Recv ZSGSRD 35391
17-03-18 06:16:24.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35388
17-03-18 06:16:24.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.424 -07 000000479 INF: FPGA: Recv ZSGSRD 35399
17-03-18 06:16:24.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.434 -07 000000585 INF: FPGA: Recv ZSGSRD 35394
17-03-18 06:16:24.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.444 -07 000000581 INF: FPGA: Recv ZSGSRD 35396
17-03-18 06:16:24.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35392
17-03-18 06:16:24.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.464 -07 000000591 INF: FPGA: Recv ZSGSRD 35398
17-03-18 06:16:24.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:24.474 -07 000000467 INF: FPGA: Recv ZSGSRD 35395
17-03-18 06:16:24.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:24.484 -07 000000581 INF: FPGA: Recv ZPIEZORD 31146
17-03-18 06:16:24.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:24.494 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.4 V.
17-03-18 06:16:24.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35395 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35388 (-166.8 uncal um), Max = 35399 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:24.494 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 5, negNoise = 6
17-03-18 06:16:24.494 -07 000000610 INF: Z Motor: After move to -0.167691, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:24.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:16:24.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:24.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:24.494 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:24.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:24.494 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:24.494 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:24.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:24.494 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:24.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:24.494 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:24.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:24.494 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:24.494 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:16:24.494 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:24.494 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:24.494 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:24.504 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:16:24.504 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:24.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:16:24.514 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:16:24.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36809 150\n [Camera]
17-03-18 06:16:24.714 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:25.164 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:16:25.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:16:25.174 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:25.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:16:25.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:16:25.174 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:25.174 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:25.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:25.184 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:25.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:16:25.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36809 841
17-03-18 06:16:25.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:25.554 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:16:25.554 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:16:25.554 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:25.554 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:25.554 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:16:25.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:16:25.554 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:16:25.554 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:25.564 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:25.574 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:16:25.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:25.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:25.734 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:25.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:25.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:25.734 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:25.734 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:25.734 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:16:25.744 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:25.744 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:25.924 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:25.924 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:25.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36809 150' command took 2 ms to send, 1401 ms to get response, and 1408 ms overall
17-03-18 06:16:25.924 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168094
17-03-18 06:16:25.924 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16809 mm
17-03-18 06:16:25.924 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:25.924 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:16:25.924 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:16:25.924 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:25.924 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 36720, sync = True, waitForSettling = False)
17-03-18 06:16:25.924 -07 000000585 INF: Z Motor: Moving to -0.168093 mm, started at -0.167702 mm, distance = -0.39 um
17-03-18 06:16:25.934 -07 000000461 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:16:25.934 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:25.934 -07 000000591 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:25.934 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:25.934 -07 000000591 INF: Y Motor: Moving 1345 steps-22
17-03-18 06:16:25.934 -07 000000585 INF: FPGA: Xmit ZDACW 36720\n [Z Motor]
17-03-18 06:16:25.934 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:16:25.944 -07 000000585 INF: FPGA: 'ZDACW 36720' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:16:25.944 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:25.954 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:25.954 -07 000000479 INF: FPGA: Recv ZDACR 36720
17-03-18 06:16:25.964 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:25.964 -07 000000585 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:16:26.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:16:26.124 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:16:26.124 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:26.124 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:26.124 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:16:26.134 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:16:26.134 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:16:26.134 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:26.134 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:26.144 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:16:26.314 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:16:26.324 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 392 ms overall
17-03-18 06:16:26.374 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:26.374 -07 000000611 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:16:26.384 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:26.384 -07 000000591 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:26.384 -07 000000591 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:16:26.384 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.841 mm, average velocity = 2.145 mm/sec
17-03-18 06:16:26.844 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:27.334 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:27.334 -07 000000585 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:16:27.344 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:27.344 -07 000000591 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:27.374 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:27.374 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:16:27.374 -07 000000591 INF: Y Motor: Moved to 70.6875 after 1446 ms (table move)
17-03-18 06:16:27.374 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168093 mm (DAC = 36720)
17-03-18 06:16:27.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35460
17-03-18 06:16:27.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:27.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.384 -07 000000585 INF: FPGA: Recv ZSGSRD 35455
17-03-18 06:16:27.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.394 -07 000000581 INF: FPGA: Recv ZSGSRD 35449
17-03-18 06:16:27.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35453
17-03-18 06:16:27.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35458
17-03-18 06:16:27.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.424 -07 000000479 INF: FPGA: Recv ZSGSRD 35459
17-03-18 06:16:27.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:27.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35461
17-03-18 06:16:27.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.444 -07 000000585 INF: FPGA: Recv ZSGSRD 35462
17-03-18 06:16:27.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.454 -07 000000467 INF: FPGA: Recv ZSGSRD 35459
17-03-18 06:16:27.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.464 -07 000000479 INF: FPGA: Recv ZSGSRD 35458
17-03-18 06:16:27.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:27.474 -07 000000501 INF: FPGA: Recv ZPIEZORD 31209
17-03-18 06:16:27.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35457 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35449 (-167.2 uncal um), Max = 35462 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35457, posNoise = 5, negNoise = 8
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: After move to -0.168093, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-18 06:16:27.484 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:27.524 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.99219,
17-03-18 06:16:27.534 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 06:16:27.534 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:27.534 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.168106641921553. ----------
17-03-18 06:16:27.534 -07 000000610 INF: Cycle	147	Tile	14	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:27.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36543, sync = True, waitForSettling = True)
17-03-18 06:16:27.534 -07 000000610 INF: Z Motor: Moving to -0.167283 mm, started at -0.168107 mm, distance = 0.82 um
17-03-18 06:16:27.554 -07 000000610 INF: FPGA: Xmit ZDACW 36543\n [Z Motor]
17-03-18 06:16:27.554 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:16:27.564 -07 000000610 INF: FPGA: 'ZDACW 36543' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:16:27.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:27.564 -07 000000382 INF: FPGA: Recv ZDACR 36543
17-03-18 06:16:27.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:27.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.724 -07 000000585 INF: FPGA: Recv ZSGSRD 35327
17-03-18 06:16:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:27.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.734 -07 000000585 INF: FPGA: Recv ZSGSRD 35334
17-03-18 06:16:27.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.744 -07 000000618 INF: FPGA: Recv ZSGSRD 35337
17-03-18 06:16:27.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.754 -07 000000585 INF: FPGA: Recv ZSGSRD 35327
17-03-18 06:16:27.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.764 -07 000000618 INF: FPGA: Recv ZSGSRD 35326
17-03-18 06:16:27.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.774 -07 000000585 INF: FPGA: Recv ZSGSRD 35333
17-03-18 06:16:27.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.784 -07 000000585 INF: FPGA: Recv ZSGSRD 35329
17-03-18 06:16:27.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.794 -07 000000585 INF: FPGA: Recv ZSGSRD 35329
17-03-18 06:16:27.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35328
17-03-18 06:16:27.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:27.814 -07 000000585 INF: FPGA: Recv ZSGSRD 35328
17-03-18 06:16:27.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:27.824 -07 000000585 INF: FPGA: Recv ZPIEZORD 31039
17-03-18 06:16:27.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:27.834 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.5 V.
17-03-18 06:16:27.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35330 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35328 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35326 (-166.4 uncal um), Max = 35337 (-166.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:16:27.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35330, posNoise = 7, negNoise = 4
17-03-18 06:16:27.834 -07 000000610 INF: Z Motor: After move to -0.167283, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:27.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 294 ms)
17-03-18 06:16:27.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:27.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:27.834 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:27.834 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:27.834 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:27.834 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:27.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:27.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:27.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:27.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:27.834 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:27.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:27.844 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:16:27.844 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:27.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:27.844 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:27.854 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:16:27.854 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:16:27.854 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:16:27.854 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:16:27.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36720 150\n [Camera]
17-03-18 06:16:28.064 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:16:28.514 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:28.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:28.514 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:28.514 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:28.514 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:16:28.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:28.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:28.514 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:28.524 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:28.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:16:28.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36720 840
17-03-18 06:16:28.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:28.904 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:16:28.904 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:16:28.904 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:28.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:16:28.904 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:16:28.904 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:28.904 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:28.904 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:16:28.904 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:28.914 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:16:29.074 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:29.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:29.074 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:29.074 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:29.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:16:29.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:29.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:29.084 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:29.084 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:29.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:16:29.274 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:16:29.274 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:29.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36720 150' command took 2 ms to send, 1401 ms to get response, and 1411 ms overall
17-03-18 06:16:29.274 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168047
17-03-18 06:16:29.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16805 mm
17-03-18 06:16:29.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:29.274 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:16:29.274 -07 000000591 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:16:29.274 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:29.274 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 36710, sync = True, waitForSettling = False)
17-03-18 06:16:29.274 -07 000000611 INF: Z Motor: Moving to -0.168048 mm, started at -0.167291 mm, distance = -0.76 um
17-03-18 06:16:29.274 -07 000000581 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:16:29.284 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:29.284 -07 000000591 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:29.284 -07 000000591 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:29.284 -07 000000591 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:16:29.284 -07 000000611 INF: FPGA: Xmit ZDACW 36710\n [Z Motor]
17-03-18 06:16:29.284 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:16:29.294 -07 000000611 INF: FPGA: 'ZDACW 36710' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:16:29.294 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:29.304 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:29.304 -07 000000382 INF: FPGA: Recv ZDACR 36710
17-03-18 06:16:29.314 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:29.314 -07 000000611 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:16:29.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:16:29.454 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:16:29.454 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:29.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:16:29.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:16:29.464 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:29.464 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:29.464 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:16:29.464 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:29.474 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:16:29.664 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:16:29.664 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-18 06:16:29.724 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:29.724 -07 000000382 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:16:29.734 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:29.734 -07 000000591 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:29.734 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:16:29.734 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.173 mm/sec
17-03-18 06:16:30.684 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:30.684 -07 000000611 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:16:30.694 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:30.694 -07 000000591 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:30.724 -07 000000591 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:30.724 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:30.724 -07 000000591 INF: Y Motor: Moved to 71.5176 after 1446 ms (table move)
17-03-18 06:16:30.724 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168048 mm (DAC = 36710)
17-03-18 06:16:30.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35456
17-03-18 06:16:30.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:30.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.734 -07 000000591 INF: FPGA: Recv ZSGSRD 35450
17-03-18 06:16:30.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.744 -07 000000501 INF: FPGA: Recv ZSGSRD 35452
17-03-18 06:16:30.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.754 -07 000000618 INF: FPGA: Recv ZSGSRD 35453
17-03-18 06:16:30.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.764 -07 000000581 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:16:30.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.774 -07 000000618 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:16:30.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.784 -07 000000467 INF: FPGA: Recv ZSGSRD 35450
17-03-18 06:16:30.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.794 -07 000000591 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:16:30.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.804 -07 000000581 INF: FPGA: Recv ZSGSRD 35454
17-03-18 06:16:30.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:30.814 -07 000000618 INF: FPGA: Recv ZSGSRD 35454
17-03-18 06:16:30.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:30.824 -07 000000382 INF: FPGA: Recv ZPIEZORD 31223
17-03-18 06:16:30.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.3 V.
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35451 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35446 (-167.2 uncal um), Max = 35456 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 5, negNoise = 5
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: After move to -0.168048, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-18 06:16:30.834 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:30.884 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 06:16:30.884 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:30.884 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.168068096648703. ----------
17-03-18 06:16:30.884 -07 000000610 INF: Cycle	147	Tile	15	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:30.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36533, sync = True, waitForSettling = True)
17-03-18 06:16:30.884 -07 000000610 INF: Z Motor: Moving to -0.167237 mm, started at -0.168068 mm, distance = 0.83 um
17-03-18 06:16:30.884 -07 000000610 INF: FPGA: Xmit ZDACW 36533\n [Z Motor]
17-03-18 06:16:30.884 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:16:30.894 -07 000000610 INF: FPGA: 'ZDACW 36533' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:30.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:30.894 -07 000000611 INF: FPGA: Recv ZDACR 36533
17-03-18 06:16:30.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:30.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:31.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35325
17-03-18 06:16:31.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:31.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35326
17-03-18 06:16:31.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35319
17-03-18 06:16:31.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.084 -07 000000461 INF: FPGA: Recv ZSGSRD 35318
17-03-18 06:16:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.094 -07 000000501 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:16:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.104 -07 000000467 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:16:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.114 -07 000000591 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:16:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35321
17-03-18 06:16:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.134 -07 000000467 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:16:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:31.144 -07 000000611 INF: FPGA: Recv ZSGSRD 35322
17-03-18 06:16:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:31.154 -07 000000618 INF: FPGA: Recv ZPIEZORD 31029
17-03-18 06:16:31.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:31.164 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.575 V. Piezo Error = -9.5 V.
17-03-18 06:16:31.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35322 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35323 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35318 (-166.3 uncal um), Max = 35326 (-166.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:16:31.164 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35322, posNoise = 4, negNoise = 4
17-03-18 06:16:31.164 -07 000000610 INF: Z Motor: After move to -0.167237, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:31.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:16:31.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:31.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:31.164 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:31.164 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:31.164 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:31.164 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:31.164 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:31.164 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:31.164 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:31.164 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:31.164 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:31.164 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:31.164 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:31.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:31.174 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:31.174 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:31.184 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:16:31.184 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:16:31.184 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:16:31.184 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:16:31.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36710 150\n [Camera]
17-03-18 06:16:31.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:31.844 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:31.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:31.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:31.844 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:31.844 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:31.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:16:31.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:31.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:31.854 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:31.854 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:31.854 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:16:32.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36710 840
17-03-18 06:16:32.184 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:32.234 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:16:32.234 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:16:32.234 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:32.234 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:16:32.234 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:16:32.234 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:32.234 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:32.234 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:16:32.244 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:32.244 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:16:32.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:32.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:32.404 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:32.534 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:32.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:32.534 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:32.534 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:32.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:32.544 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:32.544 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:16:32.594 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:32.594 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:32.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36710 150' command took 2 ms to send, 1399 ms to get response, and 1408 ms overall
17-03-18 06:16:32.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:32.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.167239373282415. ------
17-03-18 06:16:32.604 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:32.604 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17370 mm
17-03-18 06:16:32.604 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:32.604 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:32.604 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:16:32.604 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:16:32.604 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37946, sync = True, waitForSettling = False)
17-03-18 06:16:32.604 -07 000000501 INF: Z Motor: Moving to -0.173706 mm, started at -0.167239 mm, distance = -6.47 um
17-03-18 06:16:32.614 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:32.614 -07 000000501 INF: FPGA: Xmit ZDACW 37946\n [Z Motor]
17-03-18 06:16:32.614 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:16:32.624 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:32.624 -07 000000501 INF: FPGA: 'ZDACW 37946' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:16:32.634 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:32.634 -07 000000461 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:16:32.644 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:32.644 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:16:32.644 -07 000000424 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:32.644 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:32.644 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:16:32.644 -07 000000461 INF: FPGA: Recv ZDACR 37946
17-03-18 06:16:32.654 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:32.654 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:16:32.654 -07 000000501 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:16:32.824 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:32.824 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:16:32.904 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.988112,
17-03-18 06:16:32.914 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:16:32.914 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:16:32.914 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:32.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:16:32.914 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:16:32.914 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:32.924 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:32.924 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 06:16:32.924 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:32.934 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:16:33.024 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:16:33.024 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:16:33.084 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:33.084 -07 000000479 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:16:33.094 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:33.094 -07 000000424 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:33.094 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:16:33.094 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.195 mm/sec
17-03-18 06:16:34.044 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:34.044 -07 000000479 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:16:34.054 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:34.054 -07 000000424 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:34.084 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:34.084 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:34.084 -07 000000424 INF: Y Motor: Moved to 72.3481 after 1475 ms (table move)
17-03-18 06:16:34.084 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173706 mm (DAC = 37946)
17-03-18 06:16:34.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.084 -07 000000479 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:16:34.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:34.094 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.094 -07 000000579 INF: FPGA: Recv ZSGSRD 36331
17-03-18 06:16:34.104 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:34.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.104 -07 000000611 INF: FPGA: Recv ZSGSRD 36325
17-03-18 06:16:34.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36326
17-03-18 06:16:34.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36334
17-03-18 06:16:34.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.134 -07 000000474 INF: FPGA: Recv ZSGSRD 36330
17-03-18 06:16:34.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.144 -07 000000590 INF: FPGA: Recv ZSGSRD 36333
17-03-18 06:16:34.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.154 -07 000000585 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:16:34.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.164 -07 000000606 INF: FPGA: Recv ZSGSRD 36330
17-03-18 06:16:34.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:34.174 -07 000000629 INF: FPGA: Recv ZSGSRD 36329
17-03-18 06:16:34.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.184 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:34.184 -07 000000561 INF: FPGA: Recv ZPIEZORD 32350
17-03-18 06:16:34.194 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.8 V.
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36331 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36330 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36325 (-172.8 uncal um), Max = 36335 (-172.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36331, posNoise = 4, negNoise = 6
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: After move to -0.173706, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: Settle wait time = 1478 ms, measure time = 103 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:16:34.194 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:34.244 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:16:34.244 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:34.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:34.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:34.244 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:34.244 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:34.244 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:34.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:34.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:34.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:34.254 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:34.254 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:34.264 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:16:34.264 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:16:34.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:34.314 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:34.614 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:34.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:34.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:34.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:16:34.654 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:34.654 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:34.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 06:16:34.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 06:16:34.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:34.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:16:34.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:16:34.754 -07 000000590 INF: Autofocus start
17-03-18 06:16:34.754 -07 000000590 INF: MeasureProfile start
17-03-18 06:16:34.754 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:34.764 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:34.764 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:16:34.764 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:34.774 -07 000000590 INF: MeasureProfile done
17-03-18 06:16:34.774 -07 000000590 INF: X=-128  Z correction [um]=-0.7427131
17-03-18 06:16:34.774 -07 000000590 INF: Autofocus finished
17-03-18 06:16:34.964 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:34.964 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-18 06:16:34.964 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 06:16:34.974 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173721403333452. ----------
17-03-18 06:16:34.974 -07 000000610 INF: Cycle	147	Tile	16	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:34.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36296, sync = True, waitForSettling = True)
17-03-18 06:16:34.974 -07 000000610 INF: Z Motor: Moving to -0.166152 mm, started at -0.173721 mm, distance = 7.57 um
17-03-18 06:16:34.974 -07 000000610 INF: FPGA: Xmit ZDACW 36296\n [Z Motor]
17-03-18 06:16:34.974 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:16:34.984 -07 000000610 INF: FPGA: 'ZDACW 36296' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:34.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:34.984 -07 000000611 INF: FPGA: Recv ZDACR 36296
17-03-18 06:16:34.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:34.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:35.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.144 -07 000000591 INF: FPGA: Recv ZSGSRD 35155
17-03-18 06:16:35.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:35.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.154 -07 000000461 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:16:35.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.164 -07 000000629 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:16:35.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.174 -07 000000382 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:16:35.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.184 -07 000000626 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:16:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.194 -07 000000382 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:16:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.204 -07 000000606 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:16:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.214 -07 000000590 INF: FPGA: Recv ZSGSRD 35155
17-03-18 06:16:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.224 -07 000000585 INF: FPGA: Recv ZSGSRD 35152
17-03-18 06:16:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:35.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35155
17-03-18 06:16:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:35.244 -07 000000626 INF: FPGA: Recv ZPIEZORD 30828
17-03-18 06:16:35.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:35.254 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.5 V.
17-03-18 06:16:35.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35155 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35155 (-165.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35152 (-165.3 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:16:35.254 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35155, posNoise = 2, negNoise = 3
17-03-18 06:16:35.254 -07 000000610 INF: Z Motor: After move to -0.166152, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:35.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:16:35.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:35.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:35.254 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:35.254 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:35.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:35.254 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:35.254 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:35.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:35.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:35.254 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:35.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:35.254 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:35.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:35.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:35.264 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:35.264 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:35.264 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:16:35.264 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:16:35.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:16:35.264 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:16:35.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36473 150\n [Camera]
17-03-18 06:16:35.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:16:35.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:35.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:35.924 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:35.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:35.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:16:35.924 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:35.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:35.924 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:35.934 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:35.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:36.114 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36473 840
17-03-18 06:16:36.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:36.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:16:36.304 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:16:36.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:36.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:16:36.304 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:16:36.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:36.314 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:36.314 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:16:36.314 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:16:36.324 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:16:36.484 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:36.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:36.484 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:36.604 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:36.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:36.614 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:36.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:36.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:16:36.614 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:36.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:36.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:36.674 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:36.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36473 150' command took 2 ms to send, 1399 ms to get response, and 1408 ms overall
17-03-18 06:16:36.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:36.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166166529854741. ------
17-03-18 06:16:36.684 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:36.684 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17255 mm
17-03-18 06:16:36.684 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:36.684 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:16:36.684 -07 000000467 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:16:36.684 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:36.684 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37694, sync = True, waitForSettling = False)
17-03-18 06:16:36.684 -07 000000585 INF: Z Motor: Moving to -0.172552 mm, started at -0.166167 mm, distance = -6.39 um
17-03-18 06:16:36.694 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:36.694 -07 000000585 INF: FPGA: Xmit ZDACW 37694\n [Z Motor]
17-03-18 06:16:36.694 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:16:36.704 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:36.704 -07 000000585 INF: FPGA: 'ZDACW 37694' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:16:36.704 -07 000000424 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:16:36.714 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:36.714 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:16:36.714 -07 000000467 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:36.714 -07 000000467 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:36.714 -07 000000467 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:16:36.724 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:36.724 -07 000000424 INF: FPGA: Recv ZDACR 37694
17-03-18 06:16:36.734 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:16:36.734 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:36.734 -07 000000585 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:16:36.844 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:36.914 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:36.914 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:16:37.004 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:16:37.004 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:16:37.004 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:37.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:16:37.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:16:37.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:37.004 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:37.004 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 06:16:37.014 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:37.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:16:37.104 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:16:37.104 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 06:16:37.154 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:37.164 -07 000000382 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:16:37.174 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:37.174 -07 000000467 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:37.174 -07 000000467 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:16:37.174 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-18 06:16:38.124 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:38.124 -07 000000590 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:16:38.134 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.134 -07 000000467 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:38.164 -07 000000467 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:38.164 -07 000000467 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:38.164 -07 000000467 INF: Y Motor: Moved to 73.1748 after 1477 ms (table move)
17-03-18 06:16:38.164 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172552 mm (DAC = 37694)
17-03-18 06:16:38.164 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.174 -07 000000590 INF: FPGA: Recv ZSGSRD 36151
17-03-18 06:16:38.174 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:16:38.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.174 -07 000000467 INF: FPGA: Recv ZSGSRD 36151
17-03-18 06:16:38.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:38.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.184 -07 000000424 INF: FPGA: Recv ZSGSRD 36147
17-03-18 06:16:38.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36150
17-03-18 06:16:38.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.204 -07 000000424 INF: FPGA: Recv ZSGSRD 36156
17-03-18 06:16:38.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.214 -07 000000590 INF: FPGA: Recv ZSGSRD 36145
17-03-18 06:16:38.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36149
17-03-18 06:16:38.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.234 -07 000000585 INF: FPGA: Recv ZSGSRD 36149
17-03-18 06:16:38.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.244 -07 000000424 INF: FPGA: Recv ZSGSRD 36150
17-03-18 06:16:38.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:38.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:38.264 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.999021,
17-03-18 06:16:38.264 -07 000000579 INF: FPGA: Recv ZSGSRD 36151
17-03-18 06:16:38.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:38.294 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:38.294 -07 000000467 INF: FPGA: Recv ZPIEZORD 32178
17-03-18 06:16:38.304 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.8 V.
