17-03-18 06:18:11.674 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:11.684 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:18:11.684 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 06:18:11.684 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:11.684 -07 000000382 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:18:11.694 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:18:11.694 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:11.694 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:18:11.694 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:18:11.694 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:18:11.814 -07 000000461 INF: FPGA: Recv YMVTO 154378 872
17-03-18 06:18:11.814 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 113 ms to get response, and 115 ms overall
17-03-18 06:18:11.814 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:18:11.814 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:18:11.814 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.778 mm/sec
17-03-18 06:18:11.844 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:18:14.814 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:18:14.814 -07 000000590 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:18:14.824 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:18:14.824 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:18:14.844 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:18:14.844 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:18:14.844 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3168 ms
17-03-18 06:18:14.854 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 60° ===================
17-03-18 06:18:14.854 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:18:14.854 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:18:14.864 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:18:14.864 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:18:14.864 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:18:14.864 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 06:18:14.874 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:14.874 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 60° ===================
17-03-18 06:18:14.874 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:14.874 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:18:14.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:14.894 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:18:14.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:18:14.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:18:15.004 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.981281,
17-03-18 06:18:15.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:18:15.214 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:18:15.214 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:18:15.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:15.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:18:15.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:18:15.384 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:15.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:15.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:15.414 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:18:15.414 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:18:15.414 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:18:15.544 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:18:15.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:16.844 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1944, R2=2024, Total=3968. Warn if over 250 bubbles per interval.
17-03-18 06:18:18.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:18.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:19.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:19.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:19.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:19.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:19.644 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:18:19.644 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:19.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:19.804 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:18:19.804 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:18:19.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:19.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:18:19.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:18:19.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:20.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:20.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:20.364 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.99219,
17-03-18 06:18:20.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:20.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:20.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:18:20.584 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:21.804 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:18:21.804 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:18:21.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:21.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:18:21.824 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:18:21.824 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:18:21.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-18 06:18:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:21.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:18:21.974 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:18:21.974 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:18:22.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:22.044 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:18:22.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:18:22.144 -07 000000610 INF: =================== Cycle #148, Pumping Reagent CMS (4) ===================
17-03-18 06:18:22.144 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:22.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:22.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:18:22.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:18:22.174 -07 000000610 INF: =================== Cycle #148, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:18:22.304 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:18:22.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:23.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:23.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:24.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:24.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:24.264 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:18:24.264 -07 000000610 INF: =================== Cycle #148, Pumping Reagent CMS (4) ===================
17-03-18 06:18:24.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:24.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:18:24.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:18:24.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:24.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:18:24.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:18:24.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:24.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:24.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:25.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:25.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:25.204 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:18:25.204 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:25.734 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.020806,
17-03-18 06:18:26.424 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:18:26.424 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:18:26.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:26.444 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:18:26.444 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:18:26.444 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:18:26.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:18:26.614 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:18:26.614 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:18:26.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:26.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:18:26.684 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:18:26.784 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:26.784 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:26.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:26.814 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:18:26.814 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:18:26.814 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:18:26.844 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:26.944 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:18:26.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:27.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:27.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:27.884 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:18:27.884 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:28.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:28.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:18:28.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:18:28.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:28.204 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:18:28.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:18:28.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:28.334 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:28.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:28.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:28.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:28.824 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:18:28.824 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:28.824 -07 000000502 INF: WaitCommand(10000) start
17-03-18 06:18:28.824 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:18:28.824 -07 000000467 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:18:30.044 -07 000000467 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:18:30.044 -07 000000467 INF: LanePump: Xmit /1?\r
17-03-18 06:18:30.074 -07 000000467 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:18:30.074 -07 000000467 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:18:30.204 -07 000000467 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:18:30.244 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:31.104 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.970374,
17-03-18 06:18:31.774 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:31.804 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:31.844 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:32.224 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:32.254 -07 000000467 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:32.254 -07 000000467 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:18:32.254 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:18:32.254 -07 000000467 INF: ===================  ===================
17-03-18 06:18:36.474 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.940374,
17-03-18 06:18:36.844 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:38.834 -07 000000502 INF: WaitCommand(10000) end
17-03-18 06:18:38.834 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:38.834 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:38.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:38.864 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:18:38.864 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:18:38.864 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:18:38.994 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:18:39.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:41.844 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.960826,
17-03-18 06:18:41.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:45.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:45.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:45.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:45.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:46.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:46.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:46.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:46.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:46.844 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:46.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2028, Total=3978. Warn if over 250 bubbles per interval.
17-03-18 06:18:46.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:46.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:46.994 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:18:46.994 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:47.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:47.154 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:18:47.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:18:47.224 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.020806,
17-03-18 06:18:47.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:47.314 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:18:47.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:18:47.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:47.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:47.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:47.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:47.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:47.934 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:18:47.934 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:49.154 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:18:49.154 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:18:49.154 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:49.174 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:18:49.174 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:18:49.174 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:18:49.384 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:18:49.404 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:18:49.404 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:18:49.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:49.474 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:18:49.474 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:18:49.574 -07 000000610 INF: =================== Cycle #148, Pumping Reagent IMT (1) ===================
17-03-18 06:18:49.574 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:49.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:49.604 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:18:49.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:18:49.604 -07 000000610 INF: =================== Cycle #148, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:18:49.734 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:18:49.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:51.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:51.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:51.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:51.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:51.694 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 06:18:51.694 -07 000000610 INF: =================== Cycle #148, Pumping Reagent IMT (1) ===================
17-03-18 06:18:51.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:51.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:18:51.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:18:51.854 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:18:51.854 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:18:51.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:52.014 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:18:52.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:18:52.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:52.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:52.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:52.584 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.026244,
17-03-18 06:18:52.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:52.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:52.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:18:52.634 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:53.854 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:18:53.854 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:18:53.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:53.874 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:18:53.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:18:53.874 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:18:54.104 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:18:54.124 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:18:54.124 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:18:54.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:18:54.194 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:18:54.194 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:18:54.294 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:54.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:18:54.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:54.324 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:18:54.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:18:54.324 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:18:54.454 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:18:54.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:18:55.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:55.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:55.394 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 06:18:55.394 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:18:55.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:55.554 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:18:55.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:18:55.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:18:55.714 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:18:55.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:18:55.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:18:55.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:18:55.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:56.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:18:56.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:18:56.334 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:18:56.334 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:56.334 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 65° ===================
17-03-18 06:18:56.334 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:18:56.334 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:18:56.334 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:18:56.344 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:18:56.344 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:18:56.344 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 06:18:56.354 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:18:56.354 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 65° ===================
17-03-18 06:18:56.354 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:18:56.354 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:18:56.844 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:18:56.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:18:57.964 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.02213,
17-03-18 06:19:01.844 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:01.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:03.324 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.004458,
17-03-18 06:19:06.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:06.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:08.694 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.003063,
17-03-18 06:19:11.844 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:11.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:14.064 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.973092,
17-03-18 06:19:16.844 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:16.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:19.434 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.994908,
17-03-18 06:19:21.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:21.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:24.804 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.970374,
17-03-18 06:19:26.364 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:19:26.364 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:19:26.364 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:19:26.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:19:26.494 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:19:26.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:19:26.494 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:19:26.624 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:19:26.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:19:26.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:26.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:27.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:19:27.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:19:27.234 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:19:27.234 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:19:27.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:19:27.394 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:19:27.394 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:19:27.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:19:27.554 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:19:27.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:19:27.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:19:27.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:19:27.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:19:28.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:19:28.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:19:28.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:19:28.174 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:19:28.174 -07 000000585 INF: WaitCommand(30000) start
17-03-18 06:19:28.174 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:19:28.174 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:19:29.394 -07 000000479 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:19:29.394 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 06:19:29.424 -07 000000479 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:19:29.424 -07 000000479 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:19:29.554 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:19:29.594 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:19:30.174 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.997626,
17-03-18 06:19:31.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:31.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:31.934 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 06:19:31.964 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:19:32.384 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 06:19:32.414 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:19:32.414 -07 000000479 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:19:32.414 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:19:32.414 -07 000000479 INF: ===================  ===================
17-03-18 06:19:35.544 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.003063,
17-03-18 06:19:36.844 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:36.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:40.914 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.999021,
17-03-18 06:19:41.844 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:41.844 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:46.284 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.981281,
17-03-18 06:19:46.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:51.654 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.985358,
17-03-18 06:19:51.844 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:56.844 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:19:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1950, R2=2029, Total=3979. Warn if over 250 bubbles per interval.
17-03-18 06:19:57.034 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.007176,
17-03-18 06:19:58.184 -07 000000585 INF: WaitCommand(30000) end
17-03-18 06:19:58.184 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 22° ===================
17-03-18 06:19:58.184 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:19:58.184 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:19:58.184 -07 000000579 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:19:58.194 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:19:58.194 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:19:58.194 -07 000000611 INF: FPGA: Recv TEC2EN 
17-03-18 06:19:58.204 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:19:58.204 -07 000000610 INF: =================== Cycle #148, Flow Cell Temp 22° ===================
17-03-18 06:19:58.204 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:19:58.204 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:19:58.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:19:58.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:19:58.244 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:19:58.244 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:19:58.244 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:19:58.374 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:19:58.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:01.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:01.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:01.854 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 06:20:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1952, R2=2030, Total=3982. Warn if over 250 bubbles per interval.
17-03-18 06:20:01.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:02.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:02.404 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.003063,
17-03-18 06:20:02.444 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:02.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:02.474 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:20:02.474 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:20:02.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:02.634 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:20:02.634 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:20:02.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:02.794 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:20:02.794 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:20:02.794 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:20:02.924 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:20:02.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:03.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:03.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:03.414 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:20:03.414 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:20:04.634 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:20:04.634 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:20:04.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:04.654 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:20:04.654 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:20:04.654 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:20:04.804 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:20:04.824 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:20:04.824 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:20:04.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:04.894 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:20:04.894 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:20:04.994 -07 000000610 INF: =================== Cycle #148, Pumping Reagent USM (2) ===================
17-03-18 06:20:04.994 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:20:04.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:05.024 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:20:05.024 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:20:05.024 -07 000000610 INF: =================== Cycle #148, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:20:05.154 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:20:05.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:06.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:06.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:06.854 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:20:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1952, R2=2031, Total=3983. Warn if over 250 bubbles per interval.
17-03-18 06:20:07.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:07.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:07.114 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:20:07.114 -07 000000610 INF: =================== Cycle #148, Pumping Reagent USM (2) ===================
17-03-18 06:20:07.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:07.274 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:20:07.274 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:20:07.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:07.434 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:20:07.434 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:20:07.434 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:20:07.564 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:20:07.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:07.764 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.986717,
17-03-18 06:20:08.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:08.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:08.054 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:20:08.054 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:20:09.274 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:20:09.274 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:20:09.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:09.294 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:20:09.294 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:20:09.294 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:20:09.444 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:20:09.464 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:20:09.464 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:20:09.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:09.534 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:20:09.534 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:20:09.634 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:20:09.634 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:20:09.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:09.664 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:20:09.664 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:20:09.664 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:20:09.794 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:20:09.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:10.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:10.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:10.734 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:20:10.734 -07 000000610 INF: =================== Cycle #148, Pumping Reagent PR2 (3) ===================
17-03-18 06:20:10.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:10.894 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:20:10.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:20:11.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:20:11.054 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:20:11.054 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:20:11.054 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:20:11.184 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:20:11.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:11.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:11.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:11.674 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:20:11.674 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:20:11.674 -07 000000474 INF: WaitCommand(10000) start
17-03-18 06:20:11.674 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:20:11.674 -07 000000467 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:20:11.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:20:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1953, R2=2031, Total=3984. Warn if over 250 bubbles per interval.
17-03-18 06:20:12.894 -07 000000467 INF: AsyncDelayTimer waited 1214ms
17-03-18 06:20:12.894 -07 000000467 INF: LanePump: Xmit /1?\r
17-03-18 06:20:12.924 -07 000000467 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:20:12.924 -07 000000467 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:20:13.054 -07 000000467 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:20:13.094 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:13.134 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.974486,
17-03-18 06:20:14.624 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:14.654 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:20:15.074 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 06:20:15.104 -07 000000467 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:20:15.104 -07 000000467 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:20:15.104 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:20:15.104 -07 000000467 INF: ===================  ===================
17-03-18 06:20:16.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:20:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2031, Total=3985. Warn if over 250 bubbles per interval.
17-03-18 06:20:18.504 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.011254,
17-03-18 06:20:21.684 -07 000000474 INF: WaitCommand(10000) end
17-03-18 06:20:21.684 -07 000000610 INF: =================== Cycle #148, Imaging ===================
17-03-18 06:20:21.684 -07 000000610 INF: Imaging Cycle 148: ScanTilesCommand Cycle 148 time start.
17-03-18 06:20:21.694 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:20:21.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:21.714 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:20:21.714 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:20:21.714 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:20:21.854 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:20:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2032, Total=3986. Warn if over 250 bubbles per interval.
17-03-18 06:20:22.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:20:22.034 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:20:22.034 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:20:22.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:20:22.104 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:20:22.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:22.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:22.104 -07 000000474 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:20:22.104 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:22.104 -07 000000474 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:20:22.104 -07 000000467 INF: FPGA: Recv EXLED1ON 
17-03-18 06:20:22.114 -07 000000474 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:22.114 -07 000000474 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:20:22.114 -07 000000467 INF: FPGA: Recv EXLED1ADCR 23162
17-03-18 06:20:22.124 -07 000000474 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:22.124 -07 000000474 INF: RedLED: Using Red data: Photodiode ADC 23162 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-18 06:20:22.124 -07 000000474 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:20:22.124 -07 000000611 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:20:22.134 -07 000000474 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:22.134 -07 000000474 INF: RedLED: LED was on for 19 ms
17-03-18 06:20:22.134 -07 000000474 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:20:22.134 -07 000000474 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:20:22.134 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:22.134 -07 000000474 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:20:22.134 -07 000000467 INF: FPGA: Recv EXLED2ON 
17-03-18 06:20:22.144 -07 000000474 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:20:22.144 -07 000000474 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:20:22.144 -07 000000579 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 06:20:22.154 -07 000000474 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:22.154 -07 000000474 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 06:20:22.154 -07 000000474 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:20:22.154 -07 000000611 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:20:22.164 -07 000000474 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:22.164 -07 000000474 INF: GreenLED: LED was on for 19 ms
17-03-18 06:20:22.164 -07 000000474 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:20:22.164 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:20:22.164 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 06:20:22.174 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:22.174 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:20:22.674 -07 000000579 INF: FPGA: Recv EMOUT
17-03-18 06:20:22.674 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:20:22.674 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:20:22.674 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 06:20:22.684 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:22.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:22.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126291445090831. ------
17-03-18 06:20:22.684 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:22.684 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17847 mm
17-03-18 06:20:22.684 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:22.684 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:22.694 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:20:22.694 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:20:22.694 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38987, sync = True, waitForSettling = False)
17-03-18 06:20:22.694 -07 000000467 INF: Z Motor: Moving to -0.178471 mm, started at -0.126291 mm, distance = -52.18 um
17-03-18 06:20:22.694 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:22.694 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:22.694 -07 000000579 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:20:22.704 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:22.704 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:22.704 -07 000000502 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:22.704 -07 000000502 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:20:22.704 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:20:22.714 -07 000000467 INF: FPGA: Xmit ZDACW 38987\n [Z Motor]
17-03-18 06:20:22.714 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:20:22.724 -07 000000467 INF: FPGA: 'ZDACW 38987' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:22.724 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:20:22.734 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:22.734 -07 000000611 INF: FPGA: Recv ZDACR 38987
17-03-18 06:20:22.744 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:20:22.744 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:20:22.904 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:22.904 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 06:20:23.874 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.011254,
17-03-18 06:20:24.404 -07 000000611 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 06:20:24.404 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 06:20:24.404 -07 000000502 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:20:24.404 -07 000000502 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:20:24.404 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 06:20:26.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:20:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:27.254 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:27.254 -07 000000569 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:20:27.264 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:27.264 -07 000000502 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:27.294 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:27.294 -07 000000502 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:20:27.294 -07 000000502 INF: Y Motor: Moved to 59.9092 after 4602 ms
17-03-18 06:20:27.294 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178471 mm (DAC = 38987)
17-03-18 06:20:27.294 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.294 -07 000000467 INF: FPGA: Recv ZSGSRD 37079
17-03-18 06:20:27.304 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:20:27.304 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.304 -07 000000502 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:20:27.314 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.314 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.314 -07 000000447 INF: FPGA: Recv ZSGSRD 37073
17-03-18 06:20:27.324 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.324 -07 000000611 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:20:27.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.334 -07 000000447 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:20:27.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.344 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.344 -07 000000611 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:20:27.354 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.354 -07 000000585 INF: FPGA: Recv ZSGSRD 37070
17-03-18 06:20:27.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.364 -07 000000569 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:20:27.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.374 -07 000000502 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:20:27.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:27.384 -07 000000447 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:20:27.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.394 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:27.394 -07 000000569 INF: FPGA: Recv ZPIEZORD 33259
17-03-18 06:20:27.404 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.4 V.
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37071 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37072 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37065 (-177.5 uncal um), Max = 37079 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37071, posNoise = 8, negNoise = 6
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: After move to -0.178471, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: Settle wait time = 4605 ms, measure time = 105 ms (allowed 150 ms), total time = 4710 ms
17-03-18 06:20:27.404 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:27.454 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 06:20:27.454 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:27.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:27.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:27.454 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:27.454 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:27.454 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:27.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:27.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:27.454 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:20:27.484 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:20:27.484 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:27.484 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:20:27.484 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:27.504 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 06:20:27.504 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:20:27.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:27.544 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:27.844 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:27.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:27.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:27.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) start.
17-03-18 06:20:27.884 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:27.884 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:27.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:20:27.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:20:27.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:27.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:20:27.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:20:28.084 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:28.084 -07 000000447 INF: Image SNR check: start
17-03-18 06:20:28.084 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:28.094 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:28.094 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:28.094 -07 000000447 INF: Image SNR check: pass  [peak (Max-Min)=130.02]
17-03-18 06:20:28.094 -07 000000447 INF: Autofocus start
17-03-18 06:20:28.094 -07 000000447 INF: MeasureProfile start
17-03-18 06:20:28.104 -07 000000447 INF: MeasureProfile done
17-03-18 06:20:28.104 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:20:28.104 -07 000000447 INF: Autofocus finished
17-03-18 06:20:28.294 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:28.294 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:20:28.294 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178475320318355. ----------
17-03-18 06:20:28.294 -07 000000610 INF: Cycle	148	Tile	1	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:28.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37484, sync = True, waitForSettling = True)
17-03-18 06:20:28.304 -07 000000610 INF: Z Motor: Moving to -0.171591 mm, started at -0.178475 mm, distance = 6.88 um
17-03-18 06:20:28.304 -07 000000610 INF: FPGA: Xmit ZDACW 37484\n [Z Motor]
17-03-18 06:20:28.304 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:20:28.314 -07 000000610 INF: FPGA: 'ZDACW 37484' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:28.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:28.314 -07 000000447 INF: FPGA: Recv ZDACR 37484
17-03-18 06:20:28.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:20:28.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:28.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.474 -07 000000467 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:20:28.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:28.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.484 -07 000000579 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:20:28.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:20:28.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.504 -07 000000502 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:20:28.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:28.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.514 -07 000000569 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:20:28.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.524 -07 000000569 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:20:28.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.534 -07 000000467 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:20:28.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.544 -07 000000579 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:20:28.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.554 -07 000000447 INF: FPGA: Recv ZSGSRD 35997
17-03-18 06:20:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:28.564 -07 000000611 INF: FPGA: Recv ZSGSRD 35998
17-03-18 06:20:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:28.574 -07 000000467 INF: FPGA: Recv ZPIEZORD 31830
17-03-18 06:20:28.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:28.584 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 06:20:28.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36001 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36006 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:20:28.584 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 5, negNoise = 4
17-03-18 06:20:28.584 -07 000000610 INF: Z Motor: After move to -0.171591, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:28.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:20:28.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:28.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:28.584 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:28.584 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:28.584 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:28.584 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:28.584 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:28.584 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:28.584 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:20:28.584 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:20:28.584 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:20:28.584 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:28.594 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:28.594 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:28.604 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:20:28.604 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:20:28.604 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:20:28.614 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:28.614 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:20:28.614 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:28.624 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:20:28.624 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 06:20:28.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37661 150\n [Camera]
17-03-18 06:20:28.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:29.244 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.023489,
17-03-18 06:20:29.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:29.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:29.284 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:29.284 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:29.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:29.284 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:29.294 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:29.294 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:20:29.294 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:29.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:20:29.474 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37661 842
17-03-18 06:20:29.624 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:29.694 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:20:29.694 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:20:29.694 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:29.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:20:29.694 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:20:29.694 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:29.694 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:29.694 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:20:29.704 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:20:29.704 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:20:29.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:29.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:29.844 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:29.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:29.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:29.964 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:29.964 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:29.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 06:20:29.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:29.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:20:30.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:20:30.034 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:30.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37661 150' command took 2 ms to send, 1409 ms to get response, and 1412 ms overall
17-03-18 06:20:30.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:30.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171601413326671. ------
17-03-18 06:20:30.044 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:30.044 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17779 mm
17-03-18 06:20:30.044 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:30.044 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:20:30.044 -07 000000611 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:20:30.044 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38838, sync = True, waitForSettling = False)
17-03-18 06:20:30.044 -07 000000467 INF: Z Motor: Moving to -0.177789 mm, started at -0.171601 mm, distance = -6.19 um
17-03-18 06:20:30.044 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:30.054 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:30.054 -07 000000467 INF: FPGA: Xmit ZDACW 38838\n [Z Motor]
17-03-18 06:20:30.054 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:20:30.064 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:30.064 -07 000000467 INF: FPGA: 'ZDACW 38838' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:20:30.064 -07 000000585 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:20:30.074 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:30.074 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:20:30.074 -07 000000611 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:30.074 -07 000000611 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:30.074 -07 000000611 INF: Y Motor: Moving 1333 steps0
17-03-18 06:20:30.084 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:30.084 -07 000000585 INF: FPGA: Recv ZDACR 38838
17-03-18 06:20:30.094 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:30.094 -07 000000467 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:20:30.094 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:30.274 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:30.274 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:20:30.364 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:20:30.364 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:20:30.364 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:30.364 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:30.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:20:30.364 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:20:30.364 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:30.364 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:30.364 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 06:20:30.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:20:30.474 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:20:30.474 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 06:20:30.514 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:30.514 -07 000000502 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:20:30.524 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:30.524 -07 000000611 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:30.524 -07 000000611 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:20:30.524 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.833 mm, average velocity = 2.089 mm/sec
17-03-18 06:20:31.474 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:31.474 -07 000000474 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:20:31.484 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:31.484 -07 000000611 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:31.514 -07 000000611 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:31.514 -07 000000611 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:20:31.514 -07 000000611 INF: Y Motor: Moved to 60.7319 after 1468 ms (table move)
17-03-18 06:20:31.514 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177789 mm (DAC = 38838)
17-03-18 06:20:31.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.524 -07 000000585 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:20:31.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:20:31.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.524 -07 000000502 INF: FPGA: Recv ZSGSRD 36964
17-03-18 06:20:31.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:31.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.534 -07 000000447 INF: FPGA: Recv ZSGSRD 36961
17-03-18 06:20:31.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.544 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36968
17-03-18 06:20:31.554 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.554 -07 000000467 INF: FPGA: Recv ZSGSRD 36963
17-03-18 06:20:31.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.564 -07 000000502 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:20:31.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.574 -07 000000474 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:20:31.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.584 -07 000000474 INF: FPGA: Recv ZSGSRD 36961
17-03-18 06:20:31.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.594 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.594 -07 000000447 INF: FPGA: Recv ZSGSRD 36964
17-03-18 06:20:31.604 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.604 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:31.604 -07 000000502 INF: FPGA: Recv ZSGSRD 36961
17-03-18 06:20:31.614 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.614 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:31.614 -07 000000569 INF: FPGA: Recv ZPIEZORD 33133
17-03-18 06:20:31.624 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.5 V.
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36966 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36964 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36966, posNoise = 7, negNoise = 5
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: After move to -0.177789, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: Settle wait time = 1471 ms, measure time = 102 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:20:31.624 -07 000000579 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:31.674 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 06:20:31.674 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:31.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:31.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:31.674 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:31.674 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:31.674 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:31.674 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:31.674 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:31.674 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:31.684 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:31.684 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:31.694 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:20:31.694 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:20:31.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:31.734 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:31.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:32.034 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:32.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:32.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:32.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) start.
17-03-18 06:20:32.074 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:32.074 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:32.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:20:32.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575933136, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:20:32.164 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:32.164 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:20:32.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:20:32.274 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:32.274 -07 000000467 INF: Autofocus start
17-03-18 06:20:32.274 -07 000000467 INF: MeasureProfile start
17-03-18 06:20:32.274 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:32.284 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:32.284 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:32.284 -07 000000467 INF: MeasureProfile done
17-03-18 06:20:32.284 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:20:32.284 -07 000000467 INF: Autofocus finished
17-03-18 06:20:32.484 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:32.484 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:20:32.484 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.17780077804347. ----------
17-03-18 06:20:32.484 -07 000000610 INF: Cycle	148	Tile	2	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:32.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-18 06:20:32.494 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.177801 mm, distance = 6.81 um
17-03-18 06:20:32.494 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-18 06:20:32.494 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:20:32.504 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:32.504 -07 000000447 INF: FPGA: Recv ZDACR 37353
17-03-18 06:20:32.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:32.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:20:32.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:32.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:20:32.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:20:32.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.694 -07 000000474 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:20:32.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.704 -07 000000474 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:20:32.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:20:32.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.724 -07 000000467 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:20:32.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.734 -07 000000629 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:20:32.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.744 -07 000000629 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:20:32.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:32.754 -07 000000629 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:20:32.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:32.764 -07 000000467 INF: FPGA: Recv ZPIEZORD 31747
17-03-18 06:20:32.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:32.774 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 06:20:32.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35908 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35905 (-170.1 uncal um), Max = 35911 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:20:32.774 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35908, posNoise = 3, negNoise = 3
17-03-18 06:20:32.774 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:32.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:20:32.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:32.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:32.774 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:32.774 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:32.774 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:32.774 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:32.774 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:32.774 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:32.774 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:20:32.774 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:32.774 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:32.774 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:32.774 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:20:32.784 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:32.784 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:32.784 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:32.794 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:20:32.794 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:20:32.794 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:20:32.794 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:20:32.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37530 150\n [Camera]
17-03-18 06:20:32.994 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:33.454 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:33.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:33.454 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:33.454 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:33.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:20:33.464 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:33.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:33.464 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:33.464 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:33.464 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:20:33.654 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37530 842
17-03-18 06:20:33.794 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:33.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:20:33.854 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:20:33.854 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:33.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:20:33.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:20:33.854 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:33.864 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:33.864 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:33.864 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:20:33.864 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:20:34.014 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:34.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:34.024 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:34.024 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:34.024 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:20:34.024 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:34.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:34.024 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:34.024 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:34.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:20:34.214 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:20:34.214 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:34.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37530 150' command took 2 ms to send, 1402 ms to get response, and 1412 ms overall
17-03-18 06:20:34.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:34.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171003961597487. ------
17-03-18 06:20:34.334 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17784 mm
17-03-18 06:20:34.334 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:34.334 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:20:34.334 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:20:34.334 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38849, sync = True, waitForSettling = False)
17-03-18 06:20:34.334 -07 000000629 INF: Z Motor: Moving to -0.177839 mm, started at -0.171004 mm, distance = -6.84 um
17-03-18 06:20:34.344 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:34.344 -07 000000579 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:20:34.354 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:34.354 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:20:34.354 -07 000000502 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:34.354 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:34.354 -07 000000502 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:20:34.354 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:34.364 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:20:34.364 -07 000000629 INF: FPGA: Xmit ZDACW 38849\n [Z Motor]
17-03-18 06:20:34.364 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:20:34.374 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:34.374 -07 000000629 INF: FPGA: 'ZDACW 38849' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:20:34.384 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:34.394 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:34.394 -07 000000474 INF: FPGA: Recv ZDACR 38849
17-03-18 06:20:34.404 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:34.404 -07 000000629 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-18 06:20:34.414 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:20:34.414 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:20:34.414 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:34.424 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:20:34.424 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:20:34.424 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:34.424 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:20:34.424 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:20:34.424 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:20:34.434 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:20:34.584 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:34.584 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:20:34.654 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.019446,
17-03-18 06:20:34.744 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:20:34.744 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 396 ms overall
17-03-18 06:20:34.794 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:34.804 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:20:34.804 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:20:34.804 -07 000000502 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:34.804 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:20:34.804 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:20:35.754 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:35.754 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:20:35.764 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:35.764 -07 000000502 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:35.794 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:35.794 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:20:35.794 -07 000000502 INF: Y Motor: Moved to 61.5625 after 1454 ms (table move)
17-03-18 06:20:35.794 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177839 mm (DAC = 38849)
17-03-18 06:20:35.794 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36977
17-03-18 06:20:35.804 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:20:35.804 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.804 -07 000000447 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:20:35.814 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:20:35.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.824 -07 000000447 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:20:35.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:20:35.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.844 -07 000000579 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:20:35.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.854 -07 000000569 INF: FPGA: Recv ZSGSRD 36977
17-03-18 06:20:35.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.864 -07 000000579 INF: FPGA: Recv ZSGSRD 36965
17-03-18 06:20:35.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.874 -07 000000569 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:20:35.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:35.884 -07 000000569 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:20:35.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.894 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:35.894 -07 000000569 INF: FPGA: Recv ZPIEZORD 33162
17-03-18 06:20:35.904 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.4 V.
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36974 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36973 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36965 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36974, posNoise = 9, negNoise = 9
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: After move to -0.177839, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:20:35.904 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:35.954 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:20:35.954 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:35.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:35.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:35.954 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:35.954 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:35.954 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:35.954 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:35.954 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:35.954 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:35.964 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:35.964 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:35.974 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:20:35.974 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:20:35.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:36.024 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:36.324 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:36.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:36.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:36.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:20:36.354 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:36.364 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:36.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:20:36.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:20:36.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:36.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:20:36.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:20:36.464 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:36.464 -07 000000447 INF: Autofocus start
17-03-18 06:20:36.464 -07 000000447 INF: MeasureProfile start
17-03-18 06:20:36.464 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:36.474 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:36.474 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:36.474 -07 000000447 INF: MeasureProfile done
17-03-18 06:20:36.474 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:20:36.474 -07 000000447 INF: Autofocus finished
17-03-18 06:20:36.674 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:36.674 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:20:36.674 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177852171740605. ----------
17-03-18 06:20:36.674 -07 000000610 INF: Cycle	148	Tile	3	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:36.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-18 06:20:36.684 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.177852 mm, distance = 6.81 um
17-03-18 06:20:36.684 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-18 06:20:36.684 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:20:36.694 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:20:36.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:36.694 -07 000000569 INF: FPGA: Recv ZDACR 37364
17-03-18 06:20:36.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:36.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:36.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:36.854 -07 000000474 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:20:36.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:36.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.864 -07 000000447 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:20:36.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.874 -07 000000474 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:20:36.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.884 -07 000000502 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:20:36.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.894 -07 000000502 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:20:36.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.904 -07 000000438 INF: FPGA: Recv ZSGSRD 35919
17-03-18 06:20:36.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:20:36.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.924 -07 000000611 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:20:36.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.934 -07 000000438 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:20:36.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:36.944 -07 000000611 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:20:36.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:36.954 -07 000000474 INF: FPGA: Recv ZPIEZORD 31760
17-03-18 06:20:36.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:36.964 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 06:20:36.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35917 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35912 (-170.2 uncal um), Max = 35919 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:20:36.964 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 3, negNoise = 4
17-03-18 06:20:36.964 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:36.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:20:36.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:36.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:36.964 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:36.964 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:36.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:36.964 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:36.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:36.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:20:36.964 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:36.964 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:36.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:36.964 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:36.974 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:20:36.974 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:36.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:20:36.974 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:36.984 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:20:36.984 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:20:36.984 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:20:36.984 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:20:36.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37540 150\n [Camera]
17-03-18 06:20:37.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:37.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:37.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:37.644 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:37.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:37.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:37.644 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:37.654 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:37.654 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:20:37.654 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:37.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:20:37.834 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 845
17-03-18 06:20:37.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:38.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:20:38.024 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:20:38.024 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:38.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:20:38.024 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:20:38.024 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:38.024 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:20:38.034 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:38.034 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:20:38.034 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:20:38.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:38.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:38.204 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:38.204 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:38.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:38.204 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:38.204 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:38.204 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:20:38.214 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:38.214 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:20:38.394 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:20:38.394 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:38.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37540 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:20:38.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:38.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171055355294621. ------
17-03-18 06:20:38.404 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:38.404 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17728 mm
17-03-18 06:20:38.404 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:38.404 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:38.404 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:20:38.404 -07 000000579 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:20:38.404 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38727, sync = True, waitForSettling = False)
17-03-18 06:20:38.404 -07 000000447 INF: Z Motor: Moving to -0.177281 mm, started at -0.171055 mm, distance = -6.23 um
17-03-18 06:20:38.414 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:38.414 -07 000000447 INF: FPGA: Xmit ZDACW 38727\n [Z Motor]
17-03-18 06:20:38.414 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:20:38.424 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:38.424 -07 000000447 INF: FPGA: 'ZDACW 38727' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:38.434 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:38.434 -07 000000569 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:20:38.444 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:38.444 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:20:38.444 -07 000000579 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:38.444 -07 000000579 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:38.444 -07 000000579 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:20:38.444 -07 000000608 INF: FPGA: Recv ZDACR 38727
17-03-18 06:20:38.454 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:38.454 -07 000000447 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:20:38.454 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:38.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:20:38.604 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:20:38.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:38.604 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:20:38.604 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:20:38.604 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:38.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:38.614 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:38.614 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:20:38.614 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:20:38.624 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:38.624 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:20:38.824 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:20:38.824 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:20:38.884 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:38.884 -07 000000585 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:20:38.894 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:38.894 -07 000000579 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:38.894 -07 000000579 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:20:38.894 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 06:20:39.844 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:39.844 -07 000000502 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:20:39.854 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:39.854 -07 000000579 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:39.884 -07 000000579 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:39.884 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:20:39.884 -07 000000579 INF: Y Motor: Moved to 62.3945 after 1473 ms (table move)
17-03-18 06:20:39.884 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177281 mm (DAC = 38727)
17-03-18 06:20:39.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.884 -07 000000461 INF: FPGA: Recv ZSGSRD 36891
17-03-18 06:20:39.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:39.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.894 -07 000000608 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:20:39.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.904 -07 000000467 INF: FPGA: Recv ZSGSRD 36877
17-03-18 06:20:39.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.914 -07 000000480 INF: FPGA: Recv ZSGSRD 36881
17-03-18 06:20:39.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.924 -07 000000467 INF: FPGA: Recv ZSGSRD 36889
17-03-18 06:20:39.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36887
17-03-18 06:20:39.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.944 -07 000000467 INF: FPGA: Recv ZSGSRD 36891
17-03-18 06:20:39.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.954 -07 000000480 INF: FPGA: Recv ZSGSRD 36885
17-03-18 06:20:39.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.964 -07 000000467 INF: FPGA: Recv ZSGSRD 36891
17-03-18 06:20:39.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:39.974 -07 000000480 INF: FPGA: Recv ZSGSRD 36883
17-03-18 06:20:39.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.984 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:39.984 -07 000000461 INF: FPGA: Recv ZPIEZORD 33043
17-03-18 06:20:39.994 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.5 V.