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36150 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36150 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36145 (-171.6 uncal um), Max = 36156 (-171.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36150, posNoise = 6, negNoise = 5
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: After move to -0.172552, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: Settle wait time = 1479 ms, measure time = 132 ms (allowed 150 ms), total time = 1611 ms
17-03-18 06:16:38.304 -07 000000606 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:38.324 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:16:38.324 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:38.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:38.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:38.324 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:38.324 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:38.324 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:38.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:38.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:38.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:38.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:38.334 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:38.344 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:16:38.344 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:16:38.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:38.394 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:38.694 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:38.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:38.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:38.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:16:38.734 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:38.734 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:38.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:16:38.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:16:38.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:38.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:16:38.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:16:38.934 -07 000000382 INF: Autofocus start
17-03-18 06:16:38.934 -07 000000382 INF: MeasureProfile start
17-03-18 06:16:38.934 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:38.934 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:38.944 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:38.944 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:38.944 -07 000000382 INF: MeasureProfile done
17-03-18 06:16:38.944 -07 000000382 INF: X=80  Z correction [um]=0.337546
17-03-18 06:16:38.944 -07 000000382 INF: Autofocus finished
17-03-18 06:16:39.144 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:39.144 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:39.144 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172558620935794. ----------
17-03-18 06:16:39.144 -07 000000610 INF: Cycle	147	Tile	17	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:39.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36281, sync = True, waitForSettling = True)
17-03-18 06:16:39.154 -07 000000610 INF: Z Motor: Moving to -0.166084 mm, started at -0.172559 mm, distance = 6.47 um
17-03-18 06:16:39.154 -07 000000610 INF: FPGA: Xmit ZDACW 36281\n [Z Motor]
17-03-18 06:16:39.154 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:16:39.164 -07 000000610 INF: FPGA: 'ZDACW 36281' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:39.164 -07 000000590 INF: FPGA: Recv ZDACR 36281
17-03-18 06:16:39.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.324 -07 000000467 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:16:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.334 -07 000000590 INF: FPGA: Recv ZSGSRD 35146
17-03-18 06:16:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.344 -07 000000585 INF: FPGA: Recv ZSGSRD 35149
17-03-18 06:16:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.354 -07 000000606 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:16:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35146
17-03-18 06:16:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.374 -07 000000590 INF: FPGA: Recv ZSGSRD 35143
17-03-18 06:16:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.384 -07 000000585 INF: FPGA: Recv ZSGSRD 35149
17-03-18 06:16:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.394 -07 000000579 INF: FPGA: Recv ZSGSRD 35145
17-03-18 06:16:39.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.404 -07 000000382 INF: FPGA: Recv ZSGSRD 35136
17-03-18 06:16:39.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:39.414 -07 000000590 INF: FPGA: Recv ZSGSRD 35149
17-03-18 06:16:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:39.424 -07 000000585 INF: FPGA: Recv ZPIEZORD 30819
17-03-18 06:16:39.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:39.434 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -9.5 V.
17-03-18 06:16:39.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35144 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35146 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35136 (-165.2 uncal um), Max = 35149 (-165.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:16:39.434 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35144, posNoise = 5, negNoise = 8
17-03-18 06:16:39.434 -07 000000610 INF: Z Motor: After move to -0.166084, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:39.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:16:39.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:39.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:39.434 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:39.434 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:39.434 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:39.434 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:39.434 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:39.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:39.434 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:16:39.434 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:39.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:39.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:39.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:39.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:39.444 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:16:39.444 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:39.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:16:39.444 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:39.454 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:16:39.454 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:16:39.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36457 150\n [Camera]
17-03-18 06:16:39.654 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:40.104 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:40.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:40.104 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:40.104 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:40.104 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:16:40.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:40.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:40.114 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:40.114 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:40.114 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:40.304 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36457 840
17-03-18 06:16:40.454 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:40.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:16:40.504 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:16:40.504 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:40.514 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:40.514 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:16:40.514 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:16:40.514 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:16:40.514 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:40.514 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:40.524 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:16:40.674 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:40.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:40.674 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:40.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:40.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:40.784 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:40.794 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:40.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:40.794 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:40.794 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:16:40.864 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:16:40.864 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:40.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36457 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-18 06:16:40.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:40.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166095863521182. ------
17-03-18 06:16:40.864 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:40.864 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17200 mm
17-03-18 06:16:40.864 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:40.874 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:16:40.874 -07 000000479 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:16:40.874 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:40.874 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 06:16:40.874 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:40.874 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37573, sync = True, waitForSettling = False)
17-03-18 06:16:40.874 -07 000000606 INF: Z Motor: Moving to -0.171998 mm, started at -0.166096 mm, distance = -5.90 um
17-03-18 06:16:40.874 -07 000000590 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:16:40.884 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:40.884 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:40.884 -07 000000479 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:40.884 -07 000000479 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:16:40.884 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:40.894 -07 000000606 INF: FPGA: Xmit ZDACW 37573\n [Z Motor]
17-03-18 06:16:40.894 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:16:40.904 -07 000000606 INF: FPGA: 'ZDACW 37573' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:16:40.904 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:40.914 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:40.914 -07 000000501 INF: FPGA: Recv ZDACR 37573
17-03-18 06:16:40.924 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:40.924 -07 000000606 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:16:41.084 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:41.084 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:16:41.174 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:16:41.174 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:16:41.174 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:41.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:16:41.174 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:16:41.184 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:41.184 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:41.184 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:16:41.184 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 06:16:41.184 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:16:41.284 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:16:41.284 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:16:41.324 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:41.324 -07 000000606 INF: FPGA: Recv YRDPOS 151565
17-03-18 06:16:41.334 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:41.334 -07 000000479 INF: Y Motor: Encoder = 151565 = motor step 118410.2 = 74.0063 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:41.334 -07 000000479 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:16:41.334 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.848 mm, average velocity = 2.114 mm/sec
17-03-18 06:16:41.844 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:42.284 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:42.284 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:16:42.294 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:42.294 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:42.314 -07 000000479 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:42.324 -07 000000479 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:16:42.324 -07 000000479 INF: Y Motor: Moved to 74.0068 after 1451 ms (table move)
17-03-18 06:16:42.324 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171998 mm (DAC = 37573)
17-03-18 06:16:42.324 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.334 -07 000000590 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:16:42.334 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:16:42.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.334 -07 000000606 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:16:42.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.344 -07 000000467 INF: FPGA: Recv ZSGSRD 36062
17-03-18 06:16:42.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.354 -07 000000479 INF: FPGA: Recv ZSGSRD 36070
17-03-18 06:16:42.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.364 -07 000000585 INF: FPGA: Recv ZSGSRD 36069
17-03-18 06:16:42.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.374 -07 000000561 INF: FPGA: Recv ZSGSRD 36074
17-03-18 06:16:42.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:42.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.384 -07 000000590 INF: FPGA: Recv ZSGSRD 36055
17-03-18 06:16:42.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.394 -07 000000501 INF: FPGA: Recv ZSGSRD 36054
17-03-18 06:16:42.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.404 -07 000000467 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:16:42.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:42.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36070
17-03-18 06:16:42.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.424 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:42.424 -07 000000467 INF: FPGA: Recv ZPIEZORD 32043
17-03-18 06:16:42.434 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.9 V.
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36065 (-171.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36054 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 10, negNoise = 10
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: After move to -0.171998, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-18 06:16:42.434 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:42.484 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 06:16:42.484 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:42.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:42.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:42.484 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:42.484 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:42.484 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:42.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:42.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:42.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:42.494 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:42.494 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:42.504 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:16:42.504 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:16:42.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:42.554 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:42.854 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:42.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:42.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:42.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) start.
17-03-18 06:16:42.894 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:42.894 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:42.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:16:42.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1134577368, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:16:42.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:42.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:16:42.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:16:42.994 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:42.994 -07 000000501 INF: Autofocus start
17-03-18 06:16:42.994 -07 000000501 INF: MeasureProfile start
17-03-18 06:16:42.994 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:43.004 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:43.004 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:43.014 -07 000000501 INF: MeasureProfile done
17-03-18 06:16:43.014 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:16:43.014 -07 000000501 INF: Autofocus finished
17-03-18 06:16:43.204 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:43.204 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:43.204 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172006138691602. ----------
17-03-18 06:16:43.204 -07 000000610 INF: Cycle	147	Tile	18	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:43.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36070, sync = True, waitForSettling = True)
17-03-18 06:16:43.214 -07 000000610 INF: Z Motor: Moving to -0.165118 mm, started at -0.172006 mm, distance = 6.89 um
17-03-18 06:16:43.214 -07 000000610 INF: FPGA: Xmit ZDACW 36070\n [Z Motor]
17-03-18 06:16:43.214 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:16:43.224 -07 000000610 INF: FPGA: 'ZDACW 36070' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:16:43.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:43.224 -07 000000479 INF: FPGA: Recv ZDACR 36070
17-03-18 06:16:43.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:43.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.384 -07 000000561 INF: FPGA: Recv ZSGSRD 34991
17-03-18 06:16:43.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.394 -07 000000585 INF: FPGA: Recv ZSGSRD 34992
17-03-18 06:16:43.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.404 -07 000000561 INF: FPGA: Recv ZSGSRD 34993
17-03-18 06:16:43.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.414 -07 000000479 INF: FPGA: Recv ZSGSRD 34996
17-03-18 06:16:43.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.424 -07 000000561 INF: FPGA: Recv ZSGSRD 34992
17-03-18 06:16:43.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.434 -07 000000590 INF: FPGA: Recv ZSGSRD 34990
17-03-18 06:16:43.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.444 -07 000000424 INF: FPGA: Recv ZSGSRD 34989
17-03-18 06:16:43.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.454 -07 000000590 INF: FPGA: Recv ZSGSRD 34996
17-03-18 06:16:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.464 -07 000000561 INF: FPGA: Recv ZSGSRD 34993
17-03-18 06:16:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:43.474 -07 000000590 INF: FPGA: Recv ZSGSRD 34994
17-03-18 06:16:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:43.484 -07 000000424 INF: FPGA: Recv ZPIEZORD 30626
17-03-18 06:16:43.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:43.494 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.504 V. Piezo Error = -9.6 V.
17-03-18 06:16:43.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34993 (-164.3 uncal um), Error = 0.9 uncal um, Median = 34992 (-164.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34989 (-164.2 uncal um), Max = 34996 (-164.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:16:43.494 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34993, posNoise = 3, negNoise = 4
17-03-18 06:16:43.494 -07 000000610 INF: Z Motor: After move to -0.165118, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:43.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:16:43.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:43.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:43.494 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:43.494 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:43.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:43.494 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:43.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:43.494 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:43.494 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:43.494 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:43.494 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:43.494 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:43.504 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:43.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:43.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:16:43.504 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:43.504 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:16:43.504 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:16:43.514 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:16:43.514 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:16:43.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36246 150\n [Camera]
17-03-18 06:16:43.644 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.016692,
17-03-18 06:16:43.714 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:44.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:44.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:44.174 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:44.174 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:44.174 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:16:44.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:44.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:44.174 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:44.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:44.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:16:44.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36246 843
17-03-18 06:16:44.624 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:44.624 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 456 ms.
17-03-18 06:16:44.624 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 456 ms.
17-03-18 06:16:44.624 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:44.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 451 ms.
17-03-18 06:16:44.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 452 ms.
17-03-18 06:16:44.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:44.634 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:44.634 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 462 ms.
17-03-18 06:16:44.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:44.644 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 464 ms.
17-03-18 06:16:44.734 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:44.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:44.734 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:44.734 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:44.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:44.734 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:44.744 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:44.744 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) start.
17-03-18 06:16:44.744 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:44.744 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:16:44.924 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:44.924 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:44.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36246 150' command took 2 ms to send, 1403 ms to get response, and 1409 ms overall
17-03-18 06:16:44.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:16:44.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165125807487776. ------
17-03-18 06:16:44.924 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:44.924 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17142 mm
17-03-18 06:16:44.924 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:44.934 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:44.934 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:16:44.934 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:44.934 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:16:44.934 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:16:44.934 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37447, sync = True, waitForSettling = False)
17-03-18 06:16:44.934 -07 000000474 INF: Z Motor: Moving to -0.171421 mm, started at -0.165126 mm, distance = -6.30 um
17-03-18 06:16:44.944 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:44.944 -07 000000618 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:16:44.954 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:16:44.954 -07 000000501 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:44.954 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:44.954 -07 000000501 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:16:44.954 -07 000000474 INF: FPGA: Xmit ZDACW 37447\n [Z Motor]
17-03-18 06:16:44.954 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:16:44.964 -07 000000474 INF: FPGA: 'ZDACW 37447' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:16:44.964 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:44.964 -07 000000629 INF: FPGA: Recv ZDACR 37447
17-03-18 06:16:44.974 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:44.974 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:44.974 -07 000000474 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:16:45.134 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 575383840, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:16:45.134 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:16:45.134 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:45.134 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:16:45.134 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:16:45.134 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:45.134 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:45.134 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 06:16:45.134 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:45.134 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:16:45.134 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:45.144 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:16:45.344 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:16:45.344 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:16:45.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:45.384 -07 000000629 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:16:45.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:45.394 -07 000000501 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:45.394 -07 000000501 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:16:45.394 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-18 06:16:46.344 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:46.344 -07 000000606 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:16:46.354 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.354 -07 000000501 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:46.374 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:46.374 -07 000000501 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:16:46.374 -07 000000501 INF: Y Motor: Moved to 74.8306 after 1436 ms (table move)
17-03-18 06:16:46.374 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171421 mm (DAC = 37447)
17-03-18 06:16:46.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.374 -07 000000561 INF: FPGA: Recv ZSGSRD 35976
17-03-18 06:16:46.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:46.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.384 -07 000000501 INF: FPGA: Recv ZSGSRD 35971
17-03-18 06:16:46.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.394 -07 000000629 INF: FPGA: Recv ZSGSRD 35974
17-03-18 06:16:46.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35977
17-03-18 06:16:46.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35974
17-03-18 06:16:46.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.424 -07 000000629 INF: FPGA: Recv ZSGSRD 35971
17-03-18 06:16:46.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.434 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35976
17-03-18 06:16:46.444 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.444 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.444 -07 000000467 INF: FPGA: Recv ZSGSRD 35972
17-03-18 06:16:46.454 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35977
17-03-18 06:16:46.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:46.464 -07 000000585 INF: FPGA: Recv ZSGSRD 35967
17-03-18 06:16:46.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.474 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:46.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 31954
17-03-18 06:16:46.484 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.9 V.
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35974 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35974 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35967 (-170.5 uncal um), Max = 35977 (-170.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35974, posNoise = 3, negNoise = 7
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: After move to -0.171421, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-18 06:16:46.484 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:46.534 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 06:16:46.534 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:46.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:46.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:46.534 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:46.534 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:46.534 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:46.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:46.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:16:46.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:46.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:46.544 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:46.544 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:16:46.544 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:16:46.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:46.604 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:46.844 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:46.904 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:46.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:46.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:46.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 06:16:46.934 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:46.944 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:46.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 06:16:47.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:16:47.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:47.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:16:47.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:16:47.044 -07 000000479 INF: Autofocus start
17-03-18 06:16:47.044 -07 000000479 INF: MeasureProfile start
17-03-18 06:16:47.044 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:47.044 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:47.054 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:47.054 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:47.054 -07 000000479 INF: MeasureProfile done
17-03-18 06:16:47.054 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:16:47.054 -07 000000479 INF: Autofocus finished
17-03-18 06:16:47.254 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:47.254 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:47.264 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171427959598844. ----------
17-03-18 06:16:47.264 -07 000000610 INF: Cycle	147	Tile	19	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:47.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35962, sync = True, waitForSettling = True)
17-03-18 06:16:47.264 -07 000000610 INF: Z Motor: Moving to -0.164623 mm, started at -0.171428 mm, distance = 6.80 um
17-03-18 06:16:47.264 -07 000000610 INF: FPGA: Xmit ZDACW 35962\n [Z Motor]
17-03-18 06:16:47.264 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:16:47.274 -07 000000610 INF: FPGA: 'ZDACW 35962' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:47.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:47.274 -07 000000629 INF: FPGA: Recv ZDACR 35962
17-03-18 06:16:47.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:47.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.434 -07 000000561 INF: FPGA: Recv ZSGSRD 34912
17-03-18 06:16:47.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.444 -07 000000629 INF: FPGA: Recv ZSGSRD 34919
17-03-18 06:16:47.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.454 -07 000000581 INF: FPGA: Recv ZSGSRD 34917
17-03-18 06:16:47.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.464 -07 000000585 INF: FPGA: Recv ZSGSRD 34922
17-03-18 06:16:47.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.474 -07 000000467 INF: FPGA: Recv ZSGSRD 34910
17-03-18 06:16:47.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.484 -07 000000618 INF: FPGA: Recv ZSGSRD 34911
17-03-18 06:16:47.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.494 -07 000000611 INF: FPGA: Recv ZSGSRD 34922
17-03-18 06:16:47.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.504 -07 000000479 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:16:47.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.514 -07 000000581 INF: FPGA: Recv ZSGSRD 34916
17-03-18 06:16:47.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:47.524 -07 000000618 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:16:47.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:47.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 30558
17-03-18 06:16:47.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:47.544 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.487 V. Piezo Error = -9.6 V.
17-03-18 06:16:47.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34917 (-163.8 uncal um), Error = 0.8 uncal um, Median = 34918 (-163.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34910 (-163.7 uncal um), Max = 34922 (-163.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:16:47.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34917, posNoise = 5, negNoise = 7
17-03-18 06:16:47.544 -07 000000610 INF: Z Motor: After move to -0.164623, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:47.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:16:47.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:47.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:47.544 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:47.544 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:47.544 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:47.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:47.544 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:47.544 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:47.544 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:47.544 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:47.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:47.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:47.554 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:16:47.554 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:47.554 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:47.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:47.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:16:47.554 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:16:47.564 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:16:47.564 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:16:47.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36139 150\n [Camera]
17-03-18 06:16:47.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:48.214 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:48.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:48.214 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:48.214 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:48.214 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:16:48.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:48.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:48.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:48.224 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:48.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:16:48.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36139 840
17-03-18 06:16:48.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:48.614 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:16:48.614 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:16:48.614 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:48.614 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:48.614 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:16:48.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:16:48.614 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:16:48.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:48.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:16:48.624 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:16:48.774 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:48.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:48.774 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:48.784 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:48.784 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:16:48.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:48.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:48.784 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:48.784 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:48.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:16:48.964 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:16:48.974 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:48.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36139 150' command took 2 ms to send, 1400 ms to get response, and 1409 ms overall
17-03-18 06:16:49.004 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.986717,
17-03-18 06:16:49.184 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:16:49.184 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:16:49.184 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:49.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:16:49.184 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:16:49.184 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:49.184 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:49.194 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:16:49.194 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:16:49.194 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:16:49.194 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:16:49.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:16:49.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:16:49.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:16:49.274 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:16:49.284 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:16:49.284 -07 000000585 INF: FPGA: Recv EMCUR 
17-03-18 06:16:49.294 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:49.294 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:16:49.794 -07 000000611 INF: FPGA: Recv EMIN
17-03-18 06:16:49.794 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:16:49.794 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:16:49.794 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 06:16:49.804 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:49.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:16:49.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164637567365002. ------
17-03-18 06:16:49.804 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:49.804 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 06:16:49.804 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:49.814 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:49.814 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:49.814 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:16:49.814 -07 000000479 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:16:49.814 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:49.814 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30430, sync = True, waitForSettling = False)
17-03-18 06:16:49.814 -07 000000629 INF: Z Motor: Moving to -0.139300 mm, started at -0.164638 mm, distance = 25.34 um
17-03-18 06:16:49.824 -07 000000629 INF: FPGA: Xmit ZDACW 30430\n [Z Motor]
17-03-18 06:16:49.824 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:16:49.834 -07 000000629 INF: FPGA: 'ZDACW 30430' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:16:49.834 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:49.834 -07 000000611 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:16:49.844 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:16:49.844 -07 000000479 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:49.844 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:49.844 -07 000000591 INF: FPGA: Recv ZDACR 30430
17-03-18 06:16:49.844 -07 000000479 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:16:49.844 -07 000000479 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:16:49.854 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:49.854 -07 000000629 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:16:49.854 -07 000000479 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:16:50.014 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:50.014 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:16:51.474 -07 000000579 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:16:51.474 -07 000000479 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1635 ms overall
17-03-18 06:16:51.474 -07 000000479 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:16:51.474 -07 000000479 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:16:51.474 -07 000000479 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.918 mm, average velocity = 9.124 mm/sec
17-03-18 06:16:51.844 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:54.334 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:54.334 -07 000000618 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:16:54.344 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:54.344 -07 000000479 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:54.364 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.000345,
17-03-18 06:16:54.404 -07 000000479 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:54.404 -07 000000479 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:16:54.404 -07 000000479 INF: Y Motor: Moved to 59.9102 after 4591 ms
17-03-18 06:16:54.404 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139300 mm (DAC = 30430)
17-03-18 06:16:54.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.404 -07 000000585 INF: FPGA: Recv ZSGSRD 30977
17-03-18 06:16:54.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:54.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.414 -07 000000590 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:16:54.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:16:54.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.434 -07 000000611 INF: FPGA: Recv ZSGSRD 30969
17-03-18 06:16:54.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.444 -07 000000626 INF: FPGA: Recv ZSGSRD 30979
17-03-18 06:16:54.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.454 -07 000000585 INF: FPGA: Recv ZSGSRD 30981
17-03-18 06:16:54.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.474 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.474 -07 000000579 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:16:54.484 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:54.484 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.484 -07 000000579 INF: FPGA: Recv ZSGSRD 30972
17-03-18 06:16:54.494 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.494 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.494 -07 000000590 INF: FPGA: Recv ZSGSRD 30980
17-03-18 06:16:54.504 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.504 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:54.504 -07 000000591 INF: FPGA: Recv ZSGSRD 30973
17-03-18 06:16:54.514 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.514 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:54.514 -07 000000467 INF: FPGA: Recv ZPIEZORD 26476
17-03-18 06:16:54.524 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.9 V.
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30973 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30963 (-138.4 uncal um), Max = 30981 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30973, posNoise = 8, negNoise = 10
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: After move to -0.139300, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: Settle wait time = 4593 ms, measure time = 115 ms (allowed 150 ms), total time = 4708 ms
17-03-18 06:16:54.524 -07 000000581 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:54.564 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-18 06:16:54.564 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:54.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:54.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:54.564 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:54.564 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:54.564 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:54.564 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:54.564 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:54.564 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:16:54.584 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 06:16:54.584 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:54.594 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:54.594 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:54.594 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:16:54.594 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 06:16:54.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:54.644 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:54.944 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:54.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:54.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:54.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-18 06:16:54.984 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:54.984 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:54.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:16:55.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:16:55.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:55.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:16:55.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:16:55.084 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:55.084 -07 000000579 INF: Image SNR check: start
17-03-18 06:16:55.084 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:55.094 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:55.094 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:55.094 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=113.59]
17-03-18 06:16:55.094 -07 000000579 INF: Autofocus start
17-03-18 06:16:55.094 -07 000000579 INF: MeasureProfile start
17-03-18 06:16:55.114 -07 000000579 INF: MeasureProfile done
17-03-18 06:16:55.114 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:16:55.114 -07 000000579 INF: Autofocus finished
17-03-18 06:16:55.294 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:55.294 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:55.294 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139300474677897. ----------
17-03-18 06:16:55.294 -07 000000610 INF: Cycle	147	Tile	1	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:55.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28937, sync = True, waitForSettling = True)
17-03-18 06:16:55.304 -07 000000610 INF: Z Motor: Moving to -0.132465 mm, started at -0.139300 mm, distance = 6.84 um
17-03-18 06:16:55.304 -07 000000610 INF: FPGA: Xmit ZDACW 28937\n [Z Motor]
17-03-18 06:16:55.304 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:16:55.314 -07 000000610 INF: FPGA: 'ZDACW 28937' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:55.314 -07 000000585 INF: FPGA: Recv ZDACR 28937
17-03-18 06:16:55.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:55.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29912
17-03-18 06:16:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.484 -07 000000585 INF: FPGA: Recv ZSGSRD 29909
17-03-18 06:16:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.494 -07 000000618 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:16:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.504 -07 000000467 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:16:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.514 -07 000000581 INF: FPGA: Recv ZSGSRD 29908
17-03-18 06:16:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.524 -07 000000585 INF: FPGA: Recv ZSGSRD 29916
17-03-18 06:16:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.534 -07 000000618 INF: FPGA: Recv ZSGSRD 29909
17-03-18 06:16:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.544 -07 000000590 INF: FPGA: Recv ZSGSRD 29905
17-03-18 06:16:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.554 -07 000000479 INF: FPGA: Recv ZSGSRD 29901
17-03-18 06:16:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:55.564 -07 000000590 INF: FPGA: Recv ZSGSRD 29910
17-03-18 06:16:55.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:55.574 -07 000000581 INF: FPGA: Recv ZPIEZORD 25312
17-03-18 06:16:55.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:55.584 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 06:16:55.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29909 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29909 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29901 (-131.6 uncal um), Max = 29916 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:16:55.584 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29909, posNoise = 7, negNoise = 8
17-03-18 06:16:55.584 -07 000000610 INF: Z Motor: After move to -0.132465, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:55.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 06:16:55.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:55.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:55.594 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:55.594 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:55.594 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:55.594 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:55.594 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:55.594 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:55.594 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:55.594 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:55.594 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:55.594 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:16:55.594 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:16:55.594 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:55.614 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:16:55.614 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:16:55.614 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-18 06:16:55.614 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:55.614 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:16:55.614 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:55.624 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:16:55.624 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 06:16:55.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29114 150\n [Camera]
17-03-18 06:16:55.834 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:16:56.284 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:16:56.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:16:56.284 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:56.284 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:56.284 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:16:56.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:16:56.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:16:56.294 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:56.294 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:56.294 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:16:56.474 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29114 840
17-03-18 06:16:56.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:16:56.684 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:16:56.684 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:16:56.684 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:56.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:16:56.684 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:16:56.684 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:56.684 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:56.684 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:16:56.684 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:16:56.694 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:16:56.844 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:16:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:16:56.844 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:16:56.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:16:56.844 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:16:56.854 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:16:56.854 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:16:56.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:16:56.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:16:56.854 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:16:56.854 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:16:56.854 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:16:57.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:16:57.044 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:16:57.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29114 150' command took 2 ms to send, 1400 ms to get response, and 1409 ms overall
17-03-18 06:16:57.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:16:57.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132465112959063. ------
17-03-18 06:16:57.044 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:57.044 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13886 mm
17-03-18 06:16:57.044 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:16:57.044 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:16:57.044 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:16:57.044 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30334, sync = True, waitForSettling = False)
17-03-18 06:16:57.044 -07 000000579 INF: Z Motor: Moving to -0.138860 mm, started at -0.132465 mm, distance = -6.40 um
17-03-18 06:16:57.044 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:57.054 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:16:57.054 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:57.054 -07 000000467 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:16:57.064 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:16:57.064 -07 000000590 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:57.064 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:16:57.064 -07 000000590 INF: Y Motor: Moving 1332 steps1
17-03-18 06:16:57.064 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:16:57.074 -07 000000579 INF: FPGA: Xmit ZDACW 30334\n [Z Motor]
17-03-18 06:16:57.074 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:16:57.084 -07 000000579 INF: FPGA: 'ZDACW 30334' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:16:57.084 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:16:57.094 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:57.094 -07 000000467 INF: FPGA: Recv ZDACR 30334
17-03-18 06:16:57.104 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:57.104 -07 000000579 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:16:57.254 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:16:57.254 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:16:57.254 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:57.254 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:16:57.254 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:16:57.254 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:57.254 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:16:57.264 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:16:57.264 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:16:57.264 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:16:57.264 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:16:57.264 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 216 ms overall
17-03-18 06:16:57.454 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:16:57.454 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:16:57.504 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:57.504 -07 000000467 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:16:57.514 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:57.514 -07 000000590 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:57.514 -07 000000590 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:16:57.514 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 06:16:58.464 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:16:58.464 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:16:58.474 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:58.474 -07 000000590 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:16:58.504 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:16:58.504 -07 000000590 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:16:58.504 -07 000000590 INF: Y Motor: Moved to 60.7324 after 1457 ms (table move)
17-03-18 06:16:58.504 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138860 mm (DAC = 30334)
17-03-18 06:16:58.504 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.514 -07 000000611 INF: FPGA: Recv ZSGSRD 30909
17-03-18 06:16:58.514 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:16:58.514 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.514 -07 000000479 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:16:58.524 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:16:58.524 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.524 -07 000000467 INF: FPGA: Recv ZSGSRD 30901
17-03-18 06:16:58.534 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.534 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.534 -07 000000629 INF: FPGA: Recv ZSGSRD 30897
17-03-18 06:16:58.544 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:16:58.544 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.544 -07 000000579 INF: FPGA: Recv ZSGSRD 30892
17-03-18 06:16:58.554 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.554 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.554 -07 000000581 INF: FPGA: Recv ZSGSRD 30913
17-03-18 06:16:58.564 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.564 -07 000000585 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:16:58.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.574 -07 000000629 INF: FPGA: Recv ZSGSRD 30911
17-03-18 06:16:58.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.584 -07 000000611 INF: FPGA: Recv ZSGSRD 30914
17-03-18 06:16:58.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:58.594 -07 000000590 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:16:58.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.604 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:58.604 -07 000000581 INF: FPGA: Recv ZPIEZORD 26631
17-03-18 06:16:58.614 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.4 V.
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30892 (-138.0 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 8, negNoise = 14
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: After move to -0.138860, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: Settle wait time = 1460 ms, measure time = 102 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:16:58.614 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:16:58.664 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:16:58.664 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:16:58.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:58.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:58.664 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:58.664 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:58.664 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:16:58.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:58.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:16:58.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:16:58.674 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:16:58.674 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:16:58.684 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:16:58.684 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:16:58.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:16:58.734 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:16:59.034 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:16:59.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:16:59.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:16:59.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:16:59.064 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:16:59.074 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:16:59.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:16:59.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:16:59.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:16:59.164 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:16:59.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:16:59.174 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:16:59.174 -07 000000501 INF: Autofocus start
17-03-18 06:16:59.174 -07 000000501 INF: MeasureProfile start
17-03-18 06:16:59.174 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:16:59.184 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:16:59.184 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:16:59.184 -07 000000501 INF: MeasureProfile done
17-03-18 06:16:59.184 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:16:59.184 -07 000000501 INF: Autofocus finished
17-03-18 06:16:59.384 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:16:59.384 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:16:59.384 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138870052464399. ----------
17-03-18 06:16:59.384 -07 000000610 INF: Cycle	147	Tile	2	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:16:59.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28842, sync = True, waitForSettling = True)
17-03-18 06:16:59.394 -07 000000610 INF: Z Motor: Moving to -0.132030 mm, started at -0.138870 mm, distance = 6.84 um
17-03-18 06:16:59.394 -07 000000610 INF: FPGA: Xmit ZDACW 28842\n [Z Motor]
17-03-18 06:16:59.394 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:16:59.404 -07 000000610 INF: FPGA: 'ZDACW 28842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:16:59.414 -07 000000611 INF: FPGA: Recv ZDACR 28842
17-03-18 06:16:59.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:16:59.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:16:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.574 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:16:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:16:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.594 -07 000000618 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:16:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:16:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.604 -07 000000467 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:16:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.614 -07 000000606 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:16:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:16:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:16:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.644 -07 000000501 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:16:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.654 -07 000000467 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:16:59.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:16:59.664 -07 000000606 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:16:59.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:16:59.674 -07 000000618 INF: FPGA: Recv ZPIEZORD 25228
17-03-18 06:16:59.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:16:59.684 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.1 V.
17-03-18 06:16:59.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29842 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29841 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29851 (-131.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:16:59.684 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29842, posNoise = 9, negNoise = 8
17-03-18 06:16:59.684 -07 000000610 INF: Z Motor: After move to -0.132030, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:16:59.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 06:16:59.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:16:59.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:16:59.684 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:16:59.684 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:16:59.684 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:16:59.684 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:16:59.684 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:16:59.684 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:16:59.684 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:16:59.684 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:16:59.684 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:16:59.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:16:59.694 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:16:59.694 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:16:59.694 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 06:16:59.694 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:16:59.704 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:16:59.704 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:16:59.704 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:16:59.704 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:16:59.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29018 150\n [Camera]
17-03-18 06:16:59.734 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.003063,
17-03-18 06:16:59.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:00.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:00.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:00.364 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:00.364 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:00.364 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:17:00.364 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:00.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:00.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:00.374 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:00.374 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:17:00.554 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 840
17-03-18 06:17:00.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:00.764 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:17:00.764 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:17:00.764 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:00.764 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:00.774 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:17:00.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:17:00.774 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:17:00.774 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:00.774 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:00.784 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:17:00.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:00.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:00.924 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:00.924 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:00.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:17:00.924 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:00.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:00.934 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:00.934 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:00.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:17:01.114 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:01.114 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:01.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29018 150' command took 2 ms to send, 1398 ms to get response, and 1408 ms overall
17-03-18 06:17:01.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:01.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132034690745565. ------
17-03-18 06:17:01.124 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:01.124 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13886 mm
17-03-18 06:17:01.124 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:01.124 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:01.124 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30334, sync = True, waitForSettling = False)
17-03-18 06:17:01.134 -07 000000579 INF: Z Motor: Moving to -0.138860 mm, started at -0.132035 mm, distance = -6.83 um
17-03-18 06:17:01.134 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:01.134 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:17:01.134 -07 000000479 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:17:01.134 -07 000000579 INF: FPGA: Xmit ZDACW 30334\n [Z Motor]
17-03-18 06:17:01.134 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:17:01.144 -07 000000579 INF: FPGA: 'ZDACW 30334' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:01.144 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:01.154 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:01.154 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:17:01.164 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:01.164 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:17:01.164 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:01.164 -07 000000479 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:01.164 -07 000000479 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:17:01.164 -07 000000611 INF: FPGA: Recv ZDACR 30334
17-03-18 06:17:01.174 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:01.174 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:17:01.174 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:01.324 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:17:01.324 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:17:01.324 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:01.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:17:01.324 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:17:01.324 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:01.324 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:01.324 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:17:01.324 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:17:01.334 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:17:01.344 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:01.344 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 06:17:01.544 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:17:01.544 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:17:01.604 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:01.604 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:17:01.614 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:01.614 -07 000000479 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:01.614 -07 000000479 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:17:01.614 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 06:17:01.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:02.564 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:02.564 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:17:02.574 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:02.574 -07 000000479 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:02.604 -07 000000479 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:02.604 -07 000000479 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:02.604 -07 000000479 INF: Y Motor: Moved to 61.5630 after 1471 ms (table move)
17-03-18 06:17:02.604 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138860 mm (DAC = 30334)
17-03-18 06:17:02.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.604 -07 000000501 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:17:02.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:02.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.614 -07 000000474 INF: FPGA: Recv ZSGSRD 30909
17-03-18 06:17:02.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.624 -07 000000585 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:17:02.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.634 -07 000000579 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:17:02.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.644 -07 000000606 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:17:02.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.654 -07 000000590 INF: FPGA: Recv ZSGSRD 30909
17-03-18 06:17:02.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.664 -07 000000501 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:17:02.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.674 -07 000000474 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:17:02.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.684 -07 000000479 INF: FPGA: Recv ZSGSRD 30912
17-03-18 06:17:02.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.694 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:02.694 -07 000000611 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:17:02.704 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.704 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:02.704 -07 000000579 INF: FPGA: Recv ZPIEZORD 26672
17-03-18 06:17:02.714 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30907 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30906 (-138.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30912 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30907, posNoise = 5, negNoise = 4
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: After move to -0.138860, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: Settle wait time = 1475 ms, measure time = 104 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:17:02.714 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:02.764 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:17:02.764 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:02.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:02.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:02.764 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:02.764 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:02.764 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:02.764 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:02.764 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:02.764 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:02.774 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:02.774 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:02.784 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:17:02.784 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:17:02.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:02.834 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:03.134 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:03.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:03.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:03.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:17:03.174 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:03.174 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:03.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:17:03.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:17:03.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:03.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:03.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:17:03.274 -07 000000606 INF: Autofocus start
17-03-18 06:17:03.274 -07 000000606 INF: MeasureProfile start
17-03-18 06:17:03.274 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:03.274 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:03.284 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:03.284 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:03.284 -07 000000606 INF: MeasureProfile done
17-03-18 06:17:03.284 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:17:03.284 -07 000000606 INF: Autofocus finished
17-03-18 06:17:03.484 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:03.484 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:03.484 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138876476676541. ----------
17-03-18 06:17:03.494 -07 000000610 INF: Cycle	147	Tile	3	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:03.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28841, sync = True, waitForSettling = True)
17-03-18 06:17:03.494 -07 000000610 INF: Z Motor: Moving to -0.132026 mm, started at -0.138876 mm, distance = 6.85 um
17-03-18 06:17:03.494 -07 000000610 INF: FPGA: Xmit ZDACW 28841\n [Z Motor]
17-03-18 06:17:03.494 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:17:03.504 -07 000000610 INF: FPGA: 'ZDACW 28841' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:03.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:03.504 -07 000000590 INF: FPGA: Recv ZDACR 28841
17-03-18 06:17:03.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.664 -07 000000579 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:17:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.674 -07 000000579 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:17:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:17:03.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.694 -07 000000474 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:17:03.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.704 -07 000000590 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:17:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.714 -07 000000585 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:17:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:17:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.734 -07 000000606 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:17:03.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.744 -07 000000474 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:17:03.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:03.754 -07 000000606 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:17:03.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:03.764 -07 000000579 INF: FPGA: Recv ZPIEZORD 25284
17-03-18 06:17:03.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:03.774 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.0 V.
17-03-18 06:17:03.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29841 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29837 (-131.2 uncal um), Max = 29846 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:03.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 5, negNoise = 4
17-03-18 06:17:03.774 -07 000000610 INF: Z Motor: After move to -0.132026, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:03.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:17:03.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:03.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:03.774 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:03.774 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:03.774 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:03.774 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:03.774 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:03.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:03.774 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:03.774 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:03.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:03.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:03.784 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:03.784 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:03.784 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:03.784 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:03.794 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:03.794 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:03.794 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:17:03.794 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:03.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29018 150\n [Camera]
17-03-18 06:17:03.994 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:04.454 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:04.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:04.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:04.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:04.454 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:04.454 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:04.454 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:17:04.454 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:04.454 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:04.454 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:17:04.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 840
17-03-18 06:17:04.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:04.834 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:17:04.834 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:17:04.834 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:04.834 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:17:04.834 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:17:04.834 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:04.834 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:17:04.834 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:17:04.834 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:17:04.844 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:17:05.014 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:05.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:05.014 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:05.014 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:05.014 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:17:05.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:05.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:05.014 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:05.164 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:05.164 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) start.
17-03-18 06:17:05.164 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.990831,
17-03-18 06:17:05.204 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:05.204 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:05.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29018 150' command took 2 ms to send, 1405 ms to get response, and 1410 ms overall
17-03-18 06:17:05.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:05.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132028266533424. ------
17-03-18 06:17:05.214 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:05.214 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13851 mm
17-03-18 06:17:05.214 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:05.214 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:05.214 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:17:05.214 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:17:05.214 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30257, sync = True, waitForSettling = False)
17-03-18 06:17:05.214 -07 000000579 INF: Z Motor: Moving to -0.138508 mm, started at -0.132028 mm, distance = -6.48 um
17-03-18 06:17:05.224 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:05.224 -07 000000579 INF: FPGA: Xmit ZDACW 30257\n [Z Motor]
17-03-18 06:17:05.224 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:17:05.234 -07 000000579 INF: FPGA: 'ZDACW 30257' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:17:05.234 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:05.234 -07 000000474 INF: FPGA: Recv YRDPOS 126082
17-03-18 06:17:05.244 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:17:05.244 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:05.244 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:05.244 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:05.244 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:17:05.254 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:05.254 -07 000000474 INF: FPGA: Recv ZDACR 30257
17-03-18 06:17:05.264 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:05.264 -07 000000579 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:17:05.264 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:05.424 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 06:17:05.424 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:17:05.424 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:05.434 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:17:05.434 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 06:17:05.444 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:05.444 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 06:17:05.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:17:05.554 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:17:05.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:05.554 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:05.564 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 548 ms.
17-03-18 06:17:05.634 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:17:05.634 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:17:05.694 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:05.694 -07 000000424 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:17:05.704 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:05.704 -07 000000561 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:05.704 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:17:05.704 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.147 mm/sec
17-03-18 06:17:06.654 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:06.654 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:17:06.664 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:06.664 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:06.694 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:06.694 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:17:06.694 -07 000000561 INF: Y Motor: Moved to 62.3950 after 1480 ms (table move)
17-03-18 06:17:06.694 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138508 mm (DAC = 30257)
17-03-18 06:17:06.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.704 -07 000000611 INF: FPGA: Recv ZSGSRD 30855
17-03-18 06:17:06.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:17:06.704 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.704 -07 000000611 INF: FPGA: Recv ZSGSRD 30844
17-03-18 06:17:06.714 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.714 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.714 -07 000000579 INF: FPGA: Recv ZSGSRD 30848
17-03-18 06:17:06.724 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.724 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.724 -07 000000382 INF: FPGA: Recv ZSGSRD 30847
17-03-18 06:17:06.734 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.734 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.734 -07 000000474 INF: FPGA: Recv ZSGSRD 30849
17-03-18 06:17:06.744 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.744 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.744 -07 000000382 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:17:06.754 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.754 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.754 -07 000000606 INF: FPGA: Recv ZSGSRD 30849
17-03-18 06:17:06.764 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.764 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.764 -07 000000424 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:17:06.774 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.774 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.774 -07 000000591 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:17:06.784 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.784 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:06.784 -07 000000606 INF: FPGA: Recv ZSGSRD 30844
17-03-18 06:17:06.794 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.794 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:06.794 -07 000000424 INF: FPGA: Recv ZPIEZORD 26625
17-03-18 06:17:06.804 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.3 V.