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36886 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36886 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36877 (-176.3 uncal um), Max = 36891 (-176.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36886, posNoise = 5, negNoise = 9
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: After move to -0.177281, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: Settle wait time = 1475 ms, measure time = 106 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:20:39.994 -07 000000474 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:40.014 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.024884,
17-03-18 06:20:40.044 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:20:40.044 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:40.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:40.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:40.044 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:40.044 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:40.044 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:40.044 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:40.054 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:40.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:40.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:40.054 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:40.064 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:20:40.064 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:20:40.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:40.114 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:40.414 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:40.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:40.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:40.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:20:40.454 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:40.454 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:40.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:20:40.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:20:40.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:40.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:20:40.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:20:40.554 -07 000000438 INF: Autofocus start
17-03-18 06:20:40.554 -07 000000438 INF: MeasureProfile start
17-03-18 06:20:40.554 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:40.554 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:40.564 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:20:40.564 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:40.564 -07 000000438 INF: MeasureProfile done
17-03-18 06:20:40.564 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:20:40.564 -07 000000438 INF: Autofocus finished
17-03-18 06:20:40.764 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:40.764 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:20:40.764 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.17728684107213. ----------
17-03-18 06:20:40.764 -07 000000610 INF: Cycle	148	Tile	4	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:40.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37224, sync = True, waitForSettling = True)
17-03-18 06:20:40.774 -07 000000610 INF: Z Motor: Moving to -0.170401 mm, started at -0.177287 mm, distance = 6.89 um
17-03-18 06:20:40.774 -07 000000610 INF: FPGA: Xmit ZDACW 37224\n [Z Motor]
17-03-18 06:20:40.774 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:20:40.784 -07 000000610 INF: FPGA: 'ZDACW 37224' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:40.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:40.784 -07 000000480 INF: FPGA: Recv ZDACR 37224
17-03-18 06:20:40.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:40.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:40.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.944 -07 000000569 INF: FPGA: Recv ZSGSRD 35809
17-03-18 06:20:40.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:40.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.954 -07 000000467 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:20:40.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:40.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.964 -07 000000569 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:20:40.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:40.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.974 -07 000000611 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:20:40.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:40.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.984 -07 000000579 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:20:40.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:40.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:40.994 -07 000000438 INF: FPGA: Recv ZSGSRD 35813
17-03-18 06:20:41.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:41.004 -07 000000569 INF: FPGA: Recv ZSGSRD 35815
17-03-18 06:20:41.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:41.014 -07 000000611 INF: FPGA: Recv ZSGSRD 35822
17-03-18 06:20:41.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:41.024 -07 000000467 INF: FPGA: Recv ZSGSRD 35813
17-03-18 06:20:41.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:41.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:20:41.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:41.044 -07 000000608 INF: FPGA: Recv ZPIEZORD 31622
17-03-18 06:20:41.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:41.054 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 06:20:41.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35809 (-169.5 uncal um), Max = 35822 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:20:41.054 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 7, negNoise = 6
17-03-18 06:20:41.054 -07 000000610 INF: Z Motor: After move to -0.170401, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:41.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:20:41.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:41.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:41.054 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:41.054 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:41.054 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:41.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:41.054 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:41.054 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:41.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:41.054 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:41.054 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:41.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:41.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:20:41.054 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:41.054 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:41.064 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:41.064 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:20:41.064 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:20:41.074 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:20:41.074 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:20:41.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37401 150\n [Camera]
17-03-18 06:20:41.274 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:41.724 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:41.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:41.734 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:41.734 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:41.734 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:20:41.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:41.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:41.734 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:41.734 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:41.734 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:20:41.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:41.924 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37401 842
17-03-18 06:20:42.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:42.114 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:20:42.114 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:20:42.114 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:20:42.114 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:42.114 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:20:42.114 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:42.124 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:42.124 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:20:42.124 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:42.134 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:20:42.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:42.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:42.294 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:42.294 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:42.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:20:42.294 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:42.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:42.294 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:42.294 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:42.294 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:20:42.484 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:20:42.484 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:42.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37401 150' command took 2 ms to send, 1403 ms to get response, and 1411 ms overall
17-03-18 06:20:42.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:42.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170406509868304. ------
17-03-18 06:20:42.604 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:42.604 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17685 mm
17-03-18 06:20:42.604 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:42.614 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:20:42.614 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:20:42.614 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:42.614 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 06:20:42.614 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:42.614 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38634, sync = True, waitForSettling = False)
17-03-18 06:20:42.614 -07 000000447 INF: Z Motor: Moving to -0.176855 mm, started at -0.170407 mm, distance = -6.45 um
17-03-18 06:20:42.614 -07 000000608 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:20:42.624 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:20:42.624 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:42.624 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:42.624 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:20:42.624 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:42.634 -07 000000447 INF: FPGA: Xmit ZDACW 38634\n [Z Motor]
17-03-18 06:20:42.634 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:20:42.644 -07 000000447 INF: FPGA: 'ZDACW 38634' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:20:42.644 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:42.654 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:42.654 -07 000000467 INF: FPGA: Recv ZDACR 38634
17-03-18 06:20:42.664 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:20:42.664 -07 000000447 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:20:42.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:20:42.684 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:20:42.684 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:42.684 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:42.684 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:20:42.684 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:20:42.684 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:42.694 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:20:42.694 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:20:42.694 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:20:42.824 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:42.824 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 210 ms overall
17-03-18 06:20:43.014 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:20:43.014 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:20:43.074 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:43.074 -07 000000474 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:20:43.084 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:43.084 -07 000000462 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:43.084 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:20:43.084 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 06:20:44.034 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:44.034 -07 000000447 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:20:44.044 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:44.044 -07 000000462 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:44.074 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:44.074 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:20:44.074 -07 000000462 INF: Y Motor: Moved to 63.2222 after 1459 ms (table move)
17-03-18 06:20:44.074 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176855 mm (DAC = 38634)
17-03-18 06:20:44.074 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.074 -07 000000438 INF: FPGA: Recv ZSGSRD 36823
17-03-18 06:20:44.084 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:44.084 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.084 -07 000000438 INF: FPGA: Recv ZSGSRD 36831
17-03-18 06:20:44.094 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.094 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.094 -07 000000467 INF: FPGA: Recv ZSGSRD 36821
17-03-18 06:20:44.104 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.104 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.104 -07 000000474 INF: FPGA: Recv ZSGSRD 36820
17-03-18 06:20:44.114 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:44.114 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.114 -07 000000467 INF: FPGA: Recv ZSGSRD 36818
17-03-18 06:20:44.124 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.124 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.124 -07 000000474 INF: FPGA: Recv ZSGSRD 36814
17-03-18 06:20:44.134 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.134 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.134 -07 000000608 INF: FPGA: Recv ZSGSRD 36824
17-03-18 06:20:44.144 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.144 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36820
17-03-18 06:20:44.154 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.154 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.154 -07 000000608 INF: FPGA: Recv ZSGSRD 36822
17-03-18 06:20:44.164 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.164 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:44.164 -07 000000480 INF: FPGA: Recv ZSGSRD 36829
17-03-18 06:20:44.174 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.174 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:44.174 -07 000000608 INF: FPGA: Recv ZPIEZORD 32974
17-03-18 06:20:44.184 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.895 V. Piezo Error = -8.5 V.
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36822 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36822 (-176.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36814 (-175.9 uncal um), Max = 36831 (-176.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36822, posNoise = 9, negNoise = 8
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: After move to -0.176855, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:20:44.184 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:44.234 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:20:44.234 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:44.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:44.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:44.244 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:44.244 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:44.244 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:44.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:44.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:44.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:44.254 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:44.254 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:44.254 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:20:44.254 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:20:44.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:44.304 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:44.604 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:44.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:44.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:44.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:20:44.644 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:44.644 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:44.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:20:44.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:20:44.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:44.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:20:44.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:20:44.744 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:44.744 -07 000000462 INF: Autofocus start
17-03-18 06:20:44.744 -07 000000462 INF: MeasureProfile start
17-03-18 06:20:44.744 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:44.754 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:44.754 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:44.754 -07 000000462 INF: MeasureProfile done
17-03-18 06:20:44.754 -07 000000462 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:20:44.754 -07 000000462 INF: Autofocus finished
17-03-18 06:20:44.954 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:44.954 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:20:44.954 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.176875691495057. ----------
17-03-18 06:20:44.954 -07 000000610 INF: Cycle	148	Tile	5	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:44.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37095, sync = True, waitForSettling = True)
17-03-18 06:20:44.964 -07 000000610 INF: Z Motor: Moving to -0.169810 mm, started at -0.176876 mm, distance = 7.07 um
17-03-18 06:20:44.964 -07 000000610 INF: FPGA: Xmit ZDACW 37095\n [Z Motor]
17-03-18 06:20:44.964 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:20:44.974 -07 000000610 INF: FPGA: 'ZDACW 37095' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:44.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:44.974 -07 000000438 INF: FPGA: Recv ZDACR 37095
17-03-18 06:20:44.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:44.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:45.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35726
17-03-18 06:20:45.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:45.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.144 -07 000000502 INF: FPGA: Recv ZSGSRD 35725
17-03-18 06:20:45.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35717
17-03-18 06:20:45.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.164 -07 000000502 INF: FPGA: Recv ZSGSRD 35723
17-03-18 06:20:45.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.174 -07 000000474 INF: FPGA: Recv ZSGSRD 35727
17-03-18 06:20:45.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.184 -07 000000611 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:20:45.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.194 -07 000000474 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:20:45.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35729
17-03-18 06:20:45.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.214 -07 000000474 INF: FPGA: Recv ZSGSRD 35724
17-03-18 06:20:45.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:45.224 -07 000000502 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:20:45.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:45.234 -07 000000474 INF: FPGA: Recv ZPIEZORD 31496
17-03-18 06:20:45.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:45.244 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.3 V.
17-03-18 06:20:45.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35724 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35724 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35729 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:20:45.244 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35724, posNoise = 5, negNoise = 7
17-03-18 06:20:45.244 -07 000000610 INF: Z Motor: After move to -0.169810, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:45.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:20:45.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:45.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:45.244 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:45.244 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:45.244 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:45.244 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:45.244 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:45.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:45.244 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:20:45.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:45.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:45.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:45.254 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:45.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:20:45.254 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:45.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:45.264 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:20:45.264 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:20:45.264 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:20:45.264 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:20:45.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37272 150\n [Camera]
17-03-18 06:20:45.384 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.007176,
17-03-18 06:20:45.464 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:45.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:45.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:45.924 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:45.924 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:45.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:45.924 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:45.934 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:45.934 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:20:45.934 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:45.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:20:46.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37272 842
17-03-18 06:20:46.264 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:46.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:20:46.324 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:20:46.324 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:46.324 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:20:46.324 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:20:46.324 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:46.324 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:46.324 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:20:46.324 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:46.334 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:20:46.484 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:46.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:46.484 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:46.494 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:46.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:46.494 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:46.504 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:46.504 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:20:46.504 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:46.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:20:46.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:20:46.674 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:46.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37272 150' command took 2 ms to send, 1399 ms to get response, and 1411 ms overall
17-03-18 06:20:46.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:46.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.169821906563403. ------
17-03-18 06:20:46.684 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:46.804 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17607 mm
17-03-18 06:20:46.804 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:46.804 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:46.804 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:20:46.804 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 06:20:46.804 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38462, sync = True, waitForSettling = False)
17-03-18 06:20:46.804 -07 000000480 INF: Z Motor: Moving to -0.176068 mm, started at -0.169822 mm, distance = -6.25 um
17-03-18 06:20:46.814 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 06:20:46.814 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:46.814 -07 000000462 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:20:46.824 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:20:46.824 -07 000000480 INF: FPGA: Xmit ZDACW 38462\n [Z Motor]
17-03-18 06:20:46.824 -07 000000447 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:46.824 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:20:46.824 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:46.824 -07 000000447 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:20:46.834 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:46.834 -07 000000480 INF: FPGA: 'ZDACW 38462' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:20:46.844 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:46.854 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:46.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:46.854 -07 000000569 INF: FPGA: Recv ZDACR 38462
17-03-18 06:20:46.864 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:46.864 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:20:46.894 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:20:46.894 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:20:46.894 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:46.894 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:20:46.894 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:20:46.894 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:46.904 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:46.904 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:20:46.904 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:46.904 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:20:47.034 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:47.034 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:20:47.214 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:20:47.214 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:20:47.264 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:47.274 -07 000000629 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:20:47.284 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:47.284 -07 000000447 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:47.284 -07 000000447 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:20:47.284 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-18 06:20:48.234 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:48.234 -07 000000502 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:20:48.244 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:48.244 -07 000000447 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:48.274 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:48.274 -07 000000447 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:20:48.274 -07 000000447 INF: Y Motor: Moved to 64.0557 after 1462 ms (table move)
17-03-18 06:20:48.274 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176068 mm (DAC = 38462)
17-03-18 06:20:48.274 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.274 -07 000000447 INF: FPGA: Recv ZSGSRD 36695
17-03-18 06:20:48.284 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:48.284 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.284 -07 000000447 INF: FPGA: Recv ZSGSRD 36697
17-03-18 06:20:48.294 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.294 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.294 -07 000000438 INF: FPGA: Recv ZSGSRD 36697
17-03-18 06:20:48.304 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.304 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.304 -07 000000467 INF: FPGA: Recv ZSGSRD 36695
17-03-18 06:20:48.314 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.314 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.314 -07 000000467 INF: FPGA: Recv ZSGSRD 36691
17-03-18 06:20:48.324 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.324 -07 000000480 INF: FPGA: Recv ZSGSRD 36700
17-03-18 06:20:48.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.334 -07 000000467 INF: FPGA: Recv ZSGSRD 36699
17-03-18 06:20:48.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.344 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.344 -07 000000569 INF: FPGA: Recv ZSGSRD 36698
17-03-18 06:20:48.354 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.354 -07 000000462 INF: FPGA: Recv ZSGSRD 36701
17-03-18 06:20:48.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:48.364 -07 000000608 INF: FPGA: Recv ZSGSRD 36694
17-03-18 06:20:48.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.374 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:48.374 -07 000000447 INF: FPGA: Recv ZPIEZORD 32846
17-03-18 06:20:48.384 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.5 V.
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36697 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36697 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36691 (-175.1 uncal um), Max = 36701 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36697, posNoise = 4, negNoise = 6
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: After move to -0.176068, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 06:20:48.384 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:48.434 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 06:20:48.434 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:48.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:48.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:48.434 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:48.434 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:48.434 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:48.434 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:48.434 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:20:48.434 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:48.444 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:48.444 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:48.444 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:20:48.444 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:20:48.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:48.504 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:48.804 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:48.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:48.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:48.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:20:48.834 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:48.834 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:48.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 06:20:48.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:20:48.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:48.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:20:48.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:20:48.934 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:48.934 -07 000000608 INF: Autofocus start
17-03-18 06:20:48.934 -07 000000608 INF: MeasureProfile start
17-03-18 06:20:48.934 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:48.944 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:48.944 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:48.954 -07 000000608 INF: MeasureProfile done
17-03-18 06:20:48.954 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:20:48.954 -07 000000608 INF: Autofocus finished
17-03-18 06:20:49.144 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:49.144 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:20:49.144 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176072664977337. ----------
17-03-18 06:20:49.144 -07 000000610 INF: Cycle	148	Tile	6	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:49.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36994, sync = True, waitForSettling = True)
17-03-18 06:20:49.154 -07 000000610 INF: Z Motor: Moving to -0.169348 mm, started at -0.176073 mm, distance = 6.72 um
17-03-18 06:20:49.154 -07 000000610 INF: FPGA: Xmit ZDACW 36994\n [Z Motor]
17-03-18 06:20:49.154 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:20:49.164 -07 000000610 INF: FPGA: 'ZDACW 36994' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:49.164 -07 000000438 INF: FPGA: Recv ZDACR 36994
17-03-18 06:20:49.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:49.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.324 -07 000000438 INF: FPGA: Recv ZSGSRD 35650
17-03-18 06:20:49.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:49.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.334 -07 000000438 INF: FPGA: Recv ZSGSRD 35654
17-03-18 06:20:49.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.344 -07 000000438 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:20:49.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.354 -07 000000438 INF: FPGA: Recv ZSGSRD 35649
17-03-18 06:20:49.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.364 -07 000000438 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:20:49.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.374 -07 000000474 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:20:49.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:20:49.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35655
17-03-18 06:20:49.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.404 -07 000000608 INF: FPGA: Recv ZSGSRD 35649
17-03-18 06:20:49.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:49.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:20:49.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:49.424 -07 000000608 INF: FPGA: Recv ZPIEZORD 31444
17-03-18 06:20:49.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:49.434 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.3 V.
17-03-18 06:20:49.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35652 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35651 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35656 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:20:49.434 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35652, posNoise = 4, negNoise = 4
17-03-18 06:20:49.434 -07 000000610 INF: Z Motor: After move to -0.169348, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:49.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:20:49.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:49.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:49.434 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:49.434 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:49.434 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:49.434 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:49.434 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:49.434 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:49.434 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:49.434 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:49.434 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:49.434 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:49.444 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:20:49.444 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:49.444 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:49.444 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:49.454 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:20:49.454 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:20:49.454 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:20:49.454 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:20:49.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37171 150\n [Camera]
17-03-18 06:20:49.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:50.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:50.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:50.114 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:50.124 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:50.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:50.124 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:50.124 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:50.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:20:50.124 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:50.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:20:50.314 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37171 842
17-03-18 06:20:50.454 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:50.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:20:50.494 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:20:50.494 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:50.504 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:50.504 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:20:50.504 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:20:50.504 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:50.504 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:50.504 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:20:50.514 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:20:50.684 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:50.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:50.684 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:50.684 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:50.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:20:50.684 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:50.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:50.684 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:50.684 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:50.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:20:50.754 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.996267,
17-03-18 06:20:50.874 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:20:50.874 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:50.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37171 150' command took 2 ms to send, 1402 ms to get response, and 1412 ms overall
17-03-18 06:20:50.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:50.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169359363289197. ------
17-03-18 06:20:50.874 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:50.874 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17576 mm
17-03-18 06:20:50.874 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:50.874 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:20:50.884 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:20:50.884 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:50.884 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:50.884 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:20:50.884 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False)
17-03-18 06:20:50.884 -07 000000447 INF: Z Motor: Moving to -0.175756 mm, started at -0.169359 mm, distance = -6.40 um
17-03-18 06:20:50.884 -07 000000480 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:20:50.894 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:50.894 -07 000000447 INF: FPGA: Xmit ZDACW 38394\n [Z Motor]
17-03-18 06:20:50.894 -07 000000611 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:50.894 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:50.894 -07 000000611 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:20:50.894 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:20:50.904 -07 000000447 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:20:50.904 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:50.914 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:50.924 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:50.924 -07 000000438 INF: FPGA: Recv ZDACR 38394
17-03-18 06:20:50.934 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:20:50.934 -07 000000447 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:20:51.084 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:20:51.084 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:20:51.084 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:51.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:20:51.084 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:20:51.084 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:51.084 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:51.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:20:51.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:20:51.094 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:20:51.104 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:51.104 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 06:20:51.284 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:20:51.284 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:20:51.334 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:51.344 -07 000000502 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:20:51.344 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:20:51.344 -07 000000611 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:51.344 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:20:51.344 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 06:20:51.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:52.294 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:52.294 -07 000000474 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:20:52.304 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:52.304 -07 000000611 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:52.334 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:52.334 -07 000000611 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:20:52.334 -07 000000611 INF: Y Motor: Moved to 64.8774 after 1452 ms (table move)
17-03-18 06:20:52.334 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394)
17-03-18 06:20:52.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.344 -07 000000502 INF: FPGA: Recv ZSGSRD 36652
17-03-18 06:20:52.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:20:52.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.344 -07 000000585 INF: FPGA: Recv ZSGSRD 36646
17-03-18 06:20:52.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:52.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.354 -07 000000585 INF: FPGA: Recv ZSGSRD 36646
17-03-18 06:20:52.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.364 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.364 -07 000000585 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:20:52.374 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.374 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.374 -07 000000608 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:20:52.384 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.384 -07 000000608 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:20:52.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.394 -07 000000608 INF: FPGA: Recv ZSGSRD 36641
17-03-18 06:20:52.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.404 -07 000000608 INF: FPGA: Recv ZSGSRD 36649
17-03-18 06:20:52.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.414 -07 000000608 INF: FPGA: Recv ZSGSRD 36652
17-03-18 06:20:52.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:52.424 -07 000000608 INF: FPGA: Recv ZSGSRD 36646
17-03-18 06:20:52.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.434 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:52.434 -07 000000608 INF: FPGA: Recv ZPIEZORD 32777
17-03-18 06:20:52.444 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.6 V.
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36649 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36650 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36641 (-174.8 uncal um), Max = 36654 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36649, posNoise = 5, negNoise = 8
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: After move to -0.175756, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:20:52.444 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:52.494 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 06:20:52.494 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:52.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:52.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:52.494 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:52.494 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:52.494 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:52.494 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:52.494 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:52.494 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:52.504 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:52.504 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:52.504 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:20:52.504 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:20:52.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:52.554 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:52.854 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:52.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:52.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:52.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:20:52.894 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:52.894 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:52.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:20:52.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:20:52.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:52.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:20:52.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:20:52.994 -07 000000447 INF: Autofocus start
17-03-18 06:20:52.994 -07 000000447 INF: MeasureProfile start
17-03-18 06:20:52.994 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:53.004 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:53.004 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-18 06:20:53.004 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:53.004 -07 000000447 INF: MeasureProfile done
17-03-18 06:20:53.004 -07 000000447 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:20:53.004 -07 000000447 INF: Autofocus finished
17-03-18 06:20:53.204 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:53.204 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 06:20:53.204 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175764302794532. ----------
17-03-18 06:20:53.214 -07 000000610 INF: Cycle	148	Tile	7	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:53.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36927, sync = True, waitForSettling = True)
17-03-18 06:20:53.214 -07 000000610 INF: Z Motor: Moving to -0.169041 mm, started at -0.175764 mm, distance = 6.72 um
17-03-18 06:20:53.214 -07 000000610 INF: FPGA: Xmit ZDACW 36927\n [Z Motor]
17-03-18 06:20:53.214 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:20:53.224 -07 000000610 INF: FPGA: 'ZDACW 36927' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:53.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:53.224 -07 000000447 INF: FPGA: Recv ZDACR 36927
17-03-18 06:20:53.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:53.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 06:20:53.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:20:53.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35605
17-03-18 06:20:53.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35605
17-03-18 06:20:53.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:20:53.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.434 -07 000000474 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:20:53.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.444 -07 000000467 INF: FPGA: Recv ZSGSRD 35609
17-03-18 06:20:53.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35608
17-03-18 06:20:53.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:20:53.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:53.474 -07 000000447 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:20:53.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:53.484 -07 000000480 INF: FPGA: Recv ZPIEZORD 31347
17-03-18 06:20:53.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:53.494 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.4 V.
17-03-18 06:20:53.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35600 (-168.2 uncal um), Max = 35609 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:20:53.494 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 5, negNoise = 4
17-03-18 06:20:53.494 -07 000000610 INF: Z Motor: After move to -0.169041, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:53.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:20:53.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:53.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:53.494 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:53.494 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:53.494 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:53.494 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:53.494 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:53.494 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:53.494 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:53.494 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:53.494 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:53.494 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:53.504 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:53.504 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:53.504 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:20:53.504 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:53.514 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:20:53.514 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:20:53.514 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:20:53.514 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:20:53.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37104 150\n [Camera]
17-03-18 06:20:53.714 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:54.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:54.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:54.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:54.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:54.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:20:54.174 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:54.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:54.174 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:54.174 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:54.174 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:20:54.364 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37104 842
17-03-18 06:20:54.514 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:54.564 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:20:54.564 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:20:54.564 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:54.574 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:20:54.574 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:20:54.574 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:54.574 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:54.574 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:20:54.574 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:54.584 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:20:54.734 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:54.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:54.734 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:54.734 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:54.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:20:54.734 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:54.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:54.744 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:54.744 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:54.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:20:54.924 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:20:54.924 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:54.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37104 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-18 06:20:54.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:54.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169051001106392. ------
17-03-18 06:20:54.934 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:54.934 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17568 mm
17-03-18 06:20:54.934 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:54.934 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:54.934 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:20:54.934 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:20:54.934 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38378, sync = True, waitForSettling = False)
17-03-18 06:20:54.934 -07 000000474 INF: Z Motor: Moving to -0.175683 mm, started at -0.169051 mm, distance = -6.63 um
17-03-18 06:20:54.944 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:54.944 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:55.064 -07 000000474 INF: FPGA: Xmit ZDACW 38378\n [Z Motor]
17-03-18 06:20:55.064 -07 000000480 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:20:55.064 -07 000000462 INF: FPGA: 'YRDPOS' command took 117 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 06:20:55.064 -07 000000462 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:55.064 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:55.064 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:20:55.064 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:20:55.074 -07 000000474 INF: FPGA: 'ZDACW 38378' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 06:20:55.074 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:55.074 -07 000000447 INF: FPGA: Recv ZDACR 38378
17-03-18 06:20:55.084 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:55.084 -07 000000474 INF: Z Motor: MoveAbsStepped took 145 ms (did NOT wait for settling yet))
17-03-18 06:20:55.084 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:55.094 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:55.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:20:55.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:20:55.134 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:55.134 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:20:55.134 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:20:55.134 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:55.144 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:55.144 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:20:55.144 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:20:55.154 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:20:55.284 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:55.284 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 225 ms overall
17-03-18 06:20:55.464 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:20:55.464 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 06:20:55.524 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:55.524 -07 000000447 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:20:55.534 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:55.534 -07 000000462 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:55.534 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:20:55.534 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.845 mm, average velocity = 2.077 mm/sec
17-03-18 06:20:56.124 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.985358,
17-03-18 06:20:56.484 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:56.484 -07 000000480 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:20:56.494 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:20:56.494 -07 000000462 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:56.534 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.010208, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:20:56.534 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:20:56.534 -07 000000462 INF: Y Motor: Moved to 65.7124 after 1596 ms (table move)
17-03-18 06:20:56.534 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175683 mm (DAC = 38378)
17-03-18 06:20:56.534 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.534 -07 000000608 INF: FPGA: Recv ZSGSRD 36634
17-03-18 06:20:56.544 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:20:56.544 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.544 -07 000000461 INF: FPGA: Recv ZSGSRD 36633
17-03-18 06:20:56.554 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.554 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.554 -07 000000611 INF: FPGA: Recv ZSGSRD 36631
17-03-18 06:20:56.564 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.564 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.564 -07 000000629 INF: FPGA: Recv ZSGSRD 36637
17-03-18 06:20:56.574 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.574 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.574 -07 000000480 INF: FPGA: Recv ZSGSRD 36640
17-03-18 06:20:56.584 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.584 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.584 -07 000000461 INF: FPGA: Recv ZSGSRD 36638
17-03-18 06:20:56.594 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.594 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.594 -07 000000608 INF: FPGA: Recv ZSGSRD 36636
17-03-18 06:20:56.604 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.604 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.604 -07 000000474 INF: FPGA: Recv ZSGSRD 36641
17-03-18 06:20:56.614 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.614 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.614 -07 000000579 INF: FPGA: Recv ZSGSRD 36639
17-03-18 06:20:56.624 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.624 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:56.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36633
17-03-18 06:20:56.634 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.634 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:56.634 -07 000000592 INF: FPGA: Recv ZPIEZORD 32778
17-03-18 06:20:56.644 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.5 V.
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36641 (-174.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 5, negNoise = 5
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: After move to -0.175683, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: Settle wait time = 1599 ms, measure time = 107 ms (allowed 150 ms), total time = 1706 ms
17-03-18 06:20:56.644 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:20:56.694 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1759 ms
17-03-18 06:20:56.694 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:20:56.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:56.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:56.694 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:56.694 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:56.694 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:20:56.694 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:56.694 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:56.694 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:20:56.704 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:20:56.704 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:20:56.704 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:20:56.704 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:20:56.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:20:56.754 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:20:56.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:20:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:20:57.054 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:20:57.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:20:57.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:20:57.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:20:57.094 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:20:57.094 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:20:57.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:20:57.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:20:57.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:57.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:20:57.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:20:57.194 -07 000000629 INF: Autofocus start
17-03-18 06:20:57.194 -07 000000629 INF: MeasureProfile start
17-03-18 06:20:57.194 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:57.194 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:57.204 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:20:57.204 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:20:57.204 -07 000000629 INF: MeasureProfile done
17-03-18 06:20:57.204 -07 000000629 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:20:57.204 -07 000000629 INF: Autofocus finished
17-03-18 06:20:57.404 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:20:57.404 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:20:57.404 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71240234375, Z-position -0.175680788036689. ----------
17-03-18 06:20:57.404 -07 000000610 INF: Cycle	148	Tile	8	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:20:57.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36928, sync = True, waitForSettling = True)
17-03-18 06:20:57.414 -07 000000610 INF: Z Motor: Moving to -0.169046 mm, started at -0.175681 mm, distance = 6.64 um
17-03-18 06:20:57.414 -07 000000610 INF: FPGA: Xmit ZDACW 36928\n [Z Motor]
17-03-18 06:20:57.414 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:20:57.424 -07 000000610 INF: FPGA: 'ZDACW 36928' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:20:57.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:57.424 -07 000000592 INF: FPGA: Recv ZDACR 36928
17-03-18 06:20:57.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:20:57.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.584 -07 000000467 INF: FPGA: Recv ZSGSRD 35605
17-03-18 06:20:57.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35603
17-03-18 06:20:57.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.604 -07 000000480 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:20:57.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.614 -07 000000462 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:20:57.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35608
17-03-18 06:20:57.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.634 -07 000000608 INF: FPGA: Recv ZSGSRD 35606
17-03-18 06:20:57.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.644 -07 000000611 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:20:57.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:20:57.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.664 -07 000000579 INF: FPGA: Recv ZSGSRD 35608
17-03-18 06:20:57.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:20:57.674 -07 000000592 INF: FPGA: Recv ZSGSRD 35606
17-03-18 06:20:57.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:20:57.684 -07 000000611 INF: FPGA: Recv ZPIEZORD 31375
17-03-18 06:20:57.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:57.694 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 06:20:57.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35605 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35600 (-168.2 uncal um), Max = 35608 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:20:57.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35605, posNoise = 3, negNoise = 5
17-03-18 06:20:57.694 -07 000000610 INF: Z Motor: After move to -0.169046, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:20:57.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:20:57.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:20:57.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:20:57.694 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:20:57.694 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:20:57.694 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:20:57.694 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:20:57.694 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:20:57.694 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:20:57.694 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:20:57.694 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:20:57.694 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:20:57.694 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:20:57.704 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:20:57.704 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:20:57.704 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:20:57.704 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:20:57.714 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:20:57.714 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:20:57.714 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:20:57.714 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:20:57.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37105 150\n [Camera]
17-03-18 06:20:57.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:20:58.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:20:58.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:20:58.374 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:58.374 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:20:58.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:20:58.374 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:58.374 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:58.374 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:20:58.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:58.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:20:58.564 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37105 842
17-03-18 06:20:58.714 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:20:58.774 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:20:58.774 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:20:58.774 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:58.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:20:58.774 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:20:58.774 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:58.774 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:58.774 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:20:58.774 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:20:58.784 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:20:58.934 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:20:58.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:20:58.934 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:20:58.944 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:20:58.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:20:58.944 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:20:58.944 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:20:58.944 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:20:58.944 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:20:58.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:20:59.124 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:20:59.124 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:20:59.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37105 150' command took 2 ms to send, 1407 ms to get response, and 1412 ms overall
17-03-18 06:20:59.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:20:59.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71240234375, Z-Position -0.169057425318534. ------
17-03-18 06:20:59.134 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:20:59.134 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17550 mm
17-03-18 06:20:59.134 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:20:59.254 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:20:59.254 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 06:20:59.254 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:20:59.254 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38337, sync = True, waitForSettling = False)
17-03-18 06:20:59.254 -07 000000462 INF: Z Motor: Moving to -0.175496 mm, started at -0.169057 mm, distance = -6.44 um
17-03-18 06:20:59.254 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:20:59.254 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7124 mm, delta = 0.8402 mm
17-03-18 06:20:59.264 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:59.264 -07 000000579 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:20:59.274 -07 000000462 INF: FPGA: Xmit ZDACW 38337\n [Z Motor]
17-03-18 06:20:59.274 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:20:59.274 -07 000000585 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:59.274 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:20:59.274 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:20:59.274 -07 000000585 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:20:59.284 -07 000000462 INF: FPGA: 'ZDACW 38337' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:20:59.284 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:20:59.284 -07 000000474 INF: FPGA: Recv ZDACR 38337
17-03-18 06:20:59.294 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:20:59.294 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:20:59.294 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:20:59.334 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:20:59.334 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:20:59.334 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:59.334 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:59.344 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:20:59.344 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:20:59.344 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:20:59.344 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:20:59.344 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:20:59.354 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:20:59.454 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:20:59.454 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 06:20:59.664 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:20:59.664 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:20:59.714 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:20:59.724 -07 000000629 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:20:59.724 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:20:59.724 -07 000000585 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:20:59.724 -07 000000585 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:20:59.724 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-18 06:21:00.674 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:00.674 -07 000000629 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:21:00.684 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.684 -07 000000585 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:00.714 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:00.714 -07 000000585 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:00.714 -07 000000585 INF: Y Motor: Moved to 66.5376 after 1459 ms (table move)
17-03-18 06:21:00.714 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175496 mm (DAC = 38337)
17-03-18 06:21:00.714 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.724 -07 000000606 INF: FPGA: Recv ZSGSRD 36607
17-03-18 06:21:00.724 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:00.724 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.724 -07 000000629 INF: FPGA: Recv ZSGSRD 36612
17-03-18 06:21:00.734 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.734 -07 000000462 INF: FPGA: Recv ZSGSRD 36616
17-03-18 06:21:00.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.744 -07 000000592 INF: FPGA: Recv ZSGSRD 36611
17-03-18 06:21:00.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.754 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.754 -07 000000608 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:21:00.764 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:00.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.764 -07 000000585 INF: FPGA: Recv ZSGSRD 36605
17-03-18 06:21:00.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.774 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.774 -07 000000611 INF: FPGA: Recv ZSGSRD 36604
17-03-18 06:21:00.784 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.784 -07 000000447 INF: FPGA: Recv ZSGSRD 36605
17-03-18 06:21:00.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.794 -07 000000608 INF: FPGA: Recv ZSGSRD 36611
17-03-18 06:21:00.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:00.804 -07 000000447 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:21:00.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.814 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:00.814 -07 000000608 INF: FPGA: Recv ZPIEZORD 32741
17-03-18 06:21:00.824 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.6 V.
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36609 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36608 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36604 (-174.6 uncal um), Max = 36616 (-174.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36609, posNoise = 7, negNoise = 5
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: After move to -0.175496, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: Settle wait time = 1462 ms, measure time = 103 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:21:00.824 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:00.874 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 06:21:00.874 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:00.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:00.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:00.874 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:00.874 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:00.874 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:00.874 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:00.874 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:00.874 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:00.874 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:00.874 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:00.884 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:00.884 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:21:00.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:00.934 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:01.234 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:01.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:01.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:01.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:01.274 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:01.274 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:01.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:21:01.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:21:01.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:01.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:01.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:21:01.374 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:01.374 -07 000000611 INF: Autofocus start
17-03-18 06:21:01.374 -07 000000611 INF: MeasureProfile start
17-03-18 06:21:01.374 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:01.384 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:01.384 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:01.384 -07 000000611 INF: MeasureProfile done
17-03-18 06:21:01.384 -07 000000611 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:21:01.384 -07 000000611 INF: Autofocus finished
17-03-18 06:21:01.494 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.962185,
17-03-18 06:21:01.584 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:01.584 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:01.584 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175507334308862. ----------
17-03-18 06:21:01.594 -07 000000610 INF: Cycle	148	Tile	9	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:01.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36852, sync = True, waitForSettling = True)
17-03-18 06:21:01.594 -07 000000610 INF: Z Motor: Moving to -0.168698 mm, started at -0.175507 mm, distance = 6.81 um
17-03-18 06:21:01.594 -07 000000610 INF: FPGA: Xmit ZDACW 36852\n [Z Motor]
17-03-18 06:21:01.594 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:21:01.604 -07 000000610 INF: FPGA: 'ZDACW 36852' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:21:01.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:01.604 -07 000000629 INF: FPGA: Recv ZDACR 36852
17-03-18 06:21:01.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:01.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.764 -07 000000629 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:21:01.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:01.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.774 -07 000000585 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:21:01.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.784 -07 000000629 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:21:01.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.794 -07 000000585 INF: FPGA: Recv ZSGSRD 35547
17-03-18 06:21:01.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.824 -07 000000501 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:21:01.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:01.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.834 -07 000000480 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:21:01.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.854 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:01.854 -07 000000462 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:21:01.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:01.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.884 -07 000000585 INF: FPGA: Recv ZSGSRD 35547
17-03-18 06:21:01.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:01.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.894 -07 000000585 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:21:01.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:01.904 -07 000000629 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:21:01.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:01.914 -07 000000585 INF: FPGA: Recv ZPIEZORD 31319
17-03-18 06:21:01.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:01.924 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.3 V.
17-03-18 06:21:01.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35550 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35549 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35547 (-167.8 uncal um), Max = 35554 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:21:01.924 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35550, posNoise = 4, negNoise = 3
17-03-18 06:21:01.924 -07 000000610 INF: Z Motor: After move to -0.168698, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:01.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-18 06:21:01.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:01.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:01.924 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:01.924 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:01.924 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:01.924 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:01.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:01.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:01.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:01.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:01.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:01.924 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:01.934 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:01.934 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:01.934 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:21:01.934 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:01.944 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:21:01.944 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:01.944 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:01.944 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:01.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37029 150\n [Camera]
17-03-18 06:21:02.144 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:21:02.604 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:02.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:02.604 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:02.604 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:02.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:02.604 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:02.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:02.604 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:02.614 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:02.614 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:21:02.794 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37029 842
17-03-18 06:21:02.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 993
17-03-18 06:21:03.004 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:21:03.004 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:21:03.004 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:03.004 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:03.004 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:03.004 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:21:03.004 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:21:03.004 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:03.014 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:03.014 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:21:03.164 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:03.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:03.164 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:03.164 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:03.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:03.164 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:03.164 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:21:03.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:03.164 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:03.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:21:03.354 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:21:03.354 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:03.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37029 150' command took 2 ms to send, 1405 ms to get response, and 1411 ms overall
17-03-18 06:21:03.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:03.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168704093650737. ------
17-03-18 06:21:03.364 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:03.364 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17542 mm
17-03-18 06:21:03.364 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:03.364 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:03.364 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:21:03.364 -07 000000611 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:21:03.364 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38320, sync = True, waitForSettling = False)
17-03-18 06:21:03.364 -07 000000382 INF: Z Motor: Moving to -0.175418 mm, started at -0.168704 mm, distance = -6.71 um
17-03-18 06:21:03.374 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:03.374 -07 000000382 INF: FPGA: Xmit ZDACW 38320\n [Z Motor]
17-03-18 06:21:03.374 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:03.384 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:03.384 -07 000000382 INF: FPGA: 'ZDACW 38320' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:21:03.384 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:21:03.394 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:21:03.394 -07 000000611 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:03.394 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:03.394 -07 000000611 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:03.394 -07 000000611 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:21:03.404 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:03.404 -07 000000585 INF: FPGA: Recv ZDACR 38320
17-03-18 06:21:03.414 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:03.414 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:21:03.414 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:03.574 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:21:03.574 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:21:03.574 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:03.574 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:21:03.574 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:21:03.574 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:03.574 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:03.574 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:21:03.574 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:03.584 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:21:03.594 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:03.594 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:21:03.784 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:21:03.784 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:21:03.844 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:03.844 -07 000000447 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:21:03.854 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:03.854 -07 000000611 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:03.854 -07 000000611 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:21:03.854 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 06:21:04.804 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:04.804 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:21:04.814 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:04.814 -07 000000611 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:04.844 -07 000000611 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:04.844 -07 000000611 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:04.844 -07 000000611 INF: Y Motor: Moved to 67.3706 after 1477 ms (table move)
17-03-18 06:21:04.844 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175418 mm (DAC = 38320)
17-03-18 06:21:04.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.844 -07 000000461 INF: FPGA: Recv ZSGSRD 36596
17-03-18 06:21:04.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:04.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.854 -07 000000462 INF: FPGA: Recv ZSGSRD 36594
17-03-18 06:21:04.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.864 -07 000000480 INF: FPGA: Recv ZSGSRD 36591
17-03-18 06:21:04.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.874 -07 000000606 INF: FPGA: Recv ZSGSRD 36590
17-03-18 06:21:04.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.884 -07 000000480 INF: FPGA: Recv ZSGSRD 36601
17-03-18 06:21:04.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.894 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.894 -07 000000592 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:21:04.904 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.904 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.904 -07 000000479 INF: FPGA: Recv ZSGSRD 36591
17-03-18 06:21:04.914 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.914 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.914 -07 000000592 INF: FPGA: Recv ZSGSRD 36597
17-03-18 06:21:04.924 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.924 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.924 -07 000000382 INF: FPGA: Recv ZSGSRD 36596
17-03-18 06:21:04.934 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.934 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:04.934 -07 000000479 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:21:04.944 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.944 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:04.944 -07 000000382 INF: FPGA: Recv ZPIEZORD 32700
17-03-18 06:21:04.954 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.6 V.
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36596 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36590 (-174.5 uncal um), Max = 36601 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 5, negNoise = 6
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: After move to -0.175418, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: Settle wait time = 1480 ms, measure time = 103 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:21:04.954 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:05.004 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:21:05.004 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:05.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:05.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:05.004 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:05.004 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:05.004 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:05.004 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:05.014 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:05.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:05.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:05.014 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:05.024 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:05.024 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:21:05.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:05.064 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:05.364 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:05.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:05.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:05.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:21:05.404 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:05.404 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:05.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:21:05.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:21:05.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:05.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:05.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:21:05.504 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:05.504 -07 000000592 INF: Autofocus start
17-03-18 06:21:05.504 -07 000000592 INF: MeasureProfile start
17-03-18 06:21:05.504 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:05.514 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:21:05.514 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:05.514 -07 000000592 INF: MeasureProfile done
17-03-18 06:21:05.514 -07 000000592 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:21:05.514 -07 000000592 INF: Autofocus finished
17-03-18 06:21:05.714 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:05.714 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:05.714 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175423819551019. ----------
17-03-18 06:21:05.714 -07 000000610 INF: Cycle	148	Tile	10	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:05.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36817, sync = True, waitForSettling = True)
17-03-18 06:21:05.724 -07 000000610 INF: Z Motor: Moving to -0.168537 mm, started at -0.175424 mm, distance = 6.89 um
17-03-18 06:21:05.724 -07 000000610 INF: FPGA: Xmit ZDACW 36817\n [Z Motor]
17-03-18 06:21:05.724 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:21:05.734 -07 000000610 INF: FPGA: 'ZDACW 36817' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:05.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:05.734 -07 000000479 INF: FPGA: Recv ZDACR 36817
17-03-18 06:21:05.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:05.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.894 -07 000000606 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:21:05.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:05.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:21:05.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.914 -07 000000592 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:21:05.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.924 -07 000000479 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:21:05.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.934 -07 000000608 INF: FPGA: Recv ZSGSRD 35523
17-03-18 06:21:05.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.944 -07 000000462 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:21:05.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.954 -07 000000592 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:21:05.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:21:05.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.974 -07 000000447 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:21:05.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:05.984 -07 000000462 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:21:05.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:05.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:05.994 -07 000000592 INF: FPGA: Recv ZPIEZORD 31301
17-03-18 06:21:06.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:06.004 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 06:21:06.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35525 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35523 (-167.7 uncal um), Max = 35527 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:21:06.004 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35525, posNoise = 2, negNoise = 2
17-03-18 06:21:06.004 -07 000000610 INF: Z Motor: After move to -0.168537, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:06.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:21:06.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:06.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:06.004 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:06.004 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:06.004 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:06.004 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:06.004 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:06.004 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:06.004 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:06.004 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:06.004 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:06.004 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:06.014 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:06.014 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:06.014 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:06.014 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:06.014 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:06.024 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:06.024 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:21:06.024 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:06.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36994 150\n [Camera]
17-03-18 06:21:06.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:06.684 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:06.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:06.684 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:06.684 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:06.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:21:06.684 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:06.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:06.684 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:06.684 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:06.684 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:21:06.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:06.864 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.989471,
17-03-18 06:21:06.874 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36994 842
17-03-18 06:21:07.024 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:07.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:21:07.074 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:21:07.074 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:07.084 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:21:07.084 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:21:07.084 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:07.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:07.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:21:07.084 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:07.094 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:21:07.244 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1214
17-03-18 06:21:07.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1214
17-03-18 06:21:07.244 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:07.244 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:07.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:21:07.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1214
17-03-18 06:21:07.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1214
17-03-18 06:21:07.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:07.244 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:07.244 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:21:07.554 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:07.554 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:07.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36994 150' command took 2 ms to send, 1526 ms to get response, and 1532 ms overall
17-03-18 06:21:07.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:07.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168543488347193. ------
17-03-18 06:21:07.564 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:07.564 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17489 mm
17-03-18 06:21:07.564 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:07.564 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38204, sync = True, waitForSettling = False)
17-03-18 06:21:07.564 -07 000000479 INF: Z Motor: Moving to -0.174887 mm, started at -0.168543 mm, distance = -6.34 um
17-03-18 06:21:07.564 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:21:07.564 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:21:07.564 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:07.574 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:07.574 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:07.574 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:21:07.584 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:21:07.584 -07 000000462 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:07.584 -07 000000479 INF: FPGA: Xmit ZDACW 38204\n [Z Motor]
17-03-18 06:21:07.584 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:21:07.584 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:07.584 -07 000000462 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:21:07.594 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:07.594 -07 000000479 INF: FPGA: 'ZDACW 38204' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:21:07.604 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:07.614 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:07.614 -07 000000501 INF: FPGA: Recv ZDACR 38204
17-03-18 06:21:07.624 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:07.624 -07 000000479 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:21:07.644 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:21:07.644 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:21:07.644 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:07.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:21:07.654 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:21:07.654 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:07.654 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:07.654 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:21:07.654 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:21:07.654 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:21:07.794 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:07.794 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:21:07.984 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:21:07.984 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-18 06:21:08.034 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:08.034 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:21:08.044 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:08.044 -07 000000462 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:08.044 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:21:08.044 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.842 mm, average velocity = 2.137 mm/sec
17-03-18 06:21:08.994 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:08.994 -07 000000467 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:21:09.004 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:09.004 -07 000000462 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:09.034 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:09.034 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:09.034 -07 000000462 INF: Y Motor: Moved to 68.2036 after 1466 ms (table move)
17-03-18 06:21:09.034 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174887 mm (DAC = 38204)
17-03-18 06:21:09.034 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.034 -07 000000461 INF: FPGA: Recv ZSGSRD 36507
17-03-18 06:21:09.044 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:09.044 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.044 -07 000000462 INF: FPGA: Recv ZSGSRD 36511
17-03-18 06:21:09.054 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.054 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.054 -07 000000611 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:21:09.064 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.064 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.064 -07 000000461 INF: FPGA: Recv ZSGSRD 36520
17-03-18 06:21:09.074 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.074 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.074 -07 000000501 INF: FPGA: Recv ZSGSRD 36513
17-03-18 06:21:09.084 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.084 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.084 -07 000000382 INF: FPGA: Recv ZSGSRD 36514
17-03-18 06:21:09.094 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.094 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.094 -07 000000462 INF: FPGA: Recv ZSGSRD 36520
17-03-18 06:21:09.104 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.104 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.104 -07 000000467 INF: FPGA: Recv ZSGSRD 36510
17-03-18 06:21:09.114 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.114 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36512
17-03-18 06:21:09.124 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.124 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:09.124 -07 000000447 INF: FPGA: Recv ZSGSRD 36517
17-03-18 06:21:09.134 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.134 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:09.134 -07 000000461 INF: FPGA: Recv ZPIEZORD 32584
17-03-18 06:21:09.144 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.7 V.
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36513 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36507 (-174.0 uncal um), Max = 36520 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36513, posNoise = 7, negNoise = 6
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: After move to -0.174887, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:21:09.144 -07 000000592 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:09.194 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:21:09.194 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:09.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:09.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:09.194 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:09.194 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:09.194 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:09.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:09.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:09.194 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:09.204 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:09.204 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:09.214 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:21:09.214 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:21:09.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:09.264 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:09.564 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:09.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:09.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:09.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:09.604 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:09.604 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:09.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:21:09.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:21:09.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:09.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:09.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:21:09.704 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:09.704 -07 000000629 INF: Autofocus start
17-03-18 06:21:09.704 -07 000000629 INF: MeasureProfile start
17-03-18 06:21:09.704 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:09.714 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:09.714 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:09.714 -07 000000629 INF: MeasureProfile done
17-03-18 06:21:09.714 -07 000000629 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:21:09.714 -07 000000629 INF: Autofocus finished
17-03-18 06:21:09.914 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:09.914 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:09.914 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174890609943253. ----------
17-03-18 06:21:09.914 -07 000000610 INF: Cycle	148	Tile	11	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:09.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36701, sync = True, waitForSettling = True)
17-03-18 06:21:09.924 -07 000000610 INF: Z Motor: Moving to -0.168006 mm, started at -0.174891 mm, distance = 6.88 um
17-03-18 06:21:09.924 -07 000000610 INF: FPGA: Xmit ZDACW 36701\n [Z Motor]
17-03-18 06:21:09.924 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:21:09.934 -07 000000610 INF: FPGA: 'ZDACW 36701' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:09.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:09.934 -07 000000611 INF: FPGA: Recv ZDACR 36701
17-03-18 06:21:09.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:09.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:10.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35441
17-03-18 06:21:10.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:10.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.104 -07 000000611 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:21:10.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.114 -07 000000611 INF: FPGA: Recv ZSGSRD 35439
17-03-18 06:21:10.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.124 -07 000000629 INF: FPGA: Recv ZSGSRD 35441
17-03-18 06:21:10.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.134 -07 000000592 INF: FPGA: Recv ZSGSRD 35450
17-03-18 06:21:10.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.144 -07 000000611 INF: FPGA: Recv ZSGSRD 35443
17-03-18 06:21:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.154 -07 000000611 INF: FPGA: Recv ZSGSRD 35439
17-03-18 06:21:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.164 -07 000000611 INF: FPGA: Recv ZSGSRD 35445
17-03-18 06:21:10.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.174 -07 000000611 INF: FPGA: Recv ZSGSRD 35443
17-03-18 06:21:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:10.184 -07 000000611 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:21:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:10.194 -07 000000611 INF: FPGA: Recv ZPIEZORD 31187
17-03-18 06:21:10.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:10.204 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.4 V.
17-03-18 06:21:10.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35444 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35443 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35439 (-167.1 uncal um), Max = 35450 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:21:10.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35444, posNoise = 6, negNoise = 5
17-03-18 06:21:10.204 -07 000000610 INF: Z Motor: After move to -0.168006, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:10.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:21:10.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:10.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:10.204 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:10.204 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:10.204 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:10.204 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:10.204 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:10.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:10.204 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:10.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:10.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:10.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:10.214 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:10.214 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:10.214 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:10.214 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:10.214 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:10.224 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:21:10.224 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:21:10.224 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:10.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36878 150\n [Camera]
17-03-18 06:21:10.424 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:10.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:10.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:10.884 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:10.884 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:10.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:10.884 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:10.884 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:10.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:10.894 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:10.894 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:21:11.074 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36878 842
17-03-18 06:21:11.224 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:11.254 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:21:11.254 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:21:11.254 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:11.264 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 06:21:11.264 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-18 06:21:11.264 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:11.264 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:21:11.264 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:21:11.264 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:11.274 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:21:11.444 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:11.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:11.444 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:11.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:11.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:11.444 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:11.454 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:11.454 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:21:11.454 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:11.454 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:21:11.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:11.634 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:11.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36878 150' command took 2 ms to send, 1404 ms to get response, and 1412 ms overall
17-03-18 06:21:11.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:11.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.16802312716371. ------
17-03-18 06:21:11.644 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:11.644 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17455 mm
17-03-18 06:21:11.644 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:11.764 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:11.764 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 06:21:11.764 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:11.764 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:21:11.764 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:21:11.764 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38130, sync = True, waitForSettling = False)
17-03-18 06:21:11.764 -07 000000501 INF: Z Motor: Moving to -0.174548 mm, started at -0.168023 mm, distance = -6.52 um
17-03-18 06:21:11.774 -07 000000501 INF: FPGA: Xmit ZDACW 38130\n [Z Motor]
17-03-18 06:21:11.774 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:21:11.784 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:11.784 -07 000000501 INF: FPGA: 'ZDACW 38130' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:21:11.784 -07 000000447 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:21:11.794 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:21:11.794 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:11.794 -07 000000382 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:11.794 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:11.794 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:21:11.794 -07 000000502 INF: FPGA: Recv ZDACR 38130
17-03-18 06:21:11.804 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:11.804 -07 000000501 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:21:11.804 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:11.844 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:21:11.844 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:21:11.844 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:11.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:11.854 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:21:11.854 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:21:11.854 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:11.854 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:11.854 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:21:11.854 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:11.864 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:21:11.964 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:11.964 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 06:21:12.174 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:21:12.174 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:21:12.234 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:12.234 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.989471,
17-03-18 06:21:12.234 -07 000000479 INF: FPGA: Recv YRDPOS 141364
17-03-18 06:21:12.244 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:12.244 -07 000000382 INF: Y Motor: Encoder = 141364 = motor step 110440.6 = 69.0254 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:12.244 -07 000000382 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:21:12.244 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-18 06:21:13.194 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:13.194 -07 000000611 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:21:13.204 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:13.204 -07 000000382 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:13.234 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:13.234 -07 000000382 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:21:13.234 -07 000000382 INF: Y Motor: Moved to 69.0259 after 1466 ms (table move)
17-03-18 06:21:13.234 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174548 mm (DAC = 38130)
17-03-18 06:21:13.234 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.234 -07 000000382 INF: FPGA: Recv ZSGSRD 36458
17-03-18 06:21:13.244 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:13.244 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.244 -07 000000611 INF: FPGA: Recv ZSGSRD 36461
17-03-18 06:21:13.254 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.254 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.254 -07 000000502 INF: FPGA: Recv ZSGSRD 36452
17-03-18 06:21:13.264 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.264 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.264 -07 000000611 INF: FPGA: Recv ZSGSRD 36461
17-03-18 06:21:13.274 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.274 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.274 -07 000000502 INF: FPGA: Recv ZSGSRD 36459
17-03-18 06:21:13.284 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.284 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.284 -07 000000479 INF: FPGA: Recv ZSGSRD 36466
17-03-18 06:21:13.294 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.294 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.294 -07 000000611 INF: FPGA: Recv ZSGSRD 36467
17-03-18 06:21:13.304 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.304 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.304 -07 000000447 INF: FPGA: Recv ZSGSRD 36457
17-03-18 06:21:13.314 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.314 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.314 -07 000000462 INF: FPGA: Recv ZSGSRD 36458
17-03-18 06:21:13.324 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.324 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:13.324 -07 000000479 INF: FPGA: Recv ZSGSRD 36458
17-03-18 06:21:13.334 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.334 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:13.334 -07 000000611 INF: FPGA: Recv ZPIEZORD 32538
17-03-18 06:21:13.344 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.7 V.
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36460 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36458 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36452 (-173.6 uncal um), Max = 36467 (-173.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36460, posNoise = 7, negNoise = 8
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: After move to -0.174548, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:21:13.344 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:13.394 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1749 ms
17-03-18 06:21:13.394 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:13.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:13.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:13.394 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:13.394 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:13.394 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:13.394 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:13.394 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:13.394 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:13.394 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:13.404 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:13.404 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:21:13.404 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:21:13.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:13.454 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:13.754 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:13.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:13.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:13.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:13.794 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:13.794 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:13.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:21:13.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:21:13.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:13.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:13.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:21:13.894 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:13.894 -07 000000382 INF: Autofocus start
17-03-18 06:21:13.894 -07 000000382 INF: MeasureProfile start
17-03-18 06:21:13.894 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:13.904 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:13.904 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:13.904 -07 000000382 INF: MeasureProfile done
17-03-18 06:21:13.904 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:21:13.904 -07 000000382 INF: Autofocus finished
17-03-18 06:21:14.104 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:14.104 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:14.104 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174550126699739. ----------
17-03-18 06:21:14.104 -07 000000610 INF: Cycle	148	Tile	12	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:14.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36663, sync = True, waitForSettling = True)
17-03-18 06:21:14.114 -07 000000610 INF: Z Motor: Moving to -0.167832 mm, started at -0.174550 mm, distance = 6.72 um
17-03-18 06:21:14.114 -07 000000610 INF: FPGA: Xmit ZDACW 36663\n [Z Motor]
17-03-18 06:21:14.114 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:14.124 -07 000000610 INF: FPGA: 'ZDACW 36663' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:14.124 -07 000000479 INF: FPGA: Recv ZDACR 36663
17-03-18 06:21:14.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35419
17-03-18 06:21:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35420
17-03-18 06:21:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.304 -07 000000501 INF: FPGA: Recv ZSGSRD 35416
17-03-18 06:21:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.314 -07 000000447 INF: FPGA: Recv ZSGSRD 35418
17-03-18 06:21:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.324 -07 000000382 INF: FPGA: Recv ZSGSRD 35412
17-03-18 06:21:14.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.334 -07 000000461 INF: FPGA: Recv ZSGSRD 35416
17-03-18 06:21:14.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.344 -07 000000592 INF: FPGA: Recv ZSGSRD 35416
17-03-18 06:21:14.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.354 -07 000000501 INF: FPGA: Recv ZSGSRD 35415
17-03-18 06:21:14.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.364 -07 000000461 INF: FPGA: Recv ZSGSRD 35407
17-03-18 06:21:14.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:14.374 -07 000000592 INF: FPGA: Recv ZSGSRD 35418
17-03-18 06:21:14.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:14.384 -07 000000501 INF: FPGA: Recv ZPIEZORD 31172
17-03-18 06:21:14.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:14.394 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.4 V.
17-03-18 06:21:14.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35416 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35416 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35407 (-166.9 uncal um), Max = 35420 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:21:14.394 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35416, posNoise = 4, negNoise = 9
17-03-18 06:21:14.394 -07 000000610 INF: Z Motor: After move to -0.167832, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:14.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:21:14.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:14.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:14.394 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:14.394 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:14.394 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:14.394 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:14.394 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:14.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:14.394 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:21:14.394 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:14.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:21:14.394 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:14.404 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:14.404 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:14.404 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:14.404 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:14.414 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:14.414 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:14.414 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:21:14.414 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:14.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36839 150\n [Camera]
17-03-18 06:21:14.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:15.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:15.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:15.074 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:15.074 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:15.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:15.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:15.074 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:15.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:21:15.074 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:15.074 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:15.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36839 842
17-03-18 06:21:15.414 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:15.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:21:15.454 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:21:15.454 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:15.464 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:15.464 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:21:15.464 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:21:15.464 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:15.464 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:21:15.464 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:15.464 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:21:15.634 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:15.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:15.634 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:15.634 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:15.634 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:21:15.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:15.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:15.634 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:15.634 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:15.634 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:21:15.824 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:21:15.824 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:15.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36839 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-18 06:21:15.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:15.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167843249223741. ------
17-03-18 06:21:15.834 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:15.834 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-18 06:21:15.834 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:15.834 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:15.834 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:21:15.834 -07 000000592 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:21:15.834 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38053, sync = True, waitForSettling = False)
17-03-18 06:21:15.834 -07 000000569 INF: Z Motor: Moving to -0.174195 mm, started at -0.167843 mm, distance = -6.35 um
17-03-18 06:21:15.844 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:15.844 -07 000000569 INF: FPGA: Xmit ZDACW 38053\n [Z Motor]
17-03-18 06:21:15.844 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:15.854 -07 000000569 INF: FPGA: 'ZDACW 38053' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:21:15.854 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:15.854 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:21:15.864 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:15.864 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:21:15.864 -07 000000592 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:15.864 -07 000000592 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:15.864 -07 000000592 INF: Y Motor: Moving 1355 steps-35
17-03-18 06:21:15.874 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:15.874 -07 000000479 INF: FPGA: Recv ZDACR 38053
17-03-18 06:21:15.884 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:15.884 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:15.884 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:21:16.034 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:21:16.044 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:16.044 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:16.044 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:21:16.044 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:21:16.044 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:16.044 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:16.044 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:21:16.044 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:21:16.054 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:21:16.064 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:16.064 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:21:16.254 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:21:16.254 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:21:16.314 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:16.314 -07 000000569 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:21:16.324 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:16.324 -07 000000592 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:16.324 -07 000000592 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:21:16.324 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 06:21:16.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:17.274 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:17.274 -07 000000502 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:21:17.284 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:17.284 -07 000000592 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:17.314 -07 000000592 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:17.314 -07 000000592 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:17.314 -07 000000592 INF: Y Motor: Moved to 69.8618 after 1482 ms (table move)
17-03-18 06:21:17.324 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174195 mm (DAC = 38053)
17-03-18 06:21:17.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.324 -07 000000592 INF: FPGA: Recv ZSGSRD 36413
17-03-18 06:21:17.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.334 -07 000000592 INF: FPGA: Recv ZSGSRD 36404
17-03-18 06:21:17.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.344 -07 000000501 INF: FPGA: Recv ZSGSRD 36406
17-03-18 06:21:17.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.354 -07 000000501 INF: FPGA: Recv ZSGSRD 36402
17-03-18 06:21:17.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.364 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.364 -07 000000501 INF: FPGA: Recv ZSGSRD 36403
17-03-18 06:21:17.374 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.374 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36411
17-03-18 06:21:17.384 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36404
17-03-18 06:21:17.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.394 -07 000000474 INF: FPGA: Recv ZSGSRD 36406
17-03-18 06:21:17.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36408
17-03-18 06:21:17.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:17.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36405
17-03-18 06:21:17.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.424 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:17.424 -07 000000474 INF: FPGA: Recv ZPIEZORD 32434
17-03-18 06:21:17.434 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.8 V.
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36406 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36402 (-173.3 uncal um), Max = 36413 (-173.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36406, posNoise = 7, negNoise = 4
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: After move to -0.174195, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: Settle wait time = 1485 ms, measure time = 111 ms (allowed 150 ms), total time = 1596 ms
17-03-18 06:21:17.434 -07 000000462 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:17.474 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:21:17.474 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:17.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:17.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:17.474 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:17.474 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:17.474 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:17.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:17.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:17.474 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:17.484 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:17.484 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:17.494 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:21:17.494 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:21:17.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:17.544 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:17.624 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.038479,
17-03-18 06:21:17.844 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:17.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:17.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:17.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:21:17.884 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:17.884 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:17.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:21:17.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:21:17.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:17.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:17.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:21:17.984 -07 000000502 INF: Autofocus start
17-03-18 06:21:17.984 -07 000000502 INF: MeasureProfile start
17-03-18 06:21:17.984 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:17.984 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:17.994 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:17.994 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:17.994 -07 000000502 INF: MeasureProfile done
17-03-18 06:21:17.994 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:21:17.994 -07 000000502 INF: Autofocus finished
17-03-18 06:21:18.194 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:18.194 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:21:18.194 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174203219244084. ----------
17-03-18 06:21:18.194 -07 000000610 INF: Cycle	148	Tile	13	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:18.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36586, sync = True, waitForSettling = True)
17-03-18 06:21:18.204 -07 000000610 INF: Z Motor: Moving to -0.167480 mm, started at -0.174203 mm, distance = 6.72 um
17-03-18 06:21:18.204 -07 000000610 INF: FPGA: Xmit ZDACW 36586\n [Z Motor]
17-03-18 06:21:18.204 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:18.214 -07 000000610 INF: FPGA: 'ZDACW 36586' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:18.214 -07 000000462 INF: FPGA: Recv ZDACR 36586
17-03-18 06:21:18.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:18.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.374 -07 000000447 INF: FPGA: Recv ZSGSRD 35363
17-03-18 06:21:18.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:18.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.384 -07 000000462 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:21:18.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35363
17-03-18 06:21:18.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.404 -07 000000462 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:21:18.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35365
17-03-18 06:21:18.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.424 -07 000000501 INF: FPGA: Recv ZSGSRD 35368
17-03-18 06:21:18.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35353
17-03-18 06:21:18.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35361
17-03-18 06:21:18.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35358
17-03-18 06:21:18.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:18.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35360
17-03-18 06:21:18.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:18.474 -07 000000462 INF: FPGA: Recv ZPIEZORD 31084
17-03-18 06:21:18.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:18.484 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.4 V.
17-03-18 06:21:18.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35362 (-166.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35352 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:21:18.484 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 8, negNoise = 8
17-03-18 06:21:18.484 -07 000000610 INF: Z Motor: After move to -0.167480, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:18.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:21:18.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:18.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:18.484 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:18.484 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:18.484 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:18.484 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:18.484 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:18.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:18.484 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:18.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:18.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:18.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:18.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:18.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:18.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:18.484 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:18.504 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:21:18.504 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:21:18.504 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:21:18.504 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:21:18.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36763 150\n [Camera]
17-03-18 06:21:18.714 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:19.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:19.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:19.164 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:19.164 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:19.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:21:19.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:19.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:19.164 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:19.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:19.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:21:19.354 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36763 842
17-03-18 06:21:19.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:19.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:21:19.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:21:19.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:19.544 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:21:19.544 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:21:19.544 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:19.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:19.554 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:21:19.554 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:19.564 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:21:19.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:19.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:19.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:19.724 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:19.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:21:19.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:19.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:19.734 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:19.734 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:19.734 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:21:19.914 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:21:19.914 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:19.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36763 150' command took 2 ms to send, 1399 ms to get response, and 1411 ms overall
17-03-18 06:21:19.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:19.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167483493343802. ------
17-03-18 06:21:20.044 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17388 mm
17-03-18 06:21:20.044 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:20.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:20.044 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:21:20.044 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:21:20.044 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37984, sync = True, waitForSettling = False)
17-03-18 06:21:20.044 -07 000000479 INF: Z Motor: Moving to -0.173880 mm, started at -0.167483 mm, distance = -6.40 um
17-03-18 06:21:20.044 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:20.054 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:20.054 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:20.054 -07 000000462 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:21:20.064 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:21:20.064 -07 000000501 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:20.064 -07 000000479 INF: FPGA: Xmit ZDACW 37984\n [Z Motor]
17-03-18 06:21:20.064 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:21:20.064 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:20.064 -07 000000501 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:21:20.074 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:20.074 -07 000000479 INF: FPGA: 'ZDACW 37984' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:21:20.084 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:20.094 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:20.094 -07 000000382 INF: FPGA: Recv ZDACR 37984
17-03-18 06:21:20.104 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:20.104 -07 000000479 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:21:20.114 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:21:20.114 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:21:20.114 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:20.124 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:21:20.124 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:21:20.124 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:20.124 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:20.124 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:21:20.124 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:21:20.124 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:21:20.274 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:20.274 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:21:20.454 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:21:20.454 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:21:20.504 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:20.514 -07 000000480 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:21:20.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:20.524 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:20.524 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:21:20.524 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.841 mm, average velocity = 2.145 mm/sec
17-03-18 06:21:21.474 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:21.474 -07 000000591 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:21:21.484 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:21.484 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:21.534 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:21.534 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:21.534 -07 000000501 INF: Y Motor: Moved to 70.6875 after 1487 ms (table move)
17-03-18 06:21:21.534 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173880 mm (DAC = 37984)
17-03-18 06:21:21.534 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.544 -07 000000462 INF: FPGA: Recv ZSGSRD 36358
17-03-18 06:21:21.544 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:21.544 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.544 -07 000000501 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:21:21.554 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.554 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.554 -07 000000591 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:21:21.564 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.564 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.564 -07 000000501 INF: FPGA: Recv ZSGSRD 36354
17-03-18 06:21:21.574 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.574 -07 000000462 INF: FPGA: Recv ZSGSRD 36357
17-03-18 06:21:21.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.584 -07 000000502 INF: FPGA: Recv ZSGSRD 36361
17-03-18 06:21:21.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.594 -07 000000591 INF: FPGA: Recv ZSGSRD 36353
17-03-18 06:21:21.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.604 -07 000000462 INF: FPGA: Recv ZSGSRD 36356
17-03-18 06:21:21.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.614 -07 000000591 INF: FPGA: Recv ZSGSRD 36355
17-03-18 06:21:21.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:21.624 -07 000000462 INF: FPGA: Recv ZSGSRD 36353
17-03-18 06:21:21.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.634 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:21.634 -07 000000591 INF: FPGA: Recv ZPIEZORD 32409
17-03-18 06:21:21.644 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.7 V.