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30850 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30849 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30844 (-137.7 uncal um), Max = 30856 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30850, posNoise = 6, negNoise = 6
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: After move to -0.138508, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: Settle wait time = 1483 ms, measure time = 103 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:17:06.804 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:06.844 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:06.854 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:17:06.854 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:06.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:06.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:06.854 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:06.854 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:06.854 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:06.854 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:06.864 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:06.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:06.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:06.864 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:06.864 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:06.864 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:17:06.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:06.914 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:07.214 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:07.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:07.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:07.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:17:07.254 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:07.254 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:07.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:17:07.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:17:07.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:07.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:07.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:17:07.354 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:07.354 -07 000000479 INF: Autofocus start
17-03-18 06:17:07.354 -07 000000479 INF: MeasureProfile start
17-03-18 06:17:07.354 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:07.364 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:07.364 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:07.364 -07 000000479 INF: MeasureProfile done
17-03-18 06:17:07.364 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:17:07.364 -07 000000479 INF: Autofocus finished
17-03-18 06:17:07.564 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:07.564 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:07.564 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138510296584461. ----------
17-03-18 06:17:07.564 -07 000000610 INF: Cycle	147	Tile	4	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:07.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-18 06:17:07.574 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138510 mm, distance = 6.84 um
17-03-18 06:17:07.574 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-18 06:17:07.574 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:17:07.584 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:07.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:07.584 -07 000000581 INF: FPGA: Recv ZDACR 28764
17-03-18 06:17:07.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:07.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.744 -07 000000561 INF: FPGA: Recv ZSGSRD 29780
17-03-18 06:17:07.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:07.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.754 -07 000000424 INF: FPGA: Recv ZSGSRD 29789
17-03-18 06:17:07.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.764 -07 000000382 INF: FPGA: Recv ZSGSRD 29789
17-03-18 06:17:07.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.774 -07 000000382 INF: FPGA: Recv ZSGSRD 29787
17-03-18 06:17:07.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.784 -07 000000479 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:17:07.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:17:07.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.804 -07 000000382 INF: FPGA: Recv ZSGSRD 29787
17-03-18 06:17:07.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.814 -07 000000606 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:17:07.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.824 -07 000000561 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:17:07.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:07.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:17:07.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:07.844 -07 000000581 INF: FPGA: Recv ZPIEZORD 25248
17-03-18 06:17:07.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:07.854 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -10.0 V.
17-03-18 06:17:07.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:17:07.854 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 11, negNoise = 6
17-03-18 06:17:07.854 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:07.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:17:07.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:07.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:07.854 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:07.854 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:07.854 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:07.854 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:07.854 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:07.854 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:07.854 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:17:07.854 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:07.854 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:07.854 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:07.864 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:07.864 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:07.864 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:07.864 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:07.874 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:17:07.874 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:17:07.874 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:17:07.874 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:07.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28941 150\n [Camera]
17-03-18 06:17:08.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:08.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:08.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:08.534 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:08.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:08.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:08.534 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:08.544 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:08.544 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:17:08.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:08.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:17:08.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 840
17-03-18 06:17:08.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:08.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:17:08.934 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:17:08.934 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:08.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:17:08.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:17:08.944 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:08.944 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:08.944 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:17:08.944 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:08.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 06:17:09.094 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:09.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:09.094 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:09.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:09.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:09.094 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:09.214 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:09.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:17:09.214 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:09.214 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) start.
17-03-18 06:17:09.284 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:09.284 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:09.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28941 150' command took 2 ms to send, 1403 ms to get response, and 1410 ms overall
17-03-18 06:17:09.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:09.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131674934865627. ------
17-03-18 06:17:09.284 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:09.284 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13836 mm
17-03-18 06:17:09.284 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:09.294 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:17:09.294 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 06:17:09.294 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:09.294 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:17:09.294 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:09.294 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30224, sync = True, waitForSettling = False)
17-03-18 06:17:09.294 -07 000000561 INF: Z Motor: Moving to -0.138357 mm, started at -0.131675 mm, distance = -6.68 um
17-03-18 06:17:09.294 -07 000000382 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:17:09.304 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:09.304 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:09.304 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:09.304 -07 000000581 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:17:09.304 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:09.314 -07 000000561 INF: FPGA: Xmit ZDACW 30224\n [Z Motor]
17-03-18 06:17:09.314 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:17:09.324 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:09.324 -07 000000561 INF: FPGA: 'ZDACW 30224' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:17:09.334 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:09.334 -07 000000382 INF: FPGA: Recv ZDACR 30224
17-03-18 06:17:09.344 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:09.344 -07 000000561 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:17:09.504 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:09.504 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 06:17:09.614 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:17:09.614 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:17:09.614 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:09.614 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 575383840, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:17:09.614 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:17:09.614 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:09.624 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:09.624 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 06:17:09.624 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:09.624 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 06:17:09.694 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:17:09.694 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:09.744 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:09.754 -07 000000561 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:17:09.754 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:17:09.754 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:09.754 -07 000000581 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:17:09.754 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 06:17:10.534 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.988112,
17-03-18 06:17:10.704 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:10.704 -07 000000479 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:17:10.714 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:10.714 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:10.744 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:10.744 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:10.744 -07 000000581 INF: Y Motor: Moved to 63.2231 after 1450 ms (table move)
17-03-18 06:17:10.744 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138357 mm (DAC = 30224)
17-03-18 06:17:10.744 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.744 -07 000000382 INF: FPGA: Recv ZSGSRD 30826
17-03-18 06:17:10.754 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:10.754 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.754 -07 000000501 INF: FPGA: Recv ZSGSRD 30832
17-03-18 06:17:10.764 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.764 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.764 -07 000000479 INF: FPGA: Recv ZSGSRD 30834
17-03-18 06:17:10.774 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.774 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.774 -07 000000606 INF: FPGA: Recv ZSGSRD 30832
17-03-18 06:17:10.784 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.784 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.784 -07 000000479 INF: FPGA: Recv ZSGSRD 30826
17-03-18 06:17:10.794 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.794 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.794 -07 000000581 INF: FPGA: Recv ZSGSRD 30827
17-03-18 06:17:10.804 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.804 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.804 -07 000000479 INF: FPGA: Recv ZSGSRD 30819
17-03-18 06:17:10.814 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.814 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30827
17-03-18 06:17:10.824 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.824 -07 000000591 INF: FPGA: Recv ZSGSRD 30826
17-03-18 06:17:10.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.834 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:10.834 -07 000000581 INF: FPGA: Recv ZSGSRD 30823
17-03-18 06:17:10.844 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.844 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:10.844 -07 000000479 INF: FPGA: Recv ZPIEZORD 26622
17-03-18 06:17:10.854 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.2 V.
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30827 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30819 (-137.5 uncal um), Max = 30834 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30827, posNoise = 7, negNoise = 8
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: After move to -0.138357, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-18 06:17:10.854 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:10.904 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 06:17:10.904 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:10.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:10.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:10.904 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:10.904 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:10.904 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:10.904 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:10.904 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:10.904 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:10.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:10.914 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:10.924 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:17:10.924 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:17:10.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:10.974 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 06:17:11.274 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 06:17:11.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 06:17:11.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:11.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:17:11.304 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:11.314 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:11.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:17:11.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:17:11.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:11.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:11.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:17:11.414 -07 000000591 INF: Autofocus start
17-03-18 06:17:11.414 -07 000000591 INF: MeasureProfile start
17-03-18 06:17:11.414 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:11.414 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:11.424 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:17:11.424 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:11.424 -07 000000591 INF: MeasureProfile done
17-03-18 06:17:11.424 -07 000000591 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:17:11.424 -07 000000591 INF: Autofocus finished
17-03-18 06:17:11.624 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:11.624 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:11.624 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.1383625397052. ----------
17-03-18 06:17:11.624 -07 000000610 INF: Cycle	147	Tile	5	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:11.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28731, sync = True, waitForSettling = True)
17-03-18 06:17:11.634 -07 000000610 INF: Z Motor: Moving to -0.131522 mm, started at -0.138363 mm, distance = 6.84 um
17-03-18 06:17:11.634 -07 000000610 INF: FPGA: Xmit ZDACW 28731\n [Z Motor]
17-03-18 06:17:11.634 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:17:11.644 -07 000000610 INF: FPGA: 'ZDACW 28731' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:11.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:11.644 -07 000000501 INF: FPGA: Recv ZDACR 28731
17-03-18 06:17:11.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.804 -07 000000591 INF: FPGA: Recv ZSGSRD 29761
17-03-18 06:17:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:11.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.814 -07 000000479 INF: FPGA: Recv ZSGSRD 29769
17-03-18 06:17:11.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.824 -07 000000591 INF: FPGA: Recv ZSGSRD 29760
17-03-18 06:17:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.834 -07 000000591 INF: FPGA: Recv ZSGSRD 29763
17-03-18 06:17:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29766
17-03-18 06:17:11.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:11.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.854 -07 000000591 INF: FPGA: Recv ZSGSRD 29759
17-03-18 06:17:11.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.864 -07 000000561 INF: FPGA: Recv ZSGSRD 29763
17-03-18 06:17:11.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29760
17-03-18 06:17:11.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.884 -07 000000501 INF: FPGA: Recv ZSGSRD 29762
17-03-18 06:17:11.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:11.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29767
17-03-18 06:17:11.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:11.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 25223
17-03-18 06:17:11.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:11.914 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -10.0 V.
17-03-18 06:17:11.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29763 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29762 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29759 (-130.7 uncal um), Max = 29769 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:11.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29763, posNoise = 6, negNoise = 4
17-03-18 06:17:11.914 -07 000000610 INF: Z Motor: After move to -0.131522, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:11.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:17:11.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:11.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:11.914 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:11.914 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:11.914 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:11.924 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:11.924 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:11.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:11.924 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:11.924 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:11.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:17:11.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:11.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:11.924 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:11.924 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:11.924 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:11.934 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:17:11.934 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:11.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:11.934 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:11.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28908 150\n [Camera]
17-03-18 06:17:12.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:12.594 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:12.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:12.594 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:12.594 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:12.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:12.594 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:12.594 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:12.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:17:12.604 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:12.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:17:12.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28908 840
17-03-18 06:17:12.934 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:12.964 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:17:12.974 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:17:12.974 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:12.974 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:12.974 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:17:12.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:17:12.974 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:17:12.974 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:12.974 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:12.984 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:17:13.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:13.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:13.154 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:13.154 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:13.154 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:17:13.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:13.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:13.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:13.154 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:13.154 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:17:13.344 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:13.344 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:13.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28908 150' command took 2 ms to send, 1405 ms to get response, and 1409 ms overall
17-03-18 06:17:13.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:13.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131527177986366. ------
17-03-18 06:17:13.354 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:13.354 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13790 mm
17-03-18 06:17:13.354 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:13.354 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:13.354 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:17:13.354 -07 000000581 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:17:13.354 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30125, sync = True, waitForSettling = False)
17-03-18 06:17:13.354 -07 000000591 INF: Z Motor: Moving to -0.137903 mm, started at -0.131527 mm, distance = -6.38 um
17-03-18 06:17:13.364 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:13.364 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:13.364 -07 000000561 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:17:13.374 -07 000000591 INF: FPGA: Xmit ZDACW 30125\n [Z Motor]
17-03-18 06:17:13.374 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:17:13.374 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:13.374 -07 000000581 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:13.374 -07 000000581 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:17:13.374 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:17:13.384 -07 000000591 INF: FPGA: 'ZDACW 30125' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:17:13.384 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:13.394 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:13.404 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:13.404 -07 000000424 INF: FPGA: Recv ZDACR 30125
17-03-18 06:17:13.414 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:13.414 -07 000000591 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:17:13.554 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:17:13.554 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:17:13.554 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:13.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:17:13.554 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:13.554 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:13.554 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:13.564 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:17:13.564 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:17:13.564 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:17:13.584 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:13.584 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:17:13.774 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:17:13.774 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:17:13.824 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:13.824 -07 000000479 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:17:13.834 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:13.834 -07 000000581 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:13.834 -07 000000581 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:17:13.834 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.839 mm, average velocity = 2.099 mm/sec
17-03-18 06:17:14.784 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:14.784 -07 000000561 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:17:14.794 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:14.794 -07 000000581 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:14.824 -07 000000581 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:14.824 -07 000000581 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:14.824 -07 000000581 INF: Y Motor: Moved to 64.0562 after 1465 ms (table move)
17-03-18 06:17:14.824 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137903 mm (DAC = 30125)
17-03-18 06:17:14.824 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.824 -07 000000479 INF: FPGA: Recv ZSGSRD 30761
17-03-18 06:17:14.834 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:17:14.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.834 -07 000000591 INF: FPGA: Recv ZSGSRD 30756
17-03-18 06:17:14.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.844 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.844 -07 000000590 INF: FPGA: Recv ZSGSRD 30755
17-03-18 06:17:14.854 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.854 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.854 -07 000000424 INF: FPGA: Recv ZSGSRD 30754
17-03-18 06:17:14.864 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.864 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.864 -07 000000501 INF: FPGA: Recv ZSGSRD 30754
17-03-18 06:17:14.874 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.874 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.874 -07 000000424 INF: FPGA: Recv ZSGSRD 30759
17-03-18 06:17:14.884 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.884 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.884 -07 000000501 INF: FPGA: Recv ZSGSRD 30761
17-03-18 06:17:14.894 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.894 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30760
17-03-18 06:17:14.904 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.904 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.904 -07 000000606 INF: FPGA: Recv ZSGSRD 30756
17-03-18 06:17:14.914 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.914 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:14.914 -07 000000581 INF: FPGA: Recv ZSGSRD 30759
17-03-18 06:17:14.924 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.924 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:14.924 -07 000000479 INF: FPGA: Recv ZPIEZORD 26532
17-03-18 06:17:14.934 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.3 V.
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30758 (-137.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30754 (-137.1 uncal um), Max = 30761 (-137.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 3, negNoise = 4
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: After move to -0.137903, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:17:14.934 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:14.984 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:17:14.984 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:14.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:14.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:14.984 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:14.984 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:14.984 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:14.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:14.984 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:14.984 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:14.994 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:14.994 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:15.004 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:17:15.004 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:17:15.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:15.054 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:15.354 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:15.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:15.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:15.474 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:15.474 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:15.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 452 ms to get response, and 463 ms overall
17-03-18 06:17:15.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 06:17:15.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:17:15.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:15.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:15.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 237 ms.
17-03-18 06:17:15.674 -07 000000501 INF: Autofocus start
17-03-18 06:17:15.674 -07 000000501 INF: MeasureProfile start
17-03-18 06:17:15.674 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:15.674 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:15.684 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:15.684 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:15.684 -07 000000501 INF: MeasureProfile done
17-03-18 06:17:15.684 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:17:15.684 -07 000000501 INF: Autofocus finished
17-03-18 06:17:15.884 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:15.884 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:15.884 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137919269067419. ----------
17-03-18 06:17:15.884 -07 000000610 INF: Cycle	147	Tile	6	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:15.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28649, sync = True, waitForSettling = True)
17-03-18 06:17:15.894 -07 000000610 INF: Z Motor: Moving to -0.131147 mm, started at -0.137919 mm, distance = 6.77 um
17-03-18 06:17:15.904 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.008536,
17-03-18 06:17:15.914 -07 000000610 INF: FPGA: Xmit ZDACW 28649\n [Z Motor]
17-03-18 06:17:15.914 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:17:15.924 -07 000000610 INF: FPGA: 'ZDACW 28649' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:15.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:15.944 -07 000000501 INF: FPGA: Recv ZDACR 28649
17-03-18 06:17:15.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:15.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:16.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.104 -07 000000382 INF: FPGA: Recv ZSGSRD 29708
17-03-18 06:17:16.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.114 -07 000000591 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:17:16.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.124 -07 000000629 INF: FPGA: Recv ZSGSRD 29704
17-03-18 06:17:16.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.134 -07 000000479 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:17:16.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29705
17-03-18 06:17:16.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.154 -07 000000561 INF: FPGA: Recv ZSGSRD 29709
17-03-18 06:17:16.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.164 -07 000000629 INF: FPGA: Recv ZSGSRD 29703
17-03-18 06:17:16.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.174 -07 000000590 INF: FPGA: Recv ZSGSRD 29707
17-03-18 06:17:16.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29703
17-03-18 06:17:16.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:16.194 -07 000000611 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:17:16.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:16.204 -07 000000501 INF: FPGA: Recv ZPIEZORD 25148
17-03-18 06:17:16.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:16.214 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -10.0 V.
17-03-18 06:17:16.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29705 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29701 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:16.214 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29705, posNoise = 4, negNoise = 4
17-03-18 06:17:16.214 -07 000000610 INF: Z Motor: After move to -0.131147, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:16.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 06:17:16.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:16.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:16.214 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:16.214 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:16.214 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:16.214 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:16.214 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:16.214 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:16.214 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:16.214 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:16.214 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:16.214 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:16.224 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:16.224 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:16.224 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:16.224 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:16.234 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:17:16.234 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:16.234 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:17:16.234 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:16.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28826 150\n [Camera]
17-03-18 06:17:16.444 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:16.844 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:16.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:16.904 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:16.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:16.904 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:16.904 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:16.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:16.904 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:16.914 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:16.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:17:16.914 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:16.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:17:17.094 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28826 840
17-03-18 06:17:17.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:17.284 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:17:17.284 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:17:17.284 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:17.284 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:17.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:17:17.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:17:17.284 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:17.294 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:17.294 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:17:17.294 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:17:17.464 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:17.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:17.464 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:17.474 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:17.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:17.474 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:17.474 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:17.474 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:17:17.474 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:17.474 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:17:17.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:17.654 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:17.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28826 150' command took 2 ms to send, 1399 ms to get response, and 1425 ms overall
17-03-18 06:17:17.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:17.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131154573682144. ------
17-03-18 06:17:17.664 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:17.664 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13777 mm
17-03-18 06:17:17.664 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:17.664 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:17.664 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:17:17.664 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:17:17.664 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30096, sync = True, waitForSettling = False)
17-03-18 06:17:17.664 -07 000000424 INF: Z Motor: Moving to -0.137771 mm, started at -0.131155 mm, distance = -6.62 um
17-03-18 06:17:17.674 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:17.674 -07 000000424 INF: FPGA: Xmit ZDACW 30096\n [Z Motor]
17-03-18 06:17:17.674 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:17:17.684 -07 000000424 INF: FPGA: 'ZDACW 30096' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:17:17.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:17.684 -07 000000618 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:17:17.694 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:17.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:17:17.694 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:17.814 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:17.814 -07 000000611 INF: FPGA: Recv ZDACR 30096
17-03-18 06:17:17.814 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:17.814 -07 000000382 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:17:17.824 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 06:17:17.824 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:17.824 -07 000000424 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 06:17:17.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:17:17.874 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:17:17.874 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:17.874 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:17:17.874 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:17:17.874 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:17.874 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:17.874 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:17:17.874 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:17.884 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:17:17.894 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:17.894 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 83 ms to get response, and 222 ms overall
17-03-18 06:17:18.194 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:17:18.194 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:17:18.254 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:18.254 -07 000000590 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:17:18.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:18.264 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:18.264 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:17:18.264 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.836 mm, average velocity = 2.173 mm/sec
17-03-18 06:17:19.214 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:19.214 -07 000000611 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:17:19.224 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:19.224 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:19.254 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:19.254 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:19.254 -07 000000382 INF: Y Motor: Moved to 64.8779 after 1585 ms (table move)
17-03-18 06:17:19.254 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137771 mm (DAC = 30096)
17-03-18 06:17:19.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.254 -07 000000561 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:17:19.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:19.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.264 -07 000000618 INF: FPGA: Recv ZSGSRD 30749
17-03-18 06:17:19.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.274 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.274 -07 000000561 INF: FPGA: Recv ZSGSRD 30736
17-03-18 06:17:19.284 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.284 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.284 -07 000000629 INF: FPGA: Recv ZSGSRD 30737
17-03-18 06:17:19.294 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.294 -07 000000561 INF: FPGA: Recv ZSGSRD 30732
17-03-18 06:17:19.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.304 -07 000000590 INF: FPGA: Recv ZSGSRD 30730
17-03-18 06:17:19.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.314 -07 000000629 INF: FPGA: Recv ZSGSRD 30733
17-03-18 06:17:19.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.324 -07 000000590 INF: FPGA: Recv ZSGSRD 30729
17-03-18 06:17:19.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.334 -07 000000629 INF: FPGA: Recv ZSGSRD 30742
17-03-18 06:17:19.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:19.344 -07 000000611 INF: FPGA: Recv ZSGSRD 30740
17-03-18 06:17:19.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.354 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:19.354 -07 000000561 INF: FPGA: Recv ZPIEZORD 26523
17-03-18 06:17:19.364 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.3 V.
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30729 (-136.9 uncal um), Max = 30749 (-137.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 12, negNoise = 8
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: After move to -0.137771, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: Settle wait time = 1588 ms, measure time = 104 ms (allowed 150 ms), total time = 1692 ms
17-03-18 06:17:19.364 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:19.414 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 06:17:19.414 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:19.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:19.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:19.424 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:19.424 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:19.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:19.424 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:19.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:19.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:19.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:19.424 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:19.434 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:17:19.434 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:17:19.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:19.484 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:19.784 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:19.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:19.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:19.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 601069512, 0x0, 559484976) start.