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36355 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36354 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36351 (-173.0 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36355, posNoise = 6, negNoise = 4
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: After move to -0.173880, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: Settle wait time = 1490 ms, measure time = 103 ms (allowed 150 ms), total time = 1593 ms
17-03-18 06:21:21.644 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:21.694 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 06:21:21.694 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:21.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:21.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:21.694 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:21.694 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:21.694 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:21.694 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:21.694 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:21.694 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:21.704 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:21.704 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:21.704 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:21.704 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:21:21.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:21.754 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:21.854 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:22.054 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:22.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:22.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:22.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:22.094 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:22.094 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:22.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:21:22.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:21:22.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:22.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:22.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:21:22.194 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:22.194 -07 000000608 INF: Autofocus start
17-03-18 06:21:22.194 -07 000000608 INF: MeasureProfile start
17-03-18 06:21:22.194 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:22.204 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:22.204 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:22.204 -07 000000608 INF: MeasureProfile done
17-03-18 06:21:22.204 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:21:22.204 -07 000000608 INF: Autofocus finished
17-03-18 06:21:22.404 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:22.424 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 213 ms to get response, and 222 ms overall
17-03-18 06:21:22.424 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173875584424855. ----------
17-03-18 06:21:22.434 -07 000000610 INF: Cycle	148	Tile	14	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:22.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36481, sync = True, waitForSettling = True)
17-03-18 06:21:22.434 -07 000000610 INF: Z Motor: Moving to -0.166999 mm, started at -0.173876 mm, distance = 6.88 um
17-03-18 06:21:22.434 -07 000000610 INF: FPGA: Xmit ZDACW 36481\n [Z Motor]
17-03-18 06:21:22.434 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:22.444 -07 000000610 INF: FPGA: 'ZDACW 36481' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:22.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:22.444 -07 000000461 INF: FPGA: Recv ZDACR 36481
17-03-18 06:21:22.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:22.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.604 -07 000000501 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:21:22.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:22.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.614 -07 000000591 INF: FPGA: Recv ZSGSRD 35282
17-03-18 06:21:22.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.624 -07 000000382 INF: FPGA: Recv ZSGSRD 35286
17-03-18 06:21:22.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.634 -07 000000585 INF: FPGA: Recv ZSGSRD 35288
17-03-18 06:21:22.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.644 -07 000000502 INF: FPGA: Recv ZSGSRD 35283
17-03-18 06:21:22.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.654 -07 000000382 INF: FPGA: Recv ZSGSRD 35285
17-03-18 06:21:22.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.674 -07 000000462 INF: FPGA: Recv ZSGSRD 35290
17-03-18 06:21:22.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:22.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.684 -07 000000461 INF: FPGA: Recv ZSGSRD 35282
17-03-18 06:21:22.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.694 -07 000000462 INF: FPGA: Recv ZSGSRD 35285
17-03-18 06:21:22.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:22.704 -07 000000569 INF: FPGA: Recv ZSGSRD 35289
17-03-18 06:21:22.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:22.714 -07 000000462 INF: FPGA: Recv ZPIEZORD 30989
17-03-18 06:21:22.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:22.724 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 06:21:22.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35285 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35285 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35280 (-166.1 uncal um), Max = 35290 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:21:22.724 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35285, posNoise = 5, negNoise = 5
17-03-18 06:21:22.724 -07 000000610 INF: Z Motor: After move to -0.166999, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:22.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:21:22.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:22.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:22.724 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:22.724 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:22.724 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:22.724 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:22.724 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:22.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:22.724 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:22.724 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:22.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:22.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:22.734 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:22.734 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:22.734 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:22.734 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:22.744 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:21:22.744 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:22.744 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:21:22.744 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:22.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36658 150\n [Camera]
17-03-18 06:21:22.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:22.984 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.027603,
17-03-18 06:21:23.404 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:23.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:23.404 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:23.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:23.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:23.404 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:23.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:23.404 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:23.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:23.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:21:23.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36658 842
17-03-18 06:21:23.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:23.804 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:21:23.804 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:21:23.804 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:23.804 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:21:23.804 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:21:23.804 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:23.804 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:23.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:23.804 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:23.814 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:21:23.964 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:23.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:23.964 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:23.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:23.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:23.964 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:23.974 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:23.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:21:23.974 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:23.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:21:24.154 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:24.154 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:24.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36658 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-18 06:21:24.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:24.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.16700167743317. ------
17-03-18 06:21:24.164 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:24.164 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17376 mm
17-03-18 06:21:24.164 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:24.284 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:24.284 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 06:21:24.284 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:24.284 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:21:24.284 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37959, sync = True, waitForSettling = False)
17-03-18 06:21:24.284 -07 000000447 INF: Z Motor: Moving to -0.173765 mm, started at -0.167002 mm, distance = -6.76 um
17-03-18 06:21:24.284 -07 000000585 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:21:24.294 -07 000000447 INF: FPGA: Xmit ZDACW 37959\n [Z Motor]
17-03-18 06:21:24.294 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:24.304 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:24.304 -07 000000447 INF: FPGA: 'ZDACW 37959' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:21:24.304 -07 000000479 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:21:24.314 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:21:24.314 -07 000000585 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:24.314 -07 000000585 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:24.314 -07 000000585 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:21:24.314 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:24.314 -07 000000592 INF: FPGA: Recv ZDACR 37959
17-03-18 06:21:24.324 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:24.324 -07 000000447 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:21:24.324 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:24.364 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:21:24.364 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:21:24.364 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:24.374 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:21:24.374 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:21:24.374 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:24.374 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:24.374 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:21:24.374 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:24.384 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:21:24.484 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:24.484 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:24.694 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:21:24.694 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:21:24.744 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:24.754 -07 000000502 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:21:24.754 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:21:24.754 -07 000000585 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:24.754 -07 000000585 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:21:24.754 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec
17-03-18 06:21:25.704 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:25.704 -07 000000462 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:21:25.714 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:25.714 -07 000000585 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:25.744 -07 000000585 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:25.744 -07 000000585 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:25.744 -07 000000585 INF: Y Motor: Moved to 71.5176 after 1460 ms (table move)
17-03-18 06:21:25.744 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173765 mm (DAC = 37959)
17-03-18 06:21:25.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.754 -07 000000502 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:21:25.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:25.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.754 -07 000000479 INF: FPGA: Recv ZSGSRD 36340
17-03-18 06:21:25.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.764 -07 000000592 INF: FPGA: Recv ZSGSRD 36344
17-03-18 06:21:25.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.774 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.774 -07 000000591 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:21:25.784 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.784 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.784 -07 000000592 INF: FPGA: Recv ZSGSRD 36340
17-03-18 06:21:25.794 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.794 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.794 -07 000000591 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:21:25.804 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.804 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.804 -07 000000447 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:21:25.814 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.814 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.814 -07 000000591 INF: FPGA: Recv ZSGSRD 36340
17-03-18 06:21:25.824 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.824 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.824 -07 000000447 INF: FPGA: Recv ZSGSRD 36336
17-03-18 06:21:25.834 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.834 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:25.834 -07 000000591 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:21:25.844 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.844 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:25.844 -07 000000447 INF: FPGA: Recv ZPIEZORD 32415
17-03-18 06:21:25.854 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.7 V.
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36339 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36339 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36335 (-172.9 uncal um), Max = 36344 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36339, posNoise = 5, negNoise = 4
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: After move to -0.173765, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: Settle wait time = 1463 ms, measure time = 104 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:21:25.854 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:25.904 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 06:21:25.904 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:25.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:25.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:25.904 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:25.904 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:25.904 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:25.904 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:25.904 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:25.904 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:25.914 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:25.914 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:25.914 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:25.914 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:21:25.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:25.964 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:26.264 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:26.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:26.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:26.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:26.304 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:26.304 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:26.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:21:26.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:21:26.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:26.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:26.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:21:26.404 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:26.404 -07 000000591 INF: Autofocus start
17-03-18 06:21:26.404 -07 000000591 INF: MeasureProfile start
17-03-18 06:21:26.404 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:26.414 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:26.414 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:26.414 -07 000000591 INF: MeasureProfile done
17-03-18 06:21:26.414 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:21:26.414 -07 000000591 INF: Autofocus finished
17-03-18 06:21:26.614 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:26.614 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:26.614 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173772797030586. ----------
17-03-18 06:21:26.614 -07 000000610 INF: Cycle	148	Tile	15	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:26.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36474, sync = True, waitForSettling = True)
17-03-18 06:21:26.624 -07 000000610 INF: Z Motor: Moving to -0.166967 mm, started at -0.173773 mm, distance = 6.81 um
17-03-18 06:21:26.624 -07 000000610 INF: FPGA: Xmit ZDACW 36474\n [Z Motor]
17-03-18 06:21:26.624 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:21:26.634 -07 000000610 INF: FPGA: 'ZDACW 36474' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:26.634 -07 000000591 INF: FPGA: Recv ZDACR 36474
17-03-18 06:21:26.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:26.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.794 -07 000000447 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:21:26.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.804 -07 000000591 INF: FPGA: Recv ZSGSRD 35278
17-03-18 06:21:26.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.814 -07 000000585 INF: FPGA: Recv ZSGSRD 35283
17-03-18 06:21:26.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.824 -07 000000447 INF: FPGA: Recv ZSGSRD 35286
17-03-18 06:21:26.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.834 -07 000000462 INF: FPGA: Recv ZSGSRD 35278
17-03-18 06:21:26.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:21:26.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.854 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:26.854 -07 000000479 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:21:26.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.864 -07 000000502 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:21:26.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.874 -07 000000591 INF: FPGA: Recv ZSGSRD 35286
17-03-18 06:21:26.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:26.884 -07 000000382 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:21:26.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:26.894 -07 000000461 INF: FPGA: Recv ZPIEZORD 31001
17-03-18 06:21:26.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:26.904 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.4 V.
17-03-18 06:21:26.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35281 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35277 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:26.904 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35281, posNoise = 5, negNoise = 4
17-03-18 06:21:26.904 -07 000000610 INF: Z Motor: After move to -0.166967, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:26.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:21:26.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:26.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:26.904 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:26.904 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:26.904 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:26.904 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:26.904 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:26.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:26.904 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:26.904 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:26.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:26.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:26.904 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:26.904 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:26.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:26.914 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:26.914 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:26.914 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:26.914 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:21:26.914 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:26.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36650 150\n [Camera]
17-03-18 06:21:27.124 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:27.584 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:27.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:27.584 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:27.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:27.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:27.584 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:27.584 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:27.584 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:27.594 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:27.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:21:27.774 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36650 842
17-03-18 06:21:27.924 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:27.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:21:27.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:21:27.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:27.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:21:27.984 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:21:27.984 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:27.984 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:27.984 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:21:27.984 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:27.994 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:21:28.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:28.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:28.144 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:28.144 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:28.144 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:21:28.144 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:28.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:28.144 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:28.144 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:28.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:21:28.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:21:28.334 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:28.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36650 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-18 06:21:28.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:28.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166975980584603. ------
17-03-18 06:21:28.344 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17342 mm
17-03-18 06:21:28.344 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:28.344 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:21:28.344 -07 000000461 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:21:28.344 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37884, sync = True, waitForSettling = False)
17-03-18 06:21:28.344 -07 000000592 INF: Z Motor: Moving to -0.173422 mm, started at -0.166976 mm, distance = -6.45 um
17-03-18 06:21:28.354 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.993549,
17-03-18 06:21:28.364 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:28.364 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:28.374 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:21:28.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:28.374 -07 000000629 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:21:28.384 -07 000000592 INF: FPGA: Xmit ZDACW 37884\n [Z Motor]
17-03-18 06:21:28.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 06:21:28.384 -07 000000461 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:28.384 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:21:28.384 -07 000000461 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:28.384 -07 000000461 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:21:28.394 -07 000000592 INF: FPGA: 'ZDACW 37884' command took 0 ms to send, 0 ms to get response, and 43 ms overall
17-03-18 06:21:28.404 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:28.414 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:28.424 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:28.424 -07 000000447 INF: FPGA: Recv ZDACR 37884
17-03-18 06:21:28.434 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:21:28.434 -07 000000592 INF: Z Motor: MoveAbsStepped took 84 ms (did NOT wait for settling yet))
17-03-18 06:21:28.534 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:21:28.534 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:21:28.534 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:28.534 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:21:28.534 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:21:28.534 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:28.534 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:28.544 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:21:28.544 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:21:28.544 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:21:28.604 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:28.604 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 194 ms to get response, and 234 ms overall
17-03-18 06:21:28.784 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:21:28.784 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-18 06:21:28.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:28.844 -07 000000585 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:21:28.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:21:28.844 -07 000000461 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:28.844 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:21:28.844 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.845 mm, average velocity = 2.097 mm/sec
17-03-18 06:21:29.794 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:29.794 -07 000000629 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:21:29.804 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:29.804 -07 000000461 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:29.834 -07 000000461 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:29.834 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:29.834 -07 000000461 INF: Y Motor: Moved to 72.3486 after 1487 ms (table move)
17-03-18 06:21:29.834 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173422 mm (DAC = 37884)
17-03-18 06:21:29.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.844 -07 000000629 INF: FPGA: Recv ZSGSRD 36287
17-03-18 06:21:29.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:29.844 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.844 -07 000000461 INF: FPGA: Recv ZSGSRD 36290
17-03-18 06:21:29.854 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.854 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.854 -07 000000585 INF: FPGA: Recv ZSGSRD 36283
17-03-18 06:21:29.864 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.864 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.864 -07 000000502 INF: FPGA: Recv ZSGSRD 36287
17-03-18 06:21:29.874 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.874 -07 000000467 INF: FPGA: Recv ZSGSRD 36284
17-03-18 06:21:29.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.884 -07 000000447 INF: FPGA: Recv ZSGSRD 36283
17-03-18 06:21:29.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.894 -07 000000479 INF: FPGA: Recv ZSGSRD 36291
17-03-18 06:21:29.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.904 -07 000000447 INF: FPGA: Recv ZSGSRD 36290
17-03-18 06:21:29.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.914 -07 000000629 INF: FPGA: Recv ZSGSRD 36284
17-03-18 06:21:29.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:29.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36288
17-03-18 06:21:29.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.934 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:29.934 -07 000000479 INF: FPGA: Recv ZPIEZORD 32356
17-03-18 06:21:29.944 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.7 V.
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36287 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36287 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36283 (-172.5 uncal um), Max = 36291 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36287, posNoise = 4, negNoise = 4
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: After move to -0.173422, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: Settle wait time = 1491 ms, measure time = 103 ms (allowed 150 ms), total time = 1594 ms
17-03-18 06:21:29.944 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:29.994 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 06:21:29.994 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:29.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:29.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:29.994 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:29.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:29.994 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:29.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:29.994 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:29.994 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:30.004 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:30.004 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:30.014 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:21:30.014 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:21:30.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:30.054 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:30.354 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:30.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:30.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:30.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:21:30.394 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:30.394 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:30.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 06:21:30.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:21:30.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:30.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:30.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:21:30.494 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:30.494 -07 000000447 INF: Autofocus start
17-03-18 06:21:30.494 -07 000000447 INF: MeasureProfile start
17-03-18 06:21:30.494 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:30.504 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:30.504 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:30.504 -07 000000447 INF: MeasureProfile done
17-03-18 06:21:30.504 -07 000000447 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:21:30.504 -07 000000447 INF: Autofocus finished
17-03-18 06:21:30.704 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:30.704 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:30.704 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173438737999215. ----------
17-03-18 06:21:30.714 -07 000000610 INF: Cycle	148	Tile	16	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:30.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36345, sync = True, waitForSettling = True)
17-03-18 06:21:30.714 -07 000000610 INF: Z Motor: Moving to -0.166377 mm, started at -0.173439 mm, distance = 7.06 um
17-03-18 06:21:30.714 -07 000000610 INF: FPGA: Xmit ZDACW 36345\n [Z Motor]
17-03-18 06:21:30.714 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:21:30.724 -07 000000610 INF: FPGA: 'ZDACW 36345' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:30.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:30.724 -07 000000447 INF: FPGA: Recv ZDACR 36345
17-03-18 06:21:30.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:30.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.884 -07 000000467 INF: FPGA: Recv ZSGSRD 35186
17-03-18 06:21:30.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:30.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.894 -07 000000585 INF: FPGA: Recv ZSGSRD 35192
17-03-18 06:21:30.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.904 -07 000000502 INF: FPGA: Recv ZSGSRD 35191
17-03-18 06:21:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.914 -07 000000438 INF: FPGA: Recv ZSGSRD 35188
17-03-18 06:21:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.924 -07 000000585 INF: FPGA: Recv ZSGSRD 35194
17-03-18 06:21:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.934 -07 000000467 INF: FPGA: Recv ZSGSRD 35193
17-03-18 06:21:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.944 -07 000000629 INF: FPGA: Recv ZSGSRD 35192
17-03-18 06:21:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.954 -07 000000467 INF: FPGA: Recv ZSGSRD 35187
17-03-18 06:21:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.964 -07 000000462 INF: FPGA: Recv ZSGSRD 35190
17-03-18 06:21:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:30.974 -07 000000502 INF: FPGA: Recv ZSGSRD 35189
17-03-18 06:21:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:30.984 -07 000000461 INF: FPGA: Recv ZPIEZORD 30906
17-03-18 06:21:30.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:30.994 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.4 V.
17-03-18 06:21:30.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35190 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35190 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35186 (-165.5 uncal um), Max = 35194 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:30.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35190, posNoise = 4, negNoise = 4
17-03-18 06:21:30.994 -07 000000610 INF: Z Motor: After move to -0.166377, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:30.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:21:30.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:30.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:30.994 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:30.994 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:30.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:30.994 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:30.994 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:30.994 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:30.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:30.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:30.994 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:30.994 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:31.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:31.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:31.004 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:31.004 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:31.014 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:21:31.014 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:31.014 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:21:31.014 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:31.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36522 150\n [Camera]
17-03-18 06:21:31.214 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:21:31.674 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:31.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:31.674 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:31.674 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:31.674 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:21:31.674 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:31.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:31.674 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:31.674 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:31.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:21:31.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:31.864 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36522 842
17-03-18 06:21:32.014 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:21:32.044 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:21:32.044 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:21:32.044 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:32.054 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:21:32.054 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:21:32.054 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:32.054 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:32.054 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:21:32.054 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:32.064 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:21:32.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:32.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:32.234 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:32.234 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:32.234 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:21:32.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:32.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:32.234 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:32.234 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:32.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:21:32.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:21:32.424 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:32.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36522 150' command took 2 ms to send, 1405 ms to get response, and 1411 ms overall
17-03-18 06:21:32.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:32.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166391377279703. ------
17-03-18 06:21:32.434 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:32.434 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17279 mm
17-03-18 06:21:32.434 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:32.544 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:32.544 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 06:21:32.554 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:32.554 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37746, sync = True, waitForSettling = False)
17-03-18 06:21:32.554 -07 000000569 INF: Z Motor: Moving to -0.172790 mm, started at -0.166391 mm, distance = -6.40 um
17-03-18 06:21:32.554 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:21:32.554 -07 000000611 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:21:32.564 -07 000000569 INF: FPGA: Xmit ZDACW 37746\n [Z Motor]
17-03-18 06:21:32.564 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:21:32.574 -07 000000569 INF: FPGA: 'ZDACW 37746' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:21:32.574 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:32.574 -07 000000474 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:21:32.584 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:21:32.584 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:32.584 -07 000000611 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:32.584 -07 000000611 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:32.584 -07 000000611 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:21:32.584 -07 000000474 INF: FPGA: Recv ZDACR 37746
17-03-18 06:21:32.594 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:32.594 -07 000000569 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:21:32.594 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:32.624 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:21:32.624 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:21:32.624 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:32.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:21:32.624 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:21:32.624 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:32.634 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:32.634 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:21:32.634 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:21:32.644 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:21:32.754 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:32.754 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:21:32.964 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:21:32.964 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:21:33.014 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:33.024 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:21:33.024 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:21:33.024 -07 000000611 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:33.024 -07 000000611 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:21:33.024 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 06:21:33.784 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.988112,
17-03-18 06:21:33.974 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:33.974 -07 000000447 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:21:33.984 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:33.984 -07 000000611 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:34.014 -07 000000611 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:34.014 -07 000000611 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:34.014 -07 000000611 INF: Y Motor: Moved to 73.1748 after 1459 ms (table move)
17-03-18 06:21:34.014 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172790 mm (DAC = 37746)
17-03-18 06:21:34.014 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.014 -07 000000461 INF: FPGA: Recv ZSGSRD 36191
17-03-18 06:21:34.024 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:34.024 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.024 -07 000000569 INF: FPGA: Recv ZSGSRD 36188
17-03-18 06:21:34.034 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.034 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.034 -07 000000474 INF: FPGA: Recv ZSGSRD 36189
17-03-18 06:21:34.044 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.044 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.044 -07 000000501 INF: FPGA: Recv ZSGSRD 36186
17-03-18 06:21:34.054 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.054 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.054 -07 000000461 INF: FPGA: Recv ZSGSRD 36190
17-03-18 06:21:34.064 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.064 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.064 -07 000000501 INF: FPGA: Recv ZSGSRD 36193
17-03-18 06:21:34.074 -07 000000585 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.074 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.074 -07 000000502 INF: FPGA: Recv ZSGSRD 36181
17-03-18 06:21:34.084 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.094 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.094 -07 000000438 INF: FPGA: Recv ZSGSRD 36189
17-03-18 06:21:34.104 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:34.114 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.114 -07 000000474 INF: FPGA: Recv ZSGSRD 36189
17-03-18 06:21:34.124 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:34.124 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:34.124 -07 000000467 INF: FPGA: Recv ZSGSRD 36188
17-03-18 06:21:34.134 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.154 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:34.154 -07 000000611 INF: FPGA: Recv ZPIEZORD 32249
17-03-18 06:21:34.164 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.7 V.
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36189 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36181 (-171.9 uncal um), Max = 36193 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 5, negNoise = 7
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: After move to -0.172790, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: Settle wait time = 1462 ms, measure time = 145 ms (allowed 150 ms), total time = 1607 ms
17-03-18 06:21:34.164 -07 000000585 INF: Z Motor: Waiting extra 5 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:34.174 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 06:21:34.174 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:34.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:34.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:34.174 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:34.174 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:34.174 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:34.174 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:34.174 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:34.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:34.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:34.184 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:34.194 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:21:34.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:21:34.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:34.234 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:34.534 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:34.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:34.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:34.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:34.574 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:34.574 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:34.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:21:34.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:21:34.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:34.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:34.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:21:34.674 -07 000000585 INF: Autofocus start
17-03-18 06:21:34.674 -07 000000585 INF: MeasureProfile start
17-03-18 06:21:34.674 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:34.674 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:34.684 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:34.684 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:34.684 -07 000000585 INF: MeasureProfile done
17-03-18 06:21:34.684 -07 000000585 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:21:34.684 -07 000000585 INF: Autofocus finished
17-03-18 06:21:34.884 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:34.884 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:34.884 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.17280274099718. ----------
17-03-18 06:21:34.884 -07 000000610 INF: Cycle	148	Tile	17	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:34.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36296, sync = True, waitForSettling = True)
17-03-18 06:21:34.894 -07 000000610 INF: Z Motor: Moving to -0.166152 mm, started at -0.172803 mm, distance = 6.65 um
17-03-18 06:21:34.894 -07 000000610 INF: FPGA: Xmit ZDACW 36296\n [Z Motor]
17-03-18 06:21:34.894 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:21:34.904 -07 000000610 INF: FPGA: 'ZDACW 36296' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:34.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:34.904 -07 000000502 INF: FPGA: Recv ZDACR 36296
17-03-18 06:21:34.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:34.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:35.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.064 -07 000000462 INF: FPGA: Recv ZSGSRD 35158
17-03-18 06:21:35.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:35.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.074 -07 000000579 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:21:35.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35152
17-03-18 06:21:35.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.094 -07 000000502 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:21:35.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.104 -07 000000501 INF: FPGA: Recv ZSGSRD 35162
17-03-18 06:21:35.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.114 -07 000000608 INF: FPGA: Recv ZSGSRD 35161
17-03-18 06:21:35.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35153
17-03-18 06:21:35.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.134 -07 000000502 INF: FPGA: Recv ZSGSRD 35155
17-03-18 06:21:35.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.144 -07 000000447 INF: FPGA: Recv ZSGSRD 35153
17-03-18 06:21:35.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:35.154 -07 000000608 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:21:35.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:35.164 -07 000000474 INF: FPGA: Recv ZPIEZORD 30885
17-03-18 06:21:35.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:35.174 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.4 V.
17-03-18 06:21:35.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35156 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35156 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35152 (-165.3 uncal um), Max = 35162 (-165.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:35.174 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35156, posNoise = 6, negNoise = 4
17-03-18 06:21:35.174 -07 000000610 INF: Z Motor: After move to -0.166152, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:35.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:21:35.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:35.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:35.174 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:35.174 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:35.174 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:35.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:35.174 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:35.174 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:35.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:21:35.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:35.174 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:35.174 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:35.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:35.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:35.184 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:35.184 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:35.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:21:35.194 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:21:35.194 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:21:35.194 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:21:35.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36473 150\n [Camera]
17-03-18 06:21:35.394 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:35.854 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 650
17-03-18 06:21:35.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 650
17-03-18 06:21:35.854 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:35.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 650
17-03-18 06:21:35.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 650
17-03-18 06:21:35.854 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:35.854 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:35.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:35.864 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:35.864 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:21:36.044 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36473 842
17-03-18 06:21:36.194 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:36.234 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:21:36.234 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:21:36.234 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:36.244 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:36.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:21:36.244 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:21:36.244 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:36.244 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:36.244 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:21:36.244 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:21:36.414 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1214
17-03-18 06:21:36.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1214
17-03-18 06:21:36.414 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:36.414 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1214
17-03-18 06:21:36.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1214
17-03-18 06:21:36.424 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:36.424 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:36.424 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:21:36.424 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:36.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:21:36.604 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:36.604 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:36.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36473 150' command took 2 ms to send, 1407 ms to get response, and 1412 ms overall
17-03-18 06:21:36.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:36.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166172954066883. ------
17-03-18 06:21:36.614 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:36.614 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17200 mm
17-03-18 06:21:36.614 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:36.614 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:36.614 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:21:36.614 -07 000000579 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:21:36.614 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37573, sync = True, waitForSettling = False)
17-03-18 06:21:36.614 -07 000000438 INF: Z Motor: Moving to -0.171998 mm, started at -0.166173 mm, distance = -5.83 um
17-03-18 06:21:36.624 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:36.624 -07 000000438 INF: FPGA: Xmit ZDACW 37573\n [Z Motor]
17-03-18 06:21:36.744 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:21:36.754 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:36.754 -07 000000438 INF: FPGA: 'ZDACW 37573' command took 120 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 06:21:36.754 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:21:36.764 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-18 06:21:36.764 -07 000000579 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:36.764 -07 000000579 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:36.764 -07 000000579 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:21:36.764 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:36.774 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:36.774 -07 000000447 INF: FPGA: Recv ZDACR 37573
17-03-18 06:21:36.784 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:36.784 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:36.784 -07 000000438 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 06:21:36.824 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:21:36.824 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:21:36.824 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:36.824 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:21:36.824 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:21:36.824 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:36.824 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:36.824 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:21:36.824 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:36.834 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:21:36.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:36.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:36.964 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:36.964 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:21:37.154 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:21:37.154 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:21:37.204 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:37.204 -07 000000462 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:21:37.214 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:37.214 -07 000000579 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:37.214 -07 000000579 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:21:37.214 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.848 mm, average velocity = 2.130 mm/sec
17-03-18 06:21:38.164 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:38.164 -07 000000438 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:21:38.174 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:38.174 -07 000000579 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:38.194 -07 000000579 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:38.194 -07 000000579 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:38.194 -07 000000579 INF: Y Motor: Moved to 74.0068 after 1578 ms (table move)
17-03-18 06:21:38.194 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171998 mm (DAC = 37573)
17-03-18 06:21:38.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.204 -07 000000474 INF: FPGA: Recv ZSGSRD 36062
17-03-18 06:21:38.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:21:38.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.204 -07 000000447 INF: FPGA: Recv ZSGSRD 36071
17-03-18 06:21:38.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:38.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.214 -07 000000591 INF: FPGA: Recv ZSGSRD 36063
17-03-18 06:21:38.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.224 -07 000000438 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:21:38.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.234 -07 000000579 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:21:38.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.244 -07 000000438 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:21:38.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.254 -07 000000474 INF: FPGA: Recv ZSGSRD 36070
17-03-18 06:21:38.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.264 -07 000000462 INF: FPGA: Recv ZSGSRD 36064
17-03-18 06:21:38.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.274 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.274 -07 000000629 INF: FPGA: Recv ZSGSRD 36066
17-03-18 06:21:38.284 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.284 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:38.284 -07 000000592 INF: FPGA: Recv ZSGSRD 36061
17-03-18 06:21:38.294 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.294 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:38.294 -07 000000611 INF: FPGA: Recv ZPIEZORD 32071
17-03-18 06:21:38.304 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.8 V.
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36064 (-171.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36057 (-171.1 uncal um), Max = 36071 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 7, negNoise = 7
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: After move to -0.171998, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: Settle wait time = 1581 ms, measure time = 102 ms (allowed 150 ms), total time = 1683 ms
17-03-18 06:21:38.304 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:38.354 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 06:21:38.354 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:38.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:38.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:38.354 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:38.354 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:38.354 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:38.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:38.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:38.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:38.364 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:38.364 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:38.374 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:21:38.374 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:21:38.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:38.424 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:38.714 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:38.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:38.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:38.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:38.754 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:38.754 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:38.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:21:38.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:21:38.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:38.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:38.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:21:38.854 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:38.854 -07 000000438 INF: Autofocus start
17-03-18 06:21:38.854 -07 000000438 INF: MeasureProfile start
17-03-18 06:21:38.854 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:38.864 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:38.864 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:38.864 -07 000000438 INF: MeasureProfile done
17-03-18 06:21:38.864 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:21:38.864 -07 000000438 INF: Autofocus finished
17-03-18 06:21:39.064 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:39.064 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:39.064 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172006138691602. ----------
17-03-18 06:21:39.064 -07 000000610 INF: Cycle	148	Tile	18	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:39.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36106, sync = True, waitForSettling = True)
17-03-18 06:21:39.074 -07 000000610 INF: Z Motor: Moving to -0.165283 mm, started at -0.172006 mm, distance = 6.72 um
17-03-18 06:21:39.074 -07 000000610 INF: FPGA: Xmit ZDACW 36106\n [Z Motor]
17-03-18 06:21:39.074 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:21:39.084 -07 000000610 INF: FPGA: 'ZDACW 36106' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:39.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:39.084 -07 000000592 INF: FPGA: Recv ZDACR 36106
17-03-18 06:21:39.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:39.144 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.996267,
17-03-18 06:21:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.244 -07 000000474 INF: FPGA: Recv ZSGSRD 35022
17-03-18 06:21:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:21:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.264 -07 000000447 INF: FPGA: Recv ZSGSRD 35024
17-03-18 06:21:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.274 -07 000000629 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:21:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.284 -07 000000474 INF: FPGA: Recv ZSGSRD 35023
17-03-18 06:21:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35019
17-03-18 06:21:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.304 -07 000000502 INF: FPGA: Recv ZSGSRD 35015
17-03-18 06:21:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.314 -07 000000579 INF: FPGA: Recv ZSGSRD 35018
17-03-18 06:21:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.324 -07 000000438 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:21:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:39.334 -07 000000480 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:21:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:39.344 -07 000000502 INF: FPGA: Recv ZPIEZORD 30708
17-03-18 06:21:39.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:39.354 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.5 V.
17-03-18 06:21:39.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35020 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35020 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35015 (-164.4 uncal um), Max = 35024 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:21:39.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35020, posNoise = 4, negNoise = 5
17-03-18 06:21:39.354 -07 000000610 INF: Z Motor: After move to -0.165283, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:39.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:21:39.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:39.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:39.354 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:39.354 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:39.354 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:39.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:39.354 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:39.354 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:39.354 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:21:39.354 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:39.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:39.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:39.364 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:39.364 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:39.364 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:39.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:39.364 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:21:39.364 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:21:39.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:21:39.364 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:21:39.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36282 150\n [Camera]
17-03-18 06:21:39.574 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:40.024 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:40.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:40.024 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:40.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:40.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:40.034 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:40.034 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:40.034 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:40.034 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:40.034 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:21:40.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36282 842
17-03-18 06:21:40.374 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:40.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:21:40.414 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:21:40.414 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:40.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:21:40.414 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:21:40.414 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:40.414 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:40.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:40.414 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:21:40.424 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:21:40.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:40.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:40.594 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:40.594 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:40.594 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:21:40.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:40.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:40.594 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:40.594 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:40.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:21:40.784 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:40.784 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:40.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36282 150' command took 2 ms to send, 1403 ms to get response, and 1412 ms overall
17-03-18 06:21:40.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:21:40.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165299261215604. ------
17-03-18 06:21:40.784 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:40.784 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17160 mm
17-03-18 06:21:40.784 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:40.794 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:40.794 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:21:40.794 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:40.794 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:21:40.794 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:21:40.794 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37485, sync = True, waitForSettling = False)
17-03-18 06:21:40.794 -07 000000480 INF: Z Motor: Moving to -0.171595 mm, started at -0.165299 mm, distance = -6.30 um
17-03-18 06:21:40.804 -07 000000480 INF: FPGA: Xmit ZDACW 37485\n [Z Motor]
17-03-18 06:21:40.804 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:21:40.814 -07 000000480 INF: FPGA: 'ZDACW 37485' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:21:40.814 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:40.814 -07 000000579 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:21:40.824 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:21:40.824 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:40.824 -07 000000501 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:40.824 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:40.824 -07 000000501 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:21:40.824 -07 000000579 INF: FPGA: Recv ZDACR 37485
17-03-18 06:21:40.834 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:40.834 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:40.834 -07 000000480 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:21:40.994 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:21:40.994 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:21:40.994 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:21:40.994 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:40.994 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:21:40.994 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:40.994 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:40.994 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:40.994 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:21:40.994 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:21:40.994 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:41.004 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:21:41.204 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:21:41.204 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:21:41.244 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:41.244 -07 000000462 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:21:41.254 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:41.254 -07 000000501 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:41.254 -07 000000501 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:21:41.254 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-18 06:21:41.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:42.204 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:42.204 -07 000000474 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:21:42.214 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.214 -07 000000501 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:42.234 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:42.234 -07 000000501 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:42.234 -07 000000501 INF: Y Motor: Moved to 74.8306 after 1437 ms (table move)
17-03-18 06:21:42.234 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171595 mm (DAC = 37485)
17-03-18 06:21:42.234 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.234 -07 000000438 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:21:42.244 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:42.244 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:21:42.254 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.254 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35997
17-03-18 06:21:42.264 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.264 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.264 -07 000000579 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:21:42.274 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.274 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.274 -07 000000501 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:21:42.284 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.284 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.284 -07 000000579 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:21:42.294 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.294 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.294 -07 000000480 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:21:42.304 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.304 -07 000000608 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:21:42.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.314 -07 000000438 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:21:42.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:42.324 -07 000000579 INF: FPGA: Recv ZSGSRD 35996
17-03-18 06:21:42.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.334 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:42.334 -07 000000480 INF: FPGA: Recv ZPIEZORD 31977
17-03-18 06:21:42.344 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.9 V.
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36003 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35996 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 6, negNoise = 6
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: After move to -0.171595, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-18 06:21:42.344 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:42.394 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 06:21:42.394 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:42.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:42.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:42.394 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:42.394 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:42.394 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:42.394 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:42.394 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:42.394 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:42.404 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:42.404 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:42.404 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:42.404 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:21:42.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:42.454 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:42.754 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:42.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:42.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:42.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:21:42.794 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:42.794 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:42.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:21:42.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:21:42.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:42.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:42.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:21:42.894 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:42.894 -07 000000608 INF: Autofocus start
17-03-18 06:21:42.894 -07 000000608 INF: MeasureProfile start
17-03-18 06:21:42.894 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:42.904 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:42.904 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:42.904 -07 000000608 INF: MeasureProfile done
17-03-18 06:21:42.904 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:21:42.904 -07 000000608 INF: Autofocus finished
17-03-18 06:21:43.104 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:43.104 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:43.104 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171607837538813. ----------
17-03-18 06:21:43.104 -07 000000610 INF: Cycle	148	Tile	19	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:43.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36000, sync = True, waitForSettling = True)
17-03-18 06:21:43.114 -07 000000610 INF: Z Motor: Moving to -0.164797 mm, started at -0.171608 mm, distance = 6.81 um
17-03-18 06:21:43.114 -07 000000610 INF: FPGA: Xmit ZDACW 36000\n [Z Motor]
17-03-18 06:21:43.114 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:21:43.124 -07 000000610 INF: FPGA: 'ZDACW 36000' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:43.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:43.124 -07 000000474 INF: FPGA: Recv ZDACR 36000
17-03-18 06:21:43.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.284 -07 000000579 INF: FPGA: Recv ZSGSRD 34939
17-03-18 06:21:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.294 -07 000000608 INF: FPGA: Recv ZSGSRD 34940
17-03-18 06:21:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.304 -07 000000480 INF: FPGA: Recv ZSGSRD 34947
17-03-18 06:21:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.314 -07 000000438 INF: FPGA: Recv ZSGSRD 34942
17-03-18 06:21:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.324 -07 000000608 INF: FPGA: Recv ZSGSRD 34946
17-03-18 06:21:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.334 -07 000000462 INF: FPGA: Recv ZSGSRD 34943
17-03-18 06:21:43.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.344 -07 000000579 INF: FPGA: Recv ZSGSRD 34945
17-03-18 06:21:43.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.354 -07 000000480 INF: FPGA: Recv ZSGSRD 34938
17-03-18 06:21:43.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.364 -07 000000382 INF: FPGA: Recv ZSGSRD 34941
17-03-18 06:21:43.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:43.374 -07 000000438 INF: FPGA: Recv ZSGSRD 34944
17-03-18 06:21:43.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:43.384 -07 000000608 INF: FPGA: Recv ZPIEZORD 30609
17-03-18 06:21:43.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:43.394 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.493 V. Piezo Error = -9.5 V.
17-03-18 06:21:43.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34942 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34942 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34938 (-163.9 uncal um), Max = 34947 (-164.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:43.394 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34942, posNoise = 5, negNoise = 4
17-03-18 06:21:43.394 -07 000000610 INF: Z Motor: After move to -0.164797, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:43.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:21:43.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:43.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:43.394 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:43.394 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:43.394 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:43.394 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:43.394 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:43.394 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:43.394 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:43.394 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:43.394 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:43.394 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:43.404 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:43.404 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:43.404 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:43.404 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:43.414 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:21:43.414 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:21:43.414 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:21:43.414 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:21:43.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36177 150\n [Camera]
17-03-18 06:21:43.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:44.074 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:44.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:44.074 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:44.074 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:44.074 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:21:44.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:44.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:44.074 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:44.074 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:44.074 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:21:44.264 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36177 842
17-03-18 06:21:44.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:44.454 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:21:44.454 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:21:44.454 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:44.464 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:21:44.464 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:21:44.464 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:44.464 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:44.464 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:44.464 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:21:44.464 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:21:44.514 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.993549,
17-03-18 06:21:44.634 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:44.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:44.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:44.634 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:44.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:21:44.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:44.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:44.634 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:44.634 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:44.634 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:21:44.824 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:44.824 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:44.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36177 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-18 06:21:45.044 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:21:45.044 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:45.044 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:45.044 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:21:45.044 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:21:45.044 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:45.044 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:45.044 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:21:45.044 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:21:45.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:21:45.054 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:21:45.094 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:21:45.094 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:21:45.134 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 06:21:45.254 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:21:45.254 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:21:45.264 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 06:21:45.264 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:45.264 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:21:45.764 -07 000000438 INF: FPGA: Recv EMIN
17-03-18 06:21:45.764 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:21:45.764 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:21:45.764 -07 000000479 INF: FPGA: Recv EMCUR 
17-03-18 06:21:45.774 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:45.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:21:45.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164798172668546. ------
17-03-18 06:21:45.774 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:45.774 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 06:21:45.774 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:45.774 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:45.774 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:21:45.784 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:21:45.784 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:45.784 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-18 06:21:45.784 -07 000000501 INF: Z Motor: Moving to -0.139277 mm, started at -0.164798 mm, distance = 25.52 um
17-03-18 06:21:45.784 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:21:45.784 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:21:45.794 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:45.794 -07 000000608 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:45.794 -07 000000501 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-18 06:21:45.794 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:21:45.794 -07 000000608 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:21:45.794 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:21:45.804 -07 000000501 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:21:45.804 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:45.814 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:21:45.824 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:45.824 -07 000000479 INF: FPGA: Recv ZDACR 30425
17-03-18 06:21:45.834 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:45.834 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:21:46.004 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:46.004 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-18 06:21:46.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:47.434 -07 000000467 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:21:47.434 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-18 06:21:47.434 -07 000000608 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:21:47.434 -07 000000608 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:21:47.434 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.096 mm/sec
17-03-18 06:21:49.884 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.990831,
17-03-18 06:21:50.284 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:50.284 -07 000000579 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:21:50.294 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.294 -07 000000608 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:50.334 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:50.334 -07 000000608 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:21:50.334 -07 000000608 INF: Y Motor: Moved to 59.9102 after 4554 ms
17-03-18 06:21:50.334 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-18 06:21:50.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.344 -07 000000467 INF: FPGA: Recv ZSGSRD 30973
17-03-18 06:21:50.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:21:50.344 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.344 -07 000000579 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:21:50.354 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.354 -07 000000462 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:21:50.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.364 -07 000000608 INF: FPGA: Recv ZSGSRD 30967
17-03-18 06:21:50.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.374 -07 000000462 INF: FPGA: Recv ZSGSRD 30970
17-03-18 06:21:50.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.384 -07 000000501 INF: FPGA: Recv ZSGSRD 30969
17-03-18 06:21:50.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.394 -07 000000611 INF: FPGA: Recv ZSGSRD 30973
17-03-18 06:21:50.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.404 -07 000000608 INF: FPGA: Recv ZSGSRD 30967
17-03-18 06:21:50.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30971
17-03-18 06:21:50.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:50.424 -07 000000608 INF: FPGA: Recv ZSGSRD 30971
17-03-18 06:21:50.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.434 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:50.434 -07 000000579 INF: FPGA: Recv ZPIEZORD 26423
17-03-18 06:21:50.444 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30970 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30966 (-138.5 uncal um), Max = 30974 (-138.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30970, posNoise = 4, negNoise = 4
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: After move to -0.139277, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: Settle wait time = 4554 ms, measure time = 103 ms (allowed 150 ms), total time = 4657 ms
17-03-18 06:21:50.444 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:50.494 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-18 06:21:50.494 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:50.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:50.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:50.494 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:50.494 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:50.494 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:50.494 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:50.494 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:50.494 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:21:50.514 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 06:21:50.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:50.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:50.524 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:50.524 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:21:50.524 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-18 06:21:50.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:50.574 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:50.874 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:50.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:50.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:50.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:50.914 -07 000000462 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:21:50.914 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:50.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 388 ms overall
17-03-18 06:21:50.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:21:50.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:50.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:50.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:21:51.014 -07 000000474 INF: Image SNR check: start
17-03-18 06:21:51.014 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:51.014 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:51.024 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:21:51.024 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:51.034 -07 000000474 INF: Image SNR check: pass  [peak (Max-Min)=112.27]
17-03-18 06:21:51.034 -07 000000474 INF: Autofocus start
17-03-18 06:21:51.034 -07 000000474 INF: MeasureProfile start
17-03-18 06:21:51.044 -07 000000474 INF: MeasureProfile done
17-03-18 06:21:51.044 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:21:51.044 -07 000000474 INF: Autofocus finished
17-03-18 06:21:51.224 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:51.224 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:51.224 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139281202041472. ----------
17-03-18 06:21:51.224 -07 000000610 INF: Cycle	148	Tile	1	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:51.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28932, sync = True, waitForSettling = True)
17-03-18 06:21:51.234 -07 000000610 INF: Z Motor: Moving to -0.132442 mm, started at -0.139281 mm, distance = 6.84 um
17-03-18 06:21:51.234 -07 000000610 INF: FPGA: Xmit ZDACW 28932\n [Z Motor]
17-03-18 06:21:51.234 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:21:51.244 -07 000000610 INF: FPGA: 'ZDACW 28932' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:51.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:51.244 -07 000000579 INF: FPGA: Recv ZDACR 28932
17-03-18 06:21:51.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:51.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:21:51.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.414 -07 000000592 INF: FPGA: Recv ZSGSRD 29900
17-03-18 06:21:51.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.424 -07 000000462 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:21:51.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.434 -07 000000608 INF: FPGA: Recv ZSGSRD 29903
17-03-18 06:21:51.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29903
17-03-18 06:21:51.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.454 -07 000000474 INF: FPGA: Recv ZSGSRD 29896
17-03-18 06:21:51.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.464 -07 000000592 INF: FPGA: Recv ZSGSRD 29902
17-03-18 06:21:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:21:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:21:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:51.494 -07 000000501 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:21:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:51.504 -07 000000611 INF: FPGA: Recv ZPIEZORD 25298
17-03-18 06:21:51.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:51.514 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -10.1 V.
17-03-18 06:21:51.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29896 (-131.6 uncal um), Max = 29911 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:21:51.514 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 6, negNoise = 9
17-03-18 06:21:51.514 -07 000000610 INF: Z Motor: After move to -0.132442, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:51.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:21:51.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:51.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:51.514 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:51.514 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:51.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:51.514 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:51.514 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:51.514 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:51.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:51.514 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:51.514 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:51.514 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:21:51.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:51.524 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:51.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:21:51.534 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:21:51.534 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:21:51.544 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:51.544 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:21:51.544 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:51.554 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:21:51.554 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 06:21:51.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29109 150\n [Camera]
17-03-18 06:21:51.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:51.854 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:52.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:52.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:52.214 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:52.214 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:52.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:52.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:52.214 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:52.214 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:21:52.214 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:52.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:21:52.404 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29109 842
17-03-18 06:21:52.554 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:52.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:21:52.604 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:21:52.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:52.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:52.614 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:21:52.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:21:52.614 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:21:52.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:52.614 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:52.624 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:21:52.774 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:52.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:52.774 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:52.774 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:52.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:52.774 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:52.884 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:52.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:21:52.894 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:52.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:21:52.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:52.964 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:52.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29109 150' command took 2 ms to send, 1404 ms to get response, and 1412 ms overall
17-03-18 06:21:52.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:21:52.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132439416110496. ------
17-03-18 06:21:52.974 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:52.974 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13884 mm
17-03-18 06:21:52.974 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:52.974 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:52.974 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 30329, sync = True, waitForSettling = False)
17-03-18 06:21:52.974 -07 000000592 INF: Z Motor: Moving to -0.138837 mm, started at -0.132439 mm, distance = -6.40 um
17-03-18 06:21:52.974 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:21:52.974 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:21:52.984 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:52.984 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:52.984 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:21:52.994 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:21:52.994 -07 000000462 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:52.994 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:52.994 -07 000000462 INF: Y Motor: Moving 1332 steps1
17-03-18 06:21:52.994 -07 000000592 INF: FPGA: Xmit ZDACW 30329\n [Z Motor]
17-03-18 06:21:52.994 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:21:53.004 -07 000000592 INF: FPGA: 'ZDACW 30329' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:21:53.004 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:53.014 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:53.024 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:53.024 -07 000000502 INF: FPGA: Recv ZDACR 30329
17-03-18 06:21:53.034 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:21:53.034 -07 000000592 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:21:53.204 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:53.204 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 06:21:53.284 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:21:53.284 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:21:53.284 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:53.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:21:53.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:21:53.284 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:53.294 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:53.294 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:53.294 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 06:21:53.294 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 06:21:53.384 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:21:53.384 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:21:53.434 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:53.434 -07 000000608 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:21:53.444 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:53.444 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:53.444 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:21:53.444 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 06:21:54.394 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:54.394 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:21:54.404 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:54.404 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:54.434 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:54.434 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:54.434 -07 000000462 INF: Y Motor: Moved to 60.7324 after 1460 ms (table move)
17-03-18 06:21:54.434 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138837 mm (DAC = 30329)
17-03-18 06:21:54.434 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.444 -07 000000438 INF: FPGA: Recv ZSGSRD 30896
17-03-18 06:21:54.444 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:21:54.444 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.444 -07 000000611 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:21:54.454 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:54.454 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.454 -07 000000611 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:21:54.464 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.464 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.464 -07 000000502 INF: FPGA: Recv ZSGSRD 30901
17-03-18 06:21:54.474 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.474 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.474 -07 000000608 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:21:54.484 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.484 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.484 -07 000000579 INF: FPGA: Recv ZSGSRD 30901
17-03-18 06:21:54.494 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.494 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:21:54.504 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.504 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.504 -07 000000467 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:21:54.514 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.514 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.514 -07 000000608 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:21:54.524 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.524 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:54.524 -07 000000608 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:21:54.534 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.534 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:54.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 26615
17-03-18 06:21:54.544 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.4 V.
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30901 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30901 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30893 (-138.0 uncal um), Max = 30910 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30901, posNoise = 9, negNoise = 8
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: After move to -0.138837, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: Settle wait time = 1463 ms, measure time = 102 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:21:54.544 -07 000000629 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:54.594 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 06:21:54.594 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:54.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:54.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:54.594 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:54.594 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:54.594 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:54.594 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:54.594 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:54.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:54.604 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:54.604 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:54.614 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:21:54.614 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:21:54.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:54.664 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:54.964 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:54.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:54.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:54.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:21:55.004 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:55.004 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:55.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:21:55.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:21:55.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:55.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:21:55.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:21:55.104 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:55.104 -07 000000474 INF: Autofocus start
17-03-18 06:21:55.104 -07 000000474 INF: MeasureProfile start
17-03-18 06:21:55.104 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:55.114 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:55.114 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:55.114 -07 000000474 INF: MeasureProfile done
17-03-18 06:21:55.114 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:21:55.114 -07 000000474 INF: Autofocus finished
17-03-18 06:21:55.254 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.012614,
17-03-18 06:21:55.314 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:55.314 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:55.314 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.13883793140369. ----------
17-03-18 06:21:55.314 -07 000000610 INF: Cycle	148	Tile	2	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:55.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28836, sync = True, waitForSettling = True)
17-03-18 06:21:55.324 -07 000000610 INF: Z Motor: Moving to -0.132003 mm, started at -0.138838 mm, distance = 6.84 um
17-03-18 06:21:55.324 -07 000000610 INF: FPGA: Xmit ZDACW 28836\n [Z Motor]
17-03-18 06:21:55.324 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:21:55.334 -07 000000610 INF: FPGA: 'ZDACW 28836' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:55.334 -07 000000611 INF: FPGA: Recv ZDACR 28836
17-03-18 06:21:55.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.494 -07 000000579 INF: FPGA: Recv ZSGSRD 29833
17-03-18 06:21:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.504 -07 000000611 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:21:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.514 -07 000000629 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:21:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.524 -07 000000591 INF: FPGA: Recv ZSGSRD 29838
17-03-18 06:21:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.534 -07 000000629 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:21:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:21:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.554 -07 000000629 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:21:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.584 -07 000000591 INF: FPGA: Recv ZSGSRD 29836
17-03-18 06:21:55.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:55.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.614 -07 000000611 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:21:55.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:55.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:55.624 -07 000000579 INF: FPGA: Recv ZSGSRD 29835
17-03-18 06:21:55.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:55.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:55.644 -07 000000629 INF: FPGA: Recv ZPIEZORD 25234
17-03-18 06:21:55.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:55.654 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -10.1 V.
17-03-18 06:21:55.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29837 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29837 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29833 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:55.654 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29837, posNoise = 3, negNoise = 4
17-03-18 06:21:55.654 -07 000000610 INF: Z Motor: After move to -0.132003, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:55.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 06:21:55.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:55.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:55.654 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:55.654 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:55.654 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:55.654 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:55.654 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:55.654 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:55.654 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:55.654 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:55.654 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:21:55.654 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:55.664 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:21:55.664 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:55.664 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:55.664 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:55.674 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:21:55.674 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:21:55.674 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:21:55.674 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:21:55.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29013 150\n [Camera]
17-03-18 06:21:55.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:21:56.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:21:56.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:21:56.334 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:56.334 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:21:56.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:21:56.334 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:56.344 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:56.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:21:56.344 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:56.344 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:21:56.524 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29013 842
17-03-18 06:21:56.674 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:21:56.734 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:21:56.734 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:21:56.734 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:56.744 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:56.744 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:56.744 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:21:56.744 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:21:56.744 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:56.744 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:21:56.754 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:21:56.854 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:21:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:21:56.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:21:56.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:21:56.894 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:21:56.904 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:21:56.904 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:21:56.904 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:21:56.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:21:56.904 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:21:56.904 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:21:56.904 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:21:57.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:21:57.094 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:21:57.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29013 150' command took 2 ms to send, 1400 ms to get response, and 1411 ms overall
17-03-18 06:21:57.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:21:57.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132002569684857. ------
17-03-18 06:21:57.094 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:57.094 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13881 mm
17-03-18 06:21:57.094 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:21:57.094 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:21:57.094 -07 000000591 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:21:57.104 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30323, sync = True, waitForSettling = False)
17-03-18 06:21:57.104 -07 000000629 INF: Z Motor: Moving to -0.138810 mm, started at -0.132003 mm, distance = -6.81 um
17-03-18 06:21:57.104 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:57.104 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:57.104 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 06:21:57.104 -07 000000474 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:21:57.114 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:57.114 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:57.114 -07 000000591 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:21:57.114 -07 000000591 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:21:57.114 -07 000000629 INF: FPGA: Xmit ZDACW 30323\n [Z Motor]
17-03-18 06:21:57.114 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:21:57.124 -07 000000629 INF: FPGA: 'ZDACW 30323' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:21:57.124 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:21:57.134 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:21:57.144 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:57.144 -07 000000382 INF: FPGA: Recv ZDACR 30323
17-03-18 06:21:57.154 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:21:57.154 -07 000000629 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:21:57.304 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:21:57.304 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:21:57.304 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:57.304 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:21:57.304 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:21:57.304 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:57.314 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:57.314 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:21:57.314 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:21:57.314 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:21:57.324 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:21:57.324 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 06:21:57.504 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:21:57.504 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:21:57.554 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:57.564 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:21:57.564 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:21:57.564 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:57.564 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:21:57.564 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-18 06:21:58.514 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:21:58.514 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:21:58.524 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:58.524 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:21:58.554 -07 000000591 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:21:58.554 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:21:58.554 -07 000000591 INF: Y Motor: Moved to 61.5630 after 1453 ms (table move)
17-03-18 06:21:58.554 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138810 mm (DAC = 30323)
17-03-18 06:21:58.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.564 -07 000000382 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:21:58.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:21:58.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.564 -07 000000591 INF: FPGA: Recv ZSGSRD 30894
17-03-18 06:21:58.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:21:58.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.574 -07 000000474 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:21:58.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.584 -07 000000591 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:21:58.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.594 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.594 -07 000000502 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:21:58.604 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.604 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.604 -07 000000382 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:21:58.614 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.614 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.614 -07 000000461 INF: FPGA: Recv ZSGSRD 30897
17-03-18 06:21:58.624 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.624 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30894
17-03-18 06:21:58.634 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.634 -07 000000474 INF: FPGA: Recv ZSGSRD 30898
17-03-18 06:21:58.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:58.644 -07 000000585 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:21:58.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.654 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:58.654 -07 000000585 INF: FPGA: Recv ZPIEZORD 26667
17-03-18 06:21:58.664 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.3 V.
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30898 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30894 (-138.0 uncal um), Max = 30904 (-138.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30898, posNoise = 6, negNoise = 4
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: After move to -0.138810, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: Settle wait time = 1457 ms, measure time = 103 ms (allowed 150 ms), total time = 1560 ms
17-03-18 06:21:58.664 -07 000000579 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:21:58.714 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 06:21:58.714 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:21:58.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:58.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:58.714 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:58.714 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:21:58.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:58.714 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:58.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:21:58.714 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:21:58.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:21:58.724 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:21:58.724 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:21:58.724 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:21:58.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:21:58.774 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:21:59.074 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:21:59.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:21:59.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:21:59.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) start.
17-03-18 06:21:59.114 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:21:59.114 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:21:59.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:21:59.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:21:59.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:21:59.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:21:59.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:21:59.214 -07 000000502 INF: Autofocus start
17-03-18 06:21:59.214 -07 000000502 INF: MeasureProfile start
17-03-18 06:21:59.214 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:21:59.224 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:21:59.224 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:21:59.224 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:21:59.224 -07 000000502 INF: MeasureProfile done
17-03-18 06:21:59.224 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:21:59.224 -07 000000502 INF: Autofocus finished
17-03-18 06:21:59.424 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:21:59.424 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:21:59.424 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138818658767265. ----------
17-03-18 06:21:59.434 -07 000000610 INF: Cycle	148	Tile	3	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:21:59.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-18 06:21:59.434 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138819 mm, distance = 6.77 um
17-03-18 06:21:59.434 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-18 06:21:59.434 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:21:59.444 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:21:59.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:21:59.444 -07 000000382 INF: FPGA: Recv ZDACR 28847
17-03-18 06:21:59.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:21:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.604 -07 000000438 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:21:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:21:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:21:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.624 -07 000000447 INF: FPGA: Recv ZSGSRD 29845
17-03-18 06:21:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.634 -07 000000474 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:21:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.644 -07 000000382 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:21:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.654 -07 000000447 INF: FPGA: Recv ZSGSRD 29853
17-03-18 06:21:59.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.664 -07 000000438 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:21:59.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:21:59.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.684 -07 000000447 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:21:59.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:21:59.694 -07 000000461 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:21:59.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:21:59.704 -07 000000447 INF: FPGA: Recv ZPIEZORD 25289
17-03-18 06:21:59.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:21:59.714 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 06:21:59.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29840 (-131.2 uncal um), Max = 29853 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:21:59.714 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 7, negNoise = 6
17-03-18 06:21:59.714 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:21:59.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:21:59.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:21:59.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:21:59.714 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:21:59.714 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:21:59.714 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:21:59.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:21:59.714 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:21:59.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:21:59.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:21:59.714 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:21:59.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:21:59.714 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:21:59.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:21:59.724 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:21:59.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:21:59.724 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:21:59.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:21:59.734 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:21:59.734 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:21:59.734 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:21:59.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29024 150\n [Camera]
17-03-18 06:21:59.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:00.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:00.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:00.394 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:00.394 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:00.394 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:22:00.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:00.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:00.404 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:00.404 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:00.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:22:00.584 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 842
17-03-18 06:22:00.624 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.042558,
17-03-18 06:22:00.734 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:00.784 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:22:00.784 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:22:00.784 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:00.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:22:00.784 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:22:00.784 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:00.784 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:00.784 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:22:00.784 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:00.794 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:22:00.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:22:00.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:22:00.964 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:00.964 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:00.964 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:22:00.964 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:22:00.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:22:00.964 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:00.964 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:00.964 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:22:01.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:22:01.144 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:01.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29024 150' command took 2 ms to send, 1408 ms to get response, and 1412 ms overall
17-03-18 06:22:01.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:01.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132060387594133. ------
17-03-18 06:22:01.154 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13851 mm
17-03-18 06:22:01.154 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:01.154 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:01.154 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:22:01.154 -07 000000474 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:22:01.154 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30258, sync = True, waitForSettling = False)
17-03-18 06:22:01.154 -07 000000447 INF: Z Motor: Moving to -0.138512 mm, started at -0.132060 mm, distance = -6.45 um
17-03-18 06:22:01.154 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:01.164 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:22:01.164 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:01.164 -07 000000479 INF: FPGA: Recv YRDPOS 126082
17-03-18 06:22:01.174 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:22:01.174 -07 000000474 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:01.174 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:01.174 -07 000000474 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:01.174 -07 000000474 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:22:01.184 -07 000000447 INF: FPGA: Xmit ZDACW 30258\n [Z Motor]
17-03-18 06:22:01.184 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:22:01.194 -07 000000447 INF: FPGA: 'ZDACW 30258' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:22:01.194 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:01.204 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:01.204 -07 000000479 INF: FPGA: Recv ZDACR 30258
17-03-18 06:22:01.214 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:22:01.214 -07 000000447 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:22:01.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:22:01.364 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:22:01.364 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:01.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:22:01.364 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:22:01.364 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:01.374 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:01.374 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:01.374 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 06:22:01.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:22:01.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:22:01.384 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:22:01.564 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:22:01.564 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:22:01.624 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:01.624 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:22:01.634 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:01.634 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:01.634 -07 000000474 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:22:01.634 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 06:22:01.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:02.584 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:02.584 -07 000000438 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:22:02.594 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:02.594 -07 000000474 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:02.624 -07 000000474 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:02.624 -07 000000474 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:02.624 -07 000000474 INF: Y Motor: Moved to 62.3945 after 1464 ms (table move)
17-03-18 06:22:02.624 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138512 mm (DAC = 30258)
17-03-18 06:22:02.624 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.624 -07 000000447 INF: FPGA: Recv ZSGSRD 30860
17-03-18 06:22:02.634 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:22:02.634 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.634 -07 000000447 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:22:02.644 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.644 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.644 -07 000000592 INF: FPGA: Recv ZSGSRD 30846
17-03-18 06:22:02.654 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.654 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.654 -07 000000447 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:22:02.664 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.664 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.664 -07 000000591 INF: FPGA: Recv ZSGSRD 30849
17-03-18 06:22:02.674 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:22:02.674 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.674 -07 000000592 INF: FPGA: Recv ZSGSRD 30858
17-03-18 06:22:02.684 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.684 -07 000000591 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:22:02.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.694 -07 000000592 INF: FPGA: Recv ZSGSRD 30858
17-03-18 06:22:02.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.704 -07 000000591 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:22:02.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:02.714 -07 000000591 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:22:02.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.724 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:02.724 -07 000000591 INF: FPGA: Recv ZPIEZORD 26652
17-03-18 06:22:02.734 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.2 V.
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30853 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30852 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30845 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30853, posNoise = 7, negNoise = 8
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: After move to -0.138512, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:22:02.734 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:02.784 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:22:02.784 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:02.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:02.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:02.784 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:02.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:02.784 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:02.784 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:02.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:02.784 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:02.784 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:02.784 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:02.794 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:22:02.794 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:22:02.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:02.844 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:03.144 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:03.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:03.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:03.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 06:22:03.184 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:03.184 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:03.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:22:03.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:22:03.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:03.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:22:03.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:22:03.284 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:03.284 -07 000000438 INF: Autofocus start
17-03-18 06:22:03.284 -07 000000438 INF: MeasureProfile start
17-03-18 06:22:03.284 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:03.294 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:03.294 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:03.294 -07 000000438 INF: MeasureProfile done
17-03-18 06:22:03.294 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:22:03.294 -07 000000438 INF: Autofocus finished
17-03-18 06:22:03.494 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:03.494 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:03.494 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138529569220886. ----------
17-03-18 06:22:03.494 -07 000000610 INF: Cycle	148	Tile	4	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:03.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28753, sync = True, waitForSettling = True)
17-03-18 06:22:03.504 -07 000000610 INF: Z Motor: Moving to -0.131623 mm, started at -0.138530 mm, distance = 6.91 um
17-03-18 06:22:03.504 -07 000000610 INF: FPGA: Xmit ZDACW 28753\n [Z Motor]
17-03-18 06:22:03.504 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:22:03.514 -07 000000610 INF: FPGA: 'ZDACW 28753' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:03.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:03.514 -07 000000447 INF: FPGA: Recv ZDACR 28753
17-03-18 06:22:03.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.674 -07 000000592 INF: FPGA: Recv ZSGSRD 29787
17-03-18 06:22:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.684 -07 000000461 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:22:03.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.694 -07 000000611 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:22:03.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.704 -07 000000461 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:22:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.714 -07 000000611 INF: FPGA: Recv ZSGSRD 29778
17-03-18 06:22:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.724 -07 000000461 INF: FPGA: Recv ZSGSRD 29779
17-03-18 06:22:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.734 -07 000000447 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:22:03.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.744 -07 000000592 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:22:03.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.754 -07 000000474 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:22:03.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:03.764 -07 000000592 INF: FPGA: Recv ZSGSRD 29770
17-03-18 06:22:03.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:03.774 -07 000000461 INF: FPGA: Recv ZPIEZORD 25252
17-03-18 06:22:03.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:03.784 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V.
17-03-18 06:22:03.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29779 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29778 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29787 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:22:03.784 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29779, posNoise = 8, negNoise = 9
17-03-18 06:22:03.784 -07 000000610 INF: Z Motor: After move to -0.131623, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:03.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:22:03.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:03.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:03.784 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:03.784 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:03.784 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:03.784 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:03.784 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:03.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:03.784 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:22:03.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:03.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:03.784 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:03.794 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:03.794 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:03.794 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:03.794 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:03.804 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:22:03.804 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:03.804 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:22:03.804 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:22:03.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28930 150\n [Camera]
17-03-18 06:22:04.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:04.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:22:04.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:22:04.464 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:04.464 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:04.464 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:22:04.464 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:22:04.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:22:04.464 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:04.464 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:04.464 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:22:04.654 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28930 842
17-03-18 06:22:04.804 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:04.864 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:22:04.864 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:22:04.864 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:04.864 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:22:04.864 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:22:04.864 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:04.864 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:04.864 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:22:04.864 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:04.874 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:22:05.024 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1214
17-03-18 06:22:05.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1214
17-03-18 06:22:05.024 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:05.024 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:05.024 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:22:05.024 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1214
17-03-18 06:22:05.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1214
17-03-18 06:22:05.024 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:05.024 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:05.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 06:22:05.214 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:22:05.214 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:05.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28930 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-18 06:22:05.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:05.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131629965380635. ------
17-03-18 06:22:05.214 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:05.214 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13830 mm
17-03-18 06:22:05.214 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:05.224 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30213, sync = True, waitForSettling = False)
17-03-18 06:22:05.224 -07 000000479 INF: Z Motor: Moving to -0.138306 mm, started at -0.131630 mm, distance = -6.68 um
17-03-18 06:22:05.224 -07 000000479 INF: FPGA: Xmit ZDACW 30213\n [Z Motor]
17-03-18 06:22:05.224 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:22:05.224 -07 000000592 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:22:05.234 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:05.424 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:22:05.424 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:22:05.424 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:05.424 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:05.424 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:22:05.424 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:22:05.424 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:05.434 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:22:05.434 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:22:05.434 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:22:05.444 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:05.444 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:22:05.444 -07 000000474 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:22:05.444 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 225 ms overall
17-03-18 06:22:05.444 -07 000000479 INF: FPGA: 'ZDACW 30213' command took 0 ms to send, 215 ms to get response, and 222 ms overall
17-03-18 06:22:05.444 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:05.444 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 222 ms overall
17-03-18 06:22:05.444 -07 000000592 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:05.444 -07 000000474 INF: FPGA: Recv ZDACR 30213
17-03-18 06:22:05.454 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:05.454 -07 000000479 INF: Z Motor: MoveAbsStepped took 227 ms (did NOT wait for settling yet))
17-03-18 06:22:05.454 -07 000000592 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:05.454 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:05.454 -07 000000592 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:22:05.464 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:05.654 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:05.654 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-18 06:22:05.834 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:22:05.834 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:22:05.894 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:05.894 -07 000000591 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:22:05.904 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:05.904 -07 000000592 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:05.904 -07 000000592 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:22:05.904 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-18 06:22:05.994 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.989471,
17-03-18 06:22:06.854 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:06.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:06.854 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:22:06.864 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.864 -07 000000592 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:06.894 -07 000000592 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:06.894 -07 000000592 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:06.894 -07 000000592 INF: Y Motor: Moved to 63.2227 after 1671 ms (table move)
17-03-18 06:22:06.894 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138306 mm (DAC = 30213)
17-03-18 06:22:06.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.904 -07 000000591 INF: FPGA: Recv ZSGSRD 30820
17-03-18 06:22:06.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:22:06.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.904 -07 000000447 INF: FPGA: Recv ZSGSRD 30823
17-03-18 06:22:06.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.914 -07 000000479 INF: FPGA: Recv ZSGSRD 30819
17-03-18 06:22:06.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.924 -07 000000447 INF: FPGA: Recv ZSGSRD 30817
17-03-18 06:22:06.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.934 -07 000000479 INF: FPGA: Recv ZSGSRD 30815
17-03-18 06:22:06.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.944 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.944 -07 000000608 INF: FPGA: Recv ZSGSRD 30817
17-03-18 06:22:06.954 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.954 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.954 -07 000000501 INF: FPGA: Recv ZSGSRD 30820
17-03-18 06:22:06.964 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.964 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.964 -07 000000608 INF: FPGA: Recv ZSGSRD 30812
17-03-18 06:22:06.974 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.974 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.974 -07 000000501 INF: FPGA: Recv ZSGSRD 30820
17-03-18 06:22:06.984 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.984 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:06.984 -07 000000608 INF: FPGA: Recv ZSGSRD 30827
17-03-18 06:22:06.994 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:06.994 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:06.994 -07 000000501 INF: FPGA: Recv ZPIEZORD 26621
17-03-18 06:22:07.004 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.2 V.