17-03-18 06:17:19.824 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:19.824 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:19.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:17:19.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 601069512, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:17:19.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:19.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:19.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:17:19.924 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:19.924 -07 000000591 INF: Autofocus start
17-03-18 06:17:19.924 -07 000000591 INF: MeasureProfile start
17-03-18 06:17:19.924 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:19.934 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:19.934 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:19.934 -07 000000591 INF: MeasureProfile done
17-03-18 06:17:19.934 -07 000000591 INF: X=-3  Z correction [um]=-0.01800644
17-03-18 06:17:19.934 -07 000000591 INF: Autofocus finished
17-03-18 06:17:20.134 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:20.134 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:20.134 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137784360612442. ----------
17-03-18 06:17:20.144 -07 000000610 INF: Cycle	147	Tile	7	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:20.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28605, sync = True, waitForSettling = True)
17-03-18 06:17:20.144 -07 000000610 INF: Z Motor: Moving to -0.130945 mm, started at -0.137784 mm, distance = 6.84 um
17-03-18 06:17:20.144 -07 000000610 INF: FPGA: Xmit ZDACW 28605\n [Z Motor]
17-03-18 06:17:20.144 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:17:20.154 -07 000000610 INF: FPGA: 'ZDACW 28605' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:20.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:20.154 -07 000000581 INF: FPGA: Recv ZDACR 28605
17-03-18 06:17:20.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:20.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:17:20.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:20.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.324 -07 000000501 INF: FPGA: Recv ZSGSRD 29679
17-03-18 06:17:20.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:17:20.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.344 -07 000000590 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:17:20.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.354 -07 000000590 INF: FPGA: Recv ZSGSRD 29670
17-03-18 06:17:20.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.364 -07 000000590 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:17:20.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.374 -07 000000467 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:17:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.384 -07 000000467 INF: FPGA: Recv ZSGSRD 29679
17-03-18 06:17:20.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:17:20.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:20.404 -07 000000467 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:17:20.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:20.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:20.414 -07 000000606 INF: FPGA: Recv ZPIEZORD 25120
17-03-18 06:17:20.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:20.424 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-18 06:17:20.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29679 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:17:20.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 6, negNoise = 5
17-03-18 06:17:20.424 -07 000000610 INF: Z Motor: After move to -0.130945, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:20.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:17:20.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:20.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:20.424 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:20.424 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:20.424 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:20.424 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:20.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:20.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:20.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:17:20.424 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:20.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:17:20.424 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:20.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:20.434 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:20.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:20.434 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:20.444 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:17:20.444 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:17:20.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:17:20.444 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:17:20.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28781 150\n [Camera]
17-03-18 06:17:20.644 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:21.104 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:21.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:21.104 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:21.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:21.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:21.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:21.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:21.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:17:21.104 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:21.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:17:21.294 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.000345,
17-03-18 06:17:21.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28781 840
17-03-18 06:17:21.444 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:21.494 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:17:21.494 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:17:21.494 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:21.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:17:21.494 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:17:21.494 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:21.494 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:21.494 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:17:21.494 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:21.504 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:21.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:21.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:21.664 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:21.664 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:21.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:17:21.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:21.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:21.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:21.664 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:21.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:17:21.844 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:21.854 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:17:21.854 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:21.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28781 150' command took 2 ms to send, 1397 ms to get response, and 1408 ms overall
17-03-18 06:17:21.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:21.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130948998893608. ------
17-03-18 06:17:21.864 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13761 mm
17-03-18 06:17:21.864 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:21.864 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:21.864 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:17:21.864 -07 000000629 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:17:21.864 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30060, sync = True, waitForSettling = False)
17-03-18 06:17:21.864 -07 000000591 INF: Z Motor: Moving to -0.137606 mm, started at -0.130949 mm, distance = -6.66 um
17-03-18 06:17:21.864 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:21.874 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:21.874 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:21.874 -07 000000606 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:17:21.884 -07 000000591 INF: FPGA: Xmit ZDACW 30060\n [Z Motor]
17-03-18 06:17:21.884 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:17:21.884 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:21.884 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:17:21.884 -07 000000629 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:21.884 -07 000000629 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:17:21.894 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:21.894 -07 000000591 INF: FPGA: 'ZDACW 30060' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:17:21.904 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:21.914 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:21.914 -07 000000590 INF: FPGA: Recv ZDACR 30060
17-03-18 06:17:21.924 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:21.924 -07 000000591 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:17:22.074 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:17:22.074 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:17:22.074 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:22.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:17:22.074 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:17:22.074 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:22.074 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:22.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:17:22.074 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:22.084 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:17:22.094 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:22.094 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:17:22.274 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:17:22.274 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:17:22.334 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:22.334 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:17:22.344 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:22.344 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:22.344 -07 000000629 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:17:22.344 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 06:17:23.294 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:23.294 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:17:23.304 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:23.304 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:23.334 -07 000000629 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:23.334 -07 000000629 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:23.334 -07 000000629 INF: Y Motor: Moved to 65.7134 after 1470 ms (table move)
17-03-18 06:17:23.344 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137606 mm (DAC = 30060)
17-03-18 06:17:23.344 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.344 -07 000000590 INF: FPGA: Recv ZSGSRD 30710
17-03-18 06:17:23.354 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:23.354 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.354 -07 000000590 INF: FPGA: Recv ZSGSRD 30709
17-03-18 06:17:23.364 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.364 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.364 -07 000000479 INF: FPGA: Recv ZSGSRD 30712
17-03-18 06:17:23.374 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.374 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.374 -07 000000590 INF: FPGA: Recv ZSGSRD 30707
17-03-18 06:17:23.384 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.384 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.384 -07 000000629 INF: FPGA: Recv ZSGSRD 30711
17-03-18 06:17:23.394 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.394 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.394 -07 000000629 INF: FPGA: Recv ZSGSRD 30708
17-03-18 06:17:23.404 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.404 -07 000000629 INF: FPGA: Recv ZSGSRD 30713
17-03-18 06:17:23.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.414 -07 000000629 INF: FPGA: Recv ZSGSRD 30716
17-03-18 06:17:23.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.424 -07 000000629 INF: FPGA: Recv ZSGSRD 30706
17-03-18 06:17:23.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:23.434 -07 000000590 INF: FPGA: Recv ZSGSRD 30709
17-03-18 06:17:23.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.444 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:23.444 -07 000000467 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 06:17:23.454 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.2 V.
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30710 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30710 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30706 (-136.8 uncal um), Max = 30716 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30710, posNoise = 6, negNoise = 4
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: After move to -0.137606, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: Settle wait time = 1473 ms, measure time = 109 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:17:23.454 -07 000000581 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:23.504 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:17:23.504 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:23.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:23.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:23.504 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:23.504 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:23.504 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:23.504 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:23.514 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:23.514 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:23.514 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:23.514 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:23.524 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:17:23.524 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:17:23.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:23.574 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:17:23.874 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:17:23.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:17:23.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:23.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:17:23.914 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:23.914 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:23.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:17:23.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:17:23.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:23.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:23.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:17:24.014 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:24.014 -07 000000611 INF: Autofocus start
17-03-18 06:17:24.014 -07 000000611 INF: MeasureProfile start
17-03-18 06:17:24.014 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:24.024 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:24.024 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:24.024 -07 000000611 INF: MeasureProfile done
17-03-18 06:17:24.024 -07 000000611 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:17:24.024 -07 000000611 INF: Autofocus finished
17-03-18 06:17:24.224 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:24.224 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:24.224 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137610906884614. ----------
17-03-18 06:17:24.224 -07 000000610 INF: Cycle	147	Tile	8	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:24.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28601, sync = True, waitForSettling = True)
17-03-18 06:17:24.234 -07 000000610 INF: Z Motor: Moving to -0.130927 mm, started at -0.137611 mm, distance = 6.68 um
17-03-18 06:17:24.234 -07 000000610 INF: FPGA: Xmit ZDACW 28601\n [Z Motor]
17-03-18 06:17:24.234 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:17:24.244 -07 000000610 INF: FPGA: 'ZDACW 28601' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:24.244 -07 000000479 INF: FPGA: Recv ZDACR 28601
17-03-18 06:17:24.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:24.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.404 -07 000000585 INF: FPGA: Recv ZSGSRD 29670
17-03-18 06:17:24.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:24.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.414 -07 000000479 INF: FPGA: Recv ZSGSRD 29673
17-03-18 06:17:24.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.424 -07 000000585 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:17:24.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.434 -07 000000629 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:17:24.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:17:24.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:17:24.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29670
17-03-18 06:17:24.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:17:24.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.484 -07 000000629 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:17:24.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:24.494 -07 000000585 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:17:24.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:24.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:24.504 -07 000000590 INF: FPGA: Recv ZPIEZORD 25149
17-03-18 06:17:24.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:24.514 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.9 V.
17-03-18 06:17:24.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29671 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29670 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29667 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:24.514 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29671, posNoise = 6, negNoise = 4
17-03-18 06:17:24.514 -07 000000610 INF: Z Motor: After move to -0.130927, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:24.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:17:24.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:24.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:24.514 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:24.514 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:24.514 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:24.514 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:24.514 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:24.514 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:24.514 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:17:24.514 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:24.514 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:17:24.514 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:24.514 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:24.514 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:24.524 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:24.524 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:24.524 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:24.524 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:24.524 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:17:24.524 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:24.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28778 150\n [Camera]
17-03-18 06:17:24.734 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:25.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 648
17-03-18 06:17:25.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 648
17-03-18 06:17:25.184 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:25.184 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:25.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:17:25.184 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 648
17-03-18 06:17:25.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 648
17-03-18 06:17:25.194 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:25.194 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:25.194 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:17:25.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28778 840
17-03-18 06:17:25.524 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:25.564 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:17:25.574 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:17:25.574 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:25.574 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:17:25.574 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:17:25.574 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:25.574 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:25.574 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:17:25.574 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:25.584 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:17:25.744 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:25.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:25.744 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:25.744 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:25.744 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:17:25.754 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:25.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:25.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:25.754 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:25.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:17:25.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:17:25.934 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:25.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28778 150' command took 2 ms to send, 1399 ms to get response, and 1408 ms overall
17-03-18 06:17:25.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:25.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130936150469324. ------
17-03-18 06:17:25.944 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:25.944 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13732 mm
17-03-18 06:17:25.944 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:25.954 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:25.954 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:17:25.954 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29997, sync = True, waitForSettling = False)
17-03-18 06:17:25.954 -07 000000382 INF: Z Motor: Moving to -0.137317 mm, started at -0.130936 mm, distance = -6.38 um
17-03-18 06:17:25.954 -07 000000382 INF: FPGA: Xmit ZDACW 29997\n [Z Motor]
17-03-18 06:17:25.954 -07 000000581 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:17:25.954 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:25.954 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:17:25.964 -07 000000382 INF: FPGA: 'ZDACW 29997' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:25.964 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:25.964 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:17:25.974 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:25.974 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:25.974 -07 000000581 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:25.974 -07 000000581 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:25.974 -07 000000581 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:17:25.984 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:25.984 -07 000000474 INF: FPGA: Recv ZDACR 29997
17-03-18 06:17:25.994 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:25.994 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:25.994 -07 000000382 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:17:26.144 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:17:26.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:17:26.144 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:26.144 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:26.144 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:17:26.144 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:26.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:26.154 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:17:26.154 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:17:26.154 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:17:26.174 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:26.174 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 06:17:26.364 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:17:26.364 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:26.414 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:26.424 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:17:26.434 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:26.434 -07 000000581 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:26.434 -07 000000581 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:17:26.434 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 06:17:26.664 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.007176,
17-03-18 06:17:26.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:27.384 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:27.384 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:17:27.394 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.394 -07 000000581 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:27.424 -07 000000581 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:27.424 -07 000000581 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:27.424 -07 000000581 INF: Y Motor: Moved to 66.5386 after 1473 ms (table move)
17-03-18 06:17:27.424 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137317 mm (DAC = 29997)
17-03-18 06:17:27.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.434 -07 000000629 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:17:27.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:17:27.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.434 -07 000000629 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:17:27.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:27.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.444 -07 000000606 INF: FPGA: Recv ZSGSRD 30661
17-03-18 06:17:27.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.454 -07 000000629 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:17:27.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.464 -07 000000606 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:17:27.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.474 -07 000000629 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:17:27.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.484 -07 000000606 INF: FPGA: Recv ZSGSRD 30661
17-03-18 06:17:27.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.494 -07 000000479 INF: FPGA: Recv ZSGSRD 30657
17-03-18 06:17:27.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.504 -07 000000479 INF: FPGA: Recv ZSGSRD 30666
17-03-18 06:17:27.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:27.514 -07 000000479 INF: FPGA: Recv ZSGSRD 30666
17-03-18 06:17:27.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.524 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:27.524 -07 000000479 INF: FPGA: Recv ZPIEZORD 26459
17-03-18 06:17:27.534 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.2 V.
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30665 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30672 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30665, posNoise = 7, negNoise = 8
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: After move to -0.137317, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: Settle wait time = 1478 ms, measure time = 102 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:17:27.534 -07 000000467 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:27.584 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:17:27.584 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:27.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:27.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:27.584 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:27.584 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:27.584 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:27.584 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:27.584 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:17:27.584 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:27.594 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:27.594 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:27.594 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:27.594 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:17:27.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:27.644 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:27.944 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:27.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:27.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:27.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:17:27.984 -07 000000581 INF: FPGA: Recv @CAMSNAP 381
17-03-18 06:17:27.984 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:27.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:17:28.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:17:28.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:28.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:28.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:17:28.084 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:28.084 -07 000000629 INF: Autofocus start
17-03-18 06:17:28.084 -07 000000629 INF: MeasureProfile start
17-03-18 06:17:28.084 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:28.094 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:17:28.094 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:28.094 -07 000000629 INF: MeasureProfile done
17-03-18 06:17:28.094 -07 000000629 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:17:28.094 -07 000000629 INF: Autofocus finished
17-03-18 06:17:28.294 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:28.294 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:28.304 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137321817338235. ----------
17-03-18 06:17:28.304 -07 000000610 INF: Cycle	147	Tile	9	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:28.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28475, sync = True, waitForSettling = True)
17-03-18 06:17:28.304 -07 000000610 INF: Z Motor: Moving to -0.130350 mm, started at -0.137322 mm, distance = 6.97 um
17-03-18 06:17:28.304 -07 000000610 INF: FPGA: Xmit ZDACW 28475\n [Z Motor]
17-03-18 06:17:28.304 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:17:28.314 -07 000000610 INF: FPGA: 'ZDACW 28475' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:28.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:28.314 -07 000000581 INF: FPGA: Recv ZDACR 28475
17-03-18 06:17:28.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:28.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29573
17-03-18 06:17:28.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:28.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29581
17-03-18 06:17:28.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:17:28.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.504 -07 000000467 INF: FPGA: Recv ZSGSRD 29579
17-03-18 06:17:28.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.514 -07 000000629 INF: FPGA: Recv ZSGSRD 29580
17-03-18 06:17:28.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.524 -07 000000629 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:17:28.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.534 -07 000000629 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:17:28.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.544 -07 000000629 INF: FPGA: Recv ZSGSRD 29581
17-03-18 06:17:28.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.554 -07 000000629 INF: FPGA: Recv ZSGSRD 29578
17-03-18 06:17:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:28.564 -07 000000581 INF: FPGA: Recv ZSGSRD 29577
17-03-18 06:17:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:28.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:28.574 -07 000000581 INF: FPGA: Recv ZPIEZORD 24990
17-03-18 06:17:28.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:28.584 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -10.1 V.
17-03-18 06:17:28.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29580 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29573 (-129.5 uncal um), Max = 29584 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:17:28.584 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29580, posNoise = 4, negNoise = 7
17-03-18 06:17:28.584 -07 000000610 INF: Z Motor: After move to -0.130350, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:28.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:17:28.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:28.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:28.584 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:28.584 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:28.584 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:28.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:28.584 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:28.584 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:28.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:28.584 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:28.584 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:28.584 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:28.594 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:28.594 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:28.594 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:28.594 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:28.604 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:17:28.604 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:28.604 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:17:28.604 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:28.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28651 150\n [Camera]
17-03-18 06:17:28.804 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:29.264 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:29.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:29.264 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:29.264 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:29.264 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:17:29.264 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:29.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:29.264 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:29.264 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:29.264 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:17:29.454 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28651 840
17-03-18 06:17:29.604 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:29.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:17:29.654 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:17:29.654 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:29.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:17:29.664 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:17:29.664 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:29.664 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:29.664 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:17:29.664 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:29.674 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:17:29.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:29.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:29.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:29.824 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:29.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:17:29.824 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:29.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:29.824 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:29.824 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:29.824 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:17:30.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:17:30.014 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:30.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28651 150' command took 2 ms to send, 1404 ms to get response, and 1408 ms overall
17-03-18 06:17:30.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:30.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130351547164424. ------
17-03-18 06:17:30.014 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:30.014 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13707 mm
17-03-18 06:17:30.014 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:30.024 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:30.024 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:17:30.024 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:30.024 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:17:30.024 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:17:30.024 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29942, sync = True, waitForSettling = False)
17-03-18 06:17:30.024 -07 000000467 INF: Z Motor: Moving to -0.137066 mm, started at -0.130352 mm, distance = -6.71 um
17-03-18 06:17:30.034 -07 000000467 INF: FPGA: Xmit ZDACW 29942\n [Z Motor]
17-03-18 06:17:30.034 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:17:30.044 -07 000000467 INF: FPGA: 'ZDACW 29942' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:17:30.044 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:30.044 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:17:30.054 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:17:30.054 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:30.054 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:30.054 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:30.054 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:17:30.054 -07 000000462 INF: FPGA: Recv ZDACR 29942
17-03-18 06:17:30.064 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:30.064 -07 000000467 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 06:17:30.064 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:30.214 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:17:30.214 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:17:30.214 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:30.214 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:30.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:17:30.224 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:17:30.224 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:30.224 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:17:30.224 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:30.224 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 06:17:30.224 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:17:30.224 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:17:30.434 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:17:30.434 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:17:30.494 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:30.494 -07 000000618 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:17:30.504 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:30.504 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:30.504 -07 000000501 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:17:30.504 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 06:17:31.454 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:31.454 -07 000000474 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:17:31.464 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:31.464 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:31.494 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:31.494 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:31.494 -07 000000501 INF: Y Motor: Moved to 67.3716 after 1468 ms (table move)
17-03-18 06:17:31.494 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137066 mm (DAC = 29942)
17-03-18 06:17:31.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30629
17-03-18 06:17:31.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:17:31.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.504 -07 000000590 INF: FPGA: Recv ZSGSRD 30628
17-03-18 06:17:31.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.514 -07 000000438 INF: FPGA: Recv ZSGSRD 30619
17-03-18 06:17:31.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30621
17-03-18 06:17:31.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.534 -07 000000479 INF: FPGA: Recv ZSGSRD 30625
17-03-18 06:17:31.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.544 -07 000000581 INF: FPGA: Recv ZSGSRD 30624
17-03-18 06:17:31.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.554 -07 000000585 INF: FPGA: Recv ZSGSRD 30631
17-03-18 06:17:31.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.564 -07 000000561 INF: FPGA: Recv ZSGSRD 30629
17-03-18 06:17:31.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30621
17-03-18 06:17:31.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.584 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:31.584 -07 000000382 INF: FPGA: Recv ZSGSRD 30618
17-03-18 06:17:31.594 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.594 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:31.594 -07 000000581 INF: FPGA: Recv ZPIEZORD 26405
17-03-18 06:17:31.604 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.3 V.
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30624 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30624 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30618 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30624, posNoise = 7, negNoise = 6
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: After move to -0.137066, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:17:31.604 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:31.654 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:17:31.654 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:31.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:31.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:31.654 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:31.654 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:31.654 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:31.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:31.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:31.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:31.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:31.664 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:31.674 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:31.674 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:17:31.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:31.714 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:31.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:32.014 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:32.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:32.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:32.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:17:32.034 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.003063,
17-03-18 06:17:32.054 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:32.054 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:32.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:17:32.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:17:32.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:32.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:32.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:17:32.154 -07 000000501 INF: Autofocus start
17-03-18 06:17:32.154 -07 000000501 INF: MeasureProfile start
17-03-18 06:17:32.154 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:32.154 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:32.164 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:32.164 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:32.164 -07 000000501 INF: MeasureProfile done
17-03-18 06:17:32.164 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:17:32.164 -07 000000501 INF: Autofocus finished
17-03-18 06:17:32.364 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:32.364 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:17:32.364 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137058424640423. ----------
17-03-18 06:17:32.374 -07 000000610 INF: Cycle	147	Tile	10	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:32.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28466, sync = True, waitForSettling = True)
17-03-18 06:17:32.374 -07 000000610 INF: Z Motor: Moving to -0.130309 mm, started at -0.137058 mm, distance = 6.75 um
17-03-18 06:17:32.384 -07 000000610 INF: FPGA: Xmit ZDACW 28466\n [Z Motor]
17-03-18 06:17:32.384 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:17:32.394 -07 000000610 INF: FPGA: 'ZDACW 28466' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:17:32.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:32.394 -07 000000382 INF: FPGA: Recv ZDACR 28466
17-03-18 06:17:32.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.554 -07 000000382 INF: FPGA: Recv ZSGSRD 29570
17-03-18 06:17:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.564 -07 000000382 INF: FPGA: Recv ZSGSRD 29579
17-03-18 06:17:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.574 -07 000000382 INF: FPGA: Recv ZSGSRD 29573
17-03-18 06:17:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.584 -07 000000479 INF: FPGA: Recv ZSGSRD 29572
17-03-18 06:17:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.594 -07 000000479 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:17:32.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29574
17-03-18 06:17:32.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.614 -07 000000479 INF: FPGA: Recv ZSGSRD 29579
17-03-18 06:17:32.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.624 -07 000000474 INF: FPGA: Recv ZSGSRD 29573
17-03-18 06:17:32.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:17:32.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:32.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29572
17-03-18 06:17:32.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:32.654 -07 000000467 INF: FPGA: Recv ZPIEZORD 25018
17-03-18 06:17:32.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:32.664 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -10.0 V.