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30819 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30812 (-137.5 uncal um), Max = 30827 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30819, posNoise = 8, negNoise = 7
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: After move to -0.138306, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: Settle wait time = 1675 ms, measure time = 103 ms (allowed 150 ms), total time = 1778 ms
17-03-18 06:22:07.004 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:07.054 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1830 ms
17-03-18 06:22:07.054 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:07.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:07.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:07.054 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:07.054 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:07.054 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:07.054 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:07.064 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:22:07.064 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:07.064 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:07.064 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:07.074 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:22:07.074 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:22:07.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:07.114 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:07.414 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:07.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:07.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:07.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 06:22:07.454 -07 000000608 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:22:07.464 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:07.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 06:22:07.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:22:07.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:07.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:22:07.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:22:07.564 -07 000000608 INF: Autofocus start
17-03-18 06:22:07.564 -07 000000608 INF: MeasureProfile start
17-03-18 06:22:07.564 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:07.564 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:07.574 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:07.574 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:07.574 -07 000000608 INF: MeasureProfile done
17-03-18 06:22:07.574 -07 000000608 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 06:22:07.574 -07 000000608 INF: Autofocus finished
17-03-18 06:22:07.774 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:07.774 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:07.774 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138311146008066. ----------
17-03-18 06:22:07.774 -07 000000610 INF: Cycle	148	Tile	5	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:07.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28656, sync = True, waitForSettling = True)
17-03-18 06:22:07.784 -07 000000610 INF: Z Motor: Moving to -0.131179 mm, started at -0.138311 mm, distance = 7.13 um
17-03-18 06:22:07.784 -07 000000610 INF: FPGA: Xmit ZDACW 28656\n [Z Motor]
17-03-18 06:22:07.784 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:22:07.794 -07 000000610 INF: FPGA: 'ZDACW 28656' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:07.794 -07 000000479 INF: FPGA: Recv ZDACR 28656
17-03-18 06:22:07.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:07.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29708
17-03-18 06:22:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:07.964 -07 000000474 INF: FPGA: Recv ZSGSRD 29712
17-03-18 06:22:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:07.974 -07 000000447 INF: FPGA: Recv ZSGSRD 29705
17-03-18 06:22:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:07.984 -07 000000479 INF: FPGA: Recv ZSGSRD 29712
17-03-18 06:22:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:07.994 -07 000000592 INF: FPGA: Recv ZSGSRD 29719
17-03-18 06:22:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:08.004 -07 000000474 INF: FPGA: Recv ZSGSRD 29709
17-03-18 06:22:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:08.014 -07 000000474 INF: FPGA: Recv ZSGSRD 29711
17-03-18 06:22:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:08.024 -07 000000447 INF: FPGA: Recv ZSGSRD 29708
17-03-18 06:22:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:08.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29714
17-03-18 06:22:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:08.044 -07 000000479 INF: FPGA: Recv ZSGSRD 29709
17-03-18 06:22:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:08.054 -07 000000591 INF: FPGA: Recv ZPIEZORD 25177
17-03-18 06:22:08.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:08.064 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.9 V.
17-03-18 06:22:08.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29705 (-130.4 uncal um), Max = 29719 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:22:08.064 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 8, negNoise = 6
17-03-18 06:22:08.064 -07 000000610 INF: Z Motor: After move to -0.131179, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:08.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:22:08.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:08.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:08.064 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:08.064 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:08.064 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:08.064 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:08.064 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:08.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:08.064 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:08.064 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:08.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:22:08.064 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:08.074 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:08.074 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:08.074 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:08.074 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:08.074 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:22:08.074 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:22:08.074 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:22:08.074 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:08.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28833 150\n [Camera]
17-03-18 06:22:08.284 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:08.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:08.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:08.744 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:08.744 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:08.744 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:22:08.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:08.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:08.744 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:08.744 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:08.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:22:08.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28833 842
17-03-18 06:22:09.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:09.144 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:22:09.144 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:22:09.144 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:09.144 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:22:09.144 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:22:09.144 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:09.144 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:09.144 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:22:09.144 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:09.154 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:22:09.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:09.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:09.304 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:09.304 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:09.304 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:22:09.304 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:09.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:09.304 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:09.304 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:09.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:22:09.494 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:09.494 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:09.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28833 150' command took 2 ms to send, 1406 ms to get response, and 1411 ms overall
17-03-18 06:22:09.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:09.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131193118954995. ------
17-03-18 06:22:09.504 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:09.504 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13761 mm
17-03-18 06:22:09.504 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:09.504 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:22:09.504 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:22:09.504 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:09.504 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30061, sync = True, waitForSettling = False)
17-03-18 06:22:09.504 -07 000000474 INF: Z Motor: Moving to -0.137610 mm, started at -0.131193 mm, distance = -6.42 um
17-03-18 06:22:09.514 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:09.514 -07 000000474 INF: FPGA: Xmit ZDACW 30061\n [Z Motor]
17-03-18 06:22:09.524 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:09.534 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:09.704 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:22:09.704 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:22:09.704 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:09.714 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:22:09.714 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:22:09.714 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:09.714 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:09.714 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:22:09.714 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:22:09.724 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:22:09.734 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:22:09.734 -07 000000591 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:22:09.734 -07 000000474 INF: FPGA: 'ZDACW 30061' command took 0 ms to send, 211 ms to get response, and 222 ms overall
17-03-18 06:22:09.734 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 223 ms overall
17-03-18 06:22:09.734 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:09.734 -07 000000479 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:09.734 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:09.734 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:22:09.734 -07 000000591 INF: FPGA: Recv ZDACR 30061
17-03-18 06:22:09.734 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:09.734 -07 000000479 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:22:09.744 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:09.744 -07 000000474 INF: Z Motor: MoveAbsStepped took 231 ms (did NOT wait for settling yet))
17-03-18 06:22:09.744 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:10.114 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:22:10.114 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:22:10.174 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:10.174 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:22:10.184 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:10.184 -07 000000479 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:10.184 -07 000000479 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:22:10.184 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-18 06:22:11.134 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:11.134 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:22:11.144 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:11.144 -07 000000479 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:11.174 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:11.174 -07 000000479 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:11.174 -07 000000479 INF: Y Motor: Moved to 64.0562 after 1663 ms (table move)
17-03-18 06:22:11.174 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137610 mm (DAC = 30061)
17-03-18 06:22:11.174 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.174 -07 000000479 INF: FPGA: Recv ZSGSRD 30713
17-03-18 06:22:11.184 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:11.184 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.184 -07 000000591 INF: FPGA: Recv ZSGSRD 30712
17-03-18 06:22:11.194 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.194 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.194 -07 000000608 INF: FPGA: Recv ZSGSRD 30711
17-03-18 06:22:11.204 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.204 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.204 -07 000000591 INF: FPGA: Recv ZSGSRD 30709
17-03-18 06:22:11.214 -07 000000592 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.214 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.214 -07 000000608 INF: FPGA: Recv ZSGSRD 30710
17-03-18 06:22:11.224 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.224 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.224 -07 000000591 INF: FPGA: Recv ZSGSRD 30710
17-03-18 06:22:11.234 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.234 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.234 -07 000000479 INF: FPGA: Recv ZSGSRD 30706
17-03-18 06:22:11.244 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.244 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.244 -07 000000591 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:22:11.254 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.254 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.254 -07 000000479 INF: FPGA: Recv ZSGSRD 30712
17-03-18 06:22:11.264 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.264 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:11.264 -07 000000479 INF: FPGA: Recv ZSGSRD 30714
17-03-18 06:22:11.274 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.274 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:11.274 -07 000000479 INF: FPGA: Recv ZPIEZORD 26511
17-03-18 06:22:11.284 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.2 V.
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30712 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30712 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30706 (-136.8 uncal um), Max = 30718 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30712, posNoise = 6, negNoise = 6
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: After move to -0.137610, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: Settle wait time = 1665 ms, measure time = 106 ms (allowed 150 ms), total time = 1771 ms
17-03-18 06:22:11.284 -07 000000592 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:11.334 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1824 ms
17-03-18 06:22:11.334 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:11.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:11.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:11.334 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:11.334 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:11.334 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:11.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:11.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:22:11.334 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:11.344 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:11.344 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:11.354 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:22:11.354 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:22:11.364 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.969015,
17-03-18 06:22:11.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:11.414 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:11.714 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:11.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:11.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:11.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:22:11.754 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:11.754 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:11.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 401 ms overall
17-03-18 06:22:11.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:22:11.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:11.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:22:11.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:22:11.854 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:11.854 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:11.854 -07 000000479 INF: Autofocus start
17-03-18 06:22:11.854 -07 000000479 INF: MeasureProfile start
17-03-18 06:22:11.864 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:11.864 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:11.864 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:11.864 -07 000000479 INF: MeasureProfile done
17-03-18 06:22:11.874 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:22:11.874 -07 000000479 INF: Autofocus finished
17-03-18 06:22:12.064 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:12.064 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:22:12.074 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137623755308898. ----------
17-03-18 06:22:12.074 -07 000000610 INF: Cycle	148	Tile	6	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:12.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28586, sync = True, waitForSettling = True)
17-03-18 06:22:12.074 -07 000000610 INF: Z Motor: Moving to -0.130858 mm, started at -0.137624 mm, distance = 6.77 um
17-03-18 06:22:12.074 -07 000000610 INF: FPGA: Xmit ZDACW 28586\n [Z Motor]
17-03-18 06:22:12.074 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:22:12.084 -07 000000610 INF: FPGA: 'ZDACW 28586' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:12.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:12.084 -07 000000591 INF: FPGA: Recv ZDACR 28586
17-03-18 06:22:12.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:12.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.244 -07 000000479 INF: FPGA: Recv ZSGSRD 29662
17-03-18 06:22:12.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29660
17-03-18 06:22:12.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.264 -07 000000461 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:22:12.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.274 -07 000000569 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:22:12.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.284 -07 000000479 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:22:12.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.294 -07 000000592 INF: FPGA: Recv ZSGSRD 29661
17-03-18 06:22:12.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.304 -07 000000461 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:22:12.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.314 -07 000000608 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:22:12.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.324 -07 000000591 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:22:12.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:12.334 -07 000000579 INF: FPGA: Recv ZSGSRD 29655
17-03-18 06:22:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:12.344 -07 000000461 INF: FPGA: Recv ZPIEZORD 25124
17-03-18 06:22:12.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:12.354 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.9 V.
17-03-18 06:22:12.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29655 (-130.1 uncal um), Max = 29668 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:22:12.354 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 8, negNoise = 5
17-03-18 06:22:12.354 -07 000000610 INF: Z Motor: After move to -0.130858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:12.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:22:12.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:12.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:12.354 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:12.354 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:12.354 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:12.354 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:12.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:12.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:12.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:12.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:12.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:12.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:12.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:12.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:12.364 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:12.364 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:12.374 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:22:12.374 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:22:12.374 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:22:12.374 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:12.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28762 150\n [Camera]
17-03-18 06:22:12.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:13.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:13.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:13.034 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:13.034 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:13.034 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:22:13.034 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:13.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:13.034 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:13.034 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:13.034 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:22:13.224 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 844
17-03-18 06:22:13.374 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:13.414 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:22:13.414 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:22:13.414 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:13.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:22:13.414 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:22:13.414 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:13.414 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:13.414 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:22:13.414 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:13.424 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:22:13.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:13.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:13.594 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:13.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:13.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:13.734 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:13.744 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:13.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:22:13.744 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:13.744 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:22:14.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:22:14.144 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:22:14.144 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:14.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:22:14.144 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:22:14.144 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:14.144 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:14.144 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:14.144 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 552 ms.
17-03-18 06:22:14.154 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:22:14.154 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:14.154 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:14.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28762 150' command took 2 ms to send, 1777 ms to get response, and 1783 ms overall
17-03-18 06:22:14.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:14.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130865484135765. ------
17-03-18 06:22:14.164 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:14.164 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13746 mm
17-03-18 06:22:14.164 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:15.194 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:22:15.194 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:22:15.194 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:15.724 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:15.724 -07 000000611 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:22:15.724 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1550 ms to get response, and 1557 ms overall
17-03-18 06:22:15.724 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 527 ms overall
17-03-18 06:22:15.724 -07 000000382 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:15.724 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:15.724 -07 000000382 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:22:15.724 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30029, sync = True, waitForSettling = False)
17-03-18 06:22:15.724 -07 000000611 INF: Z Motor: Moving to -0.137464 mm, started at -0.130865 mm, distance = -6.60 um
17-03-18 06:22:15.724 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:15.734 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:15.744 -07 000000611 INF: FPGA: Xmit ZDACW 30029\n [Z Motor]
17-03-18 06:22:16.254 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:22:16.254 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:16.254 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:22:16.254 -07 000000611 INF: FPGA: 'ZDACW 30029' command took 0 ms to send, 506 ms to get response, and 534 ms overall
17-03-18 06:22:16.254 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:16.254 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 517 ms to get response, and 535 ms overall
17-03-18 06:22:16.254 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 526 ms to get response, and 535 ms overall
17-03-18 06:22:16.264 -07 000000579 INF: FPGA: Recv ZDACR 30029
17-03-18 06:22:16.264 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:22:16.264 -07 000000611 INF: Z Motor: MoveAbsStepped took 540 ms (did NOT wait for settling yet))
17-03-18 06:22:16.314 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:16.314 -07 000000579 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:22:16.324 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:16.324 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:16.324 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:22:16.324 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 536 ms, distance = 0.836 mm, average velocity = 1.561 mm/sec
17-03-18 06:22:16.744 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.016692,
17-03-18 06:22:16.854 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:17.274 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:17.274 -07 000000611 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:22:17.284 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:17.284 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:17.314 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:17.314 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:17.314 -07 000000382 INF: Y Motor: Moved to 64.8779 after 2118 ms (table move)
17-03-18 06:22:17.314 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137464 mm (DAC = 30029)
17-03-18 06:22:17.314 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.314 -07 000000467 INF: FPGA: Recv ZSGSRD 30695
17-03-18 06:22:17.324 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:17.324 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.324 -07 000000480 INF: FPGA: Recv ZSGSRD 30680
17-03-18 06:22:17.334 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.334 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30680
17-03-18 06:22:17.344 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.344 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.344 -07 000000480 INF: FPGA: Recv ZSGSRD 30690
17-03-18 06:22:17.354 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.354 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.354 -07 000000382 INF: FPGA: Recv ZSGSRD 30694
17-03-18 06:22:17.364 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.364 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.364 -07 000000480 INF: FPGA: Recv ZSGSRD 30680
17-03-18 06:22:17.374 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.374 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.374 -07 000000629 INF: FPGA: Recv ZSGSRD 30691
17-03-18 06:22:17.384 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.384 -07 000000480 INF: FPGA: Recv ZSGSRD 30683
17-03-18 06:22:17.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.394 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.394 -07 000000382 INF: FPGA: Recv ZSGSRD 30691
17-03-18 06:22:17.404 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:17.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30691
17-03-18 06:22:17.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.414 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:17.414 -07 000000382 INF: FPGA: Recv ZPIEZORD 26443
17-03-18 06:22:17.424 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.3 V.
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30688 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30690 (-136.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30680 (-136.6 uncal um), Max = 30695 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30688, posNoise = 7, negNoise = 8
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: After move to -0.137464, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: Settle wait time = 1592 ms, measure time = 106 ms (allowed 150 ms), total time = 1698 ms
17-03-18 06:22:17.424 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:17.474 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3306 ms
17-03-18 06:22:17.474 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:17.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:17.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:17.474 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:17.474 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:17.474 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:17.474 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:17.474 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:17.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:17.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:17.484 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:17.494 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:22:17.494 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:22:17.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:17.544 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:17.844 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:17.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:17.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:17.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:22:17.874 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:17.884 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:17.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:22:17.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:22:17.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:17.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:17.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:22:17.984 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:17.984 -07 000000629 INF: Autofocus start
17-03-18 06:22:17.984 -07 000000629 INF: MeasureProfile start
17-03-18 06:22:17.984 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:17.994 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:17.994 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:17.994 -07 000000629 INF: MeasureProfile done
17-03-18 06:22:17.994 -07 000000629 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:22:17.994 -07 000000629 INF: Autofocus finished
17-03-18 06:22:18.194 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:18.194 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:18.194 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137469574217495. ----------
17-03-18 06:22:18.194 -07 000000610 INF: Cycle	148	Tile	7	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:18.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28506, sync = True, waitForSettling = True)
17-03-18 06:22:18.204 -07 000000610 INF: Z Motor: Moving to -0.130492 mm, started at -0.137470 mm, distance = 6.98 um
17-03-18 06:22:18.204 -07 000000610 INF: FPGA: Xmit ZDACW 28506\n [Z Motor]
17-03-18 06:22:18.204 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:22:18.214 -07 000000610 INF: FPGA: 'ZDACW 28506' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:18.214 -07 000000474 INF: FPGA: Recv ZDACR 28506
17-03-18 06:22:18.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:18.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.374 -07 000000382 INF: FPGA: Recv ZSGSRD 29606
17-03-18 06:22:18.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:18.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.384 -07 000000629 INF: FPGA: Recv ZSGSRD 29606
17-03-18 06:22:18.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:22:18.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.404 -07 000000629 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:22:18.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.414 -07 000000585 INF: FPGA: Recv ZSGSRD 29600
17-03-18 06:22:18.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.424 -07 000000438 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:22:18.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.434 -07 000000585 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:22:18.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.444 -07 000000438 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:22:18.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.454 -07 000000382 INF: FPGA: Recv ZSGSRD 29609
17-03-18 06:22:18.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:18.464 -07 000000438 INF: FPGA: Recv ZSGSRD 29595
17-03-18 06:22:18.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:18.474 -07 000000629 INF: FPGA: Recv ZPIEZORD 24998
17-03-18 06:22:18.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:18.484 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -10.1 V.
17-03-18 06:22:18.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29602 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29602 (-129.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29595 (-129.7 uncal um), Max = 29609 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:22:18.484 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29602, posNoise = 7, negNoise = 7
17-03-18 06:22:18.484 -07 000000610 INF: Z Motor: After move to -0.130492, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:18.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:22:18.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:18.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:18.484 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:18.484 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:18.484 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:18.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:18.484 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:18.484 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:18.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:18.484 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:18.484 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:18.484 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:18.494 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:18.494 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:18.494 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:22:18.494 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:18.504 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:22:18.504 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:22:18.504 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:22:18.504 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:22:18.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28683 150\n [Camera]
17-03-18 06:22:18.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:19.164 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:19.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:19.164 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:19.164 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:19.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:19.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:19.174 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:19.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) start.
17-03-18 06:22:19.174 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:19.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2321533088, 0x0, 418435064) start.
17-03-18 06:22:19.564 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:22:19.564 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:22:19.564 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:19.574 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:19.574 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:22:19.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2321533088, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:22:19.574 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:22:19.574 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:19.574 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:19.584 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:22:19.584 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28683 842
17-03-18 06:22:19.584 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:19.724 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:19.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:19.734 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:19.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:19.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:19.734 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:19.854 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:19.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2356955352, 0x0, 391868352) start.
17-03-18 06:22:19.854 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:19.854 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:22:20.234 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:22:20.234 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:22:20.234 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:20.234 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2356955352, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:22:20.234 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:22:20.234 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:20.234 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:22:20.234 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:22:20.234 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 06:22:20.244 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 06:22:20.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:20.244 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:20.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28683 150' command took 2 ms to send, 1728 ms to get response, and 1738 ms overall
17-03-18 06:22:20.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:20.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130492879831543. ------
17-03-18 06:22:20.254 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:20.254 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13721 mm
17-03-18 06:22:20.254 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:20.814 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:22:20.814 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:22:20.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:21.814 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:21.814 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:22:21.814 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1550 ms to get response, and 1555 ms overall
17-03-18 06:22:21.814 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 06:22:21.814 -07 000000461 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:21.814 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:21.814 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29973, sync = True, waitForSettling = False)
17-03-18 06:22:21.814 -07 000000502 INF: Z Motor: Moving to -0.137208 mm, started at -0.130493 mm, distance = -6.71 um
17-03-18 06:22:21.814 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:21.814 -07 000000461 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:22:21.824 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:21.834 -07 000000502 INF: FPGA: Xmit ZDACW 29973\n [Z Motor]
17-03-18 06:22:22.814 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:22:22.814 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:22.814 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:22.814 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:22:22.814 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 980 ms to get response, and 994 ms overall
17-03-18 06:22:22.814 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 06:22:22.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:22.814 -07 000000502 INF: FPGA: 'ZDACW 29973' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 06:22:22.814 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.014009,
17-03-18 06:22:22.834 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:22.864 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:23.814 -07 000000479 INF: FPGA: Recv ZDACR 29973
17-03-18 06:22:23.814 -07 000000479 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:22:23.814 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 940 ms to get response, and 944 ms overall
17-03-18 06:22:23.814 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:23.814 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:22:23.814 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 994 ms, distance = 0.845 mm, average velocity = 0.850 mm/sec
17-03-18 06:22:23.814 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 06:22:23.814 -07 000000502 INF: Z Motor: MoveAbsStepped took 1999 ms (did NOT wait for settling yet))
17-03-18 06:22:24.764 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:24.764 -07 000000479 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:22:24.774 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:24.774 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:24.804 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:24.804 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:24.804 -07 000000461 INF: Y Motor: Moved to 65.7134 after 3995 ms (table move)
17-03-18 06:22:24.814 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137208 mm (DAC = 29973)
17-03-18 06:22:24.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30649
17-03-18 06:22:24.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:24.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.824 -07 000000467 INF: FPGA: Recv ZSGSRD 30644
17-03-18 06:22:24.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.834 -07 000000461 INF: FPGA: Recv ZSGSRD 30648
17-03-18 06:22:24.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.844 -07 000000474 INF: FPGA: Recv ZSGSRD 30650
17-03-18 06:22:24.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.854 -07 000000479 INF: FPGA: Recv ZSGSRD 30645
17-03-18 06:22:24.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.864 -07 000000467 INF: FPGA: Recv ZSGSRD 30651
17-03-18 06:22:24.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.874 -07 000000462 INF: FPGA: Recv ZSGSRD 30647
17-03-18 06:22:24.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.884 -07 000000591 INF: FPGA: Recv ZSGSRD 30647
17-03-18 06:22:24.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.894 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.894 -07 000000462 INF: FPGA: Recv ZSGSRD 30646
17-03-18 06:22:24.904 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.904 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:24.904 -07 000000467 INF: FPGA: Recv ZSGSRD 30652
17-03-18 06:22:24.914 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.914 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:24.914 -07 000000502 INF: FPGA: Recv ZPIEZORD 26419
17-03-18 06:22:24.924 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.3 V.
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30648 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30648 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30644 (-136.4 uncal um), Max = 30652 (-136.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30648, posNoise = 4, negNoise = 4
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: After move to -0.137208, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: Settle wait time = 2999 ms, measure time = 109 ms (allowed 150 ms), total time = 3108 ms
17-03-18 06:22:24.924 -07 000000608 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:24.974 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-18 06:22:24.974 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:24.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:24.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:24.974 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:24.974 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:24.974 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:24.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:24.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:24.974 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:24.984 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:24.984 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:24.994 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:22:24.994 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:22:24.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:25.044 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:25.344 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:25.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:25.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:25.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:22:25.384 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:25.384 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:25.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 06:22:25.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:22:25.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:25.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:25.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:22:25.484 -07 000000462 INF: Autofocus start
17-03-18 06:22:25.484 -07 000000462 INF: MeasureProfile start
17-03-18 06:22:25.484 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:25.484 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:25.494 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:25.494 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:25.494 -07 000000462 INF: MeasureProfile done
17-03-18 06:22:25.494 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:22:25.494 -07 000000462 INF: Autofocus finished
17-03-18 06:22:25.694 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:25.694 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:25.694 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137212605731825. ----------
17-03-18 06:22:25.694 -07 000000610 INF: Cycle	148	Tile	8	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:25.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28497, sync = True, waitForSettling = True)
17-03-18 06:22:25.704 -07 000000610 INF: Z Motor: Moving to -0.130451 mm, started at -0.137213 mm, distance = 6.76 um
17-03-18 06:22:25.704 -07 000000610 INF: FPGA: Xmit ZDACW 28497\n [Z Motor]
17-03-18 06:22:25.704 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:22:25.714 -07 000000610 INF: FPGA: 'ZDACW 28497' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:25.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:25.714 -07 000000479 INF: FPGA: Recv ZDACR 28497
17-03-18 06:22:25.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.874 -07 000000479 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:22:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:22:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.894 -07 000000479 INF: FPGA: Recv ZSGSRD 29595
17-03-18 06:22:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29596
17-03-18 06:22:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.914 -07 000000467 INF: FPGA: Recv ZSGSRD 29594
17-03-18 06:22:25.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.924 -07 000000608 INF: FPGA: Recv ZSGSRD 29594
17-03-18 06:22:25.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.934 -07 000000579 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:22:25.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.944 -07 000000608 INF: FPGA: Recv ZSGSRD 29598
17-03-18 06:22:25.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.954 -07 000000608 INF: FPGA: Recv ZSGSRD 29602
17-03-18 06:22:25.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:25.964 -07 000000461 INF: FPGA: Recv ZSGSRD 29603
17-03-18 06:22:25.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:25.974 -07 000000579 INF: FPGA: Recv ZPIEZORD 25072
17-03-18 06:22:25.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:25.984 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.9 V.
17-03-18 06:22:25.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29598 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29597 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29594 (-129.7 uncal um), Max = 29603 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:22:25.984 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29598, posNoise = 5, negNoise = 4
17-03-18 06:22:25.984 -07 000000610 INF: Z Motor: After move to -0.130451, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:25.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:22:25.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:25.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:25.984 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:25.984 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:25.984 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:25.994 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:25.994 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:25.994 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:25.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:25.994 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:25.994 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:25.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:25.994 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:22:25.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:22:25.994 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:25.994 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:26.014 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:22:26.014 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:22:26.014 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 06:22:26.014 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:22:26.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28674 150\n [Camera]
17-03-18 06:22:26.214 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:26.674 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:26.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:26.674 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:26.674 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:26.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:26.674 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:26.674 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:26.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:22:26.674 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:26.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2290516128, 0x0, 391868352) start.
17-03-18 06:22:26.854 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:26.864 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28674 843
17-03-18 06:22:27.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2290516128, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:22:27.054 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:22:27.054 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:27.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:22:27.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:22:27.054 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:27.054 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:27.054 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:22:27.054 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:27.064 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:22:27.104 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:27.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:27.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:27.234 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:27.234 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:27.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:27.234 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:27.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:22:27.244 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:27.244 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:27.244 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:22:27.614 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:22:27.614 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:22:27.614 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:27.624 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:22:27.624 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:22:27.624 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:27.624 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:27.624 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:27.624 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:22:27.634 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:22:27.634 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:27.634 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:27.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28674 150' command took 2 ms to send, 1616 ms to get response, and 1620 ms overall
17-03-18 06:22:27.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:27.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130467182982976. ------
17-03-18 06:22:27.764 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:27.764 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13682 mm
17-03-18 06:22:27.764 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:28.314 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:22:28.314 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:22:28.314 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:29.314 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:29.314 -07 000000501 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:22:29.314 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 06:22:29.314 -07 000000438 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:29.314 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:29.314 -07 000000438 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:22:29.314 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1540 ms to get response, and 1543 ms overall
17-03-18 06:22:29.314 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:29.314 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29888, sync = True, waitForSettling = False)
17-03-18 06:22:29.314 -07 000000501 INF: Z Motor: Moving to -0.136818 mm, started at -0.130467 mm, distance = -6.35 um
17-03-18 06:22:29.324 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:29.334 -07 000000501 INF: FPGA: Xmit ZDACW 29888\n [Z Motor]
17-03-18 06:22:30.314 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:22:30.314 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:30.314 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-18 06:22:30.314 -07 000000501 INF: FPGA: 'ZDACW 29888' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 06:22:30.314 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:22:30.314 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 992 ms to get response, and 1000 ms overall
17-03-18 06:22:30.314 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:30.314 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.026244,
17-03-18 06:22:30.314 -07 000000592 INF: FPGA: Recv ZDACR 29888
17-03-18 06:22:30.324 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 8 ms overall
17-03-18 06:22:30.324 -07 000000501 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 06:22:30.374 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:30.374 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:22:30.384 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:30.384 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:30.384 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:22:30.384 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.839 mm, average velocity = 0.839 mm/sec
17-03-18 06:22:31.334 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:31.334 -07 000000629 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:22:31.344 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.344 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:31.374 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:31.374 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:31.374 -07 000000438 INF: Y Motor: Moved to 66.5386 after 3062 ms (table move)
17-03-18 06:22:31.374 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136818 mm (DAC = 29888)
17-03-18 06:22:31.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.374 -07 000000629 INF: FPGA: Recv ZSGSRD 30587
17-03-18 06:22:31.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:22:31.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.384 -07 000000569 INF: FPGA: Recv ZSGSRD 30589
17-03-18 06:22:31.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.394 -07 000000501 INF: FPGA: Recv ZSGSRD 30583
17-03-18 06:22:31.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30585
17-03-18 06:22:31.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.414 -07 000000501 INF: FPGA: Recv ZSGSRD 30587
17-03-18 06:22:31.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.424 -07 000000611 INF: FPGA: Recv ZSGSRD 30586
17-03-18 06:22:31.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:22:31.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.444 -07 000000569 INF: FPGA: Recv ZSGSRD 30588
17-03-18 06:22:31.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.454 -07 000000501 INF: FPGA: Recv ZSGSRD 30587
17-03-18 06:22:31.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:31.464 -07 000000611 INF: FPGA: Recv ZSGSRD 30582
17-03-18 06:22:31.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.474 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:31.474 -07 000000501 INF: FPGA: Recv ZPIEZORD 26381
17-03-18 06:22:31.484 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.2 V.
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30587 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30587 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30582 (-136.0 uncal um), Max = 30597 (-136.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30587, posNoise = 10, negNoise = 5
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: After move to -0.136818, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: Settle wait time = 2064 ms, measure time = 104 ms (allowed 150 ms), total time = 2168 ms
17-03-18 06:22:31.484 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:31.534 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3762 ms
17-03-18 06:22:31.534 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:31.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:31.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:31.534 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:31.534 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:31.534 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:31.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:31.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:31.534 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:31.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:31.544 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:31.554 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:22:31.554 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:22:31.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:31.594 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:31.854 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:31.894 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:31.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:31.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:31.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:22:31.934 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:31.934 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:31.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:22:32.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:22:32.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:32.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:32.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:22:32.134 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:32.134 -07 000000591 INF: Autofocus start
17-03-18 06:22:32.134 -07 000000591 INF: MeasureProfile start
17-03-18 06:22:32.134 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:32.144 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:32.144 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:32.144 -07 000000591 INF: MeasureProfile done
17-03-18 06:22:32.144 -07 000000591 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:22:32.144 -07 000000591 INF: Autofocus finished
17-03-18 06:22:32.344 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:32.344 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:32.344 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136820728791177. ----------
17-03-18 06:22:32.344 -07 000000610 INF: Cycle	148	Tile	9	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:32.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28396, sync = True, waitForSettling = True)
17-03-18 06:22:32.354 -07 000000610 INF: Z Motor: Moving to -0.129989 mm, started at -0.136821 mm, distance = 6.83 um
17-03-18 06:22:32.354 -07 000000610 INF: FPGA: Xmit ZDACW 28396\n [Z Motor]
17-03-18 06:22:32.354 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:22:32.364 -07 000000610 INF: FPGA: 'ZDACW 28396' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:32.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:32.364 -07 000000480 INF: FPGA: Recv ZDACR 28396
17-03-18 06:22:32.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:22:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.534 -07 000000629 INF: FPGA: Recv ZSGSRD 29527
17-03-18 06:22:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.544 -07 000000569 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:22:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.554 -07 000000438 INF: FPGA: Recv ZSGSRD 29527
17-03-18 06:22:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.564 -07 000000501 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:22:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.574 -07 000000447 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:22:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.584 -07 000000569 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:22:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.594 -07 000000629 INF: FPGA: Recv ZSGSRD 29526
17-03-18 06:22:32.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.604 -07 000000447 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:22:32.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:32.614 -07 000000501 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:22:32.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:32.624 -07 000000480 INF: FPGA: Recv ZPIEZORD 24968
17-03-18 06:22:32.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:32.634 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 06:22:32.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29525 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29522 (-129.2 uncal um), Max = 29528 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:22:32.634 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29525, posNoise = 3, negNoise = 3
17-03-18 06:22:32.634 -07 000000610 INF: Z Motor: After move to -0.129989, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:32.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:22:32.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:32.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:32.634 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:32.634 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:32.634 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:32.634 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:32.634 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:32.634 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:32.634 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:32.634 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:32.634 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:32.634 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:32.644 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:22:32.644 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:32.644 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:32.644 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:32.654 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:22:32.654 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:22:32.654 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:22:32.654 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:22:32.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28572 150\n [Camera]
17-03-18 06:22:32.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:33.314 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:33.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:33.314 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:33.324 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:33.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:22:33.714 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:22:33.714 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:22:33.714 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:33.714 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:22:33.714 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:22:33.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:33.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28572 842
17-03-18 06:22:33.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:33.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:33.724 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:33.734 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:33.734 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:22:34.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:22:34.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:22:34.104 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:34.104 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:22:34.114 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:22:35.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:35.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:35.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:35.024 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:35.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28572 150' command took 2 ms to send, 2350 ms to get response, and 2361 ms overall
17-03-18 06:22:35.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:35.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:35.024 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:35.024 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:35.024 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:22:35.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:35.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.129998215496627. ------
17-03-18 06:22:35.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:22:35.404 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:22:35.404 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:35.414 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:35.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:22:35.444 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:35.454 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:35.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:22:35.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:22:35.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:22:35.844 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:35.854 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:35.854 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:22:35.864 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:36.614 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:36.614 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 740 ms to get response, and 744 ms overall
17-03-18 06:22:36.724 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:36.734 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13670 mm
17-03-18 06:22:36.734 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:37.144 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:37.144 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:37.144 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 400 ms to get response, and 410 ms overall
17-03-18 06:22:37.144 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:37.144 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:22:37.144 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:22:37.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:37.144 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 3.997626,
17-03-18 06:22:37.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29863, sync = True, waitForSettling = False)
17-03-18 06:22:37.144 -07 000000461 INF: Z Motor: Moving to -0.136704 mm, started at -0.129998 mm, distance = -6.71 um
17-03-18 06:22:37.164 -07 000000461 INF: FPGA: Xmit ZDACW 29863\n [Z Motor]
17-03-18 06:22:37.684 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:22:37.684 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:22:37.684 -07 000000461 INF: FPGA: 'ZDACW 29863' command took 0 ms to send, 513 ms to get response, and 537 ms overall
17-03-18 06:22:37.684 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 533 ms to get response, and 540 ms overall
17-03-18 06:22:37.684 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:37.684 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:37.684 -07 000000608 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:22:37.694 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:37.714 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:37.714 -07 000000462 INF: FPGA: Recv ZDACR 29863
17-03-18 06:22:37.724 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 06:22:37.724 -07 000000461 INF: Z Motor: MoveAbsStepped took 574 ms (did NOT wait for settling yet))
17-03-18 06:22:38.064 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:22:38.064 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-18 06:22:38.124 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:38.124 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:22:38.134 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:38.134 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:38.134 -07 000000608 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:22:38.134 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.192 mm/sec
17-03-18 06:22:39.084 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:39.084 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:22:39.094 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:39.094 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:39.124 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:39.124 -07 000000608 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:39.124 -07 000000608 INF: Y Motor: Moved to 67.3716 after 1979 ms (table move)
17-03-18 06:22:39.124 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136704 mm (DAC = 29863)
17-03-18 06:22:39.124 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.124 -07 000000461 INF: FPGA: Recv ZSGSRD 30575
17-03-18 06:22:39.134 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:39.134 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30574
17-03-18 06:22:39.144 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.144 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.144 -07 000000462 INF: FPGA: Recv ZSGSRD 30563
17-03-18 06:22:39.154 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.154 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.154 -07 000000461 INF: FPGA: Recv ZSGSRD 30562
17-03-18 06:22:39.164 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30566
17-03-18 06:22:39.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.174 -07 000000474 INF: FPGA: Recv ZSGSRD 30566
17-03-18 06:22:39.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.184 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.184 -07 000000502 INF: FPGA: Recv ZSGSRD 30574
17-03-18 06:22:39.194 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.194 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30569
17-03-18 06:22:39.204 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.204 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.204 -07 000000462 INF: FPGA: Recv ZSGSRD 30575
17-03-18 06:22:39.214 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.214 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:39.214 -07 000000608 INF: FPGA: Recv ZSGSRD 30571
17-03-18 06:22:39.224 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.224 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:39.224 -07 000000467 INF: FPGA: Recv ZPIEZORD 26359
17-03-18 06:22:39.234 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.3 V.
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30570 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30570 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30562 (-135.9 uncal um), Max = 30575 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30570, posNoise = 5, negNoise = 8
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: After move to -0.136704, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: Settle wait time = 1979 ms, measure time = 105 ms (allowed 150 ms), total time = 2084 ms
17-03-18 06:22:39.234 -07 000000579 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:39.284 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2549 ms
17-03-18 06:22:39.284 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:39.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:39.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:39.284 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:39.284 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:39.284 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:39.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:39.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:22:39.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:39.294 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:39.294 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:39.304 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:22:39.304 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:22:39.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:39.354 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:39.654 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:39.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:39.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:39.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:22:39.694 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:39.694 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:39.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 06:22:39.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:22:39.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:39.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:39.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:22:39.794 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:39.794 -07 000000579 INF: Autofocus start
17-03-18 06:22:39.794 -07 000000579 INF: MeasureProfile start
17-03-18 06:22:39.794 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:39.804 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:39.804 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:39.804 -07 000000579 INF: MeasureProfile done
17-03-18 06:22:39.804 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:22:39.804 -07 000000579 INF: Autofocus finished
17-03-18 06:22:40.004 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:40.004 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:22:40.004 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136711517184767. ----------
17-03-18 06:22:40.004 -07 000000610 INF: Cycle	148	Tile	10	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:40.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28370, sync = True, waitForSettling = True)
17-03-18 06:22:40.014 -07 000000610 INF: Z Motor: Moving to -0.129870 mm, started at -0.136712 mm, distance = 6.84 um
17-03-18 06:22:40.014 -07 000000610 INF: FPGA: Xmit ZDACW 28370\n [Z Motor]
17-03-18 06:22:40.014 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:22:40.024 -07 000000610 INF: FPGA: 'ZDACW 28370' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:40.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:40.024 -07 000000467 INF: FPGA: Recv ZDACR 28370
17-03-18 06:22:40.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:40.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.184 -07 000000501 INF: FPGA: Recv ZSGSRD 29504
17-03-18 06:22:40.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:22:40.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.194 -07 000000592 INF: FPGA: Recv ZSGSRD 29510
17-03-18 06:22:40.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:40.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.204 -07 000000480 INF: FPGA: Recv ZSGSRD 29502
17-03-18 06:22:40.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.214 -07 000000462 INF: FPGA: Recv ZSGSRD 29502
17-03-18 06:22:40.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.224 -07 000000474 INF: FPGA: Recv ZSGSRD 29510
17-03-18 06:22:40.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.234 -07 000000579 INF: FPGA: Recv ZSGSRD 29502
17-03-18 06:22:40.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.244 -07 000000474 INF: FPGA: Recv ZSGSRD 29506
17-03-18 06:22:40.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.254 -07 000000579 INF: FPGA: Recv ZSGSRD 29504
17-03-18 06:22:40.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.264 -07 000000579 INF: FPGA: Recv ZSGSRD 29505
17-03-18 06:22:40.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:40.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:22:40.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:40.284 -07 000000585 INF: FPGA: Recv ZPIEZORD 24954
17-03-18 06:22:40.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:40.294 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -10.0 V.
17-03-18 06:22:40.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29505 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29504 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29502 (-129.1 uncal um), Max = 29510 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:22:40.294 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29505, posNoise = 5, negNoise = 3
17-03-18 06:22:40.294 -07 000000610 INF: Z Motor: After move to -0.129870, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:40.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:22:40.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:40.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:40.294 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:40.294 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:40.294 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:40.294 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:40.294 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:40.294 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:40.294 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:40.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:40.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:40.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:40.294 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:40.294 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:40.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:40.304 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:40.314 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:22:40.314 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:22:40.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:22:40.314 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:22:40.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28547 150\n [Camera]
17-03-18 06:22:40.524 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:40.974 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:40.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:40.974 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:40.984 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:40.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:40.984 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:40.984 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:40.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:22:40.984 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:40.984 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:22:41.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28547 845
17-03-18 06:22:41.314 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:41.354 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:22:41.354 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:22:41.354 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:41.354 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:22:41.354 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:22:41.354 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:41.364 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:41.364 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:22:41.364 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:41.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:22:41.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:41.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:41.544 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:41.544 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:41.544 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:22:41.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:41.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:41.544 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:41.544 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:41.544 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:22:41.734 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:22:41.734 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:41.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28547 150' command took 2 ms to send, 1404 ms to get response, and 1414 ms overall
17-03-18 06:22:41.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:41.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.129869731253792. ------
17-03-18 06:22:41.744 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:41.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:22:41.924 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:22:41.924 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:41.924 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:22:41.924 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:22:41.924 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:41.924 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:41.924 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:22:41.924 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:22:41.934 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:22:41.944 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13626 mm
17-03-18 06:22:41.944 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:41.944 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:41.944 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:41.944 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:22:41.944 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:41.944 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:41.944 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:22:41.944 -07 000000579 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:22:41.954 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:42.814 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29767, sync = True, waitForSettling = False)
17-03-18 06:22:42.814 -07 000000591 INF: Z Motor: Moving to -0.136265 mm, started at -0.129870 mm, distance = -6.39 um
17-03-18 06:22:42.814 -07 000000591 INF: FPGA: Xmit ZDACW 29767\n [Z Motor]
17-03-18 06:22:43.814 -07 000000629 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:22:43.814 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:43.814 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:22:43.814 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1860 ms to get response, and 1865 ms overall
17-03-18 06:22:43.814 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1850 ms to get response, and 1864 ms overall
17-03-18 06:22:43.814 -07 000000579 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:43.814 -07 000000579 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:43.814 -07 000000579 INF: Y Motor: Moving 1346 steps-23
17-03-18 06:22:43.814 -07 000000591 INF: FPGA: 'ZDACW 29767' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-18 06:22:43.814 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:43.824 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:43.824 -07 000000585 INF: FPGA: Recv ZDACR 29767
17-03-18 06:22:43.834 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:22:43.834 -07 000000591 INF: Z Motor: MoveAbsStepped took 1018 ms (did NOT wait for settling yet))
17-03-18 06:22:44.124 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.014009,
17-03-18 06:22:44.184 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:22:44.194 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 06:22:44.244 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:44.244 -07 000000611 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:22:44.254 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:44.254 -07 000000579 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:44.254 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:22:44.254 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.225 mm/sec
17-03-18 06:22:45.204 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:45.204 -07 000000591 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:22:45.214 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:45.214 -07 000000579 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:45.244 -07 000000579 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:45.244 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:45.244 -07 000000579 INF: Y Motor: Moved to 68.2041 after 3297 ms (table move)
17-03-18 06:22:45.244 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136265 mm (DAC = 29767)
17-03-18 06:22:45.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.244 -07 000000585 INF: FPGA: Recv ZSGSRD 30503
17-03-18 06:22:45.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:22:45.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.254 -07 000000629 INF: FPGA: Recv ZSGSRD 30498
17-03-18 06:22:45.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.264 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30501
17-03-18 06:22:45.274 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.274 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.274 -07 000000629 INF: FPGA: Recv ZSGSRD 30506
17-03-18 06:22:45.284 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.284 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30499
17-03-18 06:22:45.294 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.294 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.294 -07 000000629 INF: FPGA: Recv ZSGSRD 30504
17-03-18 06:22:45.304 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.304 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.304 -07 000000611 INF: FPGA: Recv ZSGSRD 30505
17-03-18 06:22:45.314 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.314 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.314 -07 000000629 INF: FPGA: Recv ZSGSRD 30500
17-03-18 06:22:45.324 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.324 -07 000000438 INF: FPGA: Recv ZSGSRD 30499
17-03-18 06:22:45.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:45.334 -07 000000382 INF: FPGA: Recv ZSGSRD 30495
17-03-18 06:22:45.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.344 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:45.344 -07 000000611 INF: FPGA: Recv ZPIEZORD 26295
17-03-18 06:22:45.354 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.2 V.
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30501 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30500 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30495 (-135.4 uncal um), Max = 30506 (-135.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30501, posNoise = 5, negNoise = 6
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: After move to -0.136265, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: Settle wait time = 2434 ms, measure time = 104 ms (allowed 150 ms), total time = 2538 ms
17-03-18 06:22:45.354 -07 000000474 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:45.404 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3459 ms
17-03-18 06:22:45.404 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:45.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:45.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:45.404 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:45.404 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:45.404 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:45.404 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:45.404 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:45.404 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:45.414 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:45.414 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:45.424 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:22:45.424 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:22:45.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:45.474 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:45.774 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:45.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:45.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:45.884 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:45.884 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:45.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 456 ms to get response, and 458 ms overall
17-03-18 06:22:45.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:22:46.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:22:46.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:46.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:46.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 239 ms.
17-03-18 06:22:46.084 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:46.084 -07 000000479 INF: Autofocus start
17-03-18 06:22:46.084 -07 000000479 INF: MeasureProfile start
17-03-18 06:22:46.084 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:46.094 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:46.094 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:46.094 -07 000000479 INF: MeasureProfile done
17-03-18 06:22:46.094 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:22:46.094 -07 000000479 INF: Autofocus finished
17-03-18 06:22:46.294 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:46.294 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:46.294 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136268246546986. ----------
17-03-18 06:22:46.294 -07 000000610 INF: Cycle	148	Tile	11	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:46.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28291, sync = True, waitForSettling = True)
17-03-18 06:22:46.304 -07 000000610 INF: Z Motor: Moving to -0.129508 mm, started at -0.136268 mm, distance = 6.76 um
17-03-18 06:22:46.304 -07 000000610 INF: FPGA: Xmit ZDACW 28291\n [Z Motor]
17-03-18 06:22:46.304 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:22:46.314 -07 000000610 INF: FPGA: 'ZDACW 28291' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:46.314 -07 000000579 INF: FPGA: Recv ZDACR 28291
17-03-18 06:22:46.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:46.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:46.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29443
17-03-18 06:22:46.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:46.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.484 -07 000000382 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:22:46.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.494 -07 000000479 INF: FPGA: Recv ZSGSRD 29453
17-03-18 06:22:46.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.504 -07 000000479 INF: FPGA: Recv ZSGSRD 29449
17-03-18 06:22:46.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.514 -07 000000438 INF: FPGA: Recv ZSGSRD 29449
17-03-18 06:22:46.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.524 -07 000000629 INF: FPGA: Recv ZSGSRD 29453
17-03-18 06:22:46.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:22:46.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.544 -07 000000474 INF: FPGA: Recv ZSGSRD 29448
17-03-18 06:22:46.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.554 -07 000000585 INF: FPGA: Recv ZSGSRD 29444
17-03-18 06:22:46.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:46.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29449
17-03-18 06:22:46.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:46.574 -07 000000585 INF: FPGA: Recv ZPIEZORD 24896
17-03-18 06:22:46.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:46.584 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -10.0 V.
17-03-18 06:22:46.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29449 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29449 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29443 (-128.7 uncal um), Max = 29453 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:22:46.584 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29449, posNoise = 4, negNoise = 6
17-03-18 06:22:46.584 -07 000000610 INF: Z Motor: After move to -0.129508, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:46.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:22:46.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:46.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:46.584 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:46.584 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:46.584 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:46.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:46.584 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:46.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:46.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:46.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:46.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:46.584 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:46.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:46.584 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:46.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:22:46.594 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:46.594 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:22:46.594 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:22:46.594 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:22:46.594 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:22:46.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28468 150\n [Camera]
17-03-18 06:22:46.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:46.854 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:47.284 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:47.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:47.284 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:47.284 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:47.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:47.284 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:47.294 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:47.294 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:22:47.294 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:47.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:22:47.474 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28468 842
17-03-18 06:22:47.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:47.684 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:22:47.684 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:22:47.684 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:22:47.684 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:47.684 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:22:47.684 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:47.694 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:22:47.694 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:22:47.694 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:22:47.704 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:22:47.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:47.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:47.844 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:47.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:47.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:47.844 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:47.844 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:47.844 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:22:47.854 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:47.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:22:48.034 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:22:48.034 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:48.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28468 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-18 06:22:48.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:48.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129509975373853. ------
17-03-18 06:22:48.044 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:48.044 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13610 mm
17-03-18 06:22:48.044 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:48.054 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:48.054 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:22:48.054 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:48.054 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:22:48.054 -07 000000629 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:22:48.064 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:48.224 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:22:48.224 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:22:48.224 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:48.234 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:48.234 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:22:48.234 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:22:48.234 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:48.234 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:48.234 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:22:48.234 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:22:48.254 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29730, sync = True, waitForSettling = False)
17-03-18 06:22:48.254 -07 000000585 INF: Z Motor: Moving to -0.136095 mm, started at -0.129510 mm, distance = -6.59 um
17-03-18 06:22:48.254 -07 000000474 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:22:48.254 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:48.254 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 06:22:48.254 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 185 ms to get response, and 201 ms overall
17-03-18 06:22:48.254 -07 000000585 INF: FPGA: Xmit ZDACW 29730\n [Z Motor]
17-03-18 06:22:48.254 -07 000000629 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:48.264 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:22:48.264 -07 000000585 INF: FPGA: 'ZDACW 29730' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:22:48.264 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:48.264 -07 000000479 INF: FPGA: Recv ZDACR 29730
17-03-18 06:22:48.264 -07 000000629 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:48.264 -07 000000629 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:22:48.274 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:48.274 -07 000000585 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 06:22:48.274 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:48.644 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:22:48.644 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:22:48.704 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:48.704 -07 000000585 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:22:48.714 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:48.714 -07 000000629 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:48.714 -07 000000629 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:22:48.714 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-18 06:22:49.484 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.005817,
17-03-18 06:22:49.664 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:49.664 -07 000000479 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:22:49.674 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:49.674 -07 000000629 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:49.704 -07 000000629 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:49.704 -07 000000629 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:49.704 -07 000000629 INF: Y Motor: Moved to 69.0264 after 1655 ms (table move)
17-03-18 06:22:49.714 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136095 mm (DAC = 29730)
17-03-18 06:22:49.714 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.714 -07 000000585 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:22:49.724 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:49.724 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.724 -07 000000467 INF: FPGA: Recv ZSGSRD 30473
17-03-18 06:22:49.734 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.734 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.734 -07 000000461 INF: FPGA: Recv ZSGSRD 30466
17-03-18 06:22:49.744 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.744 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.744 -07 000000479 INF: FPGA: Recv ZSGSRD 30463
17-03-18 06:22:49.754 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.754 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.754 -07 000000585 INF: FPGA: Recv ZSGSRD 30479
17-03-18 06:22:49.764 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.764 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.764 -07 000000474 INF: FPGA: Recv ZSGSRD 30479
17-03-18 06:22:49.774 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.774 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.774 -07 000000502 INF: FPGA: Recv ZSGSRD 30477
17-03-18 06:22:49.784 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.784 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.784 -07 000000474 INF: FPGA: Recv ZSGSRD 30476
17-03-18 06:22:49.794 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.814 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30469
17-03-18 06:22:49.824 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:22:49.824 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:49.824 -07 000000479 INF: FPGA: Recv ZSGSRD 30472
17-03-18 06:22:49.834 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:49.854 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:49.854 -07 000000629 INF: FPGA: Recv ZPIEZORD 26276
17-03-18 06:22:49.864 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.2 V.
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30473 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30474 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30463 (-135.2 uncal um), Max = 30479 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30473, posNoise = 6, negNoise = 10
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: After move to -0.136095, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: Settle wait time = 1458 ms, measure time = 147 ms (allowed 150 ms), total time = 1605 ms
17-03-18 06:22:49.864 -07 000000611 INF: Z Motor: Waiting extra 3 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:49.874 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1821 ms
17-03-18 06:22:49.874 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:49.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:49.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:49.874 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:49.874 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:49.874 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:49.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:49.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:49.874 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:49.884 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:49.884 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:49.894 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:22:49.894 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:22:49.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:49.944 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:50.234 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:50.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:50.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:50.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 583729424, 0x0, 559484976) start.
17-03-18 06:22:50.274 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:50.284 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:50.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 06:22:50.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 583729424, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:22:50.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:50.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:22:50.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:22:50.384 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:50.384 -07 000000585 INF: Autofocus start
17-03-18 06:22:50.384 -07 000000585 INF: MeasureProfile start
17-03-18 06:22:50.384 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:50.394 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:50.394 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:50.394 -07 000000585 INF: MeasureProfile done
17-03-18 06:22:50.394 -07 000000585 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:22:50.394 -07 000000585 INF: Autofocus finished
17-03-18 06:22:50.594 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:50.594 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:22:50.594 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136088368607017. ----------
17-03-18 06:22:50.604 -07 000000610 INF: Cycle	148	Tile	12	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:50.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28254, sync = True, waitForSettling = True)
17-03-18 06:22:50.604 -07 000000610 INF: Z Motor: Moving to -0.129339 mm, started at -0.136088 mm, distance = 6.75 um
17-03-18 06:22:50.604 -07 000000610 INF: FPGA: Xmit ZDACW 28254\n [Z Motor]
17-03-18 06:22:50.604 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:22:50.614 -07 000000610 INF: FPGA: 'ZDACW 28254' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:22:50.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:50.614 -07 000000585 INF: FPGA: Recv ZDACR 28254
17-03-18 06:22:50.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:50.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.774 -07 000000569 INF: FPGA: Recv ZSGSRD 29429
17-03-18 06:22:50.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:50.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.784 -07 000000474 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:22:50.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.794 -07 000000461 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:22:50.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.804 -07 000000585 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:22:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.814 -07 000000611 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:22:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.824 -07 000000585 INF: FPGA: Recv ZSGSRD 29424
17-03-18 06:22:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.834 -07 000000611 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:22:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.844 -07 000000585 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:22:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.854 -07 000000611 INF: FPGA: Recv ZSGSRD 29424
17-03-18 06:22:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:50.864 -07 000000467 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:22:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:50.874 -07 000000474 INF: FPGA: Recv ZPIEZORD 24874
17-03-18 06:22:50.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:50.884 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -10.0 V.
17-03-18 06:22:50.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29423 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29423 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29422 (-128.6 uncal um), Max = 29429 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 06:22:50.884 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29423, posNoise = 6, negNoise = 1
17-03-18 06:22:50.884 -07 000000610 INF: Z Motor: After move to -0.129339, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:50.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:22:50.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:50.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:50.884 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:50.884 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:50.884 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:50.884 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:50.884 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:50.884 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:50.884 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:50.884 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:50.884 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:50.884 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:50.894 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:50.894 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:50.894 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:50.894 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:50.904 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:22:50.904 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:22:50.904 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:22:50.904 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:22:50.904 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28431 150\n [Camera]
17-03-18 06:22:51.104 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:51.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:51.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:51.564 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:51.564 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:51.564 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:22:51.564 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:51.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:51.574 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:51.684 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:51.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:22:51.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28431 842
17-03-18 06:22:51.854 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:51.904 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:51.964 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:22:51.964 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:22:51.964 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:51.964 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:22:51.964 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:22:52.084 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:22:52.084 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:22:52.084 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:52.084 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:22:52.094 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 06:22:52.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:52.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:52.134 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:52.134 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:52.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:52.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:52.134 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:52.134 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:22:52.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:52.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:22:52.324 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:22:52.324 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:52.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28431 150' command took 2 ms to send, 1401 ms to get response, and 1411 ms overall
17-03-18 06:22:52.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:52.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129342945858168. ------
17-03-18 06:22:52.324 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:52.324 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13527 mm
17-03-18 06:22:52.324 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:52.324 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:52.334 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:22:52.334 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:52.334 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:22:52.334 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:22:52.344 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:52.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:22:52.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:22:52.534 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:52.534 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:52.534 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:22:52.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:22:52.534 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:22:52.534 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:52.544 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:52.544 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29549, sync = True, waitForSettling = False)
17-03-18 06:22:52.544 -07 000000479 INF: Z Motor: Moving to -0.135267 mm, started at -0.129343 mm, distance = -5.92 um
17-03-18 06:22:52.544 -07 000000479 INF: FPGA: Xmit ZDACW 29549\n [Z Motor]
17-03-18 06:22:52.544 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:22:52.554 -07 000000461 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:22:52.554 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:52.554 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:22:52.554 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 228 ms overall
17-03-18 06:22:52.554 -07 000000479 INF: FPGA: 'ZDACW 29549' command took 0 ms to send, 9 ms to get response, and 10 ms overall
17-03-18 06:22:52.554 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 219 ms to get response, and 229 ms overall
17-03-18 06:22:52.554 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:52.564 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:52.564 -07 000000467 INF: FPGA: Recv ZDACR 29549
17-03-18 06:22:52.564 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:52.564 -07 000000569 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:22:52.574 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:52.574 -07 000000479 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:22:52.574 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:52.944 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:22:52.944 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:22:52.994 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:53.004 -07 000000461 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:22:53.004 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:22:53.004 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:53.004 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:22:53.004 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-18 06:22:53.954 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:53.954 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:22:53.964 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:53.964 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:53.994 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:53.994 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:53.994 -07 000000569 INF: Y Motor: Moved to 69.8628 after 1661 ms (table move)
17-03-18 06:22:53.994 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135267 mm (DAC = 29549)
17-03-18 06:22:53.994 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:53.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30355
17-03-18 06:22:54.004 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:22:54.004 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30356
17-03-18 06:22:54.014 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.014 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30344
17-03-18 06:22:54.024 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.024 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.024 -07 000000479 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:22:54.034 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.034 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30351
17-03-18 06:22:54.044 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.044 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.044 -07 000000461 INF: FPGA: Recv ZSGSRD 30350
17-03-18 06:22:54.054 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.054 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.054 -07 000000467 INF: FPGA: Recv ZSGSRD 30349
17-03-18 06:22:54.064 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.064 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30347
17-03-18 06:22:54.074 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.074 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.074 -07 000000479 INF: FPGA: Recv ZSGSRD 30350
17-03-18 06:22:54.084 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.084 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:54.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30350
17-03-18 06:22:54.094 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.094 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:54.094 -07 000000467 INF: FPGA: Recv ZPIEZORD 26106
17-03-18 06:22:54.104 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.3 V.
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30349 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30350 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30342 (-134.5 uncal um), Max = 30356 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30349, posNoise = 7, negNoise = 7
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: After move to -0.135267, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:22:54.104 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:54.154 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1823 ms
17-03-18 06:22:54.154 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:54.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:54.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:54.154 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:54.154 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:54.154 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:54.154 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:54.154 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:54.154 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:54.154 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:54.154 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:54.174 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:22:54.174 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:22:54.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:54.224 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:54.524 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:54.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:54.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:54.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 06:22:54.554 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:54.564 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:54.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:22:54.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:22:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:22:54.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:22:54.664 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:54.664 -07 000000480 INF: Autofocus start
17-03-18 06:22:54.664 -07 000000480 INF: MeasureProfile start
17-03-18 06:22:54.664 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:54.674 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:54.674 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:54.674 -07 000000480 INF: MeasureProfile done
17-03-18 06:22:54.674 -07 000000480 INF: X=128  Z correction [um]=0.5917814
17-03-18 06:22:54.674 -07 000000480 INF: Autofocus finished
17-03-18 06:22:54.854 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.039839,
17-03-18 06:22:54.884 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:54.884 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 210 ms overall
17-03-18 06:22:54.884 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135291766301438. ----------
17-03-18 06:22:54.884 -07 000000610 INF: Cycle	148	Tile	13	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:54.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28191, sync = True, waitForSettling = True)
17-03-18 06:22:54.884 -07 000000610 INF: Z Motor: Moving to -0.129050 mm, started at -0.135292 mm, distance = 6.24 um
17-03-18 06:22:54.904 -07 000000610 INF: FPGA: Xmit ZDACW 28191\n [Z Motor]
17-03-18 06:22:54.904 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:22:54.914 -07 000000610 INF: FPGA: 'ZDACW 28191' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:22:54.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:54.914 -07 000000611 INF: FPGA: Recv ZDACR 28191
17-03-18 06:22:54.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:54.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.074 -07 000000461 INF: FPGA: Recv ZSGSRD 29377
17-03-18 06:22:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.084 -07 000000592 INF: FPGA: Recv ZSGSRD 29380
17-03-18 06:22:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:22:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.104 -07 000000611 INF: FPGA: Recv ZSGSRD 29377
17-03-18 06:22:55.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.114 -07 000000479 INF: FPGA: Recv ZSGSRD 29382
17-03-18 06:22:55.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.124 -07 000000569 INF: FPGA: Recv ZSGSRD 29377
17-03-18 06:22:55.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.134 -07 000000467 INF: FPGA: Recv ZSGSRD 29379
17-03-18 06:22:55.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.144 -07 000000611 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:22:55.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.154 -07 000000461 INF: FPGA: Recv ZSGSRD 29371
17-03-18 06:22:55.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:55.164 -07 000000608 INF: FPGA: Recv ZSGSRD 29376
17-03-18 06:22:55.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:55.174 -07 000000461 INF: FPGA: Recv ZPIEZORD 24823
17-03-18 06:22:55.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:55.184 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -10.0 V.
17-03-18 06:22:55.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29378 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29378 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29371 (-128.2 uncal um), Max = 29382 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:22:55.184 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29378, posNoise = 4, negNoise = 7
17-03-18 06:22:55.184 -07 000000610 INF: Z Motor: After move to -0.129050, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:55.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 293 ms)
17-03-18 06:22:55.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:55.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:55.184 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:55.184 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:55.184 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:55.184 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:55.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:55.184 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:55.184 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:22:55.184 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:55.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:22:55.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:55.194 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:22:55.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:55.194 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:55.194 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:55.204 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:22:55.204 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:55.204 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:22:55.204 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:55.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28368 150\n [Camera]
17-03-18 06:22:55.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:22:55.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:22:55.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:22:55.864 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:55.864 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:55.864 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:22:55.864 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:22:55.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:22:55.874 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:55.874 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:55.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:22:56.054 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28368 842
17-03-18 06:22:56.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:22:56.244 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:22:56.244 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:22:56.244 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:56.244 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:22:56.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:22:56.254 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:22:56.254 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:56.254 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:22:56.254 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:22:56.254 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:22:56.434 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:22:56.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:22:56.434 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:22:56.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:22:56.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:22:56.554 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:22:56.554 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:22:56.554 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:22:56.554 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:22:56.554 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:22:56.624 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:22:56.624 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:22:56.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28368 150' command took 2 ms to send, 1402 ms to get response, and 1416 ms overall
17-03-18 06:22:56.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:22:56.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129053856311788. ------
17-03-18 06:22:56.624 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:56.624 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13538 mm
17-03-18 06:22:56.624 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:22:56.634 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29573, sync = True, waitForSettling = False)
17-03-18 06:22:56.634 -07 000000461 INF: Z Motor: Moving to -0.135377 mm, started at -0.129054 mm, distance = -6.32 um
17-03-18 06:22:56.634 -07 000000461 INF: FPGA: Xmit ZDACW 29573\n [Z Motor]
17-03-18 06:22:56.634 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:22:56.634 -07 000000611 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:22:56.644 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:56.954 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:22:56.954 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:22:56.954 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:56.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:22:56.954 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:22:56.954 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:56.954 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:22:56.964 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 06:22:56.964 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:22:56.964 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:22:56.974 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:56.974 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:22:56.974 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:22:56.974 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:22:56.974 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 321 ms to get response, and 338 ms overall
17-03-18 06:22:56.974 -07 000000611 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:56.974 -07 000000611 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:22:56.974 -07 000000611 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:22:56.974 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:22:56.974 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:22:56.974 -07 000000461 INF: FPGA: 'ZDACW 29573' command took 0 ms to send, 331 ms to get response, and 339 ms overall
17-03-18 06:22:56.974 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 341 ms to get response, and 342 ms overall
17-03-18 06:22:56.984 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:22:56.994 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:56.994 -07 000000467 INF: FPGA: Recv ZDACR 29573
17-03-18 06:22:57.004 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:22:57.004 -07 000000461 INF: Z Motor: MoveAbsStepped took 368 ms (did NOT wait for settling yet))
17-03-18 06:22:57.184 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:22:57.184 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 06:22:57.354 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:22:57.354 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 06:22:57.404 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:57.404 -07 000000480 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:22:57.414 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:57.414 -07 000000611 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:57.414 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:22:57.414 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.216 mm/sec
17-03-18 06:22:58.364 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:22:58.364 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:22:58.374 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:58.374 -07 000000611 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:22:58.404 -07 000000611 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:22:58.404 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:22:58.404 -07 000000611 INF: Y Motor: Moved to 70.6880 after 1770 ms (table move)
17-03-18 06:22:58.404 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135377 mm (DAC = 29573)
17-03-18 06:22:58.404 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.414 -07 000000461 INF: FPGA: Recv ZSGSRD 30372
17-03-18 06:22:58.414 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:22:58.414 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.414 -07 000000611 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:22:58.424 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:22:58.424 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.424 -07 000000461 INF: FPGA: Recv ZSGSRD 30359
17-03-18 06:22:58.434 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.434 -07 000000461 INF: FPGA: Recv ZSGSRD 30365
17-03-18 06:22:58.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:22:58.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:22:58.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.464 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:22:58.474 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.474 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30357
17-03-18 06:22:58.484 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30361
17-03-18 06:22:58.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:58.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30360
17-03-18 06:22:58.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.504 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:58.504 -07 000000467 INF: FPGA: Recv ZPIEZORD 26140
17-03-18 06:22:58.514 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30363 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30364 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30357 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30363, posNoise = 9, negNoise = 6
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: After move to -0.135377, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: Settle wait time = 1776 ms, measure time = 102 ms (allowed 150 ms), total time = 1878 ms
17-03-18 06:22:58.514 -07 000000447 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:22:58.564 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1931 ms
17-03-18 06:22:58.564 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:22:58.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:58.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:58.564 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:58.564 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:22:58.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:58.564 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:58.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:58.564 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:22:58.574 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:22:58.574 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:22:58.574 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:22:58.574 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:22:58.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:22:58.624 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:22:58.924 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:22:58.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:22:58.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:22:58.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 616294888, 0x0, 559484976) start.
17-03-18 06:22:58.964 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:22:58.964 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:22:58.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:22:59.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 616294888, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:22:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:22:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:22:59.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:22:59.064 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:22:59.064 -07 000000480 INF: Autofocus start
17-03-18 06:22:59.064 -07 000000480 INF: MeasureProfile start
17-03-18 06:22:59.064 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:22:59.074 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:22:59.074 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:22:59.074 -07 000000480 INF: MeasureProfile done
17-03-18 06:22:59.074 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:22:59.074 -07 000000480 INF: Autofocus finished
17-03-18 06:22:59.274 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:22:59.274 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:22:59.284 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135381705271423. ----------
17-03-18 06:22:59.284 -07 000000610 INF: Cycle	148	Tile	14	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:22:59.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-18 06:22:59.284 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.135382 mm, distance = 6.84 um
17-03-18 06:22:59.284 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-18 06:22:59.284 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:22:59.294 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:22:59.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:22:59.294 -07 000000480 INF: FPGA: Recv ZDACR 28081
17-03-18 06:22:59.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:22:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29303
17-03-18 06:22:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:22:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.464 -07 000000569 INF: FPGA: Recv ZSGSRD 29305
17-03-18 06:22:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.474 -07 000000461 INF: FPGA: Recv ZSGSRD 29292
17-03-18 06:22:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:22:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:22:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.504 -07 000000569 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:22:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.514 -07 000000447 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:22:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.524 -07 000000467 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:22:59.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.534 -07 000000447 INF: FPGA: Recv ZSGSRD 29304
17-03-18 06:22:59.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:22:59.544 -07 000000480 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:22:59.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:22:59.554 -07 000000461 INF: FPGA: Recv ZPIEZORD 24739
17-03-18 06:22:59.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:22:59.564 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -10.0 V.
17-03-18 06:22:59.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29292 (-127.7 uncal um), Max = 29305 (-127.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:22:59.564 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 5, negNoise = 8
17-03-18 06:22:59.564 -07 000000610 INF: Z Motor: After move to -0.128547, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:22:59.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:22:59.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:22:59.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:22:59.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:22:59.564 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:22:59.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:22:59.564 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:22:59.564 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:22:59.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:22:59.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:22:59.564 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:22:59.564 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:22:59.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:22:59.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:22:59.574 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:22:59.574 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:22:59.574 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:22:59.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:22:59.584 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:22:59.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:22:59.584 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:22:59.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28257 150\n [Camera]
17-03-18 06:22:59.784 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:00.224 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.011254,
17-03-18 06:23:00.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:00.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:00.244 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:00.244 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:00.244 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:00.244 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:00.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:00.244 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:00.244 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:00.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:00.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28257 842
17-03-18 06:23:00.584 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:00.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:23:00.634 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:23:00.634 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:00.644 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:23:00.644 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:23:00.644 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:00.644 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:00.644 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:23:00.644 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:00.654 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:23:00.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:00.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:00.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:00.914 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:00.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:00.914 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:00.924 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:00.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:23:00.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:00.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:23:00.994 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:23:00.994 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:00.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28257 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-18 06:23:00.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:23:00.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128552767764731. ------
17-03-18 06:23:01.004 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:01.004 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13529 mm
17-03-18 06:23:01.004 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:23:01.004 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:23:01.004 -07 000000591 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:23:01.004 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:01.004 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29554, sync = True, waitForSettling = False)
17-03-18 06:23:01.004 -07 000000585 INF: Z Motor: Moving to -0.135290 mm, started at -0.128553 mm, distance = -6.74 um
17-03-18 06:23:01.014 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:23:01.014 -07 000000585 INF: FPGA: Xmit ZDACW 29554\n [Z Motor]
17-03-18 06:23:01.014 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:23:01.024 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:01.024 -07 000000585 INF: FPGA: 'ZDACW 29554' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:23:01.024 -07 000000447 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:23:01.034 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:23:01.034 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:23:01.034 -07 000000591 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:01.034 -07 000000591 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:23:01.034 -07 000000591 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:23:01.044 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:01.044 -07 000000579 INF: FPGA: Recv ZDACR 29554
17-03-18 06:23:01.054 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:23:01.054 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:23:01.054 -07 000000585 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:23:01.234 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:23:01.234 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:23:01.324 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:23:01.324 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:23:01.324 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:01.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:23:01.324 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:23:01.324 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:01.324 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:01.324 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:01.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 06:23:01.334 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:23:01.424 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:23:01.424 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:23:01.474 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:01.484 -07 000000438 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:23:01.484 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:23:01.484 -07 000000591 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:01.484 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:23:01.484 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 06:23:01.854 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:02.434 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:02.434 -07 000000585 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:23:02.444 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:02.444 -07 000000591 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:02.474 -07 000000591 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:02.474 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:23:02.474 -07 000000591 INF: Y Motor: Moved to 71.5181 after 1467 ms (table move)
17-03-18 06:23:02.474 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135290 mm (DAC = 29554)
17-03-18 06:23:02.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.484 -07 000000461 INF: FPGA: Recv ZSGSRD 30354
17-03-18 06:23:02.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:23:02.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30350
17-03-18 06:23:02.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.494 -07 000000438 INF: FPGA: Recv ZSGSRD 30348
17-03-18 06:23:02.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.504 -07 000000461 INF: FPGA: Recv ZSGSRD 30351
17-03-18 06:23:02.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.514 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.514 -07 000000438 INF: FPGA: Recv ZSGSRD 30353
17-03-18 06:23:02.524 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.524 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.524 -07 000000502 INF: FPGA: Recv ZSGSRD 30355
17-03-18 06:23:02.534 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.534 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.534 -07 000000438 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:23:02.544 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.544 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30339
17-03-18 06:23:02.554 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.554 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.554 -07 000000438 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:23:02.564 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.564 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:02.564 -07 000000461 INF: FPGA: Recv ZSGSRD 30355
17-03-18 06:23:02.574 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.574 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:02.574 -07 000000438 INF: FPGA: Recv ZPIEZORD 26126
17-03-18 06:23:02.584 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -9.3 V.