17-03-18 06:17:32.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29574 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29574 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29570 (-129.5 uncal um), Max = 29579 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:32.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29574, posNoise = 5, negNoise = 4
17-03-18 06:17:32.664 -07 000000610 INF: Z Motor: After move to -0.130309, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:32.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:17:32.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:32.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:32.664 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:32.664 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:32.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:32.664 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:32.664 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:32.664 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:32.664 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:32.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:17:32.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:32.664 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:32.674 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:17:32.674 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:32.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:17:32.674 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:32.684 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:17:32.684 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:17:32.694 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:17:32.694 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:17:32.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28643 150\n [Camera]
17-03-18 06:17:32.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:33.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:33.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:33.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:33.354 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:33.354 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:17:33.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:33.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:33.354 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:33.354 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:33.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:17:33.544 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28643 840
17-03-18 06:17:33.694 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:33.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:17:33.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:17:33.724 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:33.734 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:17:33.734 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:17:33.734 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:33.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:33.734 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:33.734 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:17:33.744 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:17:33.914 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:33.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:33.914 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:33.914 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:33.914 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:17:33.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:33.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:33.914 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:33.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:33.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:17:34.104 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:17:34.104 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:34.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28643 150' command took 2 ms to send, 1403 ms to get response, and 1409 ms overall
17-03-18 06:17:34.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:34.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130313001891574. ------
17-03-18 06:17:34.104 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:34.104 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13670 mm
17-03-18 06:17:34.104 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:34.114 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:17:34.114 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:17:34.114 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:34.114 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:34.114 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:17:34.114 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29863, sync = True, waitForSettling = False)
17-03-18 06:17:34.114 -07 000000591 INF: Z Motor: Moving to -0.136704 mm, started at -0.130313 mm, distance = -6.39 um
17-03-18 06:17:34.114 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:17:34.124 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:34.124 -07 000000591 INF: FPGA: Xmit ZDACW 29863\n [Z Motor]
17-03-18 06:17:34.124 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:34.124 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:34.124 -07 000000467 INF: Y Motor: Moving 1346 steps-23
17-03-18 06:17:34.124 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:17:34.134 -07 000000591 INF: FPGA: 'ZDACW 29863' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:17:34.134 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:34.144 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:34.154 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:34.154 -07 000000585 INF: FPGA: Recv ZDACR 29863
17-03-18 06:17:34.164 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:34.164 -07 000000591 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:17:34.314 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:17:34.314 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:17:34.314 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:34.314 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:17:34.314 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:17:34.314 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:34.314 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:34.324 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:17:34.324 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:17:34.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:17:34.334 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:34.334 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 06:17:34.514 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:17:34.514 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:34.574 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:34.574 -07 000000585 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:17:34.584 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:34.584 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:34.584 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 06:17:34.584 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:17:35.534 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:35.534 -07 000000474 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:17:35.544 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:35.544 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:35.574 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:35.574 -07 000000467 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:35.574 -07 000000467 INF: Y Motor: Moved to 68.2046 after 1461 ms (table move)
17-03-18 06:17:35.574 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136704 mm (DAC = 29863)
17-03-18 06:17:35.574 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30577
17-03-18 06:17:35.584 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:35.584 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.584 -07 000000591 INF: FPGA: Recv ZSGSRD 30556
17-03-18 06:17:35.594 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:35.594 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.594 -07 000000479 INF: FPGA: Recv ZSGSRD 30567
17-03-18 06:17:35.604 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.604 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.604 -07 000000585 INF: FPGA: Recv ZSGSRD 30568
17-03-18 06:17:35.614 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.614 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.614 -07 000000467 INF: FPGA: Recv ZSGSRD 30560
17-03-18 06:17:35.624 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.624 -07 000000467 INF: FPGA: Recv ZSGSRD 30567
17-03-18 06:17:35.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.634 -07 000000590 INF: FPGA: Recv ZSGSRD 30570
17-03-18 06:17:35.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.644 -07 000000467 INF: FPGA: Recv ZSGSRD 30573
17-03-18 06:17:35.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.654 -07 000000382 INF: FPGA: Recv ZSGSRD 30571
17-03-18 06:17:35.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:35.664 -07 000000467 INF: FPGA: Recv ZSGSRD 30565
17-03-18 06:17:35.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.674 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:35.674 -07 000000382 INF: FPGA: Recv ZPIEZORD 26383
17-03-18 06:17:35.684 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.2 V.
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30567 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30568 (-135.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30556 (-135.8 uncal um), Max = 30577 (-136.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30567, posNoise = 10, negNoise = 11
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: After move to -0.136704, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:17:35.684 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:35.734 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:17:35.734 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:35.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:35.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:35.734 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:35.734 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:35.734 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:35.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:35.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:35.734 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:35.744 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:35.744 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:35.744 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:35.744 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:17:35.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:35.794 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:36.094 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:36.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:36.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:36.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 06:17:36.134 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:36.134 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:36.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:17:36.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:17:36.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:36.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:36.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:17:36.234 -07 000000480 INF: Autofocus start
17-03-18 06:17:36.234 -07 000000480 INF: MeasureProfile start
17-03-18 06:17:36.234 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:36.234 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:36.244 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:17:36.244 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:36.244 -07 000000480 INF: MeasureProfile done
17-03-18 06:17:36.244 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:17:36.244 -07 000000480 INF: Autofocus finished
17-03-18 06:17:36.444 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:36.444 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:36.444 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136692244548342. ----------
17-03-18 06:17:36.444 -07 000000610 INF: Cycle	147	Tile	11	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:36.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28387, sync = True, waitForSettling = True)
17-03-18 06:17:36.454 -07 000000610 INF: Z Motor: Moving to -0.129947 mm, started at -0.136692 mm, distance = 6.74 um
17-03-18 06:17:36.454 -07 000000610 INF: FPGA: Xmit ZDACW 28387\n [Z Motor]
17-03-18 06:17:36.454 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:17:36.464 -07 000000610 INF: FPGA: 'ZDACW 28387' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:36.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:36.464 -07 000000480 INF: FPGA: Recv ZDACR 28387
17-03-18 06:17:36.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:36.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.624 -07 000000467 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:17:36.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29515
17-03-18 06:17:36.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.644 -07 000000382 INF: FPGA: Recv ZSGSRD 29518
17-03-18 06:17:36.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.654 -07 000000590 INF: FPGA: Recv ZSGSRD 29520
17-03-18 06:17:36.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.664 -07 000000382 INF: FPGA: Recv ZSGSRD 29523
17-03-18 06:17:36.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29521
17-03-18 06:17:36.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.684 -07 000000590 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:17:36.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.694 -07 000000590 INF: FPGA: Recv ZSGSRD 29515
17-03-18 06:17:36.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.704 -07 000000590 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:17:36.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:36.714 -07 000000590 INF: FPGA: Recv ZSGSRD 29517
17-03-18 06:17:36.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:36.724 -07 000000590 INF: FPGA: Recv ZPIEZORD 24973
17-03-18 06:17:36.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:36.734 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -10.0 V.
17-03-18 06:17:36.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29518 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29519 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29523 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:17:36.734 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29518, posNoise = 5, negNoise = 10
17-03-18 06:17:36.734 -07 000000610 INF: Z Motor: After move to -0.129947, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:36.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:17:36.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:36.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:36.734 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:36.734 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:36.734 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:36.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:36.734 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:36.734 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:36.734 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:17:36.734 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:36.734 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:36.734 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:36.744 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:36.744 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:36.744 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:36.744 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:36.754 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:17:36.754 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:17:36.754 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:17:36.754 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:17:36.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28564 150\n [Camera]
17-03-18 06:17:36.844 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:36.954 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:37.394 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.009895,
17-03-18 06:17:37.414 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:37.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:37.414 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:37.414 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:37.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:17:37.414 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 648
17-03-18 06:17:37.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 648
17-03-18 06:17:37.424 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:37.424 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:37.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:17:37.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28564 840
17-03-18 06:17:37.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:37.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:17:37.804 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:17:37.804 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:37.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:37.804 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:17:37.804 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:17:37.804 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:37.804 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:37.804 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:17:37.814 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:17:37.974 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:37.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:37.984 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:37.984 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:37.984 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 06:17:37.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:37.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:37.984 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:37.984 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:37.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 06:17:38.164 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:38.164 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:38.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28564 150' command took 2 ms to send, 1398 ms to get response, and 1409 ms overall
17-03-18 06:17:38.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:38.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129953246011635. ------
17-03-18 06:17:38.174 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:38.174 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13662 mm
17-03-18 06:17:38.174 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:38.174 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:38.184 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:38.184 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:17:38.184 -07 000000591 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:17:38.184 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:38.184 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29844, sync = True, waitForSettling = False)
17-03-18 06:17:38.184 -07 000000480 INF: Z Motor: Moving to -0.136617 mm, started at -0.129953 mm, distance = -6.66 um
17-03-18 06:17:38.194 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:38.194 -07 000000438 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:17:38.204 -07 000000480 INF: FPGA: Xmit ZDACW 29844\n [Z Motor]
17-03-18 06:17:38.204 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:38.204 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:38.204 -07 000000591 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:38.204 -07 000000591 INF: Y Motor: Moving 1341 steps-16
17-03-18 06:17:38.204 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:17:38.214 -07 000000480 INF: FPGA: 'ZDACW 29844' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:38.214 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:38.214 -07 000000629 INF: FPGA: Recv ZDACR 29844
17-03-18 06:17:38.224 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:38.224 -07 000000480 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:17:38.224 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:38.384 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:38.384 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:38.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:17:38.384 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:17:38.384 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:38.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:17:38.384 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:17:38.384 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:38.394 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:38.394 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:17:38.394 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:17:38.394 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:17:38.594 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 06:17:38.594 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:38.644 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:38.654 -07 000000462 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:17:38.654 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:17:38.654 -07 000000591 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:38.654 -07 000000591 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:17:38.654 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:17:39.604 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:39.604 -07 000000629 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:17:39.614 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:39.614 -07 000000591 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:39.644 -07 000000591 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:39.644 -07 000000591 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:39.644 -07 000000591 INF: Y Motor: Moved to 69.0264 after 1464 ms (table move)
17-03-18 06:17:39.644 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136617 mm (DAC = 29844)
17-03-18 06:17:39.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.654 -07 000000438 INF: FPGA: Recv ZSGSRD 30561
17-03-18 06:17:39.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:17:39.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.654 -07 000000611 INF: FPGA: Recv ZSGSRD 30563
17-03-18 06:17:39.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:39.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.664 -07 000000629 INF: FPGA: Recv ZSGSRD 30549
17-03-18 06:17:39.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.674 -07 000000585 INF: FPGA: Recv ZSGSRD 30552
17-03-18 06:17:39.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30548
17-03-18 06:17:39.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.694 -07 000000629 INF: FPGA: Recv ZSGSRD 30559
17-03-18 06:17:39.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.704 -07 000000629 INF: FPGA: Recv ZSGSRD 30554
17-03-18 06:17:39.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.714 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.714 -07 000000629 INF: FPGA: Recv ZSGSRD 30552
17-03-18 06:17:39.724 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.724 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.724 -07 000000438 INF: FPGA: Recv ZSGSRD 30565
17-03-18 06:17:39.734 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.734 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:39.734 -07 000000438 INF: FPGA: Recv ZSGSRD 30557
17-03-18 06:17:39.744 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.744 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:39.744 -07 000000438 INF: FPGA: Recv ZPIEZORD 26352
17-03-18 06:17:39.754 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.2 V.
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30556 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30556 (-135.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30548 (-135.8 uncal um), Max = 30565 (-135.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30556, posNoise = 9, negNoise = 8
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: After move to -0.136617, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: Settle wait time = 1467 ms, measure time = 102 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:17:39.754 -07 000000606 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:39.804 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 06:17:39.804 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:39.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:39.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:39.804 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:39.804 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:39.804 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:39.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:39.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:39.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:39.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:39.814 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:39.824 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:17:39.824 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:17:39.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:39.874 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:40.174 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:40.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:40.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:40.314 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:40.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 06:17:40.324 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:40.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 490 ms to get response, and 492 ms overall
17-03-18 06:17:40.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:17:40.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:40.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:40.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 264 ms.
17-03-18 06:17:40.524 -07 000000424 INF: Autofocus start
17-03-18 06:17:40.524 -07 000000424 INF: MeasureProfile start
17-03-18 06:17:40.524 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:40.524 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:40.534 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:17:40.534 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:40.534 -07 000000424 INF: MeasureProfile done
17-03-18 06:17:40.534 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:17:40.534 -07 000000424 INF: Autofocus finished
17-03-18 06:17:40.734 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:40.734 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:17:40.734 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136621578214783. ----------
17-03-18 06:17:40.744 -07 000000610 INF: Cycle	147	Tile	12	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:40.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28339, sync = True, waitForSettling = True)
17-03-18 06:17:40.744 -07 000000610 INF: Z Motor: Moving to -0.129728 mm, started at -0.136622 mm, distance = 6.89 um
17-03-18 06:17:40.744 -07 000000610 INF: FPGA: Xmit ZDACW 28339\n [Z Motor]
17-03-18 06:17:40.744 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:17:40.754 -07 000000610 INF: FPGA: 'ZDACW 28339' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:40.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:40.754 -07 000000467 INF: FPGA: Recv ZDACR 28339
17-03-18 06:17:40.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:40.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.914 -07 000000467 INF: FPGA: Recv ZSGSRD 29485
17-03-18 06:17:40.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.924 -07 000000467 INF: FPGA: Recv ZSGSRD 29485
17-03-18 06:17:40.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29482
17-03-18 06:17:40.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.944 -07 000000585 INF: FPGA: Recv ZSGSRD 29482
17-03-18 06:17:40.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.954 -07 000000585 INF: FPGA: Recv ZSGSRD 29486
17-03-18 06:17:40.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.964 -07 000000591 INF: FPGA: Recv ZSGSRD 29479
17-03-18 06:17:40.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.974 -07 000000585 INF: FPGA: Recv ZSGSRD 29483
17-03-18 06:17:40.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.984 -07 000000438 INF: FPGA: Recv ZSGSRD 29483
17-03-18 06:17:40.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:40.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:40.994 -07 000000382 INF: FPGA: Recv ZSGSRD 29479
17-03-18 06:17:41.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:41.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:41.004 -07 000000467 INF: FPGA: Recv ZSGSRD 29482
17-03-18 06:17:41.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:41.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:41.014 -07 000000424 INF: FPGA: Recv ZPIEZORD 24916
17-03-18 06:17:41.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:41.024 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -10.0 V.
17-03-18 06:17:41.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29483 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29482 (-128.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29479 (-128.9 uncal um), Max = 29486 (-129.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:41.024 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29483, posNoise = 3, negNoise = 4
17-03-18 06:17:41.024 -07 000000610 INF: Z Motor: After move to -0.129728, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:41.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:17:41.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:41.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:41.024 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:41.024 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:41.024 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:41.024 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:41.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:41.024 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:41.024 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:41.024 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:41.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:41.024 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:41.034 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:41.034 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:41.034 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:41.034 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:41.044 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:41.044 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:41.044 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:17:41.044 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:17:41.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28515 150\n [Camera]
17-03-18 06:17:41.244 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:41.704 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:41.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:41.704 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:41.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:41.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:41.704 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:41.704 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:41.704 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:17:41.714 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:41.714 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:17:41.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:41.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28515 840
17-03-18 06:17:42.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:42.094 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:17:42.094 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:17:42.094 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:42.104 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:42.104 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:17:42.104 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:17:42.104 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:17:42.104 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:42.104 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:42.114 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:17:42.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:42.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:42.264 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:42.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:42.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:42.264 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:42.384 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:42.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:17:42.384 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:42.384 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:17:42.454 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:42.454 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:42.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28515 150' command took 4 ms to send, 1404 ms to get response, and 1409 ms overall
17-03-18 06:17:42.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:42.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129728398586673. ------
17-03-18 06:17:42.454 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:42.454 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13612 mm
17-03-18 06:17:42.454 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:42.464 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:17:42.464 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:17:42.464 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:42.464 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:42.464 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:17:42.464 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29736, sync = True, waitForSettling = False)
17-03-18 06:17:42.464 -07 000000606 INF: Z Motor: Moving to -0.136123 mm, started at -0.129728 mm, distance = -6.39 um
17-03-18 06:17:42.464 -07 000000611 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:17:42.474 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:42.474 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:42.474 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:42.474 -07 000000382 INF: Y Motor: Moving 1354 steps-33
17-03-18 06:17:42.474 -07 000000606 INF: FPGA: Xmit ZDACW 29736\n [Z Motor]
17-03-18 06:17:42.474 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:17:42.484 -07 000000606 INF: FPGA: 'ZDACW 29736' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:17:42.484 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:42.494 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:42.504 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:42.504 -07 000000467 INF: FPGA: Recv ZDACR 29736
17-03-18 06:17:42.514 -07 000000606 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:17:42.514 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:17:42.684 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:42.684 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 06:17:42.774 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.999021,
17-03-18 06:17:42.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:17:42.774 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:17:42.774 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:42.774 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:42.784 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:17:42.784 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:17:42.784 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:42.784 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 06:17:42.784 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:42.784 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 06:17:42.864 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:17:42.864 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:42.914 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:42.924 -07 000000561 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:17:42.924 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:17:42.924 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:42.924 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:17:42.924 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 06:17:43.874 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:43.874 -07 000000480 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:17:43.884 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.884 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:43.914 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:43.914 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:43.914 -07 000000382 INF: Y Motor: Moved to 69.8628 after 1451 ms (table move)
17-03-18 06:17:43.914 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136123 mm (DAC = 29736)
17-03-18 06:17:43.914 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.914 -07 000000591 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:17:43.924 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:17:43.924 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.924 -07 000000561 INF: FPGA: Recv ZSGSRD 30482
17-03-18 06:17:43.934 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.934 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.934 -07 000000480 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:17:43.944 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.944 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.944 -07 000000382 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:17:43.954 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.954 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.954 -07 000000591 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:17:43.964 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.964 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.964 -07 000000618 INF: FPGA: Recv ZSGSRD 30480
17-03-18 06:17:43.974 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.974 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.974 -07 000000480 INF: FPGA: Recv ZSGSRD 30477
17-03-18 06:17:43.984 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.984 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.984 -07 000000382 INF: FPGA: Recv ZSGSRD 30481
17-03-18 06:17:43.994 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:43.994 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:43.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30483
17-03-18 06:17:44.004 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.004 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:44.004 -07 000000462 INF: FPGA: Recv ZSGSRD 30480
17-03-18 06:17:44.014 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.014 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:44.014 -07 000000467 INF: FPGA: Recv ZPIEZORD 26275
17-03-18 06:17:44.024 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.2 V.
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30480 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30480 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30475 (-135.3 uncal um), Max = 30484 (-135.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30480, posNoise = 4, negNoise = 5
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: After move to -0.136123, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-18 06:17:44.024 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:44.074 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 06:17:44.074 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:44.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:44.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:44.074 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:44.074 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:44.074 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:44.074 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:44.084 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:44.084 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:44.084 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:44.084 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:44.094 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:17:44.094 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:17:44.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:44.144 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:44.444 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:44.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:44.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:44.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596664208, 0x0, 559484976) start.
17-03-18 06:17:44.484 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:44.484 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:44.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 06:17:44.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596664208, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:17:44.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:44.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:44.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:17:44.584 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:44.584 -07 000000629 INF: Autofocus start
17-03-18 06:17:44.584 -07 000000629 INF: MeasureProfile start
17-03-18 06:17:44.584 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:44.594 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:44.594 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:44.604 -07 000000629 INF: MeasureProfile done
17-03-18 06:17:44.604 -07 000000629 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 06:17:44.604 -07 000000629 INF: Autofocus finished
17-03-18 06:17:44.794 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:44.794 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:44.794 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136133338092009. ----------
17-03-18 06:17:44.794 -07 000000610 INF: Cycle	147	Tile	13	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:44.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28146, sync = True, waitForSettling = True)
17-03-18 06:17:44.804 -07 000000610 INF: Z Motor: Moving to -0.128844 mm, started at -0.136133 mm, distance = 7.29 um
17-03-18 06:17:44.804 -07 000000610 INF: FPGA: Xmit ZDACW 28146\n [Z Motor]
17-03-18 06:17:44.804 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:17:44.814 -07 000000610 INF: FPGA: 'ZDACW 28146' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:44.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:44.814 -07 000000502 INF: FPGA: Recv ZDACR 28146
17-03-18 06:17:44.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:44.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:44.974 -07 000000438 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:17:44.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:44.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:17:44.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:44.994 -07 000000629 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:17:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.004 -07 000000480 INF: FPGA: Recv ZSGSRD 29345
17-03-18 06:17:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.014 -07 000000382 INF: FPGA: Recv ZSGSRD 29347
17-03-18 06:17:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.024 -07 000000501 INF: FPGA: Recv ZSGSRD 29349
17-03-18 06:17:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29352
17-03-18 06:17:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.044 -07 000000462 INF: FPGA: Recv ZSGSRD 29339
17-03-18 06:17:45.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29340
17-03-18 06:17:45.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:45.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29354
17-03-18 06:17:45.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:45.074 -07 000000479 INF: FPGA: Recv ZPIEZORD 24772
17-03-18 06:17:45.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:45.084 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.295 V. Piezo Error = -10.0 V.