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30349 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30350 (-134.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30339 (-134.4 uncal um), Max = 30355 (-134.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30349, posNoise = 6, negNoise = 10
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: After move to -0.135290, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: Settle wait time = 1471 ms, measure time = 103 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:23:02.584 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:23:02.634 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:23:02.634 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:23:02.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:02.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:02.634 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:23:02.634 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:02.634 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:02.634 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:02.644 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:23:02.644 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:23:02.644 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:02.644 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:23:02.654 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:23:02.654 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:23:02.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:23:02.694 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:23:02.994 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:23:02.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:23:02.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:23:03.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:23:03.034 -07 000000502 INF: FPGA: Recv @CAMSNAP 381
17-03-18 06:23:03.034 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:23:03.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 06:23:03.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:23:03.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:03.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:23:03.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:23:03.234 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:03.234 -07 000000467 INF: Autofocus start
17-03-18 06:23:03.234 -07 000000467 INF: MeasureProfile start
17-03-18 06:23:03.234 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:03.244 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:03.244 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:23:03.254 -07 000000467 INF: MeasureProfile done
17-03-18 06:23:03.254 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:23:03.254 -07 000000467 INF: Autofocus finished
17-03-18 06:23:03.444 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:23:03.444 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:23:03.444 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135291766301438. ----------
17-03-18 06:23:03.454 -07 000000610 INF: Cycle	148	Tile	15	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:23:03.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28078, sync = True, waitForSettling = True)
17-03-18 06:23:03.454 -07 000000610 INF: Z Motor: Moving to -0.128533 mm, started at -0.135292 mm, distance = 6.76 um
17-03-18 06:23:03.454 -07 000000610 INF: FPGA: Xmit ZDACW 28078\n [Z Motor]
17-03-18 06:23:03.454 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:23:03.464 -07 000000610 INF: FPGA: 'ZDACW 28078' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:03.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:03.464 -07 000000467 INF: FPGA: Recv ZDACR 28078
17-03-18 06:23:03.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:23:03.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:23:03.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.634 -07 000000447 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:23:03.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.644 -07 000000438 INF: FPGA: Recv ZSGSRD 29296
17-03-18 06:23:03.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.654 -07 000000382 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:23:03.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.664 -07 000000461 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:23:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.674 -07 000000591 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:23:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.684 -07 000000447 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:23:03.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.694 -07 000000438 INF: FPGA: Recv ZSGSRD 29296
17-03-18 06:23:03.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.704 -07 000000502 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:23:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:03.714 -07 000000591 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:23:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:03.724 -07 000000447 INF: FPGA: Recv ZPIEZORD 24788
17-03-18 06:23:03.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:03.734 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.9 V.
17-03-18 06:23:03.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29298 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29298 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29296 (-127.8 uncal um), Max = 29301 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:23:03.734 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29298, posNoise = 3, negNoise = 2
17-03-18 06:23:03.734 -07 000000610 INF: Z Motor: After move to -0.128533, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:03.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:23:03.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:03.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:03.734 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:03.734 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:23:03.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:03.734 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:23:03.734 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:23:03.734 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:03.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:23:03.734 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:23:03.734 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:23:03.734 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:23:03.744 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:23:03.744 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:23:03.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:03.744 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:23:03.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:23:03.754 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:23:03.754 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:23:03.754 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:23:03.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28255 150\n [Camera]
17-03-18 06:23:03.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:04.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:04.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:04.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:04.414 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:04.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:04.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:04.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:04.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:04.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:04.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:04.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28255 842
17-03-18 06:23:04.754 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:04.814 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:23:04.814 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:23:04.814 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:04.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:23:04.814 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:23:04.814 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:04.814 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:04.814 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:04.814 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:23:04.824 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:23:04.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:04.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:04.974 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:05.084 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:05.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:05.094 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:05.094 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:05.094 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:23:05.094 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:05.094 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:23:05.164 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:23:05.164 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:05.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28255 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-18 06:23:05.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:23:05.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128539919340448. ------
17-03-18 06:23:05.174 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:05.174 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13499 mm
17-03-18 06:23:05.174 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:23:05.174 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:23:05.174 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:23:05.174 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-18 06:23:05.174 -07 000000502 INF: Z Motor: Moving to -0.134992 mm, started at -0.128540 mm, distance = -6.45 um
17-03-18 06:23:05.174 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:05.184 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:05.184 -07 000000502 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-18 06:23:05.184 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:23:05.194 -07 000000502 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:23:05.194 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:05.194 -07 000000591 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:23:05.204 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:23:05.204 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:23:05.204 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:05.204 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:23:05.204 -07 000000467 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:23:05.214 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:05.214 -07 000000438 INF: FPGA: Recv ZDACR 29489
17-03-18 06:23:05.224 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:23:05.224 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:23:05.224 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:23:05.404 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:23:05.404 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:23:05.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:23:05.494 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:23:05.494 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:05.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:23:05.494 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:23:05.494 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:05.494 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:05.494 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:05.494 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:23:05.504 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:23:05.594 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.046637,
17-03-18 06:23:05.594 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:23:05.604 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-18 06:23:05.654 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:05.654 -07 000000579 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:23:05.664 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:23:05.664 -07 000000467 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:05.664 -07 000000467 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:23:05.664 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-18 06:23:06.614 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:06.614 -07 000000474 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:23:06.624 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:06.624 -07 000000467 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:06.654 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:06.654 -07 000000467 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:23:06.654 -07 000000467 INF: Y Motor: Moved to 72.3486 after 1478 ms (table move)
17-03-18 06:23:06.654 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-18 06:23:06.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.654 -07 000000455 INF: FPGA: Recv ZSGSRD 30307
17-03-18 06:23:06.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:23:06.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.664 -07 000000611 INF: FPGA: Recv ZSGSRD 30299
17-03-18 06:23:06.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.674 -07 000000608 INF: FPGA: Recv ZSGSRD 30293
17-03-18 06:23:06.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.684 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.684 -07 000000462 INF: FPGA: Recv ZSGSRD 30306
17-03-18 06:23:06.694 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.694 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.694 -07 000000629 INF: FPGA: Recv ZSGSRD 30300
17-03-18 06:23:06.704 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.704 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.704 -07 000000447 INF: FPGA: Recv ZSGSRD 30308
17-03-18 06:23:06.714 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.714 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.714 -07 000000438 INF: FPGA: Recv ZSGSRD 30306
17-03-18 06:23:06.724 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.724 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.724 -07 000000611 INF: FPGA: Recv ZSGSRD 30305
17-03-18 06:23:06.734 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.734 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.734 -07 000000474 INF: FPGA: Recv ZSGSRD 30312
17-03-18 06:23:06.744 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.744 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:06.744 -07 000000592 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:23:06.754 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.754 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:06.754 -07 000000455 INF: FPGA: Recv ZPIEZORD 26042
17-03-18 06:23:06.764 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.4 V.
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30304 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30293 (-134.1 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30304, posNoise = 8, negNoise = 11
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: After move to -0.134992, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: Settle wait time = 1481 ms, measure time = 105 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:23:06.764 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:23:06.814 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:23:06.814 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:23:06.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:06.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:06.814 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:23:06.814 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:06.814 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:06.814 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:06.814 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:23:06.814 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:23:06.824 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:06.824 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:23:06.824 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:23:06.824 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:23:06.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:23:06.854 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:06.884 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:23:07.184 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:23:07.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:23:07.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:23:07.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:23:07.214 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:23:07.224 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:23:07.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 06:23:07.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:23:07.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:07.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:23:07.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:23:07.324 -07 000000461 INF: Autofocus start
17-03-18 06:23:07.324 -07 000000461 INF: MeasureProfile start
17-03-18 06:23:07.324 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:07.324 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:07.334 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:23:07.334 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:23:07.334 -07 000000461 INF: MeasureProfile done
17-03-18 06:23:07.334 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:23:07.334 -07 000000461 INF: Autofocus finished
17-03-18 06:23:07.534 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:23:07.534 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:23:07.534 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.135002676755059. ----------
17-03-18 06:23:07.534 -07 000000610 INF: Cycle	148	Tile	16	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:23:07.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27983, sync = True, waitForSettling = True)
17-03-18 06:23:07.544 -07 000000610 INF: Z Motor: Moving to -0.128098 mm, started at -0.135003 mm, distance = 6.90 um
17-03-18 06:23:07.544 -07 000000610 INF: FPGA: Xmit ZDACW 27983\n [Z Motor]
17-03-18 06:23:07.544 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:23:07.554 -07 000000610 INF: FPGA: 'ZDACW 27983' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:23:07.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:07.554 -07 000000501 INF: FPGA: Recv ZDACR 27983
17-03-18 06:23:07.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:23:07.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.714 -07 000000608 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:23:07.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:07.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:23:07.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.734 -07 000000455 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:23:07.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.744 -07 000000467 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:23:07.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.754 -07 000000480 INF: FPGA: Recv ZSGSRD 29231
17-03-18 06:23:07.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.764 -07 000000479 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:23:07.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.774 -07 000000461 INF: FPGA: Recv ZSGSRD 29232
17-03-18 06:23:07.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.784 -07 000000579 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:23:07.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29226
17-03-18 06:23:07.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:07.804 -07 000000480 INF: FPGA: Recv ZSGSRD 29227
17-03-18 06:23:07.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:07.814 -07 000000608 INF: FPGA: Recv ZPIEZORD 24666
17-03-18 06:23:07.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:07.824 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -10.0 V.
17-03-18 06:23:07.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29229 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29229 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29226 (-127.3 uncal um), Max = 29232 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:23:07.824 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29229, posNoise = 3, negNoise = 3
17-03-18 06:23:07.824 -07 000000610 INF: Z Motor: After move to -0.128098, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:07.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:23:07.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:07.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:07.824 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:07.824 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:23:07.824 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:07.824 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:23:07.824 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:23:07.824 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:07.824 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:23:07.824 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:23:07.824 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 06:23:07.824 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:23:07.834 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:23:07.834 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:23:07.834 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:07.834 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:23:07.844 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:23:07.844 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:23:07.844 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:23:07.844 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:23:07.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28160 150\n [Camera]
17-03-18 06:23:08.044 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:08.504 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:08.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:08.504 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:08.504 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:08.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:08.504 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:08.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:08.504 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:08.504 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:08.504 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:08.694 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28160 842
17-03-18 06:23:08.844 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:08.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:23:08.884 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:23:08.884 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:08.884 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:08.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:23:08.884 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:23:08.884 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:08.894 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:08.894 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:23:08.894 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:23:09.064 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:09.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:09.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:09.064 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:09.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:09.064 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:09.074 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:09.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:23:09.074 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:09.074 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:23:09.254 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:23:09.254 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:09.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28160 150' command took 2 ms to send, 1407 ms to get response, and 1411 ms overall
17-03-18 06:23:09.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:23:09.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128096648702666. ------
17-03-18 06:23:09.264 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13458 mm
17-03-18 06:23:09.264 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:23:09.264 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:09.264 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:23:09.264 -07 000000592 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:23:09.264 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29398, sync = True, waitForSettling = False)
17-03-18 06:23:09.264 -07 000000629 INF: Z Motor: Moving to -0.134575 mm, started at -0.128097 mm, distance = -6.48 um
17-03-18 06:23:09.264 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:09.274 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:09.274 -07 000000629 INF: FPGA: Xmit ZDACW 29398\n [Z Motor]
17-03-18 06:23:09.274 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:23:09.284 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:09.284 -07 000000629 INF: FPGA: 'ZDACW 29398' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:09.284 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:23:09.294 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:23:09.294 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:23:09.294 -07 000000592 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:09.294 -07 000000592 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:23:09.294 -07 000000592 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:23:09.304 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:09.304 -07 000000608 INF: FPGA: Recv ZDACR 29398
17-03-18 06:23:09.314 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:23:09.314 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:23:09.314 -07 000000629 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:23:09.474 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:23:09.474 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:23:09.474 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:09.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:23:09.474 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:23:09.474 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:09.474 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:09.474 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:09.474 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:23:09.484 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:23:09.494 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:23:09.494 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:23:09.684 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:23:09.684 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:23:09.734 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:09.744 -07 000000579 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:23:09.744 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:23:09.744 -07 000000592 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:09.744 -07 000000592 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:23:09.744 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-18 06:23:10.694 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:10.694 -07 000000629 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:23:10.704 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.704 -07 000000592 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:10.734 -07 000000592 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:10.734 -07 000000592 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:23:10.734 -07 000000592 INF: Y Motor: Moved to 73.1753 after 1466 ms (table move)
17-03-18 06:23:10.734 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134575 mm (DAC = 29398)
17-03-18 06:23:10.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.744 -07 000000592 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:23:10.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:23:10.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.744 -07 000000592 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:23:10.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.754 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.754 -07 000000455 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:23:10.764 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.764 -07 000000455 INF: FPGA: Recv ZSGSRD 30239
17-03-18 06:23:10.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.774 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.774 -07 000000579 INF: FPGA: Recv ZSGSRD 30236
17-03-18 06:23:10.784 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.784 -07 000000474 INF: FPGA: Recv ZSGSRD 30241
17-03-18 06:23:10.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.794 -07 000000592 INF: FPGA: Recv ZSGSRD 30237
17-03-18 06:23:10.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:23:10.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.814 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.814 -07 000000629 INF: FPGA: Recv ZSGSRD 30231
17-03-18 06:23:10.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:10.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:23:10.834 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.834 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:10.834 -07 000000579 INF: FPGA: Recv ZPIEZORD 26030
17-03-18 06:23:10.844 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.3 V.
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30236 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30236 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30231 (-133.7 uncal um), Max = 30241 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30236, posNoise = 5, negNoise = 5
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: After move to -0.134575, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:23:10.844 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:23:10.894 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:23:10.894 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:23:10.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:10.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:10.894 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:10.894 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:10.894 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:23:10.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:10.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:23:10.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:23:10.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:10.904 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:23:10.904 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:23:10.904 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:23:10.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:23:10.954 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:23:10.964 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.015368,
17-03-18 06:23:11.254 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:23:11.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:23:11.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:23:11.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:23:11.294 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:23:11.294 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:23:11.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:23:11.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:23:11.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:11.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:23:11.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:23:11.394 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:11.394 -07 000000382 INF: Autofocus start
17-03-18 06:23:11.394 -07 000000382 INF: MeasureProfile start
17-03-18 06:23:11.394 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:11.404 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:11.404 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:23:11.414 -07 000000382 INF: MeasureProfile done
17-03-18 06:23:11.414 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:23:11.414 -07 000000382 INF: Autofocus finished
17-03-18 06:23:11.604 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:23:11.604 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:23:11.604 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134565830329419. ----------
17-03-18 06:23:11.604 -07 000000610 INF: Cycle	148	Tile	17	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:23:11.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27893, sync = True, waitForSettling = True)
17-03-18 06:23:11.614 -07 000000610 INF: Z Motor: Moving to -0.127686 mm, started at -0.134566 mm, distance = 6.88 um
17-03-18 06:23:11.614 -07 000000610 INF: FPGA: Xmit ZDACW 27893\n [Z Motor]
17-03-18 06:23:11.614 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:23:11.624 -07 000000610 INF: FPGA: 'ZDACW 27893' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:11.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:11.624 -07 000000629 INF: FPGA: Recv ZDACR 27893
17-03-18 06:23:11.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:23:11.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.784 -07 000000579 INF: FPGA: Recv ZSGSRD 29170
17-03-18 06:23:11.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:11.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29167
17-03-18 06:23:11.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.804 -07 000000592 INF: FPGA: Recv ZSGSRD 29163
17-03-18 06:23:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:11.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.814 -07 000000592 INF: FPGA: Recv ZSGSRD 29166
17-03-18 06:23:11.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.824 -07 000000592 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:23:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.834 -07 000000382 INF: FPGA: Recv ZSGSRD 29164
17-03-18 06:23:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.844 -07 000000382 INF: FPGA: Recv ZSGSRD 29164
17-03-18 06:23:11.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.854 -07 000000382 INF: FPGA: Recv ZSGSRD 29165
17-03-18 06:23:11.854 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:11.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.864 -07 000000480 INF: FPGA: Recv ZSGSRD 29163
17-03-18 06:23:11.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:11.874 -07 000000629 INF: FPGA: Recv ZSGSRD 29164
17-03-18 06:23:11.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:11.884 -07 000000592 INF: FPGA: Recv ZPIEZORD 24621
17-03-18 06:23:11.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:11.894 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -10.0 V.
17-03-18 06:23:11.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29166 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29164 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29163 (-126.9 uncal um), Max = 29170 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:23:11.894 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29166, posNoise = 4, negNoise = 3
17-03-18 06:23:11.894 -07 000000610 INF: Z Motor: After move to -0.127686, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:11.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:23:11.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:11.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:11.894 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:11.894 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:11.894 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:23:11.894 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:11.894 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:23:11.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:23:11.894 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:23:11.894 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:23:11.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:23:11.894 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:23:11.894 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:11.894 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:23:11.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:23:11.904 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:23:11.904 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:23:11.904 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:23:11.914 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:23:11.914 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:23:11.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28070 150\n [Camera]
17-03-18 06:23:12.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:12.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:12.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:12.574 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:12.574 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:12.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:12.574 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:12.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:12.574 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:12.574 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:12.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:12.764 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28070 842
17-03-18 06:23:12.914 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:12.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:23:12.964 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:23:12.964 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:12.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:23:12.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:23:12.974 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:12.974 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:12.974 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:23:12.974 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:12.984 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:23:13.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:13.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:13.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:13.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:13.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:13.254 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:13.254 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:13.254 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:23:13.254 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:13.254 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:23:13.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:23:13.324 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:13.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28070 150' command took 2 ms to send, 1404 ms to get response, and 1412 ms overall
17-03-18 06:23:13.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:23:13.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127691923337735. ------
17-03-18 06:23:13.334 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:13.334 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13361 mm
17-03-18 06:23:13.334 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:23:13.334 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:23:13.334 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:23:13.334 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:13.334 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29188, sync = True, waitForSettling = False)
17-03-18 06:23:13.334 -07 000000501 INF: Z Motor: Moving to -0.133614 mm, started at -0.127692 mm, distance = -5.92 um
17-03-18 06:23:13.344 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:13.344 -07 000000501 INF: FPGA: Xmit ZDACW 29188\n [Z Motor]
17-03-18 06:23:13.344 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:23:13.354 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:13.354 -07 000000501 INF: FPGA: 'ZDACW 29188' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:23:13.354 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-18 06:23:13.364 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:23:13.364 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:23:13.364 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:13.364 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:23:13.364 -07 000000480 INF: Y Motor: Moving 1355 steps-35
17-03-18 06:23:13.374 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:13.374 -07 000000438 INF: FPGA: Recv ZDACR 29188
17-03-18 06:23:13.384 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:23:13.384 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:23:13.384 -07 000000501 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:23:13.564 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:23:13.564 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:23:13.654 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:23:13.654 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:23:13.654 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:13.654 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:23:13.654 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:23:13.654 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:13.654 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:13.654 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:23:13.654 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:13.664 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:23:13.754 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:23:13.754 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:23:13.794 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:13.804 -07 000000502 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:23:13.804 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:23:13.804 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:13.804 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:23:13.804 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.847 mm, average velocity = 2.156 mm/sec
17-03-18 06:23:14.754 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:14.754 -07 000000455 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:23:14.764 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:14.764 -07 000000480 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:14.784 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:14.784 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:23:14.784 -07 000000480 INF: Y Motor: Moved to 74.0078 after 1450 ms (table move)
17-03-18 06:23:14.784 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133614 mm (DAC = 29188)
17-03-18 06:23:14.784 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.794 -07 000000608 INF: FPGA: Recv ZSGSRD 30091
17-03-18 06:23:14.794 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:23:14.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.794 -07 000000569 INF: FPGA: Recv ZSGSRD 30086
17-03-18 06:23:14.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:14.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30093
17-03-18 06:23:14.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.814 -07 000000462 INF: FPGA: Recv ZSGSRD 30093
17-03-18 06:23:14.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.824 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.824 -07 000000608 INF: FPGA: Recv ZSGSRD 30085
17-03-18 06:23:14.834 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.834 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.834 -07 000000569 INF: FPGA: Recv ZSGSRD 30087
17-03-18 06:23:14.844 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.844 -07 000000474 INF: FPGA: Recv ZSGSRD 30087
17-03-18 06:23:14.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.854 -07 000000438 INF: FPGA: Recv ZSGSRD 30089
17-03-18 06:23:14.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.864 -07 000000467 INF: FPGA: Recv ZSGSRD 30086
17-03-18 06:23:14.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.874 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:14.874 -07 000000579 INF: FPGA: Recv ZSGSRD 30093
17-03-18 06:23:14.884 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.884 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:14.884 -07 000000501 INF: FPGA: Recv ZPIEZORD 25844
17-03-18 06:23:14.894 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.3 V.
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30089 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30088 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30085 (-132.8 uncal um), Max = 30093 (-132.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30089, posNoise = 4, negNoise = 4
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: After move to -0.133614, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 06:23:14.894 -07 000000591 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:23:14.944 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 06:23:14.944 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:23:14.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:14.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:14.944 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:14.954 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:23:14.954 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:14.954 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:14.954 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:23:14.954 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:23:14.954 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:14.954 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:23:14.964 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:23:14.964 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:23:14.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:23:15.014 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:23:15.314 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:23:15.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:23:15.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:23:15.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:23:15.354 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:23:15.354 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:23:15.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:23:15.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:23:15.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:15.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:23:15.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:23:15.454 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:15.454 -07 000000629 INF: Autofocus start
17-03-18 06:23:15.454 -07 000000629 INF: MeasureProfile start
17-03-18 06:23:15.454 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:15.464 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:23:15.464 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:23:15.474 -07 000000629 INF: MeasureProfile done
17-03-18 06:23:15.474 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:23:15.474 -07 000000629 INF: Autofocus finished
17-03-18 06:23:15.664 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:23:15.664 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:23:15.664 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.13362147114458. ----------
17-03-18 06:23:15.664 -07 000000610 INF: Cycle	148	Tile	18	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:23:15.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27695, sync = True, waitForSettling = True)
17-03-18 06:23:15.674 -07 000000610 INF: Z Motor: Moving to -0.126780 mm, started at -0.133621 mm, distance = 6.84 um
17-03-18 06:23:15.674 -07 000000610 INF: FPGA: Xmit ZDACW 27695\n [Z Motor]
17-03-18 06:23:15.674 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:23:15.684 -07 000000610 INF: FPGA: 'ZDACW 27695' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:15.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:15.684 -07 000000474 INF: FPGA: Recv ZDACR 27695
17-03-18 06:23:15.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:23:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.844 -07 000000438 INF: FPGA: Recv ZSGSRD 29025
17-03-18 06:23:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.854 -07 000000591 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:23:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.864 -07 000000502 INF: FPGA: Recv ZSGSRD 29023
17-03-18 06:23:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29025
17-03-18 06:23:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.884 -07 000000438 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:23:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.894 -07 000000480 INF: FPGA: Recv ZSGSRD 29029
17-03-18 06:23:15.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29027
17-03-18 06:23:15.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29021
17-03-18 06:23:15.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.924 -07 000000467 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:23:15.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:15.934 -07 000000579 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:23:15.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:15.944 -07 000000569 INF: FPGA: Recv ZPIEZORD 24472
17-03-18 06:23:15.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:15.954 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.226 V. Piezo Error = -10.0 V.
17-03-18 06:23:15.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29025 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29024 (-126.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29021 (-126.0 uncal um), Max = 29029 (-126.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:23:15.954 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29025, posNoise = 4, negNoise = 4
17-03-18 06:23:15.954 -07 000000610 INF: Z Motor: After move to -0.126780, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:15.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:23:15.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:15.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:15.954 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:15.954 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:23:15.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:23:15.954 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:23:15.954 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:15.954 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:15.954 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:23:15.954 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:23:15.954 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:23:15.954 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:23:15.964 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:23:15.964 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:23:15.964 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:23:15.964 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:23:15.974 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:23:15.974 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:23:15.974 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:23:15.974 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:23:15.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 27872 150\n [Camera]
17-03-18 06:23:16.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:16.334 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.007176,
17-03-18 06:23:16.634 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:16.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:16.634 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:16.634 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:16.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:16.634 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:16.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:16.634 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:16.634 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:16.634 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:16.824 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27872 842
17-03-18 06:23:16.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 147. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:16.974 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:17.024 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:23:17.024 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:23:17.024 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:17.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:23:17.024 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:23:17.024 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:17.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:17.034 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:23:17.034 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:17.034 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:23:17.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:17.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:17.194 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:17.304 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:17.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:17.314 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:17.314 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:17.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:23:17.314 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:17.314 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:23:17.384 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-18 06:23:17.384 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:17.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 27872 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-18 06:23:17.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:23:17.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126786109425747. ------
17-03-18 06:23:17.394 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:17.394 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13319 mm
17-03-18 06:23:17.394 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:23:17.394 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:23:17.394 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 06:23:17.394 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29096, sync = True, waitForSettling = False)
17-03-18 06:23:17.394 -07 000000579 INF: Z Motor: Moving to -0.133193 mm, started at -0.126786 mm, distance = -6.41 um
17-03-18 06:23:17.394 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:17.404 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:23:17.404 -07 000000579 INF: FPGA: Xmit ZDACW 29096\n [Z Motor]
17-03-18 06:23:17.404 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:23:17.414 -07 000000579 INF: FPGA: 'ZDACW 29096' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:23:17.414 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:17.414 -07 000000501 INF: FPGA: Recv ZDACR 29096
17-03-18 06:23:17.424 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:17.424 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:17.424 -07 000000579 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 06:23:17.424 -07 000000585 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:23:17.434 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:23:17.434 -07 000000569 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:23:17.434 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:17.434 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:23:17.434 -07 000000569 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:23:17.444 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:23:17.634 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:23:17.634 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 06:23:17.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:23:17.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:23:17.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:17.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:23:17.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:23:17.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:17.714 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:17.724 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:17.724 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:23:17.724 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:23:17.814 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:23:17.814 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:23:17.854 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:17.854 -07 000000629 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:23:17.864 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:17.864 -07 000000569 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:17.864 -07 000000569 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:23:17.864 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-18 06:23:18.814 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:18.814 -07 000000579 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:23:18.824 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:23:18.824 -07 000000569 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:18.844 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:18.844 -07 000000569 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:23:18.844 -07 000000569 INF: Y Motor: Moved to 74.8311 after 1442 ms (table move)
17-03-18 06:23:18.844 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133193 mm (DAC = 29096)
17-03-18 06:23:18.844 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.844 -07 000000579 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:23:18.854 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:18.854 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.854 -07 000000585 INF: FPGA: Recv ZSGSRD 30022
17-03-18 06:23:18.864 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.864 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.864 -07 000000462 INF: FPGA: Recv ZSGSRD 30017
17-03-18 06:23:18.874 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.874 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.874 -07 000000438 INF: FPGA: Recv ZSGSRD 30020
17-03-18 06:23:18.884 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.884 -07 000000480 INF: FPGA: Recv ZSGSRD 30026
17-03-18 06:23:18.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.894 -07 000000447 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:23:18.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:18.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.904 -07 000000579 INF: FPGA: Recv ZSGSRD 30019
17-03-18 06:23:18.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.914 -07 000000592 INF: FPGA: Recv ZSGSRD 30016
17-03-18 06:23:18.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.924 -07 000000502 INF: FPGA: Recv ZSGSRD 30022
17-03-18 06:23:18.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:18.934 -07 000000608 INF: FPGA: Recv ZSGSRD 30022
17-03-18 06:23:18.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.944 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:18.944 -07 000000447 INF: FPGA: Recv ZPIEZORD 25794
17-03-18 06:23:18.954 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.3 V.
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30016 (-132.4 uncal um), Max = 30033 (-132.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 10, negNoise = 7
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: After move to -0.133193, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: Settle wait time = 1444 ms, measure time = 107 ms (allowed 150 ms), total time = 1551 ms
17-03-18 06:23:18.954 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:23:19.004 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 06:23:19.004 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:23:19.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:19.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:19.004 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:19.004 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:19.004 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:23:19.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:19.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:23:19.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:23:19.014 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:23:19.014 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:23:19.024 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:23:19.024 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:23:19.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:23:19.074 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:23:19.374 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:23:19.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:23:19.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:23:19.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:23:19.414 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:23:19.414 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:23:19.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:23:19.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:23:19.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:19.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:23:19.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:23:19.514 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:23:19.514 -07 000000474 INF: Autofocus start
17-03-18 06:23:19.514 -07 000000474 INF: MeasureProfile start
17-03-18 06:23:19.514 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:23:19.524 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:19.524 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:23:19.524 -07 000000474 INF: MeasureProfile done
17-03-18 06:23:19.524 -07 000000474 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:23:19.524 -07 000000474 INF: Autofocus finished
17-03-18 06:23:19.724 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:23:19.724 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:23:19.724 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133197473143224. ----------
17-03-18 06:23:19.724 -07 000000610 INF: Cycle	148	Tile	19	Exposure Settings		A	457	G	220	T	220	C	457
17-03-18 06:23:19.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27620, sync = True, waitForSettling = True)
17-03-18 06:23:19.734 -07 000000610 INF: Z Motor: Moving to -0.126436 mm, started at -0.133197 mm, distance = 6.76 um
17-03-18 06:23:19.734 -07 000000610 INF: FPGA: Xmit ZDACW 27620\n [Z Motor]
17-03-18 06:23:19.734 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:23:19.744 -07 000000610 INF: FPGA: 'ZDACW 27620' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:23:19.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:23:19.744 -07 000000480 INF: FPGA: Recv ZDACR 27620
17-03-18 06:23:19.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:23:19.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.904 -07 000000501 INF: FPGA: Recv ZSGSRD 28972
17-03-18 06:23:19.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.914 -07 000000611 INF: FPGA: Recv ZSGSRD 28974
17-03-18 06:23:19.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.924 -07 000000502 INF: FPGA: Recv ZSGSRD 28968
17-03-18 06:23:19.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.934 -07 000000585 INF: FPGA: Recv ZSGSRD 28970
17-03-18 06:23:19.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.944 -07 000000591 INF: FPGA: Recv ZSGSRD 28972
17-03-18 06:23:19.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.954 -07 000000455 INF: FPGA: Recv ZSGSRD 28971
17-03-18 06:23:19.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.964 -07 000000438 INF: FPGA: Recv ZSGSRD 28974
17-03-18 06:23:19.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.974 -07 000000629 INF: FPGA: Recv ZSGSRD 28972
17-03-18 06:23:19.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.984 -07 000000467 INF: FPGA: Recv ZSGSRD 28971
17-03-18 06:23:19.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:19.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:23:19.994 -07 000000462 INF: FPGA: Recv ZSGSRD 28974
17-03-18 06:23:20.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:20.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:23:20.004 -07 000000608 INF: FPGA: Recv ZPIEZORD 24424
17-03-18 06:23:20.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:20.014 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.215 V. Piezo Error = -10.0 V.
17-03-18 06:23:20.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28972 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28972 (-125.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 28968 (-125.6 uncal um), Max = 28974 (-125.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:23:20.014 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28972, posNoise = 2, negNoise = 4
17-03-18 06:23:20.014 -07 000000610 INF: Z Motor: After move to -0.126436, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:23:20.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:23:20.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:23:20.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:23:20.014 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:23:20.014 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:23:20.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:23:20.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:23:20.014 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:23:20.014 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:23:20.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:23:20.014 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:23:20.014 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:23:20.014 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:23:20.024 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:23:20.024 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:23:20.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:23:20.024 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:23:20.024 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:23:20.024 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:23:20.034 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:23:20.034 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:23:20.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 27797 150\n [Camera]
17-03-18 06:23:20.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:23:20.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-18 06:23:20.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-18 06:23:20.694 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:20.694 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:20.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:23:20.694 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-18 06:23:20.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-18 06:23:20.694 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:20.694 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:20.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:23:20.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27797 842
17-03-18 06:23:21.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-18 06:23:21.084 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:23:21.084 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:23:21.084 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:21.084 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:23:21.084 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:23:21.084 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:21.084 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:21.084 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:23:21.084 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:23:21.094 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:23:21.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-18 06:23:21.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-18 06:23:21.254 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:23:21.264 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-18 06:23:21.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-18 06:23:21.264 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:23:21.264 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:23:21.264 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:23:21.264 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:23:21.264 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:23:21.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-18 06:23:21.444 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:23:21.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 27797 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:23:21.634 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:23:21.634 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:23:21.634 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:21.644 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:21.644 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:23:21.644 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:23:21.644 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:23:21.644 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:23:21.644 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:23:21.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:23:21.654 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:23:21.684 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:23:21.694 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:23:21.714 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.027603,
17-03-18 06:23:21.734 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 06:23:21.754 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 06:23:21.754 -07 000000610 INF: Imaging Cycle 148: ScanTilesCommand Cycle 148 time end. Duration was 180061 ms.
17-03-18 06:23:21.754 -07 000000610 INF: =================== Cycle #148 ===================
17-03-18 06:23:21.754 -07 000000610 INF: ===================  ===================
17-03-18 06:23:21.764 -07 000000585 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:23:21.764 -07 000000479 INF: FPGA: Recv EXLED1ADCR 23
17-03-18 06:23:21.774 -07 000000585 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:23:21.774 -07 000000585 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-18 06:23:21.774 -07 000000585 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 148, FrontChillerTemperature: 4.027603, FrontChillerHeatSinkTemperature: 0.292914, AmbientTemperature: 18.70333, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.41256, GreenLEDSensorTemperature: 27.25751, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-18 06:23:21.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:21.884 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.