17-03-18 06:17:45.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29348 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29350 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29339 (-128.0 uncal um), Max = 29354 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:17:45.084 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29348, posNoise = 6, negNoise = 9
17-03-18 06:17:45.084 -07 000000610 INF: Z Motor: After move to -0.128844, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:45.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:17:45.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:45.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:45.084 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:45.084 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:45.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:45.084 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:45.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:45.084 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:45.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:45.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:45.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:45.084 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:45.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:17:45.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:45.094 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:45.094 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:45.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:17:45.104 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:45.104 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:45.104 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:45.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28323 150\n [Camera]
17-03-18 06:17:45.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:45.754 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:45.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:45.754 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:45.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:45.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:45.764 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:45.764 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:45.764 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:17:45.764 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:45.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:17:45.954 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28323 840
17-03-18 06:17:46.104 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:46.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:17:46.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:17:46.154 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:46.164 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:17:46.164 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:46.164 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:46.164 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:46.164 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:17:46.164 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:46.174 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:17:46.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:46.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:46.334 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:46.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:46.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:46.334 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:46.334 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:46.334 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:17:46.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:46.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:17:46.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:46.514 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:46.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28323 150' command took 2 ms to send, 1401 ms to get response, and 1409 ms overall
17-03-18 06:17:46.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:46.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.128861129947536. ------
17-03-18 06:17:46.514 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:46.514 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13525 mm
17-03-18 06:17:46.514 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:46.524 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:17:46.524 -07 000000611 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:17:46.524 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29546, sync = True, waitForSettling = False)
17-03-18 06:17:46.524 -07 000000581 INF: Z Motor: Moving to -0.135253 mm, started at -0.128861 mm, distance = -6.39 um
17-03-18 06:17:46.524 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:46.524 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:17:46.524 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:46.524 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:17:46.534 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:46.534 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:46.534 -07 000000611 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:46.534 -07 000000611 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:46.534 -07 000000611 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:17:46.544 -07 000000581 INF: FPGA: Xmit ZDACW 29546\n [Z Motor]
17-03-18 06:17:46.544 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:17:46.554 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:46.554 -07 000000581 INF: FPGA: 'ZDACW 29546' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:17:46.564 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:46.564 -07 000000618 INF: FPGA: Recv ZDACR 29546
17-03-18 06:17:46.574 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:46.574 -07 000000581 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:17:46.734 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:46.734 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 06:17:46.734 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:17:46.734 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:17:46.734 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:46.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:17:46.744 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:17:46.744 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:46.744 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:46.744 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:46.744 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:17:46.754 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:17:46.844 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:46.924 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:17:46.924 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:46.974 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:46.984 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:17:46.984 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:17:46.984 -07 000000611 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:46.984 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:17:46.984 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:17:47.934 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:47.934 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:17:47.944 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:47.944 -07 000000611 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:47.984 -07 000000611 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:47.984 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:47.984 -07 000000611 INF: Y Motor: Moved to 70.6880 after 1462 ms (table move)
17-03-18 06:17:47.984 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135253 mm (DAC = 29546)
17-03-18 06:17:47.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:47.994 -07 000000606 INF: FPGA: Recv ZSGSRD 30341
17-03-18 06:17:48.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:48.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.004 -07 000000585 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:17:48.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.014 -07 000000502 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:17:48.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.024 -07 000000501 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:17:48.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.034 -07 000000479 INF: FPGA: Recv ZSGSRD 30341
17-03-18 06:17:48.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.044 -07 000000479 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:17:48.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.054 -07 000000479 INF: FPGA: Recv ZSGSRD 30351
17-03-18 06:17:48.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.064 -07 000000479 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:17:48.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.074 -07 000000591 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:17:48.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:48.084 -07 000000424 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:17:48.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.094 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:48.094 -07 000000502 INF: FPGA: Recv ZPIEZORD 26135
17-03-18 06:17:48.104 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.3 V.
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30344 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30343 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30341 (-134.4 uncal um), Max = 30351 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30344, posNoise = 7, negNoise = 3
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: After move to -0.135253, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: Settle wait time = 1466 ms, measure time = 111 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:17:48.104 -07 000000474 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:48.144 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:17:48.144 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:48.144 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.001704,
17-03-18 06:17:48.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:48.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:48.144 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:48.144 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:48.144 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:48.144 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:48.144 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:48.144 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:48.154 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:48.154 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:48.154 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:48.154 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:17:48.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:48.224 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:48.524 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:48.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:48.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:48.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) start.
17-03-18 06:17:48.564 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:48.564 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:48.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 06:17:48.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:17:48.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:48.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:48.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:17:48.664 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:48.664 -07 000000479 INF: Autofocus start
17-03-18 06:17:48.664 -07 000000479 INF: MeasureProfile start
17-03-18 06:17:48.664 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:48.674 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:48.674 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:48.694 -07 000000479 INF: MeasureProfile done
17-03-18 06:17:48.694 -07 000000479 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:17:48.694 -07 000000479 INF: Autofocus finished
17-03-18 06:17:48.874 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:48.874 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:48.874 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.13525964524073. ----------
17-03-18 06:17:48.874 -07 000000610 INF: Cycle	147	Tile	14	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:48.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28024, sync = True, waitForSettling = True)
17-03-18 06:17:48.884 -07 000000610 INF: Z Motor: Moving to -0.128286 mm, started at -0.135260 mm, distance = 6.97 um
17-03-18 06:17:48.884 -07 000000610 INF: FPGA: Xmit ZDACW 28024\n [Z Motor]
17-03-18 06:17:48.884 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:17:48.894 -07 000000610 INF: FPGA: 'ZDACW 28024' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:48.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:48.894 -07 000000501 INF: FPGA: Recv ZDACR 28024
17-03-18 06:17:48.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:48.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:49.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29262
17-03-18 06:17:49.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.064 -07 000000581 INF: FPGA: Recv ZSGSRD 29261
17-03-18 06:17:49.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29258
17-03-18 06:17:49.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29258
17-03-18 06:17:49.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.094 -07 000000424 INF: FPGA: Recv ZSGSRD 29259
17-03-18 06:17:49.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29260
17-03-18 06:17:49.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.114 -07 000000585 INF: FPGA: Recv ZSGSRD 29262
17-03-18 06:17:49.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.124 -07 000000474 INF: FPGA: Recv ZSGSRD 29260
17-03-18 06:17:49.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.134 -07 000000424 INF: FPGA: Recv ZSGSRD 29256
17-03-18 06:17:49.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:49.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29259
17-03-18 06:17:49.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:49.154 -07 000000502 INF: FPGA: Recv ZPIEZORD 24671
17-03-18 06:17:49.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:49.164 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.1 V.
17-03-18 06:17:49.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29256 (-127.5 uncal um), Max = 29262 (-127.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:17:49.164 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 2, negNoise = 4
17-03-18 06:17:49.164 -07 000000610 INF: Z Motor: After move to -0.128286, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:49.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:17:49.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:49.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:49.164 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:49.164 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:49.164 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:49.164 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:49.164 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:49.164 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:49.164 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:49.164 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:49.164 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:49.164 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:49.174 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:49.174 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:49.174 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:49.174 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:49.184 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:17:49.184 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:17:49.184 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:17:49.184 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:17:49.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28201 150\n [Camera]
17-03-18 06:17:49.384 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:49.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:49.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:49.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:49.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:49.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:17:49.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:49.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:49.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:49.844 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:49.844 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:17:50.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28201 840
17-03-18 06:17:50.184 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:50.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:17:50.244 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:17:50.244 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:50.244 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:17:50.244 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:17:50.244 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:50.244 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:50.244 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:17:50.254 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:17:50.254 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:17:50.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:50.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:50.404 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:50.404 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:50.404 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:17:50.404 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:50.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:50.404 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:50.404 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:50.404 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:17:50.594 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:17:50.594 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:50.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28201 150' command took 2 ms to send, 1396 ms to get response, and 1409 ms overall
17-03-18 06:17:50.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:50.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128295799279061. ------
17-03-18 06:17:50.604 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:50.604 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13503 mm
17-03-18 06:17:50.604 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:50.604 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:17:50.604 -07 000000591 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:17:50.604 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:50.604 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29498, sync = True, waitForSettling = False)
17-03-18 06:17:50.604 -07 000000501 INF: Z Motor: Moving to -0.135033 mm, started at -0.128296 mm, distance = -6.74 um
17-03-18 06:17:50.614 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:50.614 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:50.614 -07 000000461 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:17:50.624 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:17:50.624 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:50.624 -07 000000591 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:50.624 -07 000000591 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:50.624 -07 000000591 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:17:50.634 -07 000000501 INF: FPGA: Xmit ZDACW 29498\n [Z Motor]
17-03-18 06:17:50.634 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:17:50.644 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:50.644 -07 000000501 INF: FPGA: 'ZDACW 29498' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:17:50.654 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:50.654 -07 000000461 INF: FPGA: Recv ZDACR 29498
17-03-18 06:17:50.664 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:50.664 -07 000000501 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:17:50.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:17:50.794 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:17:50.794 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:50.794 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:17:50.794 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:17:50.794 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:50.794 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:50.804 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:17:50.804 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:17:50.804 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:17:50.824 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:50.824 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:17:51.014 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:17:51.014 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:51.064 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:51.074 -07 000000611 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:17:51.084 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:51.084 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:51.084 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:17:51.084 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 06:17:51.844 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:52.034 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:52.034 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:17:52.044 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.044 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:52.074 -07 000000591 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:52.074 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:17:52.074 -07 000000591 INF: Y Motor: Moved to 71.5186 after 1465 ms (table move)
17-03-18 06:17:52.074 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135033 mm (DAC = 29498)
17-03-18 06:17:52.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.074 -07 000000581 INF: FPGA: Recv ZSGSRD 30317
17-03-18 06:17:52.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:52.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.084 -07 000000424 INF: FPGA: Recv ZSGSRD 30313
17-03-18 06:17:52.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.094 -07 000000629 INF: FPGA: Recv ZSGSRD 30317
17-03-18 06:17:52.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.104 -07 000000590 INF: FPGA: Recv ZSGSRD 30306
17-03-18 06:17:52.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.114 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.114 -07 000000581 INF: FPGA: Recv ZSGSRD 30308
17-03-18 06:17:52.124 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.124 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.124 -07 000000618 INF: FPGA: Recv ZSGSRD 30312
17-03-18 06:17:52.134 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.134 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.134 -07 000000502 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:17:52.144 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.144 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.144 -07 000000606 INF: FPGA: Recv ZSGSRD 30305
17-03-18 06:17:52.154 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.154 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.154 -07 000000590 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:17:52.164 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.164 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:52.164 -07 000000462 INF: FPGA: Recv ZSGSRD 30314
17-03-18 06:17:52.174 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.174 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:52.174 -07 000000502 INF: FPGA: Recv ZPIEZORD 26124
17-03-18 06:17:52.184 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.2 V.
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30304 (-134.2 uncal um), Max = 30317 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 7, negNoise = 6
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: After move to -0.135033, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:17:52.184 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:52.234 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:17:52.234 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:52.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:52.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:52.234 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:52.234 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:52.234 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:52.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:52.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:52.234 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:52.244 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:52.244 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:52.244 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:17:52.244 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:17:52.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:52.294 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:52.594 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:52.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:52.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:52.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 06:17:52.634 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:52.634 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:52.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 06:17:52.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:17:52.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:52.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:17:52.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:17:52.734 -07 000000581 INF: Autofocus start
17-03-18 06:17:52.734 -07 000000581 INF: MeasureProfile start
17-03-18 06:17:52.734 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:52.734 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:52.744 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:52.744 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:52.744 -07 000000581 INF: MeasureProfile done
17-03-18 06:17:52.744 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:17:52.744 -07 000000581 INF: Autofocus finished
17-03-18 06:17:52.944 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:52.944 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:52.944 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.13504122202791. ----------
17-03-18 06:17:52.944 -07 000000610 INF: Cycle	147	Tile	15	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:52.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-18 06:17:52.954 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.135041 mm, distance = 6.84 um
17-03-18 06:17:52.954 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-18 06:17:52.954 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:17:52.964 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:52.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:52.964 -07 000000501 INF: FPGA: Recv ZDACR 28005
17-03-18 06:17:52.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:52.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:53.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.124 -07 000000618 INF: FPGA: Recv ZSGSRD 29239
17-03-18 06:17:53.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:53.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.134 -07 000000629 INF: FPGA: Recv ZSGSRD 29251
17-03-18 06:17:53.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29241
17-03-18 06:17:53.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29245
17-03-18 06:17:53.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.164 -07 000000618 INF: FPGA: Recv ZSGSRD 29246
17-03-18 06:17:53.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.174 -07 000000581 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:17:53.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.194 -07 000000461 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:17:53.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:17:53.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29250
17-03-18 06:17:53.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.214 -07 000000590 INF: FPGA: Recv ZSGSRD 29246
17-03-18 06:17:53.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:53.224 -07 000000502 INF: FPGA: Recv ZSGSRD 29247
17-03-18 06:17:53.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:53.234 -07 000000479 INF: FPGA: Recv ZPIEZORD 24717
17-03-18 06:17:53.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:53.244 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.9 V.
17-03-18 06:17:53.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29245 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29246 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29239 (-127.4 uncal um), Max = 29251 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:17:53.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29245, posNoise = 6, negNoise = 6
17-03-18 06:17:53.244 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:53.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:17:53.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:53.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:53.244 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:53.244 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:53.244 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:53.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:53.244 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:53.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:53.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:53.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:53.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:17:53.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:53.254 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:17:53.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:53.254 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:53.254 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:53.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:17:53.254 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:17:53.264 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:17:53.264 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:17:53.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28182 150\n [Camera]
17-03-18 06:17:53.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:53.504 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.996267,
17-03-18 06:17:53.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:53.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:53.914 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:53.914 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:53.914 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:17:53.914 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:53.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:53.924 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:53.924 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:53.924 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:17:54.104 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28182 840
17-03-18 06:17:54.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:54.304 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:17:54.304 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:17:54.304 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:54.304 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:54.304 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:17:54.304 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:17:54.304 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:54.314 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:17:54.314 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:54.314 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:17:54.474 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:54.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:54.474 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:54.474 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:54.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:17:54.484 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:54.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:54.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:54.484 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:54.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:17:54.674 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:54.674 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:54.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28182 150' command took 2 ms to send, 1400 ms to get response, and 1409 ms overall
17-03-18 06:17:54.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:54.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128199436096934. ------
17-03-18 06:17:54.674 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:54.674 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13460 mm
17-03-18 06:17:54.674 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:54.684 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29403, sync = True, waitForSettling = False)
17-03-18 06:17:54.684 -07 000000501 INF: Z Motor: Moving to -0.134598 mm, started at -0.128199 mm, distance = -6.40 um
17-03-18 06:17:54.684 -07 000000501 INF: FPGA: Xmit ZDACW 29403\n [Z Motor]
17-03-18 06:17:54.684 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:17:54.684 -07 000000629 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 06:17:54.684 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:54.684 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 06:17:54.684 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:17:54.694 -07 000000501 INF: FPGA: 'ZDACW 29403' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:17:54.694 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:54.704 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:54.704 -07 000000479 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:17:54.714 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:17:54.714 -07 000000629 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:54.714 -07 000000629 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:54.714 -07 000000629 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:17:54.714 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:54.714 -07 000000424 INF: FPGA: Recv ZDACR 29403
17-03-18 06:17:54.724 -07 000000501 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:54.724 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:17:54.724 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:54.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:17:54.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:17:54.884 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:54.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:17:54.884 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:17:54.884 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:54.894 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:54.894 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:17:54.894 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:17:54.894 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:54.894 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-18 06:17:54.904 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:17:55.094 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:17:55.094 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:17:55.154 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:55.154 -07 000000581 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:17:55.164 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:55.164 -07 000000629 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:55.164 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:17:55.164 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 06:17:56.114 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:56.114 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:17:56.124 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:17:56.124 -07 000000629 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:56.154 -07 000000629 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:17:56.154 -07 000000629 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:17:56.154 -07 000000629 INF: Y Motor: Moved to 72.3491 after 1470 ms (table move)
17-03-18 06:17:56.154 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134598 mm (DAC = 29403)
17-03-18 06:17:56.154 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.154 -07 000000462 INF: FPGA: Recv ZSGSRD 30247
17-03-18 06:17:56.164 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:17:56.164 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30233
17-03-18 06:17:56.174 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.174 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.174 -07 000000501 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:17:56.184 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.184 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.184 -07 000000501 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:17:56.194 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.194 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30243
17-03-18 06:17:56.204 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.204 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30245
17-03-18 06:17:56.214 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.214 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.214 -07 000000501 INF: FPGA: Recv ZSGSRD 30240
17-03-18 06:17:56.224 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.224 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.224 -07 000000618 INF: FPGA: Recv ZSGSRD 30244
17-03-18 06:17:56.234 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.234 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.234 -07 000000618 INF: FPGA: Recv ZSGSRD 30241
17-03-18 06:17:56.244 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:56.244 -07 000000618 INF: FPGA: Recv ZSGSRD 30242
17-03-18 06:17:56.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.254 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:56.254 -07 000000618 INF: FPGA: Recv ZPIEZORD 26001
17-03-18 06:17:56.264 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -9.3 V.
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30241 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30242 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30233 (-133.8 uncal um), Max = 30247 (-133.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30241, posNoise = 6, negNoise = 8
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: After move to -0.134598, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: Settle wait time = 1474 ms, measure time = 105 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:17:56.264 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:17:56.314 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:17:56.314 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:17:56.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:56.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:56.334 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:56.334 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:56.334 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:17:56.334 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:56.334 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:17:56.334 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:17:56.344 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:56.344 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:17:56.354 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:17:56.354 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:17:56.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:17:56.404 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:17:56.704 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:17:56.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:17:56.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:17:56.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 06:17:56.744 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:17:56.744 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:17:56.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:17:56.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:17:56.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:56.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:17:56.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:17:56.844 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:56.844 -07 000000462 INF: Autofocus start
17-03-18 06:17:56.844 -07 000000462 INF: MeasureProfile start
17-03-18 06:17:56.844 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:17:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:17:56.844 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:56.854 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:17:56.854 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:17:56.854 -07 000000462 INF: MeasureProfile done
17-03-18 06:17:56.854 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:17:56.854 -07 000000462 INF: Autofocus finished
17-03-18 06:17:57.054 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:17:57.054 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:17:57.054 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134597951390128. ----------
17-03-18 06:17:57.054 -07 000000610 INF: Cycle	147	Tile	16	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:17:57.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27928, sync = True, waitForSettling = True)
17-03-18 06:17:57.064 -07 000000610 INF: Z Motor: Moving to -0.127846 mm, started at -0.134598 mm, distance = 6.75 um
17-03-18 06:17:57.064 -07 000000610 INF: FPGA: Xmit ZDACW 27928\n [Z Motor]
17-03-18 06:17:57.064 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:17:57.074 -07 000000610 INF: FPGA: 'ZDACW 27928' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:57.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:57.074 -07 000000590 INF: FPGA: Recv ZDACR 27928
17-03-18 06:17:57.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:17:57.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29191
17-03-18 06:17:57.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.244 -07 000000581 INF: FPGA: Recv ZSGSRD 29193
17-03-18 06:17:57.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.254 -07 000000479 INF: FPGA: Recv ZSGSRD 29198
17-03-18 06:17:57.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29188
17-03-18 06:17:57.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29193
17-03-18 06:17:57.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.284 -07 000000629 INF: FPGA: Recv ZSGSRD 29185
17-03-18 06:17:57.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.294 -07 000000382 INF: FPGA: Recv ZSGSRD 29194
17-03-18 06:17:57.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.304 -07 000000480 INF: FPGA: Recv ZSGSRD 29190
17-03-18 06:17:57.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29180
17-03-18 06:17:57.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:17:57.324 -07 000000467 INF: FPGA: Recv ZSGSRD 29195
17-03-18 06:17:57.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:17:57.334 -07 000000461 INF: FPGA: Recv ZPIEZORD 24614
17-03-18 06:17:57.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:57.344 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -10.0 V.
17-03-18 06:17:57.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29191 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29192 (-127.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29180 (-127.0 uncal um), Max = 29198 (-127.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:17:57.344 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29191, posNoise = 7, negNoise = 11
17-03-18 06:17:57.344 -07 000000610 INF: Z Motor: After move to -0.127846, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:17:57.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:17:57.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:17:57.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:17:57.344 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:17:57.344 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:17:57.344 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:17:57.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:17:57.344 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:17:57.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:17:57.344 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:17:57.344 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:17:57.344 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:17:57.344 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:17:57.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:17:57.354 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:17:57.354 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:17:57.354 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:17:57.364 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:17:57.364 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:17:57.364 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:17:57.364 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:17:57.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28104 150\n [Camera]
17-03-18 06:17:57.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:17:58.014 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:17:58.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:17:58.024 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:58.024 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:58.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:17:58.024 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:17:58.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:17:58.024 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:58.024 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:58.024 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:17:58.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28104 840
17-03-18 06:17:58.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:17:58.414 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:17:58.414 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:17:58.414 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:58.414 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:58.414 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:17:58.424 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:17:58.424 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:58.424 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:58.424 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:58.434 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:17:58.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:17:58.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:17:58.584 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:17:58.584 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:17:58.584 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:17:58.584 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:17:58.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:17:58.584 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:17:58.584 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:17:58.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:17:58.774 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:17:58.774 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:17:58.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28104 150' command took 2 ms to send, 1403 ms to get response, and 1409 ms overall
17-03-18 06:17:58.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:17:58.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.127852528641279. ------
17-03-18 06:17:58.774 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:17:58.774 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13440 mm
17-03-18 06:17:58.774 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:17:58.784 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:17:58.784 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29360, sync = True, waitForSettling = False)
17-03-18 06:17:58.784 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:17:58.784 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:58.784 -07 000000424 INF: Z Motor: Moving to -0.134401 mm, started at -0.127853 mm, distance = -6.55 um
17-03-18 06:17:58.784 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:17:58.784 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 9 ms overall
17-03-18 06:17:58.784 -07 000000629 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:17:58.794 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:17:58.794 -07 000000382 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:58.794 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:17:58.794 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:17:58.794 -07 000000424 INF: FPGA: Xmit ZDACW 29360\n [Z Motor]
17-03-18 06:17:58.794 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:17:58.804 -07 000000424 INF: FPGA: 'ZDACW 29360' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:17:58.804 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:17:58.814 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:17:58.824 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:17:58.824 -07 000000629 INF: FPGA: Recv ZDACR 29360
17-03-18 06:17:58.834 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:17:58.834 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:17:58.874 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 3.997626,
17-03-18 06:17:58.984 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:17:58.984 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:17:58.984 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:58.984 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:17:58.984 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:17:58.984 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:17:58.984 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:17:58.994 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:17:58.994 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:17:58.994 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:17:59.004 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:17:59.004 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-18 06:17:59.184 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:17:59.184 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:17:59.244 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:17:59.244 -07 000000461 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:17:59.254 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:17:59.254 -07 000000382 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:17:59.254 -07 000000382 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:17:59.254 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 06:18:00.204 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:00.204 -07 000000480 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:18:00.214 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:00.214 -07 000000382 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:00.244 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:18:00.244 -07 000000382 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:18:00.244 -07 000000382 INF: Y Motor: Moved to 73.1753 after 1462 ms (table move)
17-03-18 06:18:00.244 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134401 mm (DAC = 29360)
17-03-18 06:18:00.244 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.244 -07 000000467 INF: FPGA: Recv ZSGSRD 30214
17-03-18 06:18:00.254 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:18:00.254 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30214
17-03-18 06:18:00.264 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.264 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30211
17-03-18 06:18:00.274 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.274 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.274 -07 000000467 INF: FPGA: Recv ZSGSRD 30211
17-03-18 06:18:00.284 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.284 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.284 -07 000000461 INF: FPGA: Recv ZSGSRD 30214
17-03-18 06:18:00.294 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.294 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.294 -07 000000461 INF: FPGA: Recv ZSGSRD 30213
17-03-18 06:18:00.304 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.304 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.304 -07 000000461 INF: FPGA: Recv ZSGSRD 30206
17-03-18 06:18:00.314 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.314 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.314 -07 000000467 INF: FPGA: Recv ZSGSRD 30208
17-03-18 06:18:00.324 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.324 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.324 -07 000000467 INF: FPGA: Recv ZSGSRD 30211
17-03-18 06:18:00.334 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.334 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:00.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30207
17-03-18 06:18:00.344 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.344 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:00.344 -07 000000461 INF: FPGA: Recv ZPIEZORD 25992
17-03-18 06:18:00.354 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -9.3 V.
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30211 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30211 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30206 (-133.6 uncal um), Max = 30214 (-133.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30211, posNoise = 3, negNoise = 5
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: After move to -0.134401, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:18:00.354 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:18:00.404 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:18:00.404 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:18:00.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:00.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:00.404 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:00.404 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:18:00.404 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:00.404 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:00.404 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:18:00.404 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:18:00.414 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:18:00.414 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:18:00.424 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:18:00.424 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:18:00.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:18:00.474 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:18:00.774 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:18:00.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:18:00.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:18:00.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) start.
17-03-18 06:18:00.814 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:18:00.814 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:18:00.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:18:00.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:18:00.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:00.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:18:00.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 06:18:00.914 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:18:00.914 -07 000000479 INF: Autofocus start
17-03-18 06:18:00.914 -07 000000479 INF: MeasureProfile start
17-03-18 06:18:00.914 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:18:00.924 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:18:00.924 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:18:00.924 -07 000000479 INF: MeasureProfile done
17-03-18 06:18:00.924 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:18:00.924 -07 000000479 INF: Autofocus finished
17-03-18 06:18:01.124 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:18:01.124 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:18:01.124 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134405225025875. ----------
17-03-18 06:18:01.124 -07 000000610 INF: Cycle	147	Tile	17	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:18:01.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27855, sync = True, waitForSettling = True)
17-03-18 06:18:01.134 -07 000000610 INF: Z Motor: Moving to -0.127512 mm, started at -0.134405 mm, distance = 6.89 um
17-03-18 06:18:01.134 -07 000000610 INF: FPGA: Xmit ZDACW 27855\n [Z Motor]
17-03-18 06:18:01.134 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:18:01.144 -07 000000610 INF: FPGA: 'ZDACW 27855' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:18:01.144 -07 000000382 INF: FPGA: Recv ZDACR 27855
17-03-18 06:18:01.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:18:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.304 -07 000000461 INF: FPGA: Recv ZSGSRD 29142
17-03-18 06:18:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29140
17-03-18 06:18:01.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.324 -07 000000461 INF: FPGA: Recv ZSGSRD 29140
17-03-18 06:18:01.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29139
17-03-18 06:18:01.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.344 -07 000000461 INF: FPGA: Recv ZSGSRD 29142
17-03-18 06:18:01.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.354 -07 000000461 INF: FPGA: Recv ZSGSRD 29139
17-03-18 06:18:01.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.364 -07 000000585 INF: FPGA: Recv ZSGSRD 29139
17-03-18 06:18:01.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.374 -07 000000480 INF: FPGA: Recv ZSGSRD 29148
17-03-18 06:18:01.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.384 -07 000000480 INF: FPGA: Recv ZSGSRD 29137
17-03-18 06:18:01.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:01.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29141
17-03-18 06:18:01.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:18:01.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:01.404 -07 000000479 INF: FPGA: Recv ZPIEZORD 24581
17-03-18 06:18:01.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:01.414 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.250 V. Piezo Error = -10.0 V.
17-03-18 06:18:01.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29141 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29140 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29137 (-126.7 uncal um), Max = 29148 (-126.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:18:01.414 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29141, posNoise = 7, negNoise = 4
17-03-18 06:18:01.414 -07 000000610 INF: Z Motor: After move to -0.127512, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:01.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:18:01.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:01.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:01.414 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:01.414 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:18:01.414 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:01.414 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:18:01.414 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:01.414 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:18:01.414 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:18:01.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:18:01.414 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:18:01.414 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:18:01.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:18:01.414 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:18:01.414 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:18:01.414 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:18:01.424 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:18:01.424 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:18:01.424 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:18:01.424 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:18:01.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28032 150\n [Camera]
17-03-18 06:18:01.634 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:18:01.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:18:02.084 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:18:02.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:18:02.084 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:02.094 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:02.094 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:18:02.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:18:02.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:18:02.094 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:02.094 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:02.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:18:02.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28032 840
17-03-18 06:18:02.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:18:02.474 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:18:02.474 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:18:02.474 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:02.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:18:02.474 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:18:02.474 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:02.474 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:18:02.474 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:18:02.474 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:18:02.484 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:18:02.654 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:18:02.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:18:02.654 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:02.804 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:18:02.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:18:02.804 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:02.804 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:02.804 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:18:02.814 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:02.814 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:18:02.844 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1402
17-03-18 06:18:02.844 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:18:02.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28032 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall
17-03-18 06:18:02.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:18:02.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127531318034191. ------
17-03-18 06:18:02.844 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:18:02.844 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13336 mm
17-03-18 06:18:02.844 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:18:02.854 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:18:02.854 -07 000000590 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:18:02.854 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:02.854 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:18:02.854 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:18:02.854 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29133, sync = True, waitForSettling = False)
17-03-18 06:18:02.854 -07 000000629 INF: Z Motor: Moving to -0.133362 mm, started at -0.127531 mm, distance = -5.83 um
17-03-18 06:18:02.854 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:18:02.864 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:02.864 -07 000000590 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:02.864 -07 000000590 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:18:02.864 -07 000000590 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:18:02.864 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:18:02.874 -07 000000629 INF: FPGA: Xmit ZDACW 29133\n [Z Motor]
17-03-18 06:18:02.874 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:18:02.884 -07 000000629 INF: FPGA: 'ZDACW 29133' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:18:02.884 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:18:02.894 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:18:02.894 -07 000000438 INF: FPGA: Recv ZDACR 29133
17-03-18 06:18:02.904 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:18:02.904 -07 000000629 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:18:03.064 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:18:03.064 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 212 ms overall
17-03-18 06:18:03.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:18:03.204 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:18:03.204 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:03.204 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:18:03.204 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:18:03.204 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:03.204 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:03.214 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:03.214 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 559 ms.
17-03-18 06:18:03.214 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:18:03.264 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:18:03.264 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:18:03.304 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:03.304 -07 000000479 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:18:03.314 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:18:03.314 -07 000000590 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:03.314 -07 000000590 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:18:03.314 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.118 mm/sec
17-03-18 06:18:04.244 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.014009,
17-03-18 06:18:04.264 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:04.264 -07 000000629 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:18:04.274 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.274 -07 000000590 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:04.294 -07 000000590 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:18:04.294 -07 000000590 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:18:04.294 -07 000000590 INF: Y Motor: Moved to 74.0073 after 1446 ms (table move)
17-03-18 06:18:04.304 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133362 mm (DAC = 29133)
17-03-18 06:18:04.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.304 -07 000000590 INF: FPGA: Recv ZSGSRD 30042
17-03-18 06:18:04.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.314 -07 000000480 INF: FPGA: Recv ZSGSRD 30051
17-03-18 06:18:04.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.324 -07 000000474 INF: FPGA: Recv ZSGSRD 30049
17-03-18 06:18:04.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.334 -07 000000629 INF: FPGA: Recv ZSGSRD 30049
17-03-18 06:18:04.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.344 -07 000000629 INF: FPGA: Recv ZSGSRD 30053
17-03-18 06:18:04.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.354 -07 000000629 INF: FPGA: Recv ZSGSRD 30046
17-03-18 06:18:04.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.364 -07 000000629 INF: FPGA: Recv ZSGSRD 30047
17-03-18 06:18:04.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.374 -07 000000629 INF: FPGA: Recv ZSGSRD 30047
17-03-18 06:18:04.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.384 -07 000000629 INF: FPGA: Recv ZSGSRD 30048
17-03-18 06:18:04.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:04.394 -07 000000629 INF: FPGA: Recv ZSGSRD 30048
17-03-18 06:18:04.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.404 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:04.404 -07 000000629 INF: FPGA: Recv ZPIEZORD 25763
17-03-18 06:18:04.414 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.4 V.
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30048 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30048 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30053 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30048, posNoise = 5, negNoise = 6
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: After move to -0.133362, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:18:04.414 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:18:04.454 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 06:18:04.454 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:18:04.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:04.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:04.454 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:04.454 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:04.454 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:18:04.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:04.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:18:04.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:18:04.464 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:18:04.464 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:18:04.474 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:18:04.474 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:18:04.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:18:04.514 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:18:04.814 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:18:04.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:18:04.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:18:04.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592258904, 0x0, 559484976) start.
17-03-18 06:18:04.854 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:18:04.854 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:18:04.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:18:04.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592258904, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:18:04.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:04.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:18:04.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:18:05.054 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:18:05.054 -07 000000474 INF: Autofocus start
17-03-18 06:18:05.054 -07 000000474 INF: MeasureProfile start
17-03-18 06:18:05.064 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:18:05.064 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:18:05.064 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:18:05.074 -07 000000474 INF: MeasureProfile done
17-03-18 06:18:05.074 -07 000000474 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:18:05.074 -07 000000474 INF: Autofocus finished
17-03-18 06:18:05.264 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:18:05.264 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:18:05.264 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133358078446768. ----------
17-03-18 06:18:05.264 -07 000000610 INF: Cycle	147	Tile	18	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:18:05.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27674, sync = True, waitForSettling = True)
17-03-18 06:18:05.274 -07 000000610 INF: Z Motor: Moving to -0.126683 mm, started at -0.133358 mm, distance = 6.67 um
17-03-18 06:18:05.274 -07 000000610 INF: FPGA: Xmit ZDACW 27674\n [Z Motor]
17-03-18 06:18:05.274 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:18:05.284 -07 000000610 INF: FPGA: 'ZDACW 27674' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:18:05.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:18:05.284 -07 000000585 INF: FPGA: Recv ZDACR 27674
17-03-18 06:18:05.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:18:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.444 -07 000000629 INF: FPGA: Recv ZSGSRD 29013
17-03-18 06:18:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:05.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29014
17-03-18 06:18:05.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.464 -07 000000479 INF: FPGA: Recv ZSGSRD 29008
17-03-18 06:18:05.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.474 -07 000000438 INF: FPGA: Recv ZSGSRD 29006
17-03-18 06:18:05.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.484 -07 000000629 INF: FPGA: Recv ZSGSRD 29004
17-03-18 06:18:05.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.494 -07 000000590 INF: FPGA: Recv ZSGSRD 29012
17-03-18 06:18:05.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.504 -07 000000479 INF: FPGA: Recv ZSGSRD 29010
17-03-18 06:18:05.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.514 -07 000000590 INF: FPGA: Recv ZSGSRD 29011
17-03-18 06:18:05.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.524 -07 000000438 INF: FPGA: Recv ZSGSRD 29007
17-03-18 06:18:05.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:05.534 -07 000000590 INF: FPGA: Recv ZSGSRD 29009
17-03-18 06:18:05.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:05.544 -07 000000629 INF: FPGA: Recv ZPIEZORD 24423
17-03-18 06:18:05.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:05.554 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.223 V. Piezo Error = -10.1 V.
17-03-18 06:18:05.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29009 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29010 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29004 (-125.9 uncal um), Max = 29014 (-125.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:18:05.554 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29009, posNoise = 5, negNoise = 5
17-03-18 06:18:05.554 -07 000000610 INF: Z Motor: After move to -0.126683, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:05.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:18:05.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:05.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:05.554 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:05.554 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:05.554 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:18:05.554 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:05.554 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:18:05.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:18:05.554 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:18:05.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:18:05.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:18:05.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:18:05.564 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:18:05.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:18:05.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:18:05.564 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:18:05.574 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:18:05.574 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:18:05.574 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:18:05.574 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:18:05.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 27850 150\n [Camera]
17-03-18 06:18:05.774 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:18:06.234 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:18:06.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:18:06.234 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:06.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:18:06.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:18:06.234 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:06.244 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:06.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:18:06.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:06.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:18:06.424 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27850 840
17-03-18 06:18:06.574 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:18:06.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:18:06.614 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:18:06.614 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:06.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:18:06.614 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:18:06.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:06.624 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:18:06.624 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:18:06.624 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:18:06.634 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:18:06.794 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:18:06.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:18:06.794 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:06.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:18:06.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:18:06.794 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:06.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 146. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:18:06.924 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:06.924 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:18:06.924 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:06.924 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:18:06.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:18:06.984 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:18:06.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 27850 150' command took 2 ms to send, 1406 ms to get response, and 1411 ms overall
17-03-18 06:18:06.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:18:06.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126683322031479. ------
17-03-18 06:18:06.994 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13318 mm
17-03-18 06:18:06.994 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:18:06.994 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:18:06.994 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:18:06.994 -07 000000467 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 06:18:06.994 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29092, sync = True, waitForSettling = False)
17-03-18 06:18:06.994 -07 000000461 INF: Z Motor: Moving to -0.133175 mm, started at -0.126683 mm, distance = -6.49 um
17-03-18 06:18:06.994 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:18:07.004 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:18:07.004 -07 000000461 INF: FPGA: Xmit ZDACW 29092\n [Z Motor]
17-03-18 06:18:07.004 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:18:07.014 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:07.014 -07 000000461 INF: FPGA: 'ZDACW 29092' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:18:07.014 -07 000000382 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:18:07.024 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:18:07.024 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:18:07.024 -07 000000467 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:07.024 -07 000000467 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:18:07.024 -07 000000467 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:18:07.034 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:18:07.034 -07 000000561 INF: FPGA: Recv ZDACR 29092
17-03-18 06:18:07.044 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:18:07.044 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:18:07.044 -07 000000461 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:18:07.224 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:18:07.224 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:18:07.314 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:18:07.314 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:18:07.314 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:07.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:18:07.324 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:18:07.324 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:07.324 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:07.324 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 06:18:07.324 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:07.334 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 06:18:07.414 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:18:07.414 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:18:07.454 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:07.454 -07 000000438 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:18:07.464 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:07.464 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:07.464 -07 000000467 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:18:07.464 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-18 06:18:08.414 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:08.414 -07 000000561 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:18:08.424 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:08.424 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:08.444 -07 000000467 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:18:08.444 -07 000000467 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:18:08.444 -07 000000467 INF: Y Motor: Moved to 74.8311 after 1446 ms (table move)
17-03-18 06:18:08.444 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133175 mm (DAC = 29092)
17-03-18 06:18:08.444 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.444 -07 000000480 INF: FPGA: Recv ZSGSRD 30021
17-03-18 06:18:08.454 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:18:08.454 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30015
17-03-18 06:18:08.464 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.464 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.464 -07 000000467 INF: FPGA: Recv ZSGSRD 30018
17-03-18 06:18:08.474 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.474 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30018
17-03-18 06:18:08.484 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.484 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30030
17-03-18 06:18:08.494 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.494 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.494 -07 000000629 INF: FPGA: Recv ZSGSRD 30012
17-03-18 06:18:08.504 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.504 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.504 -07 000000474 INF: FPGA: Recv ZSGSRD 30023
17-03-18 06:18:08.514 -07 000000585 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.514 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30023
17-03-18 06:18:08.524 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:08.524 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30012
17-03-18 06:18:08.534 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.534 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:08.534 -07 000000474 INF: FPGA: Recv ZSGSRD 30024
17-03-18 06:18:08.544 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.544 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:08.544 -07 000000467 INF: FPGA: Recv ZPIEZORD 25802
17-03-18 06:18:08.554 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.3 V.
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30020 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30020 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30012 (-132.3 uncal um), Max = 30030 (-132.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30020, posNoise = 10, negNoise = 8
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: After move to -0.133175, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-18 06:18:08.554 -07 000000585 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:18:08.604 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:18:08.604 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:18:08.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:08.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:08.604 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:08.604 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:08.604 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:18:08.604 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:08.604 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:18:08.604 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:18:08.614 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:18:08.614 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:18:08.624 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:18:08.624 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:18:08.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:18:08.674 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:18:08.974 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:18:08.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:18:08.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:18:08.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592258904, 0x0, 559484976) start.
17-03-18 06:18:09.004 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:18:09.014 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:18:09.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:18:09.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592258904, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:18:09.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:09.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:18:09.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:18:09.114 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:18:09.114 -07 000000479 INF: Autofocus start
17-03-18 06:18:09.114 -07 000000479 INF: MeasureProfile start
17-03-18 06:18:09.114 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:18:09.124 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:18:09.124 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:18:09.134 -07 000000479 INF: MeasureProfile done
17-03-18 06:18:09.134 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:18:09.134 -07 000000479 INF: Autofocus finished
17-03-18 06:18:09.324 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:18:09.324 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:18:09.324 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133178200506799. ----------
17-03-18 06:18:09.324 -07 000000610 INF: Cycle	147	Tile	19	Exposure Settings		A	455	G	219	T	219	C	455
17-03-18 06:18:09.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27587, sync = True, waitForSettling = True)
17-03-18 06:18:09.334 -07 000000610 INF: Z Motor: Moving to -0.126285 mm, started at -0.133178 mm, distance = 6.89 um
17-03-18 06:18:09.334 -07 000000610 INF: FPGA: Xmit ZDACW 27587\n [Z Motor]
17-03-18 06:18:09.334 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:18:09.344 -07 000000610 INF: FPGA: 'ZDACW 27587' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:18:09.344 -07 000000479 INF: FPGA: Recv ZDACR 27587
17-03-18 06:18:09.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:18:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.504 -07 000000479 INF: FPGA: Recv ZSGSRD 28945
17-03-18 06:18:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.514 -07 000000479 INF: FPGA: Recv ZSGSRD 28951
17-03-18 06:18:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.524 -07 000000618 INF: FPGA: Recv ZSGSRD 28951
17-03-18 06:18:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.534 -07 000000479 INF: FPGA: Recv ZSGSRD 28948
17-03-18 06:18:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.544 -07 000000479 INF: FPGA: Recv ZSGSRD 28954
17-03-18 06:18:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.554 -07 000000479 INF: FPGA: Recv ZSGSRD 28947
17-03-18 06:18:09.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.564 -07 000000479 INF: FPGA: Recv ZSGSRD 28948
17-03-18 06:18:09.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.574 -07 000000479 INF: FPGA: Recv ZSGSRD 28948
17-03-18 06:18:09.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.584 -07 000000479 INF: FPGA: Recv ZSGSRD 28947
17-03-18 06:18:09.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:18:09.594 -07 000000438 INF: FPGA: Recv ZSGSRD 28943
17-03-18 06:18:09.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:09.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:18:09.614 -07 000000438 INF: FPGA: Recv ZPIEZORD 24402
17-03-18 06:18:09.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:18:09.624 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.210 V. Piezo Error = -10.0 V.
17-03-18 06:18:09.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28948 (-125.5 uncal um), Error = 0.8 uncal um, Median = 28948 (-125.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28943 (-125.5 uncal um), Max = 28954 (-125.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:18:09.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28948, posNoise = 6, negNoise = 5
17-03-18 06:18:09.624 -07 000000610 INF: Z Motor: After move to -0.126285, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:18:09.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:18:09.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:18:09.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:18:09.624 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:18:09.624 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:18:09.624 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:18:09.624 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:18:09.624 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:18:09.624 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:18:09.624 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:18:09.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:18:09.624 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:18:09.624 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:18:09.634 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:18:09.634 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:18:09.634 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.009895,
17-03-18 06:18:09.634 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:18:09.634 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:18:09.644 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:18:09.644 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:18:09.644 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:18:09.644 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:18:09.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 27764 150\n [Camera]
17-03-18 06:18:09.854 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:18:10.314 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-18 06:18:10.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-18 06:18:10.314 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:10.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-18 06:18:10.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-18 06:18:10.314 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:10.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:10.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:18:10.324 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:10.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:18:10.504 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27764 840
17-03-18 06:18:10.654 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-18 06:18:10.694 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:18:10.694 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:18:10.694 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:10.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:18:10.694 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:18:10.694 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:10.694 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:10.694 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:18:10.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:18:10.704 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:18:10.874 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209
17-03-18 06:18:10.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209
17-03-18 06:18:10.874 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:18:10.874 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:18:10.874 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:18:10.874 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209
17-03-18 06:18:10.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209
17-03-18 06:18:10.884 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:18:10.884 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:18:10.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 06:18:11.064 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1401
17-03-18 06:18:11.064 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:18:11.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 27764 150' command took 2 ms to send, 1398 ms to get response, and 1425 ms overall
17-03-18 06:18:11.274 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:18:11.274 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:18:11.274 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:11.274 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:18:11.274 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:18:11.274 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:18:11.274 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:18:11.284 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:18:11.284 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:18:11.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:18:11.284 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:18:11.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:18:11.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:18:11.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:18:11.494 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 06:18:11.494 -07 000000610 INF: Imaging Cycle 147: ScanTilesCommand Cycle 147 time end. Duration was 156391 ms.
17-03-18 06:18:11.494 -07 000000610 INF: =================== Cycle #147 ===================
17-03-18 06:18:11.494 -07 000000610 INF: ===================  ===================
17-03-18 06:18:11.494 -07 000000479 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:18:11.494 -07 000000618 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 06:18:11.504 -07 000000479 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:18:11.504 -07 000000479 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 06:18:11.504 -07 000000479 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 147, FrontChillerTemperature: 4.009895, FrontChillerHeatSinkTemperature: 0.328955, AmbientTemperature: 18.69714, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.57824, GreenLEDSensorTemperature: 27.15216, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 06:18:11.624 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.